pre-miRNA Information
pre-miRNA hsa-mir-2115   
Genomic Coordinates chr3: 48316360 - 48316459
Description Homo sapiens miR-2115 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-2115-5p
Sequence 21| AGCUUCCAUGACUCCUGAUGGA |42
Evidence Experimental
Experiments 454
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs372327506 9 dbSNP
rs1259362191 10 dbSNP
rs1215292065 12 dbSNP
rs1197671843 16 dbSNP
rs1468768022 20 dbSNP
rs1273755407 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FAM13A   
Synonyms ARHGAP48, FAM13A1
Description family with sequence similarity 13 member A
Transcript NM_001015045   
Other Transcripts NM_014883   
Expression
Putative miRNA Targets on FAM13A
3'UTR of FAM13A
(miRNA target sites are highlighted)
>FAM13A|NM_001015045|3'UTR
   1 GGGGCATGGCCAAGCACAGGGGGCTGGCAGCTGCGGTGAGAGTTTACTGTCCCCAGAGAAAGTGCAGCTCTGGAAGGCAG
  81 CCTTGGGGCTGGCCCTGCAAAGCATGCAGCCCTTCTGCCTCTAGACCATTTGGCATCGGCTCCTGTTTCCATTGCCTGCC
 161 TTAGAAACTGGCTGGAAGAAGACAATGTGACCTGACTTAGGCATTTTGTAATTGGAAAGTCAAGACTGCAGTATGTGCAC
 241 ATGCGCACGCGCATGCACGCACACACACACACAGTAGTGGAGCTTTCCTAACACTAGCAGAGATTAATCACTACATTAGA
 321 CAACACTCATCTACAGAGAATATACACTGTTCTTCCCTGGATAACTGAGAAACAAGAGACCATTCTCTGTCTAACTGTGA
 401 TAAAAACAAGCTCAGGACTTTATTCTATAGAGCAAACTTGCTGTGGAGGGCCATGCTCTCCTTGGACCCAGTTAACTGCA
 481 AACGTGCATTGGAGCCCTATTTGCTGCCGCTGCCATTCTAGTGACCTTTCCACAGAGCTGCGCCTTCCTCACGTGTGTGA
 561 AAGGTTTTCCCCTTCAGCCCTCAGGTAGATGGAAGCTGCATCTGCCCACGATGGCAGTGCAGTCATCATCTTCAGGATGT
 641 TTCTTCAGGACTTCCTCAGCTGACAAGGAATTTTGGTCCCTGCCTAGGACCGGGTCATCTGCAGAGGACAGAGAGATGGT
 721 AAGCAGCTGTATGAATGCTGATTTTAAAACCAGGTCATGGGAGAAGAGCCTGGAGATTCTTTCCTGAACACTGACTGCAC
 801 TTACCAGTCTGATTTTATCGTCAAACACCAAGCCAGGCTAGCATGCTCATGGCAATCTGTTTGGGGCTGTTTTGTTGTGG
 881 CACTAGCCAAACATAAAGGGGCTTAAGTCAGCCTGCATACAGAGGATCGGGGAGAGAAGGGGCCTGTGTTCTCAGCCTCC
 961 TGAGTACTTACCAGAGTTTAATTTTTTTAAAAAAAATCTGCACTAAAATCCCCAAACTGACAGGTAAATGTAGCCCTCAG
1041 AGCTCAGCCCAAGGCAGAATCTAAATCACACTATTTTCGAGATCATGTATAAAAAGAAAAAAAAGAAGTCATGCTGTGTG
1121 GCCAATTATAATTTTTTTCAAAGACTTTGTCACAAAACTGTCTATATTAGACATTTTGGAGGGACCAGGAAATGTAAGAC
1201 ACCAAATCCTCCATCTCTTCAGTGTGCCTGATGTCACCTCATGATTTGCTGTTACTTTTTTAACTCCTGCGCCAAGGACA
1281 GTGGGTTCTGTGTCCACCTTTGTGCTTTGCGAGGCCGAGCCCAGGCATCTGCTCGCCTGCCACGGCTGACCAGAGAAGGT
1361 GCTTCAGGAGCTCTGCCTTAGACGACGTGTTACAGTATGAACACACAGCAGAGGCACCCTCGTATGTTTTGAAAGTTGCC
1441 TTCTGAAAGGGCACAGTTTTAAGGAAAAGAAAAAGAATGTAAAACTATACTGACCCGTTTTCAGTTTTAAAGGGTCGTGA
1521 GAAACTGGCTGGTCCAATGGGATTTACAGCAACATTTTCCATTGCTGAAGTGAGGTAGCAGCTCTCTTCTGTCAGCTGAA
1601 TGTTAAGGATGGGGAAAAAGAATGCCTTTAAGTTTGCTCTTAATCGTATGGAAGCTTGAGCTATGTGTTGGAAGTGCCCT
1681 GGTTTTAATCCATACACAAAGACGGTACATAATCCTACAGGTTTAAATGTACATAAAAATATAGTTTGGAATTCTTTGCT
1761 CTACTGTTTACATTGCAGATTGCTATAATTTCAAGGAGTGAGATTATAAATAAAATGATGCACTTTAGGATGTTTCCTAT
1841 TTTTGAAATCTGAACATGAATCATTCACATGACCAAAAATTGTGTTTTTTTAAAAATACATGTCTAGTCTGTCCTTTAAT
1921 AGCTCTCTTAAATAAGCTATGATATTAATCAGATCATTACCAGTTAGCTTTTAAAGCACATTTGTTTAAGACTATGTTTT
2001 TGGAAAAATACGCTACAGAATTTTTTTTTAAGCTACAAATAAATGAGATGCTACTAATTGTTTTGGAATCTGTTGTTTCT
2081 GCCAAAGGTAAATTAACTAAAGATTTATTCAGGAATCCCCATTTGAATTTGTATGATTCAATAAAAGAAAACACCAAGTA
2161 AGTTATATAAAATAAATTGTGTATGAGATGTTGTGTTTTCCTTTGTAATTTCCACTAACTAACTAACTAACTTATATTCT
2241 TCATGGAATGGAGCCCAGAAGAAATGAGAGGAAGCCCTTTTCACACTAGATCTTATTTGAAGAAATGTTTGTTAGTCAGT
