pre-miRNA Information
pre-miRNA hsa-mir-6839   
Genomic Coordinates chr7: 64679064 - 64679176
Description Homo sapiens miR-6839 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6839-3p
Sequence 92| UUGGGUUUUCUCUUCAAUCCAG |113
Evidence Experimental
Experiments Meta-analysis
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN15661209 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1426245091 3 dbSNP
rs533324498 6 dbSNP
rs1169594864 16 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GPR155   
Synonyms DEP.7, DEPDC3, PGR22
Description G protein-coupled receptor 155
Transcript NM_001033045   
Other Transcripts NM_152529   
Expression
Putative miRNA Targets on GPR155
3'UTR of GPR155
(miRNA target sites are highlighted)
>GPR155|NM_001033045|3'UTR
   1 ATTATGCAGGGGAGAACCCTACATGGAATCATATTCTAGCCGCGTATTCATTAGTTTTTAGCTGGGTGACCTTGGGCAAG
  81 TTAACAGAGGCAACCTCTCTGAGCCTCAGTTGTCTCTTCTGTAAAATGTGAAAAGATGTGCTCCCACCACATGCGCAGGG
 161 TCTGTGATTTTACATGTATGTAAAACACATAGGAAGCTGACTTAGGAAAAAGAGAAAACCAAATTAAAGTTCTGATAATG
 241 AATATAATATAGTCATCCTTTAGTATCCAAGGGGATTGGTTCCAGGACTCCTGAAGATCCCAAAATCTGAGGATACTCAA
 321 GTCCCTTATATAAAATGGTGTAGGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGTACTTTGGGAGGCCGAGTCAGGTG
 401 GATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGCGAAACCCCGTCTCTACTATAAAATACAAAAAATTA
 481 GTTGGGTGTGGTGGCGGGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAATCTGGGAGGCAG
 561 AGGTTGCTGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGAGCAACAGAGCAAGACTCTATCTCAAAAATAAAATAAA
 641 ATAAAATAAAATAATTAATAAAATGGTGTAGTATTTGCATATAACCTATGCACATTCTCCCATATAGTTTAATCATCTTT
 721 AGATACTTATAATGCCTAATACAATGTAAATGCTATGTAAATAGTTGTTGTTATACTGTATTGTTTAGGGAATAACAATA
 801 AGAAAAACAGTCTGTACATGTTCACTACAGATGCAACCATTGTTAAGCCTGACTACATCTTTTTATCTGCGGTTGATTGA
 881 ATCTATGGATGTGGAACCTGTGCATATGGAGGGTCAACTGTACTATAAATAATACGAATATGCCAACATTATATAATCAT
 961 TGCTTTCTGCAACTGTTTACTATAATTTCAAAATTAATATCCTATTAACTGTTCCTATAAATTATCAAATTTGGCAAGTG
1041 TATTACTAGCAGGAGATGGACCTTAAATTATGACAACTTTATATTTTTTGATAGCATCTCTTGAAAAAGAATTTTAATGA
1121 TTCTAATAAGAGGTTCTTTTTCTTTTTTCCATTTCCTTGACAAATAGTACTCATTTAAAAACTAGAGGGCTAGGCTTAGT
1201 GGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCTGAGGCGGGCAGATCGCTTGAGGTCAGGAGTTCAAGACCAGCCCGG
1281 GCAACGTGGTGAAACCCGGTCTGTACTAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAAAGAATACCCAGGTGTGGTAG
1361 TGCATGCCTGTAGTCCCAGCTACTTTGGAGACTGAGGTGGGAGTACCCCTTGAGCCTGGGAGGCGCAGGTTGCAGTGAAC
1441 CAAGATCACATCACTGCACTTCAACCTGGGTGACAGAGCAAGACCCTGTCTCAAAAACAAAAAACAAGCAAAAAAAACCT
1521 AGAGGCACTATTTTTTTTTAAAGTTTGTCTTTTCTTTTCTACCCAAATTACTAATCTATGCCATTAAGGAAAGGAATAAG
1601 AACCTCCATATGTATTATTATCTCCACAGTCCTGCAGAAGTACAATCTGATCTTTAACTTTCATGCTACAAATAATAATT
1681 TGAGTAGATTAATTTGAATTTTATCAACAAAATTATTGCCATATGATGTATCATTTCTGTGTTTGAACAAAGCATCGTAA
1761 TGCAGGATAACTTCTACTTTATTCCCTGTAGTTAAAAAAAAAAAAACTATATAGTTCAAGCCAATATTTAAAAATTCTAA
1841 ACCTAGGCTGGGCATGGTGACTCATACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGAATTGCTTCAGCCCAGG
1921 AGTTCGAGACCAGCCTGGCCAATGTGGTGAAACCCCATCTCTACTAAAAAAAAAAAAAAAAAAAAAAATTAGCCAGGTGT
2001 GGTGGTGTGCACCTGTAATCCCAGCTACCCAGGAGGCTGAGGCAGGAAAATTGCTTGAAACCAGGAGGCAGAGGTTGCAG
2081 TGAGCTGAGATCGTGCCACTGCACTCCAGCCTGAGTGTCAGAGTGAGACTCTGTCTCAGAAAAAAAAAAAAAAATTCTAA
2161 AGATTACATTTAGAATTTAGTCTTTTTAAAGTGTCCATGTATAAAAATATATAATTTTTAAAATTACTAAATGTTGCCTT
2241 TTCTCTTAGTCTAATATTTTAGCTACTAAAACAAAATATAAACTGGATAGCTTATAAACAACATAAACTTATTTCTCACA
2321 GTTTTGGAGGCTGTGAAGTCCAAGATTAAGGCACTAACAGATCTAGTGTCTGGTAAGGCAAATTTCTGGCTCATAGATGG
2401 TACCTTCTTGCTGTGTCCCCACATGGTAGATGGGAAGAACTGGTCTCATTGGCCCCTTATAAGGACATTAATTCCACTCA
2481 ATAGGCTCCACCCTCATGATCTAATAACCTCTCAAAGGCCCTACCTCCTAATACTAACACATTGAGGATGTGACTTCAAC
2561 TTTACATTTCTACAGGCAGAGAAGTGGGGCTGTGTAAATTCTTCCCATCAGTACTTGAATGTTCATTTAACAAATAACTT
2641 ATCGAGCATCTAGCATGTTCCAGACACAATCTGAACACTGAGCACACAACAGTTGGAACAAATATGATTCCTATCCTCAT
2721 GGAGCTTCTATTCTCCTGTGAAAAACAGATGTTAAACATGATTGAGGATTAGGTTTCAACATAAGAATTCTAGGAGGACA
2801 CAGACATTTAGACCATAGCATCTTCAGGTAAACTTTATCTTCAGTAAATTAAAGAGATCTATTTAGATGACCTTTGAGCA
