pre-miRNA Information
pre-miRNA hsa-mir-4464   
Genomic Coordinates chr6: 90312742 - 90312833
Description Homo sapiens miR-4464 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4464
Sequence 12| AAGGUUUGGAUAGAUGCAAUA |32
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 12 6 + 90312764 29233923 MiREDiBase
A-to-I 14 6 + 90312766 29233923 MiREDiBase
A-to-I 19 6 + 90312771 29233923 MiREDiBase
A-to-I 21 6 + 90312773 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1240632245 2 dbSNP
rs34899210 2 dbSNP
rs1003034046 13 dbSNP
rs1475351324 14 dbSNP
rs1257582329 17 dbSNP
rs1193587810 20 dbSNP
Putative Targets

Gene Information
Gene Symbol MAZ   
Synonyms PUR1, Pur-1, SAF-1, SAF-2, SAF-3, ZF87, ZNF801, Zif87
Description MYC associated zinc finger protein
Transcript NM_001042539   
Other Transcripts NM_002383   
Expression
Putative miRNA Targets on MAZ
3'UTR of MAZ
(miRNA target sites are highlighted)
>MAZ|NM_001042539|3'UTR
   1 GGGGGACCCCCGCACCCACCAGGTACTGGTGAGGTTTGTCCAATGGCGGCGGCAGCGGCAGCGGCGGCAGCGGCAGCAGC
  81 GGCAGCAGTAGCAGCCCCTCCCACAGCTGTGGGCTCCCTCTCGGGGGCGGAGGGGGTGCCTGTGAGCTCTCAGCCACTTC
 161 CCTCCCAACCCTGGTGAGCTCCAAGTTGGTTGCGGGGGAGAGGGGAGAATGGAGTAGAGTCCCTTGGTACAAGCTCCTCT
 241 CCCCCCTCTTTTCCCACCAACTCCTATTTCCCTACCAACCAAGGAGCCTCCAGAAGGAAAGGAGGAAGAAATGTTTTCTT
 321 AGGGGAATTCGCTAGGTTTTAACGATTTGTTTCTCCTGCTCCTCTTCTATCAGACCTGACCCCACACAAACCTGTCCCCT
 401 CGGTTGTGTTGAAGTCCCCTGGACAGTGGGCAGGGGTGGCAGAGGACACGAGCAGCCACTGCCCGTACCCCCTCTCCTCT
 481 CTGTAAGCCCATGCCCTGTCTTCCCAGGGACTTGTGAGCCTCTTCCCTCGACGGTCCTCTTCTCTCCTTCCAGTCCTCTC
 561 CCCCTGCTGTCTGCAGCCCCTCCCCGGGGAGTTGGTGCTTTCTTTTCCTTTTTTTTTTTTTTCCAGGGGGAGGGAGGAGA
 641 GGAAGGAGGGGGATCAGAGCTGTCCCAAAGAGGGAAAGCGGTGAGGTTTGAGGAGGGGCAGAAGCAGGGCCGGCAAAGGT
 721 TGTACCTTCATAAGGTGGTATGGGGGGTTGGGGTCAGGCCCTGAACATCGTCCTACTTGAGAATCTGTCAGGGGAAAAAG
 801 TCAAGGGGAGCAGGAGGAAGAGCCAGGAGGGCCAGAGGCAGAGAAGAGATGGAGTCTTAGGGGCCAGGGTGAGCGAGGGG
 881 TCCAGGGCCTAGAGGTGCTTCCTGGGGGCGGGGGAATGCAGCCAGTGTCCCCCTCCCCTCTTCCACCCCAGCTCCAGCCC
 961 TGGTCTTGTCTTTTCATCCCTCTTCCCCACGACAGAAGAAGTTGTGGCCCTGGCCATGTCATCGTGTTCCTGTGTCCCCT
1041 GCATGTACCCCACCCTCCACCCCTTCCTTTTGCGCGGACCCCATTACAATAAATTTTAAATAAAATCCTGTTTCTGGCTC
1121 TGGATTGAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auaacGUAGAUAGGUUUGGAa 5'
               | ||||| ||:|||| 
Target 5' ctcctCTTCTAT-CAGACCTg 3'
359 - 378 143.00 -11.40
2
miRNA  3' auaACGUAGAUAGGUUUGGAA----- 5'
             ||   | |  |||||||      
Target 5' accTGACCCCACACAAACCTGTCCCC 3'
374 - 399 126.00 -6.94
3
miRNA  3' auAACGUAGAUAGGUUUGGAa 5'
            || | ||   |||| ||| 
Target 5' acTTCCCTC---CCAACCCTg 3'
156 - 173 120.00 -6.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26983870 158 COSMIC
COSN16132056 203 COSMIC
COSN26983867 236 COSMIC
COSN13664810 272 COSMIC
COSN26983869 275 COSMIC
COSN509338 293 COSMIC
COSN13664812 303 COSMIC
COSN31494403 316 COSMIC
COSM1629860 328 COSMIC
COSM8155619 330 COSMIC
COSM7861430 335 COSMIC
COSM1588370 360 COSMIC
COSM6708947 361 COSMIC
COSM435074 363 COSMIC
COSM6708954 364 COSMIC
COSM3765885 367 COSMIC
COSM5713274 367 COSMIC
COSM5220006 372 COSMIC
COSM6144181 372 COSMIC
COSM5178395 373 COSMIC
COSM6708956 375 COSMIC
COSM1377258 376 COSMIC
COSM4771538 376 COSMIC
COSM1377259 379 COSMIC
COSM3414579 379 COSMIC
COSM8171190 379 COSMIC
COSM7658401 382 COSMIC
COSM7284702 388 COSMIC
COSM7452843 391 COSMIC