2321 CAGTCAGTGGTTTCTGGCTCTGCCGAGGGAGATGTGTTCCCCAGCAACCATTTCTGCAGCCCAGAATCTCAAGGCACTAG
2401 AGGCGGTGTCTTAATTAATTGGCTTCACAAAGACAAAATGCTCTGGACTGGGATTTTTCCTTTGCTGTGTTGGGAATATG
2481 TGTTTATTAATTAGCACATGCCAACAAAATAAATGTCAAGAGTTATTTCATAAGTGTAAGTAAACTTAAGAATTAAAGAG
2561 TGCAGACTTATAATTTTCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGUAGUCC-UCAGUACCUUCGa 5'
            | ||||| ||  |||||||| 
Target 5' gcCCTCAGGTAG--ATGGAAGCt 3'
577 - 597 164.00 -22.80
2
miRNA  3' agguAGUCCUCAGUACCUUCGa 5'
              |:|   || |||||||| 
Target 5' gctcTTAATCGT-ATGGAAGCt 3'
1636 - 1656 149.00 -14.10
3
miRNA  3' aggUAGUCCUCAGUACCUUCga 5'
             | |||  |||||||:||  
Target 5' aaaACCAG--GTCATGGGAGaa 3'
746 - 765 131.00 -17.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30505075 4 COSMIC
COSN4893738 19 COSMIC
COSN26975692 25 COSMIC
COSN31505405 27 COSMIC
COSN30107741 28 COSMIC
COSN30620348 33 COSMIC
COSN30605158 35 COSMIC
COSN31610424 51 COSMIC
COSN8491509 248 COSMIC
COSN30130135 259 COSMIC
COSN519243 260 COSMIC
COSN5579746 367 COSMIC
COSN26563883 468 COSMIC
COSN31521369 552 COSMIC
COSN2048927 576 COSMIC
COSN30754559 667 COSMIC
COSN1302701 765 COSMIC
COSN17181885 769 COSMIC
COSN24300759 928 COSMIC
COSN31563866 981 COSMIC
COSN6509697 988 COSMIC
COSN31489456 989 COSMIC
COSN31523496 1076 COSMIC
COSN31522600 1096 COSMIC
COSN31515562 1143 COSMIC
COSN31544682 1162 COSMIC
COSN16668987 1496 COSMIC
COSN216858 1553 COSMIC
COSN6847527 1582 COSMIC
COSN26581810 1706 COSMIC
COSN29714718 1735 COSMIC
COSN10036928 1792 COSMIC
COSN20100342 1881 COSMIC
COSN6847526 2137 COSMIC
COSN30174353 2139 COSMIC
COSN20100341 2155 COSMIC
COSN6847525 2156 COSMIC
COSN27331397 2229 COSMIC
COSN20100340 2230 COSMIC
COSN10036927 2414 COSMIC
COSN32061372 2548 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs767397872 1 dbSNP
rs761720527 2 dbSNP
rs562487263 3 dbSNP
rs749295751 5 dbSNP
rs73841658 8 dbSNP
rs1472264161 9 dbSNP
rs1235348469 14 dbSNP
rs368002011 15 dbSNP
rs770041835 16 dbSNP
rs746282559 17 dbSNP
rs573977255 23 dbSNP
rs9224 25 dbSNP
rs747540136 26 dbSNP
rs778357921 30 dbSNP
rs1481702269 32 dbSNP
rs754551092 34 dbSNP
rs141659205 35 dbSNP
rs1011474529 39 dbSNP
rs182426402 40 dbSNP
rs1360178074 41 dbSNP
rs1421988282 42 dbSNP
rs750237201 47 dbSNP
rs767370996 48 dbSNP
rs764659890 52 dbSNP
rs1355936527 55 dbSNP
rs920774354 55 dbSNP
rs1160615384 83 dbSNP
rs1039647394 103 dbSNP
rs374661297 104 dbSNP
rs910990875 105 dbSNP
rs768172752 107 dbSNP
rs1051848545 108 dbSNP
rs986446914 111 dbSNP
rs1214947088 117 dbSNP
rs1253302558 117 dbSNP
rs1207556412 126 dbSNP
rs1463194873 127 dbSNP
rs192297613 137 dbSNP
rs913123002 138 dbSNP
rs988730977 159 dbSNP
rs4693968 164 dbSNP
rs957557064 166 dbSNP
rs1344221016 170 dbSNP
rs148143415 172 dbSNP
rs974729480 176 dbSNP
rs942253430 178 dbSNP
rs1475342812 180 dbSNP
rs1187496684 181 dbSNP
rs909472107 185 dbSNP
rs1431136370 186 dbSNP
rs3017895 193 dbSNP
rs950907691 194 dbSNP
rs1001803370 196 dbSNP
rs1344547883 198 dbSNP
rs1431323384 204 dbSNP
rs760422480 207 dbSNP
rs115027241 212 dbSNP
rs1024831232 214 dbSNP
rs1367381508 218 dbSNP
rs1014182600 222 dbSNP
rs1348769602 229 dbSNP
rs1319100020 231 dbSNP
rs767428164 233 dbSNP
rs1217096329 240 dbSNP
rs568122800 241 dbSNP
rs1801917 243 dbSNP
rs886451778 244 dbSNP
rs1467407282 245 dbSNP
rs189212160 245 dbSNP