2881 TCTTAATTATTAGATGTCAGTGCTAGTTTAACTTATTTTAAACGTTTCAGATATTTATTTAATTATACTTTAAGTGTCTC
2961 ATGTAAAAAAGTTATTTATAAAATAATTTATAGGGTTAGAGTCATTGCCCTTTTAATGCAACAAATAAACAGTTTTTTAA
3041 AAACCTGCATGGGGGCCAGGCGCGGTGGTTCATACCTGCAATCCCAGCACTTTGGGAGGTCGAGGCTGGCGGATCACGAG
3121 GTCAGGAGATCGAGACCACCCTGATTAATGCGGTGAAATCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGACGTGGT
3201 GGTGGGCACCTATAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGAAGGCGGAGCTTGCAGTGA
3281 ACCAAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCATCGCAAAAAAAAAAAAAAAAAAACCTGCAT
3361 GGAAGCCTAGTATATTTATTAATAACAAATAAATTATACTTTAGTGTACTATTAACCTATACCAATTTTAAGTTGTGATT
3441 AGGGAATGGGGATGTTTTTAAGCTGAATTGTCTTGCTGCGGAACTTTCCTTTTTTAATAAGACCATATTATGACTCTGAA
3521 TGCTCAAGGGTAAGTCTAAGGCCTCATTGCTGTTACCAGGAGATTTTTCTAGTTACAGTAATAAAGATGTTAATTCACAT
3601 GCATGCAGACAACTGAAACTCAAGTGGAGAATTTGTTTGTGAACAAGTCATACTACTTCTGTTATTTGCATGAATGGAAT
3681 CTGCAATATCTTTTTCCATGGGAGACCCTAAAAGAAAACCCTGGATCAGAATGATCTGCAGTTTCAGATAATAAAGGCTT
3761 TTAAGAGACATTTTTAGAATTAAAAATATGCTAATTTTATTAAATGAAAATATTTGTAACTGTTAACTTTCTCACTGACA
3841 AAGCAAGTTTCTCAATAAAATACCTATTTTAACTTGCATTACTGACATCTTTTCTTTGAGTAATCTGAATAATGCAGAAG
3921 CCATCATAGAGGTCTTTTCTATACATTCTCAATGTTTTCTTAAATGGGTTTCCTGAGTTCTGTTCTTCATGACTCTGGGC
4001 TCTGCAAACAGGGTTTCCCAATTACGCATTCTATAAACACTTTTATGAATGAGTCAATATGACATTGAGTCCTTTTCATA
4081 CATTTCATCATTTCCAATATGTAGAGTGACAGCTAGAAAAATGATAAAATTTTGATTAAAACCTATCTCTTTTTCTTCAG
4161 CATAGTCAATTGTTTTCTTAACTCTCAATGAGTAACTCCATGCCTAGCTTGTGCTTAGCTTTCAATATTTTTAGACTAAG
4241 ACAAAGTGTATTTGGCATTTTGAGAACAACAATTAATGGTCAGTAAATTTCTAAAGCAAGAAAAATGTGAAACTAGTGTT
4321 TTATATGTTTGTTACGCAGCAGAATGCGGCTCTTAGTGTTTGCCCCTTCATATCTCATCATGTAAAATATTAAATTACTT
4401 TAGGCCACTGCACATAGGTAGTCCTGTCATGAGTGATGGCTGGAGAAAAGTTCAGGATCATAAATGTTATCATCATTCTT
4481 CAAGAAAAGATGAGATTATAAATTTCTGCAATTGGTATGATAAAAGGTTGAAATAATTAATGAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaccuaacUUCUCUUUUGGGuu 5'
                  || |||||||||  
Target 5' gagaccctAAAAGAAAACCCtg 3'
3702 - 3723 142.00 -11.20
2
miRNA  3' gaCCUAACUUCUCUUUUGGGUu 5'
            |||   ||||||||||| | 
Target 5' taGGA-AAAAGAGAAAACCAAa 3'
203 - 223 139.00 -16.92
3
miRNA  3' gaccuaaCUUCUCUUUUGGGUu 5'
                 | | | ||||||:| 
Target 5' aaaacaaGCAAAAAAAACCTAg 3'
1501 - 1522 135.00 -7.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30168976 12 COSMIC
COSN30103019 18 COSMIC
COSN30109615 44 COSMIC
COSN30142047 49 COSMIC
COSN30108695 99 COSMIC
COSN30535932 154 COSMIC
COSN22884856 162 COSMIC
COSN23541204 528 COSMIC
COSN23541203 531 COSMIC
COSN7147293 547 COSMIC
COSN24371531 1031 COSMIC
COSN4910295 1218 COSMIC
COSN31961746 1387 COSMIC
COSN27392593 1793 COSMIC
COSN27235305 1794 COSMIC
COSN1229012 2038 COSMIC
COSN27302105 2139 COSMIC
COSN1807404 2309 COSMIC
COSN17763853 3314 COSMIC
COSN29964305 3334 COSMIC
COSN24910478 3480 COSMIC
COSN6155086 4092 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1478233070 5 dbSNP
rs1187642919 9 dbSNP
rs765404739 10 dbSNP
rs374135134 11 dbSNP
rs202020371 12 dbSNP
rs1379362038 14 dbSNP
rs776934363 17 dbSNP
rs1357282058 29 dbSNP
rs1455128160 34 dbSNP
rs1465214345 38 dbSNP
rs764433905 41 dbSNP
rs370084901 42 dbSNP
rs202129444 43 dbSNP
rs373340538 44 dbSNP
rs762784066 46 dbSNP
rs773196674 47 dbSNP
rs901616460 58 dbSNP
rs1311585851 63 dbSNP
rs1310861395 66 dbSNP
rs1040047256 79 dbSNP
rs558004780 94 dbSNP
rs1393028615 95 dbSNP
rs1206300366 101 dbSNP
rs1373816554 103 dbSNP
rs1307122690 114 dbSNP
rs1407622699 124 dbSNP
rs1254400161 135 dbSNP
rs889035195 137 dbSNP
rs1190313681 145 dbSNP
rs1422596972 150 dbSNP
rs532239302 154 dbSNP
rs935814138 155 dbSNP
rs1411157327 156 dbSNP
rs867050647 159 dbSNP
rs1327832535 160 dbSNP
rs924459481 164 dbSNP
rs564564998 174 dbSNP
rs998316072 190 dbSNP
rs1293182348 191 dbSNP
rs1465079450 200 dbSNP
rs977249117 235 dbSNP
rs181905855 246 dbSNP
rs565888504 250 dbSNP
rs1328895639 252 dbSNP
rs1227164608 254 dbSNP
rs964216946 255 dbSNP
rs1161941276 257 dbSNP
rs1220129419 259 dbSNP
rs569942183 263 dbSNP
rs189649114 279 dbSNP
rs959641195 283 dbSNP
rs1250884797 297 dbSNP
rs1471467885 312 dbSNP