COSM4448806 393 COSMIC
COSM6708955 394 COSMIC
COSM8306853 397 COSMIC
COSM4610825 401 COSMIC
COSM6144180 402 COSMIC
COSM7767504 402 COSMIC
COSM7767519 403 COSMIC
COSM9750815 410 COSMIC
COSM8500530 435 COSMIC
COSM3937024 438 COSMIC
COSM8223990 441 COSMIC
COSM4128949 444 COSMIC
COSM1478768 464 COSMIC
COSN30153067 491 COSMIC
COSN31490006 513 COSMIC
COSN31975186 536 COSMIC
COSN31975176 614 COSMIC
COSN26676758 743 COSMIC
COSN20046498 762 COSMIC
COSN28866055 777 COSMIC
COSN26647764 800 COSMIC
COSN24305734 804 COSMIC
COSN30561252 825 COSMIC
COSN26505787 842 COSMIC
COSN31591524 898 COSMIC
COSN27214146 935 COSMIC
COSN20873715 1036 COSMIC
COSN14998895 1094 COSMIC
COSN15380881 1251 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1425437290 1 dbSNP
rs759560918 6 dbSNP
rs1367902197 7 dbSNP
rs745871236 8 dbSNP
rs1322795411 11 dbSNP
rs528647449 12 dbSNP
rs767355862 12 dbSNP
rs1379449526 13 dbSNP
rs757888792 16 dbSNP
rs1434780242 17 dbSNP
rs974606989 18 dbSNP
rs779586971 21 dbSNP
rs1476775605 24 dbSNP
rs1187859847 26 dbSNP
rs1229348692 30 dbSNP
rs1312814638 36 dbSNP
rs1320528954 37 dbSNP
rs987108614 42 dbSNP
rs1482928044 43 dbSNP
rs752569552 43 dbSNP
rs1329670616 49 dbSNP
rs911570738 50 dbSNP
rs1219412229 55 dbSNP
rs1458544361 55 dbSNP
rs964624454 56 dbSNP
rs975068231 60 dbSNP
rs546902943 61 dbSNP
rs925806142 67 dbSNP
rs571590965 68 dbSNP
rs935865702 70 dbSNP
rs1054200457 73 dbSNP
rs893934784 74 dbSNP
rs950151234 76 dbSNP
rs1045675853 79 dbSNP
rs905863997 87 dbSNP
rs1354800411 88 dbSNP
rs190003392 89 dbSNP
rs945447399 92 dbSNP
rs1368833063 93 dbSNP
rs937607663 96 dbSNP
rs1274884453 97 dbSNP
rs1322105204 98 dbSNP
rs1042401495 101 dbSNP
rs550957792 103 dbSNP
rs12929524 105 dbSNP
rs906490080 111 dbSNP
rs1488673644 116 dbSNP
rs1214556654 118 dbSNP
rs368565899 119 dbSNP
rs1033959646 122 dbSNP
rs1358843091 123 dbSNP
rs760225176 133 dbSNP
rs765736478 134 dbSNP
rs1279515953 142 dbSNP
rs1475206036 143 dbSNP
rs994766227 144 dbSNP
rs537152646 146 dbSNP
rs1407026284 148 dbSNP
rs1391166210 149 dbSNP
rs540323579 153 dbSNP
rs771332085 154 dbSNP
rs1173137477 156 dbSNP
rs1027817256 158 dbSNP
rs1008657059 162 dbSNP
rs1420405236 166 dbSNP
rs1191650295 167 dbSNP
rs1018582388 170 dbSNP
rs1268458655 172 dbSNP
rs1209670939 178 dbSNP
rs1333175810 180 dbSNP
rs964771400 181 dbSNP
rs1424783093 185 dbSNP
rs1218867313 189 dbSNP
rs1316683501 195 dbSNP
rs950504577 197 dbSNP
rs1438514911 200 dbSNP
rs1331646625 203 dbSNP
rs1322620653 205 dbSNP
rs1033366878 207 dbSNP
rs974679396 207 dbSNP
rs182392729 208 dbSNP
rs988575316 210 dbSNP
rs1166271401 211 dbSNP
rs1455394973 215 dbSNP
rs1378669369 216 dbSNP
rs573796724 217 dbSNP
rs534795432 218 dbSNP
rs1018630388 220 dbSNP
rs1240425761 221 dbSNP
rs1198865931 228 dbSNP
rs72798129 233 dbSNP
rs186431278 236 dbSNP
rs974368473 246 dbSNP
rs921876597 248 dbSNP
rs1232011286 253 dbSNP
rs937369181 257 dbSNP
rs545462192 258 dbSNP
rs1223030324 259 dbSNP
rs557337334 262 dbSNP
rs1354216908 264 dbSNP
rs575499777 270 dbSNP
rs1304374371 271 dbSNP
rs1403006127 271 dbSNP
rs62056368 273 dbSNP
rs1172444556 274 dbSNP
rs543126643 279 dbSNP
rs1453177037 283 dbSNP
rs561189671 284 dbSNP
rs746633277 286 dbSNP
rs376283545 287 dbSNP
rs930222352 289 dbSNP
rs776161723 290 dbSNP
rs749602122 293 dbSNP
rs114187022 294 dbSNP
rs774988277 297 dbSNP
rs760172433 298 dbSNP