rs1395313613 246 dbSNP
rs1455259701 248 dbSNP
rs995045960 249 dbSNP
rs535006202 250 dbSNP
rs570689270 251 dbSNP
rs552529352 252 dbSNP
rs533035380 253 dbSNP
rs1439882743 258 dbSNP
rs761658148 258 dbSNP
rs933608575 259 dbSNP
rs1372032200 260 dbSNP
rs6830008 261 dbSNP
rs999211354 261 dbSNP
rs1350020777 268 dbSNP
rs1051393777 274 dbSNP
rs1213474226 274 dbSNP
rs1286952519 274 dbSNP
rs140652030 274 dbSNP
rs762667944 274 dbSNP
rs997586214 274 dbSNP
rs1231857907 275 dbSNP
rs150707965 275 dbSNP
rs1470184327 300 dbSNP
rs988510270 315 dbSNP
rs183663623 324 dbSNP
rs1254074452 326 dbSNP
rs1415583283 330 dbSNP
rs1038972491 337 dbSNP
rs1165423491 338 dbSNP
rs935920562 353 dbSNP
rs925888162 354 dbSNP
rs746621217 355 dbSNP
rs909252876 376 dbSNP
rs1443028175 393 dbSNP
rs757927328 393 dbSNP
rs749985366 397 dbSNP
rs929573978 400 dbSNP
rs1233167848 407 dbSNP
rs771400475 415 dbSNP
rs1226406255 416 dbSNP
rs982028241 417 dbSNP
rs1193773418 421 dbSNP
rs1271841388 422 dbSNP
rs1437978459 423 dbSNP
rs970311147 427 dbSNP
rs1344590951 429 dbSNP
rs1024311789 432 dbSNP
rs1447468712 441 dbSNP
rs1339224057 464 dbSNP
rs969797106 477 dbSNP
rs915665085 481 dbSNP
rs191861240 483 dbSNP
rs185755478 484 dbSNP
rs950841083 488 dbSNP
rs1427353930 489 dbSNP
rs1026262636 492 dbSNP
rs561690924 499 dbSNP
rs3733442 508 dbSNP
rs1225698910 509 dbSNP
rs899397089 520 dbSNP
rs955489639 533 dbSNP
rs1189472785 538 dbSNP
rs1018291104 539 dbSNP
rs573210076 540 dbSNP
rs1277638229 541 dbSNP
rs535331145 542 dbSNP
rs1485975256 548 dbSNP
rs1259538666 551 dbSNP
rs867759471 552 dbSNP
rs1007696793 553 dbSNP
rs1192232976 559 dbSNP
rs770052565 566 dbSNP
rs1373391285 570 dbSNP
rs1274064147 571 dbSNP
rs746069406 572 dbSNP
rs1170692596 573 dbSNP
rs1373769366 574 dbSNP
rs1434176139 589 dbSNP
rs747399750 595 dbSNP
rs549476467 598 dbSNP
rs1380988267 604 dbSNP
rs771313426 609 dbSNP
rs891580885 610 dbSNP
rs1436675636 622 dbSNP
rs1006292527 623 dbSNP
rs1286055152 624 dbSNP
rs374485667 638 dbSNP
rs1052753043 639 dbSNP
rs1350419217 662 dbSNP
rs143340242 679 dbSNP
rs929547561 686 dbSNP
rs1484870163 691 dbSNP
rs925866099 692 dbSNP
rs1045856798 697 dbSNP
rs778013612 698 dbSNP
rs1404420469 710 dbSNP
rs1393503100 711 dbSNP
rs1453942714 717 dbSNP
rs916114854 717 dbSNP
rs1379417900 718 dbSNP
rs948543512 733 dbSNP
rs1288785927 736 dbSNP
rs1410935938 738 dbSNP
rs989885488 739 dbSNP
rs1166470834 742 dbSNP
rs1324236846 746 dbSNP
rs1369819285 751 dbSNP
rs545726892 754 dbSNP
rs1314590258 775 dbSNP
rs992653107 782 dbSNP
rs575399885 786 dbSNP
rs1352663934 789 dbSNP
rs557134850 790 dbSNP
rs977504939 791 dbSNP
rs535959274 792 dbSNP
rs1029991275 807 dbSNP
rs139380852 808 dbSNP
rs1233649262 812 dbSNP
rs1269635987 819 dbSNP
rs1417401111 820 dbSNP
rs778049565 832 dbSNP
rs963722120 837 dbSNP
rs13130 839 dbSNP
rs1801919 848 dbSNP
rs963834668 855 dbSNP
rs1163265903 857 dbSNP
rs182580066 859 dbSNP
rs1441240602 863 dbSNP
rs1292039358 864 dbSNP
rs1294909786 865 dbSNP
rs1370625799 866 dbSNP
rs954977335 870 dbSNP
rs1030492994 875 dbSNP
rs202184227 877 dbSNP
rs569767983 880 dbSNP
rs1231335056 881 dbSNP
rs891530103 883 dbSNP
rs1053294931 894 dbSNP
rs1335224539 896 dbSNP
rs1214629376 899 dbSNP
rs993905400 902 dbSNP
rs907238318 917 dbSNP
rs1176713133 918 dbSNP
rs999832470 928 dbSNP
rs779133639 929 dbSNP
rs894628956 932 dbSNP
rs1417665770 938 dbSNP