rs1033904409 315 dbSNP
rs554147737 320 dbSNP
rs534907218 321 dbSNP
rs952221629 323 dbSNP
rs1009936440 324 dbSNP
rs1026464520 329 dbSNP
rs993692647 336 dbSNP
rs901585344 339 dbSNP
rs1411973319 340 dbSNP
rs185202630 346 dbSNP
rs549178828 347 dbSNP
rs929460489 353 dbSNP
rs530763329 362 dbSNP
rs888786816 363 dbSNP
rs1054356378 379 dbSNP
rs1056883438 381 dbSNP
rs1343002999 391 dbSNP
rs937140516 400 dbSNP
rs1250580618 401 dbSNP
rs1481961272 404 dbSNP
rs1189752118 431 dbSNP
rs537727441 434 dbSNP
rs1472391988 438 dbSNP
rs1037558145 439 dbSNP
rs1241119894 441 dbSNP
rs1411804301 443 dbSNP
rs903137178 444 dbSNP
rs1317379392 445 dbSNP
rs551159334 446 dbSNP
rs1428261663 451 dbSNP
rs949929103 453 dbSNP
rs917963651 454 dbSNP
rs992212149 458 dbSNP
rs983185938 459 dbSNP
rs1366795646 460 dbSNP
rs1357015039 462 dbSNP
rs1273503758 467 dbSNP
rs938000110 468 dbSNP
rs1201974097 478 dbSNP
rs533047462 478 dbSNP
rs1279135552 480 dbSNP
rs1441630060 488 dbSNP
rs377233231 491 dbSNP
rs192974959 495 dbSNP
rs1451435980 496 dbSNP
rs549661865 501 dbSNP
rs984831046 504 dbSNP
rs952380048 509 dbSNP
rs1454823535 510 dbSNP
rs1174525344 511 dbSNP
rs919540463 517 dbSNP
rs1414237645 520 dbSNP
rs1332792496 525 dbSNP
rs547408103 541 dbSNP
rs1296153545 556 dbSNP
rs1157467151 560 dbSNP
rs1362382796 561 dbSNP
rs976847910 573 dbSNP
rs529539183 575 dbSNP
rs1418981050 576 dbSNP
rs1465242708 578 dbSNP
rs1247557053 581 dbSNP
rs1018670323 582 dbSNP
rs964186321 587 dbSNP
rs1007733861 588 dbSNP
rs1477921293 590 dbSNP
rs1440854058 592 dbSNP
rs562071649 597 dbSNP
rs1205791479 600 dbSNP
rs1033079552 607 dbSNP
rs1267388870 610 dbSNP
rs1385857810 616 dbSNP
rs1000396655 618 dbSNP
rs1323835384 622 dbSNP
rs999899463 622 dbSNP
rs1206694762 630 dbSNP
rs553395199 641 dbSNP
rs1293616876 642 dbSNP
rs1329592305 646 dbSNP
rs148922759 651 dbSNP
rs1227785485 655 dbSNP
rs1266138442 655 dbSNP
rs59055819 655 dbSNP
rs71024806 655 dbSNP
rs71407115 655 dbSNP
rs1243617364 656 dbSNP
rs1338332010 658 dbSNP
rs1297172284 660 dbSNP
rs60078795 662 dbSNP
rs1459023445 674 dbSNP
rs1382275909 691 dbSNP
rs1163268467 694 dbSNP
rs1388602395 698 dbSNP
rs1020572426 701 dbSNP
rs1010277041 722 dbSNP
rs1309474702 726 dbSNP
rs1350931760 734 dbSNP
rs1408935554 739 dbSNP
rs1286411143 742 dbSNP
rs903106061 745 dbSNP
rs1247101398 756 dbSNP
rs1266169610 761 dbSNP
rs1395693884 770 dbSNP
rs1162971843 773 dbSNP
rs1471973792 778 dbSNP
rs895489884 783 dbSNP
rs1041621938 790 dbSNP
rs1057254746 792 dbSNP
rs1249041125 796 dbSNP
rs918119491 810 dbSNP
rs1448967604 819 dbSNP
rs1246210807 822 dbSNP
rs1188841590 827 dbSNP
rs1001257013 847 dbSNP
rs1422186052 848 dbSNP
rs1014010878 855 dbSNP
rs1370742889 863 dbSNP
rs79631467 865 dbSNP
rs1296177163 870 dbSNP
rs11690262 871 dbSNP
rs1273652696 877 dbSNP
rs938074262 880 dbSNP
rs1353881777 886 dbSNP
rs1252671388 890 dbSNP
rs926754419 893 dbSNP
rs907745399 897 dbSNP
rs1047648675 904 dbSNP
rs1363860202 906 dbSNP
rs929939976 909 dbSNP
rs1250039164 914 dbSNP
rs1049522128 919 dbSNP
rs930701043 930 dbSNP
rs976770921 935 dbSNP
rs919470301 936 dbSNP
rs148541020 939 dbSNP
rs966170639 947 dbSNP
rs912047507 954 dbSNP
rs545937438 957 dbSNP
rs953241203 959 dbSNP
rs1032802209 962 dbSNP
rs1403918322 974 dbSNP
rs1020923636 978 dbSNP
rs1466340075 980 dbSNP
rs1302215663 985 dbSNP
rs1403765046 994 dbSNP
rs1450551596 1011 dbSNP
rs1399029764 1013 dbSNP
rs144744235 1018 dbSNP
rs1366009929 1044 dbSNP
rs1214276450 1069 dbSNP
rs967026709 1073 dbSNP
rs1314362291 1081 dbSNP
rs1234367440 1085 dbSNP
rs1255921195 1090 dbSNP
rs1035300635 1091 dbSNP
rs1211109065 1099 dbSNP
rs1429280398 1109 dbSNP
rs1001185080 1113 dbSNP
rs1184457805 1117 dbSNP
rs553877559 1119 dbSNP
rs1020131160 1139 dbSNP
rs1175008552 1150 dbSNP
rs905617899 1165 dbSNP
rs190303446 1174 dbSNP
rs765715148 1184 dbSNP
rs1014145113 1187 dbSNP
rs895760152 1189 dbSNP
rs573969084 1201 dbSNP
rs1369911325 1203 dbSNP
rs1001407803 1205 dbSNP
rs768223857 1208 dbSNP
rs1321847302 1215 dbSNP
rs149367415 1223 dbSNP
rs537367206 1240 dbSNP
rs569701348 1241 dbSNP
rs1327890095 1242 dbSNP