rs767677100 301 dbSNP
rs775675641 303 dbSNP
rs760856908 305 dbSNP
rs1324826819 306 dbSNP
rs764316091 307 dbSNP
rs757372201 311 dbSNP
rs1277933676 312 dbSNP
rs1377892815 313 dbSNP
rs1450480598 314 dbSNP
rs754009031 315 dbSNP
rs757068152 316 dbSNP
rs1329474255 322 dbSNP
rs1227325898 323 dbSNP
rs764997424 324 dbSNP
rs750337656 325 dbSNP
rs1363055330 327 dbSNP
rs779989772 328 dbSNP
rs746465612 329 dbSNP
rs1419414283 330 dbSNP
rs1482344440 336 dbSNP
rs1434429811 338 dbSNP
rs1184464182 339 dbSNP
rs754452531 342 dbSNP
rs780895243 344 dbSNP
rs189662522 348 dbSNP
rs1180212794 353 dbSNP
rs540404753 354 dbSNP
rs771307171 356 dbSNP
rs1215813000 357 dbSNP
rs750443159 357 dbSNP
rs779249242 357 dbSNP
rs780528070 357 dbSNP
rs1291830445 358 dbSNP
rs530039776 358 dbSNP
rs748595015 358 dbSNP
rs769299247 358 dbSNP
rs772983529 358 dbSNP
rs774900228 360 dbSNP
rs1405571648 361 dbSNP
rs370462022 361 dbSNP
rs565282629 361 dbSNP
rs759507460 361 dbSNP
rs767513620 361 dbSNP
rs746270470 363 dbSNP
rs532656391 364 dbSNP
rs750704529 364 dbSNP
rs760562143 364 dbSNP
rs765375529 364 dbSNP
rs1192838105 365 dbSNP
rs201662748 367 dbSNP
rs751657896 367 dbSNP
rs780065474 367 dbSNP
rs368894015 368 dbSNP
rs1432128240 369 dbSNP
rs756557743 370 dbSNP
rs772653230 370 dbSNP
rs1491100286 372 dbSNP
rs374878500 373 dbSNP
rs748884875 373 dbSNP
rs75194070 373 dbSNP
rs773951708 373 dbSNP
rs1309321339 374 dbSNP
rs776150016 375 dbSNP
rs199924629 376 dbSNP
rs760377330 376 dbSNP
rs767330698 376 dbSNP
rs775568236 376 dbSNP
rs1408905850 377 dbSNP
rs760738918 378 dbSNP
rs776438719 378 dbSNP
rs370548510 379 dbSNP
rs753879391 379 dbSNP
rs755151761 379 dbSNP
rs763109290 379 dbSNP
rs768682223 380 dbSNP
rs372208027 382 dbSNP
rs368361570 383 dbSNP
rs1004648374 384 dbSNP
rs1020884273 385 dbSNP
rs1220330648 385 dbSNP
rs753188781 385 dbSNP
rs767895242 385 dbSNP
rs769828163 385 dbSNP
rs1019139343 386 dbSNP
rs756584785 387 dbSNP
rs775555489 387 dbSNP
rs372438870 388 dbSNP
rs778245134 388 dbSNP
rs376973791 390 dbSNP
rs370120877 391 dbSNP
rs766238922 392 dbSNP
rs756947585 393 dbSNP
rs778752334 393 dbSNP
rs957294195 393 dbSNP
rs1440104073 394 dbSNP
rs745370728 394 dbSNP
rs751565808 394 dbSNP
rs771673066 396 dbSNP
rs1479666096 397 dbSNP
rs774879174 397 dbSNP
rs1210321496 398 dbSNP
rs1191013795 399 dbSNP
rs746921314 400 dbSNP
rs754499405 400 dbSNP
rs780618980 402 dbSNP
rs549096750 403 dbSNP
rs768497936 403 dbSNP
rs567229805 404 dbSNP
rs777594577 409 dbSNP
rs1370712370 410 dbSNP
rs746173841 411 dbSNP
rs967643384 414 dbSNP
rs1305763010 415 dbSNP
rs772566942 416 dbSNP
rs1351276649 419 dbSNP
rs1436697766 420 dbSNP
rs373402143 421 dbSNP
rs1368438982 426 dbSNP
rs780700096 427 dbSNP
rs1477284061 432 dbSNP
rs776384645 435 dbSNP
rs995948460 435 dbSNP
rs11559001 436 dbSNP
rs761982940 438 dbSNP
rs769946168 440 dbSNP
rs773428203 441 dbSNP
rs766218374 442 dbSNP
rs892845397 443 dbSNP
rs751490326 445 dbSNP
rs534860404 446 dbSNP
rs1466529001 447 dbSNP
rs767517958 448 dbSNP
rs1189828169 449 dbSNP
rs752095106 450 dbSNP
rs375977133 451 dbSNP
rs1165680570 452 dbSNP
rs753614733 453 dbSNP
rs1405605780 455 dbSNP
rs758824918 459 dbSNP
rs1392105660 463 dbSNP
rs1436968886 466 dbSNP
rs1321193669 468 dbSNP
rs553191934 473 dbSNP
rs1219433476 474 dbSNP
rs747521777 475 dbSNP
rs1286044407 479 dbSNP
rs1357127424 482 dbSNP
rs1055136588 483 dbSNP
rs769004925 484 dbSNP