rs1462289384 939 dbSNP
rs1274665682 941 dbSNP
rs1435223681 951 dbSNP
rs1461124846 963 dbSNP
rs1298280798 964 dbSNP
rs1371848162 965 dbSNP
rs1347770141 967 dbSNP
rs1044105631 969 dbSNP
rs1292599804 980 dbSNP
rs74399176 988 dbSNP
rs190237653 989 dbSNP
rs397969529 989 dbSNP
rs1387777950 990 dbSNP
rs1056872087 996 dbSNP
rs1306016512 997 dbSNP
rs3832295 997 dbSNP
rs1408398981 998 dbSNP
rs929159437 999 dbSNP
rs1059125 1000 dbSNP
rs1257437754 1003 dbSNP
rs919314473 1022 dbSNP
rs977238726 1023 dbSNP
rs1417759687 1030 dbSNP
rs933645055 1030 dbSNP
rs1477132116 1031 dbSNP
rs922323112 1043 dbSNP
rs973903813 1046 dbSNP
rs1391555448 1050 dbSNP
rs753909986 1051 dbSNP
rs780023862 1053 dbSNP
rs963370400 1060 dbSNP
rs975719420 1062 dbSNP
rs1311686302 1065 dbSNP
rs537199158 1070 dbSNP
rs570248500 1071 dbSNP
rs1450080132 1078 dbSNP
rs1286944442 1079 dbSNP
rs986178470 1082 dbSNP
rs1255199064 1084 dbSNP
rs1214263700 1086 dbSNP
rs550377694 1086 dbSNP
rs1298599141 1089 dbSNP
rs1344504609 1090 dbSNP
rs756072959 1092 dbSNP
rs1232198354 1097 dbSNP
rs1464536808 1097 dbSNP
rs1266338922 1105 dbSNP
rs1443525459 1105 dbSNP
rs1211081138 1108 dbSNP
rs1212818189 1109 dbSNP
rs1240765610 1110 dbSNP
rs1318050328 1112 dbSNP
rs1030607562 1113 dbSNP
rs1189542392 1116 dbSNP
rs1391649572 1122 dbSNP
rs1452132553 1133 dbSNP
rs1172511354 1134 dbSNP
rs1395131612 1139 dbSNP
rs533262968 1143 dbSNP
rs1278288403 1145 dbSNP
rs1217894030 1149 dbSNP
rs1156820630 1153 dbSNP
rs1009712887 1162 dbSNP
rs1431206457 1164 dbSNP
rs1367645044 1170 dbSNP
rs753376190 1171 dbSNP
rs1365049058 1172 dbSNP
rs1345776948 1176 dbSNP
rs1305230926 1185 dbSNP
rs1282778257 1186 dbSNP
rs956868968 1194 dbSNP
rs1209776597 1202 dbSNP
rs529029175 1207 dbSNP
rs367818801 1212 dbSNP
rs1801918 1214 dbSNP
rs865814695 1217 dbSNP
rs185375604 1220 dbSNP
rs878972118 1221 dbSNP
rs1044439087 1224 dbSNP
rs755775136 1226 dbSNP
rs1175082401 1237 dbSNP
rs1174903820 1243 dbSNP
rs1407180533 1246 dbSNP
rs1412582810 1257 dbSNP
rs1012558482 1258 dbSNP
rs1460115335 1261 dbSNP
rs1325455145 1262 dbSNP
rs114040561 1270 dbSNP
rs564179878 1271 dbSNP
rs1277805421 1278 dbSNP
rs1246196540 1281 dbSNP
rs929107105 1282 dbSNP
rs919093378 1283 dbSNP
rs1037578578 1290 dbSNP
rs1270475174 1292 dbSNP
rs767279364 1294 dbSNP
rs936152184 1296 dbSNP
rs1290152714 1310 dbSNP
rs942097634 1311 dbSNP
rs374420401 1316 dbSNP
rs910662550 1317 dbSNP
rs751496901 1321 dbSNP
rs1208423900 1322 dbSNP
rs986514412 1324 dbSNP
rs1281522921 1325 dbSNP
rs1474762347 1327 dbSNP
rs933323017 1335 dbSNP
rs146900018 1342 dbSNP
rs575310418 1343 dbSNP
rs759652623 1344 dbSNP
rs1411039063 1365 dbSNP
rs1362529401 1381 dbSNP
rs1290753607 1383 dbSNP
rs1354038452 1384 dbSNP
rs1233071275 1393 dbSNP
rs149149203 1398 dbSNP
rs1358064442 1399 dbSNP
rs371219567 1402 dbSNP
rs544413810 1406 dbSNP
rs909802751 1413 dbSNP
rs1377006337 1414 dbSNP
rs1483087928 1417 dbSNP
rs968852736 1418 dbSNP
rs72663466 1421 dbSNP
rs552937215 1422 dbSNP
rs1025503073 1431 dbSNP
rs1473926185 1433 dbSNP
rs972538688 1435 dbSNP
rs1389704664 1445 dbSNP
rs971523283 1447 dbSNP
rs753799167 1452 dbSNP
rs1309864674 1456 dbSNP
rs1374194892 1463 dbSNP
rs1414662001 1465 dbSNP
rs751227822 1465 dbSNP
rs1024698392 1474 dbSNP
rs895494373 1476 dbSNP
rs1342608774 1477 dbSNP
rs1429283584 1478 dbSNP
rs1035530547 1481 dbSNP