rs919272063 1248 dbSNP
rs1036591382 1249 dbSNP
rs944928727 1250 dbSNP
rs1048081476 1255 dbSNP
rs912182336 1261 dbSNP
rs1266596591 1278 dbSNP
rs986702767 1279 dbSNP
rs1159887383 1282 dbSNP
rs551559947 1285 dbSNP
rs529893873 1286 dbSNP
rs901784244 1294 dbSNP
rs1235839362 1297 dbSNP
rs138896106 1298 dbSNP
rs1274804736 1299 dbSNP
rs1344074992 1303 dbSNP
rs1434875395 1306 dbSNP
rs1412009793 1308 dbSNP
rs1337912424 1309 dbSNP
rs1041056993 1315 dbSNP
rs1409513574 1316 dbSNP
rs978550211 1317 dbSNP
rs1221590170 1319 dbSNP
rs1291477193 1320 dbSNP
rs1491063787 1321 dbSNP
rs1221338341 1322 dbSNP
rs775644830 1322 dbSNP
rs1468588347 1323 dbSNP
rs35253539 1323 dbSNP
rs368569696 1323 dbSNP
rs60581210 1323 dbSNP
rs758032823 1323 dbSNP
rs764681424 1323 dbSNP
rs796702370 1323 dbSNP
rs797007476 1323 dbSNP
rs1183519670 1324 dbSNP
rs1416099934 1328 dbSNP
rs1034354719 1329 dbSNP
rs1175656484 1329 dbSNP
rs1406003905 1329 dbSNP
rs942719714 1329 dbSNP
rs979770186 1335 dbSNP
rs1435384564 1341 dbSNP
rs1308954633 1342 dbSNP
rs1019890675 1346 dbSNP
rs992480390 1349 dbSNP
rs1440737257 1351 dbSNP
rs1424499190 1352 dbSNP
rs959938598 1357 dbSNP
rs1312508444 1360 dbSNP
rs565812871 1363 dbSNP
rs1365331374 1372 dbSNP
rs1205407044 1374 dbSNP
rs10930665 1386 dbSNP
rs1482559609 1389 dbSNP
rs775634709 1396 dbSNP
rs115748529 1397 dbSNP
rs1028124415 1402 dbSNP
rs1182991724 1404 dbSNP
rs994939282 1406 dbSNP
rs897942058 1408 dbSNP
rs1383631853 1410 dbSNP
rs1451627456 1412 dbSNP
rs1169464496 1423 dbSNP
rs1419304255 1424 dbSNP
rs1036356641 1425 dbSNP
rs944728442 1426 dbSNP
rs890664032 1437 dbSNP
rs1200320812 1439 dbSNP
rs541108841 1457 dbSNP
rs760788185 1461 dbSNP
rs932116023 1464 dbSNP
rs1015937122 1465 dbSNP
rs1228732443 1471 dbSNP
rs370415818 1476 dbSNP
rs1005985933 1486 dbSNP
rs1337227806 1497 dbSNP
rs1280564282 1505 dbSNP
rs1228142983 1508 dbSNP
rs1348907315 1509 dbSNP
rs1315047775 1518 dbSNP
rs886209514 1522 dbSNP
rs1460771767 1526 dbSNP
rs1056035 1528 dbSNP
rs1358669304 1532 dbSNP
rs550033129 1539 dbSNP
rs1038974520 1540 dbSNP
rs901760545 1540 dbSNP
rs942645974 1543 dbSNP
rs889805784 1544 dbSNP
rs945785556 1547 dbSNP
rs913015979 1550 dbSNP
rs1412759089 1554 dbSNP
rs1410055803 1564 dbSNP
rs11537747 1566 dbSNP
rs531892612 1575 dbSNP
rs564517265 1577 dbSNP
rs546424754 1583 dbSNP
rs1469795692 1586 dbSNP
rs1174860497 1588 dbSNP
rs1390262802 1597 dbSNP
rs959734413 1604 dbSNP
rs1435127414 1605 dbSNP
rs1034645845 1606 dbSNP
rs947476520 1617 dbSNP
rs913336090 1622 dbSNP
rs546461470 1646 dbSNP
rs759776814 1649 dbSNP
rs938850748 1672 dbSNP
rs1331349246 1684 dbSNP
rs1205751149 1686 dbSNP
rs1261307945 1688 dbSNP
rs1445549614 1689 dbSNP
rs866304344 1692 dbSNP
rs772933093 1693 dbSNP
rs928856736 1695 dbSNP
rs769581223 1701 dbSNP
rs1207397567 1717 dbSNP
rs1480308146 1719 dbSNP
rs952628916 1732 dbSNP
rs73022139 1741 dbSNP
rs1269286771 1743 dbSNP
rs1414749067 1743 dbSNP
rs184641581 1755 dbSNP
rs1208607333 1756 dbSNP
rs969671420 1757 dbSNP
rs1295428727 1763 dbSNP
rs1323802591 1767 dbSNP
rs994036793 1770 dbSNP
rs191694663 1771 dbSNP
rs748002745 1784 dbSNP
rs1282564116 1791 dbSNP
rs1432933435 1792 dbSNP
rs1346939959 1793 dbSNP
rs1350986514 1799 dbSNP
rs897910820 1804 dbSNP
rs1260263928 1807 dbSNP
rs796936192 1807 dbSNP
rs879874084 1807 dbSNP
rs1292704363 1814 dbSNP
rs1490290532 1825 dbSNP
rs1015018744 1828 dbSNP
rs35768545 1835 dbSNP
rs1008868242 1842 dbSNP
rs890476555 1857 dbSNP
rs1197664004 1864 dbSNP
rs574861044 1867 dbSNP
rs1026520787 1871 dbSNP
rs997322729 1875 dbSNP
rs1361628510 1882 dbSNP
rs1386203243 1884 dbSNP
rs549542973 1893 dbSNP
rs1405665751 1894 dbSNP
rs1364493670 1902 dbSNP
rs1017506161 1906 dbSNP
rs1007502280 1909 dbSNP
rs1370910268 1912 dbSNP
rs1390820081 1914 dbSNP
rs903796570 1918 dbSNP
rs1043050556 1925 dbSNP
rs531137640 1926 dbSNP
rs891876457 1934 dbSNP
rs1358936678 1935 dbSNP
rs11688663 1937 dbSNP
rs1043197040 1938 dbSNP
rs1481161445 1943 dbSNP
rs1195785606 1948 dbSNP
rs545041628 1949 dbSNP
rs1443644833 1954 dbSNP
rs1463887511 1962 dbSNP
rs1275502001 1965 dbSNP
rs1222762195 1966 dbSNP