rs1271477973 486 dbSNP
rs1020188455 489 dbSNP
rs781733910 491 dbSNP
rs748109676 496 dbSNP
rs775395310 498 dbSNP
rs1353027526 499 dbSNP
rs761632809 500 dbSNP
rs1034198691 502 dbSNP
rs1238757887 503 dbSNP
rs1451866850 505 dbSNP
rs571424053 506 dbSNP
rs1165960511 507 dbSNP
rs749558904 507 dbSNP
rs770678682 508 dbSNP
rs773974748 509 dbSNP
rs766582798 510 dbSNP
rs1159638388 511 dbSNP
rs759393681 512 dbSNP
rs1255506677 513 dbSNP
rs974185960 514 dbSNP
rs1398939574 518 dbSNP
rs767295661 520 dbSNP
rs775506722 523 dbSNP
rs1447365482 524 dbSNP
rs1261445121 525 dbSNP
rs760260462 526 dbSNP
rs1352599766 529 dbSNP
rs372944944 532 dbSNP
rs1267903101 533 dbSNP
rs753520716 534 dbSNP
rs757012577 535 dbSNP
rs751939187 536 dbSNP
rs757752682 543 dbSNP
rs764973702 545 dbSNP
rs781720902 546 dbSNP
rs912841120 547 dbSNP
rs538935150 549 dbSNP
rs1040243716 551 dbSNP
rs1316159423 552 dbSNP
rs556951388 552 dbSNP
rs1206888470 553 dbSNP
rs774614496 553 dbSNP
rs755374540 554 dbSNP
rs746296561 555 dbSNP
rs781545846 556 dbSNP
rs748746338 557 dbSNP
rs555439055 558 dbSNP
rs542642543 559 dbSNP
rs555074923 560 dbSNP
rs1041384519 564 dbSNP
rs572999070 566 dbSNP
rs1011463811 567 dbSNP
rs1334394720 568 dbSNP
rs560118092 569 dbSNP
rs1275760170 571 dbSNP
rs1344961993 572 dbSNP
rs967316888 574 dbSNP
rs1034555690 576 dbSNP
rs1466888762 577 dbSNP
rs759688540 577 dbSNP
rs981714014 583 dbSNP
rs1035493156 584 dbSNP
rs180957182 585 dbSNP
rs1205479519 587 dbSNP
rs1268275170 593 dbSNP
rs990879786 595 dbSNP
rs916596834 596 dbSNP
rs1371441800 597 dbSNP
rs1302489447 599 dbSNP
rs763668867 601 dbSNP
rs951341715 602 dbSNP
rs1416892675 603 dbSNP
rs1392498689 606 dbSNP
rs1200779397 609 dbSNP
rs776242295 610 dbSNP
rs1453734125 614 dbSNP
rs761430632 617 dbSNP
rs878904177 618 dbSNP
rs1193454057 621 dbSNP
rs1333246765 623 dbSNP
rs1452988281 625 dbSNP
rs984791748 626 dbSNP
rs965580330 628 dbSNP
rs764739057 631 dbSNP
rs1309925633 634 dbSNP
rs940945408 636 dbSNP
rs565146645 639 dbSNP
rs1324621071 641 dbSNP
rs921426429 643 dbSNP
rs1232827739 645 dbSNP
rs1040953126 649 dbSNP
rs1231757491 649 dbSNP
rs1378848125 654 dbSNP
rs755283700 656 dbSNP
rs936885966 657 dbSNP
rs1250229686 666 dbSNP
rs768840220 667 dbSNP
rs767972392 668 dbSNP
rs945811630 669 dbSNP
rs1281937517 671 dbSNP
rs1326979748 671 dbSNP
rs1267861617 672 dbSNP
rs1467862312 673 dbSNP
rs532539344 674 dbSNP
rs1158769851 675 dbSNP
rs906877565 675 dbSNP
rs1449948805 677 dbSNP
rs1169867296 680 dbSNP
rs1239337300 681 dbSNP
rs2516825 682 dbSNP
rs1459694397 686 dbSNP
rs185172960 687 dbSNP
rs530554798 688 dbSNP
rs749304106 689 dbSNP
rs1322913573 691 dbSNP
rs757358362 693 dbSNP
rs761585819 694 dbSNP
rs1294254484 695 dbSNP
rs1350295879 696 dbSNP
rs1305239733 697 dbSNP
rs779002750 698 dbSNP
rs1265630354 699 dbSNP
rs1333951285 703 dbSNP
rs1211611570 705 dbSNP
rs1172254947 708 dbSNP
rs11559000 709 dbSNP
rs573562358 710 dbSNP
rs1185799414 711 dbSNP
rs1259824057 714 dbSNP
rs1425600158 715 dbSNP
rs779941779 721 dbSNP
rs1417443868 722 dbSNP
rs767565120 723 dbSNP
rs1161833929 724 dbSNP
rs746832741 727 dbSNP
rs1331885126 729 dbSNP
rs1453753849 731 dbSNP
rs1475218783 734 dbSNP
rs1287623965 738 dbSNP
rs903105023 738 dbSNP
rs768666235 739 dbSNP
rs1185706859 743 dbSNP
rs1489254488 744 dbSNP
rs549133607 748 dbSNP
rs1026837821 749 dbSNP
rs528201798 751 dbSNP
rs1354459438 752 dbSNP