rs1269222679 1489 dbSNP
rs1342367010 1490 dbSNP
rs993372289 1494 dbSNP
rs181021098 1496 dbSNP
rs115592094 1497 dbSNP
rs573736525 1500 dbSNP
rs1200941760 1512 dbSNP
rs1258078245 1512 dbSNP
rs1429239140 1514 dbSNP
rs377494414 1516 dbSNP
rs189138921 1517 dbSNP
rs941892962 1527 dbSNP
rs889171657 1530 dbSNP
rs1170598338 1537 dbSNP
rs1050510366 1539 dbSNP
rs1000479840 1548 dbSNP
rs771221937 1558 dbSNP
rs1486960176 1559 dbSNP
rs1258581016 1567 dbSNP
rs138116430 1571 dbSNP
rs1404883654 1574 dbSNP
rs1482518803 1574 dbSNP
rs1320253144 1576 dbSNP
rs561471908 1577 dbSNP
rs773623810 1584 dbSNP
rs988176287 1586 dbSNP
rs1436794737 1588 dbSNP
rs1300689495 1596 dbSNP
rs935553789 1600 dbSNP
rs1041910167 1602 dbSNP
rs925580383 1603 dbSNP
rs1233966066 1607 dbSNP
rs537772421 1608 dbSNP
rs1348380363 1616 dbSNP
rs1268483090 1631 dbSNP
rs760476965 1631 dbSNP
rs979982633 1632 dbSNP
rs1228941388 1633 dbSNP
rs1307513603 1634 dbSNP
rs1251278194 1635 dbSNP
rs969595310 1645 dbSNP
rs115159507 1646 dbSNP
rs1226469648 1648 dbSNP
rs555181229 1648 dbSNP
rs551390111 1651 dbSNP
rs1452216618 1665 dbSNP
rs991201395 1667 dbSNP
rs959820001 1673 dbSNP
rs1158947620 1677 dbSNP
rs1357302208 1695 dbSNP
rs1458542187 1701 dbSNP
rs75858305 1701 dbSNP
rs993147523 1703 dbSNP
rs2602120 1704 dbSNP
rs1048284400 1714 dbSNP
rs1333940096 1717 dbSNP
rs929932191 1732 dbSNP
rs918390853 1735 dbSNP
rs187431686 1739 dbSNP
rs1210889321 1741 dbSNP
rs1368914981 1744 dbSNP
rs1016195933 1759 dbSNP
rs1300166033 1762 dbSNP
rs971853850 1763 dbSNP
rs1210546280 1765 dbSNP
rs1006433040 1767 dbSNP
rs888959934 1773 dbSNP
rs1269524387 1775 dbSNP
rs1462709693 1776 dbSNP
rs917341219 1780 dbSNP
rs1349333861 1782 dbSNP
rs1413250554 1782 dbSNP
rs1050292232 1785 dbSNP
rs991606628 1787 dbSNP
rs1348962539 1797 dbSNP
rs1458057721 1807 dbSNP
rs958682915 1812 dbSNP
rs1393660337 1817 dbSNP
rs1162780356 1820 dbSNP
rs933386575 1828 dbSNP
rs901955170 1839 dbSNP
rs1231240005 1843 dbSNP
rs1419286723 1853 dbSNP
rs1052415806 1857 dbSNP
rs1245767211 1858 dbSNP
rs1471841049 1864 dbSNP
rs1479698623 1873 dbSNP
rs1491165712 1882 dbSNP
rs202105612 1882 dbSNP
rs935361905 1882 dbSNP
rs3067631 1883 dbSNP
rs75415222 1884 dbSNP
rs1484296132 1885 dbSNP
rs4210 1886 dbSNP
rs869205212 1886 dbSNP
rs1413482919 1889 dbSNP
rs570442099 1891 dbSNP
rs1020840242 1892 dbSNP
rs1370908528 1892 dbSNP
rs1491471065 1893 dbSNP
rs925496534 1898 dbSNP
rs1043991184 1905 dbSNP
rs1264287779 1906 dbSNP
rs552158797 1911 dbSNP
rs557340270 1911 dbSNP
rs1396897205 1912 dbSNP
rs948180950 1917 dbSNP
rs774643000 1922 dbSNP
rs1227796738 1936 dbSNP
rs1275390854 1938 dbSNP
rs916750768 1942 dbSNP
rs1344985142 1944 dbSNP
rs779352056 1944 dbSNP
rs1208607534 1945 dbSNP
rs1293876504 1947 dbSNP
rs1483780749 1949 dbSNP
rs1183894887 1952 dbSNP
rs1259249095 1957 dbSNP
rs530862508 1960 dbSNP
rs1227531501 1969 dbSNP
rs1039419354 1974 dbSNP
rs1391460685 1984 dbSNP
rs992319827 1992 dbSNP
rs1006622543 1993 dbSNP
rs769173472 1995 dbSNP
rs1308920628 1996 dbSNP
rs1204935446 2002 dbSNP
rs748736524 2011 dbSNP
rs1449974522 2012 dbSNP
rs971676461 2012 dbSNP
rs1390311823 2014 dbSNP
rs1434606069 2030 dbSNP
rs888094261 2030 dbSNP
rs1298481312 2032 dbSNP
rs1367421316 2036 dbSNP
rs1048066976 2042 dbSNP
rs752196019 2045 dbSNP
rs763386420 2047 dbSNP
rs1272101148 2057 dbSNP