rs1170093912 1989 dbSNP
rs1377629315 1989 dbSNP
rs1384245227 1989 dbSNP
rs1442444584 1989 dbSNP
rs938822450 1989 dbSNP
rs1337527218 1992 dbSNP
rs1454670732 1992 dbSNP
rs1382087691 1993 dbSNP
rs1244144167 1995 dbSNP
rs928824110 1999 dbSNP
rs946255956 2002 dbSNP
rs1227064070 2008 dbSNP
rs1250157682 2010 dbSNP
rs1484495238 2011 dbSNP
rs912942296 2012 dbSNP
rs1056816149 2013 dbSNP
rs1242067005 2025 dbSNP
rs370335649 2034 dbSNP
rs938319073 2036 dbSNP
rs1190130509 2055 dbSNP
rs774235380 2057 dbSNP
rs1044564540 2063 dbSNP
rs1216512241 2081 dbSNP
rs1366032689 2083 dbSNP
rs926996490 2092 dbSNP
rs372443073 2093 dbSNP
rs1470285879 2097 dbSNP
rs909500004 2099 dbSNP
rs952653413 2108 dbSNP
rs1405512529 2113 dbSNP
rs1450465659 2119 dbSNP
rs1290858416 2123 dbSNP
rs1362940958 2132 dbSNP
rs1362870578 2133 dbSNP
rs1382030804 2134 dbSNP
rs1327718473 2135 dbSNP
rs1317534193 2137 dbSNP
rs1349041280 2138 dbSNP
rs891634716 2139 dbSNP
rs919882332 2140 dbSNP
rs117680606 2143 dbSNP
rs1390267739 2147 dbSNP
rs1260970281 2155 dbSNP
rs1485369426 2155 dbSNP
rs763267619 2155 dbSNP
rs1184375294 2161 dbSNP
rs1269282892 2164 dbSNP
rs1167398131 2168 dbSNP
rs961208753 2169 dbSNP
rs1255405731 2180 dbSNP
rs1161315268 2182 dbSNP
rs1192182501 2182 dbSNP
rs1345837551 2191 dbSNP
rs1014990607 2195 dbSNP
rs1453365902 2199 dbSNP
rs1009005687 2205 dbSNP
rs1347799753 2207 dbSNP
rs746493934 2208 dbSNP
rs12105876 2211 dbSNP
rs1344123096 2219 dbSNP
rs1225953847 2220 dbSNP
rs1307137546 2223 dbSNP
rs1028983188 2227 dbSNP
rs565621981 2228 dbSNP
rs1266786054 2233 dbSNP
rs1245283331 2247 dbSNP
rs1206910867 2248 dbSNP
rs1266707785 2264 dbSNP
rs748419124 2266 dbSNP
rs781068678 2273 dbSNP
rs1177677739 2275 dbSNP
rs1408887523 2277 dbSNP
rs904769073 2282 dbSNP
rs1418523448 2295 dbSNP
rs547054641 2302 dbSNP
rs1157206621 2305 dbSNP
rs1043289573 2306 dbSNP
rs1168854428 2321 dbSNP
rs1302978114 2326 dbSNP
rs1010324235 2330 dbSNP
rs1445076155 2336 dbSNP
rs891976359 2347 dbSNP
rs1280636017 2356 dbSNP
rs1274100764 2358 dbSNP
rs1221506210 2360 dbSNP
rs1022672755 2363 dbSNP
rs1056784067 2388 dbSNP
rs1011542908 2394 dbSNP
rs186496471 2414 dbSNP
rs1289371370 2415 dbSNP
rs138536290 2423 dbSNP
rs1205200303 2428 dbSNP
rs1232169631 2439 dbSNP
rs1044065512 2443 dbSNP
rs1480368294 2446 dbSNP
rs1002894438 2449 dbSNP
rs1387142681 2450 dbSNP
rs907324178 2451 dbSNP
rs563662499 2454 dbSNP
rs1387238824 2468 dbSNP
rs1366649819 2469 dbSNP
rs1044533297 2475 dbSNP
rs930976627 2481 dbSNP
rs1330151082 2482 dbSNP
rs34267708 2486 dbSNP
rs397870967 2486 dbSNP
rs909424944 2488 dbSNP
rs1411338660 2489 dbSNP
rs1370780405 2490 dbSNP
rs1338187361 2496 dbSNP
rs1306913102 2497 dbSNP
rs919807219 2539 dbSNP
rs765545875 2540 dbSNP
rs972658595 2540 dbSNP
rs1341219400 2542 dbSNP
rs961178754 2552 dbSNP
rs1214905615 2569 dbSNP
rs1396307753 2573 dbSNP
rs1272234424 2575 dbSNP
rs1305748034 2577 dbSNP
rs912383524 2579 dbSNP
rs1245116172 2583 dbSNP
rs549407639 2586 dbSNP
rs1183238820 2595 dbSNP
rs1241447192 2607 dbSNP
rs954812014 2608 dbSNP
rs944427162 2609 dbSNP
rs745523724 2614 dbSNP
rs996151659 2616 dbSNP
rs12619175 2621 dbSNP
rs1451201456 2631 dbSNP
rs1334325005 2636 dbSNP
rs1483528780 2643 dbSNP
rs1430988483 2653 dbSNP
rs1021800810 2658 dbSNP
rs1010463079 2661 dbSNP
rs1203225716 2663 dbSNP
rs892069187 2668 dbSNP
rs183791499 2669 dbSNP
rs1203070474 2677 dbSNP
rs1256594432 2677 dbSNP
rs145806211 2687 dbSNP
rs527854188 2688 dbSNP
rs1311518672 2690 dbSNP
rs1449003429 2692 dbSNP
rs1194126480 2699 dbSNP
rs1044546018 2713 dbSNP
rs192408002 2714 dbSNP
rs1477036204 2715 dbSNP
rs930965886 2719 dbSNP
rs1299006901 2720 dbSNP
rs1202239365 2734 dbSNP
rs1430564275 2749 dbSNP
rs1422068511 2751 dbSNP
rs1229963629 2752 dbSNP
rs1386457522 2753 dbSNP
rs1400999149 2760 dbSNP
rs1317182065 2764 dbSNP
rs1350776537 2766 dbSNP
rs543771582 2767 dbSNP
rs1283884432 2773 dbSNP
rs1036724630 2780 dbSNP
rs1221588222 2794 dbSNP
rs534008187 2796 dbSNP
rs1206002332 2805 dbSNP
rs754207288 2812 dbSNP
rs1487513158 2814 dbSNP
rs1407567577 2816 dbSNP
rs1225125852 2818 dbSNP
rs1270025669 2825 dbSNP