rs1304968420 754 dbSNP
rs1231004379 755 dbSNP
rs546668737 758 dbSNP
rs760467318 762 dbSNP
rs1035950201 763 dbSNP
rs1258873117 769 dbSNP
rs1019625002 770 dbSNP
rs1290003580 772 dbSNP
rs34646740 774 dbSNP
rs1182553486 775 dbSNP
rs761345010 776 dbSNP
rs1343820406 777 dbSNP
rs776723157 778 dbSNP
rs958498339 779 dbSNP
rs1184602894 780 dbSNP
rs991306903 781 dbSNP
rs1418826306 782 dbSNP
rs1474270510 783 dbSNP
rs865866085 783 dbSNP
rs571491685 785 dbSNP
rs1361426043 786 dbSNP
rs1466967174 789 dbSNP
rs1312961122 792 dbSNP
rs1374261627 794 dbSNP
rs958552004 795 dbSNP
rs1211840920 796 dbSNP
rs754944046 797 dbSNP
rs867586858 799 dbSNP
rs1289800512 801 dbSNP
rs769403121 802 dbSNP
rs1214564057 803 dbSNP
rs11144 806 dbSNP
rs1304551460 807 dbSNP
rs1313888930 809 dbSNP
rs1210661783 811 dbSNP
rs1279781319 812 dbSNP
rs1433876788 816 dbSNP
rs1393218208 821 dbSNP
rs1484731612 824 dbSNP
rs1323515779 825 dbSNP
rs762705656 828 dbSNP
rs1252779347 832 dbSNP
rs1480400861 833 dbSNP
rs945759315 834 dbSNP
rs907837149 835 dbSNP
rs1427617638 836 dbSNP
rs1434267710 837 dbSNP
rs1173546880 838 dbSNP
rs765975427 840 dbSNP
rs550888984 842 dbSNP
rs928293818 843 dbSNP
rs1309267107 844 dbSNP
rs1354785963 845 dbSNP
rs940944269 846 dbSNP
rs1296257783 849 dbSNP
rs1056099675 850 dbSNP
rs1369453900 852 dbSNP
rs544593057 853 dbSNP
rs931236001 854 dbSNP
rs1345876015 856 dbSNP
rs1230727473 857 dbSNP
rs753357322 860 dbSNP
rs1048219563 861 dbSNP
rs1202623457 862 dbSNP
rs1248877216 863 dbSNP
rs923457051 864 dbSNP
rs932182974 866 dbSNP
rs1050549472 868 dbSNP
rs1019741734 869 dbSNP
rs759302895 871 dbSNP
rs1297139351 872 dbSNP
rs1451840079 873 dbSNP
rs370477486 877 dbSNP
rs1419537141 879 dbSNP
rs1409072760 880 dbSNP
rs191275763 883 dbSNP
rs1295259007 887 dbSNP
rs1041777380 891 dbSNP
rs112725079 892 dbSNP
rs1393107373 893 dbSNP
rs1441330794 894 dbSNP
rs902824870 895 dbSNP
rs1421149737 896 dbSNP
rs1251310510 898 dbSNP
rs1011114388 899 dbSNP
rs1482133473 901 dbSNP
rs1009543588 903 dbSNP
rs1260144052 910 dbSNP
rs1437102712 911 dbSNP
rs561443477 914 dbSNP
rs1338810669 915 dbSNP
rs1471579465 920 dbSNP
rs966881867 920 dbSNP
rs1313397389 921 dbSNP
rs1317195671 921 dbSNP
rs1389132840 921 dbSNP
rs1414165397 921 dbSNP
rs71650270 921 dbSNP
rs779312440 921 dbSNP
rs1373361928 925 dbSNP
rs977126788 929 dbSNP
rs1454143804 933 dbSNP
rs1158664715 935 dbSNP
rs1160090742 935 dbSNP
rs1380325078 936 dbSNP
rs11558997 937 dbSNP
rs1189258693 940 dbSNP
rs1022324699 944 dbSNP
rs1254481601 947 dbSNP
rs1312774764 947 dbSNP
rs968352260 948 dbSNP
rs1398145925 949 dbSNP
rs1335359004 951 dbSNP
rs1335555772 953 dbSNP
rs1440224415 956 dbSNP
rs928426456 963 dbSNP
rs1354449302 964 dbSNP
rs960078084 965 dbSNP
rs1232581448 969 dbSNP
rs1353437354 977 dbSNP
rs1003215218 978 dbSNP
rs1382512222 980 dbSNP
rs1057099164 992 dbSNP
rs894378576 994 dbSNP
rs1455904492 1004 dbSNP
rs1396744293 1007 dbSNP
rs915565115 1008 dbSNP
rs1367193326 1010 dbSNP
rs1195957359 1011 dbSNP
rs1012796363 1012 dbSNP
rs1347108310 1015 dbSNP
rs2516826 1017 dbSNP
rs1261555313 1020 dbSNP
rs1206406210 1023 dbSNP
rs1026812342 1024 dbSNP
rs536699471 1025 dbSNP
rs952117313 1026 dbSNP
rs1200815758 1030 dbSNP
rs1249474094 1035 dbSNP
rs554657364 1039 dbSNP
rs1048377702 1040 dbSNP
rs1252944852 1044 dbSNP
rs1015358651 1048 dbSNP
rs962044563 1049 dbSNP
rs572861238 1050 dbSNP