rs375236629 2057 dbSNP
rs57157914 2057 dbSNP
rs1395825128 2060 dbSNP
rs1464199299 2066 dbSNP
rs1188789984 2076 dbSNP
rs1249422256 2079 dbSNP
rs1452037576 2088 dbSNP
rs918517657 2092 dbSNP
rs1159008146 2099 dbSNP
rs1456139695 2102 dbSNP
rs1365839363 2104 dbSNP
rs11323 2110 dbSNP
rs1419288104 2113 dbSNP
rs1266316249 2122 dbSNP
rs1321459919 2125 dbSNP
rs1391020932 2136 dbSNP
rs541660167 2137 dbSNP
rs1274281120 2138 dbSNP
rs779541998 2140 dbSNP
rs1221415965 2144 dbSNP
rs1286909408 2145 dbSNP
rs1328902724 2150 dbSNP
rs953455107 2152 dbSNP
rs1229934830 2154 dbSNP
rs201689335 2155 dbSNP
rs1273293979 2158 dbSNP
rs916446710 2161 dbSNP
rs201337586 2162 dbSNP
rs397797371 2164 dbSNP
rs58657905 2164 dbSNP
rs1472796274 2166 dbSNP
rs530127451 2170 dbSNP
rs1391137536 2176 dbSNP
rs1403775112 2177 dbSNP
rs1193238213 2178 dbSNP
rs1239578274 2179 dbSNP
rs1350530354 2179 dbSNP
rs997373108 2181 dbSNP
rs978795401 2183 dbSNP
rs901902887 2186 dbSNP
rs1330740732 2191 dbSNP
rs1290557595 2198 dbSNP
rs1052532160 2203 dbSNP
rs190336833 2208 dbSNP
rs999898135 2209 dbSNP
rs1353872335 2212 dbSNP
rs1227359185 2222 dbSNP
rs1301580343 2223 dbSNP
rs1443404009 2227 dbSNP
rs541134670 2229 dbSNP
rs57101865 2231 dbSNP
rs577179887 2231 dbSNP
rs967996468 2232 dbSNP
rs1184114536 2233 dbSNP
rs533872390 2233 dbSNP
rs538206852 2233 dbSNP
rs66508874 2233 dbSNP
rs1044155470 2234 dbSNP
rs140733471 2234 dbSNP
rs1491489269 2234 dbSNP
rs1410945702 2235 dbSNP
rs1310296025 2237 dbSNP
rs948321658 2240 dbSNP
rs916857981 2241 dbSNP
rs1446919117 2242 dbSNP
rs1433452485 2252 dbSNP
rs1357951372 2256 dbSNP
rs1059122 2260 dbSNP
rs1159505598 2268 dbSNP
rs939536718 2276 dbSNP
rs538461993 2277 dbSNP
rs1465889376 2280 dbSNP
rs370500675 2283 dbSNP
rs796387492 2283 dbSNP
rs965503288 2291 dbSNP
rs1455332941 2292 dbSNP
rs1187926003 2297 dbSNP
rs1253009120 2298 dbSNP
rs1018419826 2299 dbSNP
rs1006570261 2305 dbSNP
rs1445199170 2311 dbSNP
rs74629576 2313 dbSNP
rs1431015212 2314 dbSNP
rs971843556 2314 dbSNP
rs1026573640 2317 dbSNP
rs1263855897 2317 dbSNP
rs1335214759 2320 dbSNP
rs377444925 2322 dbSNP
rs576715751 2324 dbSNP
rs1296294329 2326 dbSNP
rs1046299339 2329 dbSNP
rs548007490 2329 dbSNP
rs781015843 2332 dbSNP
rs894958968 2333 dbSNP
rs1200859691 2338 dbSNP
rs1054979664 2341 dbSNP
rs937376574 2344 dbSNP
rs376949935 2345 dbSNP
rs1277956158 2350 dbSNP
rs1247559493 2355 dbSNP
rs1450171019 2371 dbSNP
rs926032293 2372 dbSNP
rs1376450634 2381 dbSNP
rs1236686440 2394 dbSNP
rs979297236 2395 dbSNP
rs1348881118 2398 dbSNP
rs946058690 2400 dbSNP
rs1408728108 2401 dbSNP
rs1455368019 2402 dbSNP
rs1296947926 2404 dbSNP
rs953301367 2405 dbSNP
rs1328676405 2406 dbSNP
rs1319610574 2407 dbSNP
rs1395981668 2408 dbSNP
rs1373984698 2415 dbSNP
rs913250680 2416 dbSNP
rs555198100 2420 dbSNP
rs1207804656 2421 dbSNP
rs1315188913 2421 dbSNP
rs1436135778 2424 dbSNP
rs1267753376 2434 dbSNP
rs1395369141 2434 dbSNP
rs1465472255 2444 dbSNP
rs997318851 2449 dbSNP
rs1474165885 2452 dbSNP
rs184410907 2454 dbSNP
rs1374706927 2458 dbSNP
rs1193754358 2459 dbSNP
rs879579629 2463 dbSNP
rs1432000776 2470 dbSNP
rs566287256 2472 dbSNP
rs1255062492 2475 dbSNP
rs1212824510 2486 dbSNP
rs553071071 2486 dbSNP
rs1454997662 2488 dbSNP
rs534736882 2489 dbSNP
rs1389375540 2490 dbSNP
rs1486117541 2505 dbSNP
rs1274240662 2508 dbSNP
rs1031051960 2516 dbSNP