rs1480421860 2840 dbSNP
rs1197367726 2853 dbSNP
rs1365095149 2857 dbSNP
rs1403742386 2858 dbSNP
rs758726455 2859 dbSNP
rs1157641472 2862 dbSNP
rs1302909774 2867 dbSNP
rs912519144 2869 dbSNP
rs986646392 2872 dbSNP
rs530224652 2890 dbSNP
rs1357900769 2897 dbSNP
rs1023007003 2908 dbSNP
rs1364698465 2912 dbSNP
rs1403096325 2916 dbSNP
rs1330791128 2921 dbSNP
rs922003384 2923 dbSNP
rs975244036 2924 dbSNP
rs1161891120 2933 dbSNP
rs1351847171 2933 dbSNP
rs1293047644 2942 dbSNP
rs1490285044 2949 dbSNP
rs1208593248 2951 dbSNP
rs140686258 2951 dbSNP
rs34172027 2954 dbSNP
rs370036558 2958 dbSNP
rs778314327 2961 dbSNP
rs887959366 2962 dbSNP
rs759889899 2971 dbSNP
rs968666882 2973 dbSNP
rs1163821814 2974 dbSNP
rs12612661 2977 dbSNP
rs139787419 2984 dbSNP
rs1180297781 2990 dbSNP
rs1390730741 3000 dbSNP
rs752774172 3009 dbSNP
rs1476276941 3018 dbSNP
rs956282556 3025 dbSNP
rs1454840114 3029 dbSNP
rs557689844 3030 dbSNP
rs1199936506 3032 dbSNP
rs910264406 3039 dbSNP
rs985890762 3044 dbSNP
rs1036357229 3045 dbSNP
rs1003011069 3051 dbSNP
rs1254148182 3052 dbSNP
rs148730948 3056 dbSNP
rs915039772 3060 dbSNP
rs1462256674 3061 dbSNP
rs988020070 3062 dbSNP
rs796425298 3063 dbSNP
rs1022689570 3064 dbSNP
rs1172334673 3066 dbSNP
rs767598589 3068 dbSNP
rs796116545 3069 dbSNP
rs898279174 3070 dbSNP
rs1036692486 3077 dbSNP
rs1398219548 3079 dbSNP
rs1337677065 3082 dbSNP
rs576234089 3082 dbSNP
rs1312861304 3083 dbSNP
rs558065603 3094 dbSNP
rs1051460425 3101 dbSNP
rs188908506 3102 dbSNP
rs1227414895 3106 dbSNP
rs10192906 3110 dbSNP
rs572176574 3111 dbSNP
rs553554312 3117 dbSNP
rs921113663 3118 dbSNP
rs535168613 3121 dbSNP
rs1482096381 3125 dbSNP
rs947460778 3129 dbSNP
rs914692122 3131 dbSNP
rs993715223 3132 dbSNP
rs10930664 3139 dbSNP
rs1431300881 3145 dbSNP
rs1369238231 3150 dbSNP
rs1186990298 3151 dbSNP
rs1422155755 3152 dbSNP
rs1263891953 3162 dbSNP
rs555719589 3163 dbSNP
rs1035918320 3171 dbSNP
rs982119832 3173 dbSNP
rs1386146735 3175 dbSNP
rs970361297 3176 dbSNP
rs1399706746 3182 dbSNP
rs1465284070 3185 dbSNP
rs1267348375 3186 dbSNP
rs1206558061 3194 dbSNP
rs1023544479 3195 dbSNP
rs944321980 3196 dbSNP
rs1309925834 3202 dbSNP
rs537882838 3203 dbSNP
rs1237320042 3206 dbSNP
rs1338197213 3207 dbSNP
rs1299106443 3208 dbSNP
rs1436536352 3212 dbSNP
rs1260882510 3217 dbSNP
rs898247784 3224 dbSNP
rs1050111858 3227 dbSNP
rs1015352471 3228 dbSNP
rs1319009252 3230 dbSNP
rs761571603 3231 dbSNP
rs1198592795 3240 dbSNP
rs776327847 3252 dbSNP
rs1003844874 3259 dbSNP
rs890798063 3260 dbSNP
rs1388863373 3262 dbSNP
rs577294478 3267 dbSNP
rs1162918325 3268 dbSNP
rs1296786852 3271 dbSNP
rs946445105 3275 dbSNP
rs1456519237 3278 dbSNP
rs1406160215 3283 dbSNP
rs1392112001 3284 dbSNP
rs573313366 3289 dbSNP
rs899775874 3290 dbSNP
rs184108136 3291 dbSNP
rs369021370 3292 dbSNP
rs1307290630 3294 dbSNP
rs1190877549 3295 dbSNP
rs1453146109 3297 dbSNP
rs771644373 3307 dbSNP
rs1267706148 3308 dbSNP
rs1208886297 3313 dbSNP
rs1293756791 3317 dbSNP
rs1052693816 3319 dbSNP
rs1221673371 3322 dbSNP
rs1353803881 3328 dbSNP
rs1178971447 3330 dbSNP
rs1276239607 3331 dbSNP
rs191460156 3332 dbSNP
rs1342135362 3333 dbSNP
rs1296069783 3334 dbSNP
rs1164731302 3335 dbSNP
rs1425623991 3335 dbSNP
rs34524533 3335 dbSNP
rs1444965024 3336 dbSNP
rs1298294950 3344 dbSNP
rs1489255782 3345 dbSNP
rs1444197948 3347 dbSNP
rs1316640975 3350 dbSNP
rs927848988 3350 dbSNP
rs1323237075 3351 dbSNP
rs946591288 3352 dbSNP
rs1491276222 3354 dbSNP
rs1491361884 3354 dbSNP
rs34739011 3354 dbSNP
rs397869651 3354 dbSNP
rs397870406 3354 dbSNP
rs556144466 3354 dbSNP
rs72109521 3354 dbSNP
rs765265570 3354 dbSNP
rs777285724 3354 dbSNP
rs982009227 3358 dbSNP
rs914625110 3365 dbSNP
rs1053144498 3369 dbSNP
rs1245160555 3379 dbSNP
rs1445641542 3380 dbSNP
rs1181689385 3383 dbSNP
rs1412037289 3393 dbSNP
rs1412193290 3397 dbSNP
rs927134267 3409 dbSNP
rs1372615346 3410 dbSNP
rs934639500 3410 dbSNP
rs1308767753 3413 dbSNP
rs527983495 3416 dbSNP
rs1388359553 3418 dbSNP
rs1243455117 3423 dbSNP
rs1166093935 3432 dbSNP
rs554998759 3443 dbSNP
rs1478935704 3455 dbSNP