rs1208789712 1054 dbSNP
rs1293220775 1055 dbSNP
rs976478602 1057 dbSNP
rs1326863400 1060 dbSNP
rs1460924181 1062 dbSNP
rs1453245375 1065 dbSNP
rs1170145886 1067 dbSNP
rs901230898 1072 dbSNP
rs1462982197 1079 dbSNP
rs373923095 1082 dbSNP
rs1376426973 1083 dbSNP
rs531989184 1085 dbSNP
rs1455882116 1097 dbSNP
rs1253173579 1098 dbSNP
rs1173690668 1102 dbSNP
rs1449361280 1106 dbSNP
rs1049707735 1107 dbSNP
rs183032385 1107 dbSNP
rs558591934 1114 dbSNP
rs953620249 1118 dbSNP
rs1272419559 1120 dbSNP
rs1445064231 1121 dbSNP
rs1348326971 1123 dbSNP
rs368413691 1123 dbSNP
rs796911804 1123 dbSNP
rs1436115259 1124 dbSNP
rs1377985782 1127 dbSNP
rs1440243071 1128 dbSNP
rs986269437 1129 dbSNP
rs145590189 1133 dbSNP
rs914701960 1135 dbSNP
rs1043917 1136 dbSNP
rs1332910838 1137 dbSNP
rs1172619066 1138 dbSNP
rs1043920 1140 dbSNP
rs947142270 1142 dbSNP
rs1041436862 1143 dbSNP
rs544455831 1144 dbSNP
rs1250713585 1147 dbSNP
rs1234090514 1148 dbSNP
rs1181835780 1150 dbSNP
rs1043927 1156 dbSNP
rs1043929 1159 dbSNP
rs563240749 1162 dbSNP
rs938383635 1164 dbSNP
rs1200359298 1166 dbSNP
rs1258291468 1170 dbSNP
rs966831022 1174 dbSNP
rs1056816288 1175 dbSNP
rs1188730779 1176 dbSNP
rs749983586 1179 dbSNP
rs894431151 1180 dbSNP
rs575020721 1182 dbSNP
rs542465986 1188 dbSNP
rs1048261962 1192 dbSNP
rs1191370326 1193 dbSNP
rs1281523451 1200 dbSNP
rs1043958 1205 dbSNP
rs1006731596 1213 dbSNP
rs1239781047 1214 dbSNP
rs1349968546 1215 dbSNP
rs1213099790 1216 dbSNP
rs1306707636 1218 dbSNP
rs1015040741 1219 dbSNP
rs1292265983 1221 dbSNP
rs1035610825 1222 dbSNP
rs1335663442 1222 dbSNP
rs959782336 1223 dbSNP
rs1271590184 1225 dbSNP
rs116687647 1226 dbSNP
rs1218931088 1227 dbSNP
rs991687867 1229 dbSNP
rs1189940560 1232 dbSNP
rs915571251 1240 dbSNP
rs756596520 1241 dbSNP
rs1256746394 1242 dbSNP
rs1242266733 1243 dbSNP
rs1474779294 1244 dbSNP
rs952386560 1246 dbSNP
rs962421983 1248 dbSNP
rs1461599536 1249 dbSNP
rs1163948943 1251 dbSNP
rs754413025 1253 dbSNP
rs560867162 1254 dbSNP
rs1030252361 1256 dbSNP
rs908436991 1260 dbSNP
rs1209321418 1261 dbSNP
rs1318883966 1262 dbSNP
rs528061657 1263 dbSNP
rs546735865 1264 dbSNP
rs939935903 1265 dbSNP
rs1456438291 1267 dbSNP
rs1385781904 1269 dbSNP
rs953631651 1270 dbSNP
rs986320405 1271 dbSNP
rs750581979 1272 dbSNP
rs1166408827 1275 dbSNP
rs1475267067 1276 dbSNP
rs1232842162 1278 dbSNP
rs188467095 1280 dbSNP
rs1331659880 1281 dbSNP
rs1242559172 1283 dbSNP
rs532367221 1283 dbSNP
rs764746927 1285 dbSNP
rs1284161149 1287 dbSNP
rs1266490248 1288 dbSNP
rs922429052 1289 dbSNP
rs550500316 1290 dbSNP
rs531758080 1291 dbSNP
rs1213068903 1292 dbSNP
rs1050302089 1293 dbSNP
rs1258919191 1295 dbSNP
rs1475336842 1297 dbSNP
rs1186763750 1298 dbSNP
rs1434858438 1299 dbSNP
rs968941262 1300 dbSNP
rs1473432146 1301 dbSNP
rs1158880848 1303 dbSNP
rs1327508228 1306 dbSNP
rs1384204551 1306 dbSNP
rs893792025 1310 dbSNP
rs1044086 1311 dbSNP
rs1376128667 1312 dbSNP
rs1414464896 1313 dbSNP
rs569174270 1314 dbSNP
rs1352763084 1318 dbSNP
rs752039044 1321 dbSNP
rs1279300638 1322 dbSNP
rs924423932 1323 dbSNP
rs1221381847 1325 dbSNP
rs902744487 1326 dbSNP
rs757647079 1327 dbSNP
rs374571060 1329 dbSNP
rs1291276971 1330 dbSNP
rs1035192971 1334 dbSNP
rs1209760626 1341 dbSNP
rs781262586 1343 dbSNP
rs536165720 1349 dbSNP
rs769154222 1350 dbSNP
rs1340499874 1352 dbSNP
rs1305162237 1357 dbSNP