rs1341501427 2520 dbSNP
rs1227576244 2523 dbSNP
rs1288701889 2525 dbSNP
rs1317787119 2525 dbSNP
rs1241425832 2526 dbSNP
rs1263816717 2529 dbSNP
rs1270878468 2532 dbSNP
rs1244617358 2533 dbSNP
rs1354132566 2534 dbSNP
rs752584908 2536 dbSNP
rs1181960962 2537 dbSNP
rs999613873 2538 dbSNP
rs1252966449 2540 dbSNP
rs767419469 2544 dbSNP
rs1162257332 2548 dbSNP
rs1295488718 2549 dbSNP
rs1164878327 2550 dbSNP
rs1415857334 2550 dbSNP
rs1368661592 2553 dbSNP
rs34123244 2553 dbSNP
rs72119891 2553 dbSNP
rs749373624 2553 dbSNP
rs200852518 2554 dbSNP
rs570330382 2556 dbSNP
rs1327831449 2557 dbSNP
rs1375241049 2557 dbSNP
rs1393424412 2558 dbSNP
rs1310865006 2561 dbSNP
rs748548826 2562 dbSNP
rs903968569 2567 dbSNP
rs1397922381 2568 dbSNP
rs1168003767 2570 dbSNP
rs1246847014 2570 dbSNP
rs1043718608 2571 dbSNP
rs1253077154 2571 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agguaguccucagUACCUUCGa 5'
                       |||||||| 
Target 5' -----------agAUGGAAGCu 3'
1 - 11
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000395002.2 | 3UTR | AGAUGGAAGCUGCAUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BRCA 0.275 0.19 0.217 0.25 12 Click to see details
BLCA 0.474 0.34 0.500 0.33 3 Click to see details
HNSC 0.157 0.38 0.371 0.23 6 Click to see details
LUSC 0.036 0.47 0.143 0.37 8 Click to see details
LUSC 0.036 0.47 0.143 0.37 8 Click to see details
LUSC 0.036 0.47 0.143 0.37 8 Click to see details
LUSC 0.036 0.47 0.143 0.37 8 Click to see details
84 hsa-miR-2115-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT155281 IFNAR2 interferon alpha and beta receptor subunit 2 2 6
MIRT257301 MYLIP myosin regulatory light chain interacting protein 2 8
MIRT441907 SEPN1 selenoprotein N 2 2
MIRT442300 ZNF496 zinc finger protein 496 2 2
MIRT468235 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT469331 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT470203 PSAT1 phosphoserine aminotransferase 1 2 6
MIRT475945 GXYLT1 glucoside xylosyltransferase 1 2 4
MIRT481449 ARRB2 arrestin beta 2 2 2
MIRT497440 SLC16A10 solute carrier family 16 member 10 2 2
MIRT498270 KIAA1644 KIAA1644 2 2
MIRT499225 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT501742 NSD1 nuclear receptor binding SET domain protein 1 2 2
MIRT501762 NRF1 nuclear respiratory factor 1 2 6
MIRT527902 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT528559 DNAAF3 dynein axonemal assembly factor 3 2 2
MIRT531252 PDF peptide deformylase, mitochondrial 2 2
MIRT539490 ACTN4 actinin alpha 4 2 2
MIRT550683 YARS tyrosyl-tRNA synthetase 2 2
MIRT573441 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT616740 DCTN5 dynactin subunit 5 2 2
MIRT617626 RAB3IP RAB3A interacting protein 2 2
MIRT620780 MT1A metallothionein 1A 2 2
MIRT623174 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT624880 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT625799 MDC1 mediator of DNA damage checkpoint 1 2 2
MIRT629790 CHRFAM7A CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion 2 2
MIRT630535 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT630762 ZNF445 zinc finger protein 445 2 2
MIRT630921 UNC93A unc-93 homolog A 2 2
MIRT630949 PANK1 pantothenate kinase 1 2 2
MIRT631688 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT633898 FGF10 fibroblast growth factor 10 2 2