rs559031546 3455 dbSNP
rs548838097 3468 dbSNP
rs1383001307 3476 dbSNP
rs1378051602 3477 dbSNP
rs970709529 3479 dbSNP
rs1489743561 3480 dbSNP
rs756800752 3481 dbSNP
rs10930663 3484 dbSNP
rs994032946 3488 dbSNP
rs974201859 3490 dbSNP
rs1265058579 3496 dbSNP
rs1019184931 3503 dbSNP
rs962876862 3506 dbSNP
rs1209677580 3508 dbSNP
rs1236142791 3512 dbSNP
rs1009135235 3514 dbSNP
rs1187618118 3522 dbSNP
rs1423485981 3525 dbSNP
rs1476565640 3527 dbSNP
rs1205366079 3529 dbSNP
rs1015321214 3533 dbSNP
rs889399181 3541 dbSNP
rs1050080047 3547 dbSNP
rs1331727368 3551 dbSNP
rs1346752769 3552 dbSNP
rs1003982051 3554 dbSNP
rs1010608161 3557 dbSNP
rs775003531 3576 dbSNP
rs112680430 3577 dbSNP
rs562996474 3581 dbSNP
rs1202714432 3588 dbSNP
rs1052196280 3589 dbSNP
rs1346307578 3596 dbSNP
rs1338401729 3598 dbSNP
rs1225236281 3603 dbSNP
rs1274678352 3604 dbSNP
rs955173136 3629 dbSNP
rs188664655 3632 dbSNP
rs927822477 3638 dbSNP
rs1449127779 3641 dbSNP
rs1409369852 3656 dbSNP
rs1046241676 3658 dbSNP
rs1368806303 3671 dbSNP
rs1487615380 3684 dbSNP
rs996558788 3686 dbSNP
rs947961524 3702 dbSNP
rs771708281 3719 dbSNP
rs991897135 3720 dbSNP
rs899744453 3722 dbSNP
rs532502224 3724 dbSNP
rs536186458 3786 dbSNP
rs745433827 3789 dbSNP
rs1010666169 3794 dbSNP
rs13383797 3801 dbSNP
rs1406760346 3815 dbSNP
rs1052244284 3820 dbSNP
rs763507211 3840 dbSNP
rs1019110556 3846 dbSNP
rs928771568 3850 dbSNP
rs1232571186 3855 dbSNP
rs1273320133 3873 dbSNP
rs1046146626 3884 dbSNP
rs1009102602 3896 dbSNP
rs1413846695 3897 dbSNP
rs1241105243 3898 dbSNP
rs567430263 3917 dbSNP
rs1472024996 3921 dbSNP
rs1351941618 3923 dbSNP
rs1230731498 3926 dbSNP
rs546030786 3928 dbSNP
rs1029248055 3931 dbSNP
rs1268620718 3934 dbSNP
rs1010952788 3936 dbSNP
rs916112985 3941 dbSNP
rs1196192770 3942 dbSNP
rs893482827 3949 dbSNP
rs1439998863 3955 dbSNP
rs1157664994 3973 dbSNP
rs1031147009 3976 dbSNP
rs746923715 3979 dbSNP
rs1426240663 3981 dbSNP
rs974332894 3985 dbSNP
rs999267256 3989 dbSNP
rs1384984101 4006 dbSNP
rs1321713918 4017 dbSNP
rs11894961 4025 dbSNP
rs1046209401 4026 dbSNP
rs908690793 4035 dbSNP
rs1375188969 4041 dbSNP
rs1248562029 4046 dbSNP
rs1266381606 4049 dbSNP
rs947930619 4058 dbSNP
rs1356315850 4060 dbSNP
rs895028614 4068 dbSNP
rs982977091 4072 dbSNP
rs1457778656 4078 dbSNP
rs1177628072 4082 dbSNP
rs1048315629 4087 dbSNP
rs371549841 4088 dbSNP
rs1188050895 4095 dbSNP
rs1367643074 4097 dbSNP
rs930610970 4098 dbSNP
rs1269104606 4104 dbSNP
rs920587568 4117 dbSNP
rs547632382 4122 dbSNP
rs1402561224 4126 dbSNP
rs972502681 4136 dbSNP
rs777302925 4142 dbSNP
rs1448819797 4151 dbSNP
rs553548333 4163 dbSNP
rs1339895616 4182 dbSNP
rs912018299 4184 dbSNP
rs1313974547 4188 dbSNP
rs1333462902 4191 dbSNP
rs1468103708 4196 dbSNP
rs955290894 4200 dbSNP
rs1243275494 4201 dbSNP
rs1390576565 4207 dbSNP
rs1159606727 4213 dbSNP
rs1318035539 4240 dbSNP
rs1197399893 4241 dbSNP
rs1255574671 4262 dbSNP
rs1456436936 4267 dbSNP
rs1200671371 4273 dbSNP
rs749627261 4275 dbSNP
rs147974335 4278 dbSNP
rs1183194508 4279 dbSNP
rs1424193780 4286 dbSNP
rs1477442618 4305 dbSNP
rs953532752 4306 dbSNP
rs1236315046 4307 dbSNP
rs200434139 4309 dbSNP
rs1398202355 4313 dbSNP
rs1467829029 4313 dbSNP
rs1303587939 4320 dbSNP
rs1466630649 4326 dbSNP
rs1249107701 4327 dbSNP
rs1300608704 4332 dbSNP
rs143506713 4335 dbSNP
rs1022144269 4336 dbSNP
rs1010761009 4338 dbSNP
rs1315403025 4340 dbSNP
rs1254980876 4343 dbSNP
rs892412016 4347 dbSNP
rs1030785641 4348 dbSNP
rs148839897 4349 dbSNP
rs1003418646 4352 dbSNP
rs1421598043 4356 dbSNP
rs1434917783 4358 dbSNP
rs756587979 4370 dbSNP
rs958557156 4372 dbSNP
rs1377231635 4379 dbSNP
rs1030655930 4380 dbSNP
rs1300472221 4381 dbSNP
rs190396787 4382 dbSNP
rs1045826042 4383 dbSNP
rs1450431172 4390 dbSNP
rs570383280 4427 dbSNP
rs948698455 4429 dbSNP
rs1399989757 4430 dbSNP
rs1296823922 4437 dbSNP
rs1369104434 4447 dbSNP
rs894496474 4454 dbSNP
rs1386799521 4459 dbSNP
rs1299964015 4460 dbSNP
rs1321038997 4467 dbSNP
rs1310116558 4477 dbSNP
rs1038401974 4493 dbSNP
rs1286551399 4497 dbSNP
rs1352642624 4499 dbSNP