rs895338004 1361 dbSNP
rs1362949267 1362 dbSNP
rs1056826491 1363 dbSNP
rs1291338531 1364 dbSNP
rs772737092 1365 dbSNP
rs543837739 1366 dbSNP
rs948636872 1367 dbSNP
rs1311085465 1368 dbSNP
rs1372679926 1369 dbSNP
rs770556854 1370 dbSNP
rs748267127 1371 dbSNP
rs755732205 1373 dbSNP
rs752858264 1376 dbSNP
rs1328622043 1380 dbSNP
rs866965556 1383 dbSNP
rs1048315210 1385 dbSNP
rs888350880 1386 dbSNP
rs1481661557 1388 dbSNP
rs1304767442 1389 dbSNP
rs563214572 1392 dbSNP
rs1232968639 1393 dbSNP
rs1482278553 1394 dbSNP
rs1282966635 1395 dbSNP
rs1037262520 1396 dbSNP
rs1234546477 1398 dbSNP
rs761019513 1400 dbSNP
rs1341053875 1402 dbSNP
rs1298778159 1408 dbSNP
rs1196003437 1409 dbSNP
rs1249636654 1413 dbSNP
rs897915020 1414 dbSNP
rs1195473318 1415 dbSNP
rs1373440054 1416 dbSNP
rs1307322208 1417 dbSNP
rs997516105 1419 dbSNP
rs1453687287 1421 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' auaacguagauagGUUUGGAa 5'
                       ||||||| 
Target 5' ---------cacaCAAACCUg 3'
1 - 12
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_002383 | 3UTR | GUCAGACCUGACCCCACACAAACCUGUCCCCUCGGUUGUGUUGAAGUCCCCUGGACAGUGGGCAGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903826
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID21_NS
Location of target site NM_002383 | 3UTR | AAACCUGUCCCCUCGGUUGUGUUGAAGUCCCCUGGACAGUGGGCAGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_002383 | 3UTR | CCUCUUCUGUCAGACCUGACCCCACACAAACCUGUCCCCUCGGUUGUGUUGAAGUCCCCUGGACAGUGGGCAGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_002383 | 3UTR | GUCAGACCUGACCCCACACAAACCUGUCCCCUCGGUUGUGUUGAAGUCCCCUGGACAGUGGGCAGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_002383 | 3UTR | UUAACGAUUUGUUUCUCCUGCUCCUCUUCUGUCAGACCUGACCCCACACAAACCUGUCCCCUCGGUUGUGUUGAAGUCCCCUGGACAGUGGGCAGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_002383 | 3UTR | UCCUCUUCUGUCAGACCUGACCCCACACAAACCUGUCCCCUCGGUUGUGUUGAAGUCCCCUGGACAGUGGGCAGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000219782.6 | 3UTR | CACACAAACCUGUCCCCUCGGUUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
81 hsa-miR-4464 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056004 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT061568 BTG2 BTG anti-proliferation factor 2 2 2
MIRT078651 ICT1 mitochondrial ribosomal protein L58 2 2
MIRT087551 YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta 2 4
MIRT088139 SEPT2 septin 2 2 4
MIRT095089 SEC24A SEC24 homolog A, COPII coat complex component 2 4
MIRT099065 FOXC1 forkhead box C1 2 4
MIRT150194 MIDN midnolin 2 2
MIRT178173 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT178942 C11ORF57 chromosome 11 open reading frame 57 2 2
MIRT188776 SESN2 sestrin 2 2 2
MIRT267026 EFHD2 EF-hand domain family member D2 2 2
MIRT307213 ACVR2B activin A receptor type 2B 2 2
MIRT324750 ACER2 alkaline ceramidase 2 2 2
MIRT442732 TEAD1 TEA domain transcription factor 1 2 2
MIRT444087 C12orf73 chromosome 12 open reading frame 73 2 2
MIRT445527 KLF9 Kruppel like factor 9 2 2
MIRT449604 INIP INTS3 and NABP interacting protein 2 2
MIRT451129 ZNF99 zinc finger protein 99 2 2
MIRT452271 RPL30 ribosomal protein L30 2 2
MIRT452486 DDX4 DEAD-box helicase 4 2 2
MIRT454868 DNAJC15 DnaJ heat shock protein family (Hsp40) member C15 2 6
MIRT455773 TSPAN6 tetraspanin 6 2 4