MIRT635935 PLA2G12A phospholipase A2 group XIIA 2 2
MIRT636177 THBD thrombomodulin 2 2
MIRT636730 AFAP1 actin filament associated protein 1 2 2
MIRT638038 SHPK sedoheptulokinase 2 2
MIRT639164 LAMTOR3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 2 2
MIRT639260 MANEAL mannosidase endo-alpha like 2 2
MIRT639327 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT639849 YY1 YY1 transcription factor 2 2
MIRT641474 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT642783 CHCHD3 coiled-coil-helix-coiled-coil-helix domain containing 3 2 2
MIRT643653 MYOCD myocardin 2 2
MIRT645717 PTPRF protein tyrosine phosphatase, receptor type F 2 2
MIRT648018 SLCO4C1 solute carrier organic anion transporter family member 4C1 2 2
MIRT648236 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT648563 MEMO1 mediator of cell motility 1 2 2
MIRT648731 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT650179 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT650721 TNFSF8 TNF superfamily member 8 2 2
MIRT652179 TRIM44 tripartite motif containing 44 2 2
MIRT654272 RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase 2 2
MIRT654493 RAD51L3-RFFL RAD51L3-RFFL readthrough 2 2
MIRT654861 PPM1F protein phosphatase, Mg2+/Mn2+ dependent 1F 2 2
MIRT656392 MCU mitochondrial calcium uniporter 2 2
MIRT656623 LRRC15 leucine rich repeat containing 15 2 2
MIRT657085 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT659793 CBLB Cbl proto-oncogene B 2 2
MIRT660155 BRCC3 BRCA1/BRCA2-containing complex subunit 3 2 2
MIRT662444 SERPINB5 serpin family B member 5 2 2
MIRT663116 SPTA1 spectrin alpha, erythrocytic 1 2 2
MIRT665759 TMEM43 transmembrane protein 43 2 2
MIRT666357 SIKE1 suppressor of IKBKE 1 2 2
MIRT668521 ESRRG estrogen related receptor gamma 2 2
MIRT677776 FKTN fukutin 2 2
MIRT678900 TTLL12 tubulin tyrosine ligase like 12 2 2
MIRT702825 HOOK3 hook microtubule tethering protein 3 2 2
MIRT704424 CTNNBIP1 catenin beta interacting protein 1 2 2
MIRT709470 KRTAP19-1 keratin associated protein 19-1 2 2
MIRT710939 MRPL45 mitochondrial ribosomal protein L45 2 2
MIRT713306 TYRP1 tyrosinase related protein 1 2 2
MIRT716932 FAM13A family with sequence similarity 13 member A 2 2
MIRT717539 PYGO2 pygopus family PHD finger 2 2 2
MIRT718060 CYP3A5 cytochrome P450 family 3 subfamily A member 5 2 2
MIRT718934 TRIM66 tripartite motif containing 66 2 2
MIRT719770 ZNF236 zinc finger protein 236 2 2
MIRT720164 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT721280 RAD54L2 RAD54 like 2 2 2
MIRT721359 ENTHD1 ENTH domain containing 1 2 2
MIRT721506 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT721920 LINGO2 leucine rich repeat and Ig domain containing 2 2 2
MIRT722791 FUT4 fucosyltransferase 4 2 2
MIRT723933 SVOP SV2 related protein 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-2115 Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-mir-2115 Decitabine 451668 approved sensitive tissue (esopheageal cancer)
hsa-miR-2115-5p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-2115-5p Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)
hsa-miR-2115-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-2115-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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