rs1434124517 4512 dbSNP
rs906292320 4515 dbSNP
rs1343179563 4517 dbSNP
rs1024683357 4519 dbSNP
rs1191893190 4526 dbSNP
rs1012002118 4534 dbSNP
rs1405532574 4542 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gaccuaacUUCUCUUUUGGGUu 5'
                  ||||||||||| | 
Target 5' ------aaAAGAGAAAACCAAa 3'
1 - 16
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000392552.2 | 3UTR | AAAAGAGAAAACCAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
62 hsa-miR-6839-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059162 TXNIP thioredoxin interacting protein 2 2
MIRT064872 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT065802 HOXC8 homeobox C8 2 4
MIRT106005 SDCBP syndecan binding protein 2 2
MIRT275773 TFDP1 transcription factor Dp-1 2 2
MIRT314032 PAPD7 poly(A) RNA polymerase D7, non-canonical 2 2
MIRT360277 HIST1H2BE histone cluster 1 H2B family member e 2 8
MIRT360301 HIST1H2BH histone cluster 1 H2B family member h 2 2
MIRT450086 OR2A4 olfactory receptor family 2 subfamily A member 4 2 2
MIRT468815 RSRC2 arginine and serine rich coiled-coil 2 2 6
MIRT475093 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 4
MIRT477575 EIF1AD eukaryotic translation initiation factor 1A domain containing 2 2
MIRT483926 LCORL ligand dependent nuclear receptor corepressor like 2 6
MIRT504381 HIST1H1C histone cluster 1 H1 family member c 2 4
MIRT506970 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 6
MIRT507028 HIST1H3B histone cluster 1 H3 family member b 2 6
MIRT511561 HIST3H2BB histone cluster 3 H2B family member b 2 4
MIRT511650 HIST1H3D histone cluster 1 H3 family member d 2 6
MIRT511696 HIST1H2BL histone cluster 1 H2B family member l 2 4
MIRT511737 HIST1H2BB histone cluster 1 H2B family member b 2 6
MIRT511746 HIST1H2BA histone cluster 1 H2B family member a 2 8
MIRT515260 CSNK1E casein kinase 1 epsilon 2 2
MIRT516220 RAB3B RAB3B, member RAS oncogene family 2 4
MIRT523281 HIST1H1E histone cluster 1 H1 family member e 2 2
MIRT524121 DMXL1 Dmx like 1 2 2
MIRT530744 GPR82 G protein-coupled receptor 82 2 2
MIRT532214 CCDC117 coiled-coil domain containing 117 2 2
MIRT546182 TPRG1L tumor protein p63 regulated 1 like 2 2
MIRT558638 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT559562 ARF1 ADP ribosylation factor 1 2 4
MIRT560680 HIST1H1T histone cluster 1 H1 family member t 2 2
MIRT570746 AAK1 AP2 associated kinase 1 2 2
MIRT609518 RAB3IP RAB3A interacting protein 2 2
MIRT612583 SYNGAP1 synaptic Ras GTPase activating protein 1 2 4
MIRT615733 RIOK3 RIO kinase 3 2 2
MIRT616068 SIX1 SIX homeobox 1 2 2
MIRT617903 SGCD sarcoglycan delta 2 2
MIRT620851 SERPING1 serpin family G member 1 2 2
MIRT625107 SLC1A5 solute carrier family 1 member 5 2 2
MIRT625120 NUP93 nucleoporin 93 2 2
MIRT625893 LINC00632 long intergenic non-protein coding RNA 632 2 2
MIRT626569 MED7 mediator complex subunit 7 2 2
MIRT626694 ZFP14 ZFP14 zinc finger protein 2 4
MIRT626808 PRR11 proline rich 11 2 2
MIRT628131 HM13 histocompatibility minor 13 2 2
MIRT636596 DCAF5 DDB1 and CUL4 associated factor 5 2 2
MIRT649866 SLFN12L schlafen family member 12 like 2 2
MIRT652133 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT652663 TIMELESS timeless circadian clock 2 2
MIRT658335 FAM83D family with sequence similarity 83 member D 2 2
MIRT660615 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT666304 SLC22A3 solute carrier family 22 member 3 2 2
MIRT668528 ERGIC2 ERGIC and golgi 2 2 2
MIRT692510 PARD3 par-3 family cell polarity regulator 2 2
MIRT694784 DHFRL1 dihydrofolate reductase 2 2 2
MIRT700510 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT701438 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT710155 MTRF1L mitochondrial translational release factor 1 like 2 2
MIRT711436 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT716979 GPR155 G protein-coupled receptor 155 2 2
MIRT720155 POU2F2 POU class 2 homeobox 2 2 2
MIRT722512 DSTYK dual serine/threonine and tyrosine protein kinase 2 2

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