MIRT463844 WRN Werner syndrome RecQ like helicase 2 2
MIRT465036 TTC39C tetratricopeptide repeat domain 39C 2 2
MIRT465176 TRPV2 transient receptor potential cation channel subfamily V member 2 2 4
MIRT465294 TRIB3 tribbles pseudokinase 3 2 4
MIRT467931 SLC16A7 solute carrier family 16 member 7 2 2
MIRT471906 NUAK2 NUAK family kinase 2 2 2
MIRT472724 MTUS1 microtubule associated scaffold protein 1 2 6
MIRT479785 CCND1 cyclin D1 2 2
MIRT482446 ADM adrenomedullin 2 10
MIRT485365 MYLIP myosin regulatory light chain interacting protein 2 12
MIRT498399 KIF6 kinesin family member 6 2 2
MIRT503202 ACTB actin beta 2 6
MIRT503819 TMEM242 transmembrane protein 242 2 2
MIRT504706 ZNF117 zinc finger protein 117 2 2
MIRT507802 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT509968 KANSL1L KAT8 regulatory NSL complex subunit 1 like 2 4
MIRT517306 ELF4 E74 like ETS transcription factor 4 2 6
MIRT523900 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 6
MIRT532018 NOX5 NADPH oxidase 5 2 2
MIRT535334 PHACTR2 phosphatase and actin regulator 2 2 2
MIRT536944 HCN4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 2 4
MIRT539322 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT540189 GSTM4 glutathione S-transferase mu 4 2 2
MIRT545015 ZNF439 zinc finger protein 439 2 2
MIRT545265 TRIM36 tripartite motif containing 36 2 4
MIRT547230 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 4
MIRT548425 ELOVL5 ELOVL fatty acid elongase 5 2 2
MIRT549910 ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide 2 2
MIRT550185 TMEM106C transmembrane protein 106C 2 2
MIRT550775 ENOX2 ecto-NOX disulfide-thiol exchanger 2 2 4
MIRT552401 ZNF487P zinc finger protein 487 1 1
MIRT554782 RHEBP1 RHEB pseudogene 1 2 4
MIRT557311 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT558635 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT563168 RPS14 ribosomal protein S14 2 2
MIRT564886 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 2
MIRT565778 SEPHS1 selenophosphate synthetase 1 2 2
MIRT566480 PDCD4 programmed cell death 4 2 2
MIRT567206 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT568931 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT570698 FBXO41 F-box protein 41 2 2
MIRT573474 MTRNR2L9 MT-RNR2-like 9 2 2
MIRT576170 Hmox1 heme oxygenase 1 2 2
MIRT607555 GLI2 GLI family zinc finger 2 2 2
MIRT608203 ERBB2 erb-b2 receptor tyrosine kinase 2 2 2
MIRT609779 VWC2L von Willebrand factor C domain containing protein 2 like 2 4
MIRT616312 CELF2 CUGBP Elav-like family member 2 2 2
MIRT617190 CDH13 cadherin 13 2 2
MIRT626842 RPLP1 ribosomal protein lateral stalk subunit P1 2 2
MIRT636438 MARCH1 membrane associated ring-CH-type finger 1 2 2
MIRT639101 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT691018 CRTC3 CREB regulated transcription coactivator 3 2 2
MIRT700008 RPS21 ribosomal protein S21 2 2
MIRT701144 PANK1 pantothenate kinase 1 2 2
MIRT712691 NUDT7 nudix hydrolase 7 2 2
MIRT715505 MAZ MYC associated zinc finger protein 2 2
MIRT722509 PTPRC protein tyrosine phosphatase, receptor type C 2 2
MIRT724982 TNS1 tensin 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miR-4464 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4464 Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)

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