pre-miRNA Information
pre-miRNA hsa-mir-6819   
Genomic Coordinates chr22: 36286847 - 36286907
Description Homo sapiens miR-6819 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6819-3p
Sequence 41| AAGCCUCUGUCCCCACCCCAG |61
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1279530967 2 dbSNP
rs967579979 3 dbSNP
rs776891214 4 dbSNP
rs771166635 8 dbSNP
rs747037324 9 dbSNP
rs879248090 11 dbSNP
rs1485325191 12 dbSNP
rs778157316 16 dbSNP
Putative Targets

Gene Information
Gene Symbol WIZ   
Synonyms ZNF803
Description widely interspaced zinc finger motifs
Transcript NM_021241   
Expression
Putative miRNA Targets on WIZ
3'UTR of WIZ
(miRNA target sites are highlighted)
>WIZ|NM_021241|3'UTR
   1 CACAAAAGCATTCCAGATCCCCTCTCGTGCCACCTCTGTCTCCTCTTCTTCCTCCTCTGTGTCCTTGTCCCTCTTCCTCT
  81 TTCTTTCCGTTTCCAAAGGAGCAAGCCAAAACCTCAAACCGGCGCCCCTTGGGGGCCGGGCACACTACAGCCAGGGCGCC
 161 GGGAGCCAGCTAGCTGCCCTTCCCCCAGCCCGAGGACTCTGGGGCCACAGGGTGTCTTCCTTCAGCCCATGCCCACCTGG
 241 TCCAGCAGGGGCAGCAGCCAGGTCTCTGATGGCAGCCGGTCTGGTCACAGGGGAGGACAGCACTCCCCCGTCTAGCAGCC
 321 AGGCAGGGCGATGTCTGCCATCCGTGGCCATTTGCAAAGACCCCAAAGACCCCTGTTCTGGTTCCCTCTCTCCCCCATGA
 401 ATATCCTCTCACACACATGTACATGCGAACACACACAACACGCACCTCGTGAGACCCGGGACCTGCCCCGGACCCCCAGT
 481 TCCTGGGTTGAACGACCACATCATGCCACGGTGCTTGCTCAGGGGAAGCCACGCTCCCTCTGTGGGGCCTGCTGGGGCCT
 561 GGGAGCCCCCCACTGAGCCCACAATGCCACGGAAATCCTTGTTGGCTGCCCCCGAGAGGGGCCTTCCCAGCTGGGAAGAG
 641 CTCAGAGCTGACAGCTGCCTCCTGCCATGTCAAGGCCCCCCAAAGAGCCTCAGGGGCTCTGGGGCCCTGGAGGGTGGGGT
 721 TGGGGGGTGGGACTCTCCTCCCCCACTCCTGCTCCCTCTCCCTTTTCACTGTTGCTTTCTATGTATAGCTCCCTAGACCT
 801 TTCACTTTTTTAAAAACGCGTTTTGTGTAGAGAATAAGGAACGTGGATCTTTTTATTTTGCAATCCTGGGCCAGCTAGAA
 881 GCCAGGAGCTGATTGACCTTTTAACTTTTTTCAGTGGCCACATTTTGGTTATCGATGTACCTAGAAGTATGTAAATTAGA
 961 TTAAATTTCTCTTCTGGAAACACCCTGGGGCAGGCGGCCAGCGTGTGTTTTTCTGTCAAGTGGACAGGCTGGCATTGGCT
1041 GGCAGCCGGGGCTGGGATCGGGGCCTCCTCTGTCCAGAGCGCCATGGAGGCCCTGGGTTTTCCAGTTGGCCGCCAAGCCG
1121 ACCAGACGCAGCTGGGGATGAGCCCAAGTTCCCAGCTGTTGGCTCTTTAGGCCATGGCTGGGAGGGGGTCTCTGGCTGGC
1201 TGGCAAAGCGGCTCCAGTGAGCAGATGAACCAGGGTTCTGGGCAGCCTGTCTGGGAAGGGAGCCAGGATCAAGAAGCAGT
1281 TGAGGCTAGAGGAGCTTATCAAAGGCAGGAGCTACCAGCGAGGGTGTCAGGGACCCGTTGGGAGCATTTGGGTGGGGGCC
1361 AGTGGGGTTGTAGAGAGCTGGAACTCACCTGCTTTTAATACATGTGACTTCTAGTGAGACACATGCACCCCTGACCCAAG
1441 GAACATGCGGGGAAAAGAGGAGCCACTGGCTCCTTTGCGATGTTATTTATTTTCTCGCTCTGCAAATGTTTATTGAACAT
1521 TTCTGAGATTTTAAGAGATTTTGTTGGCTGCTCCTTCTTGTTTATTGCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaCCC---CACCCC--UGUCUC-CGAa 5'
            |||   ||||||  ::|||| ||| 
Target 5' ggGGGCCAGTGGGGTTGTAGAGAGCTg 3'
1354 - 1380 133.00 -23.50
2
miRNA  3' gaccccaccccuGUCUCCGAa 5'
                      |||:|||| 
Target 5' cccaaagagcctCAGGGGCTc 3'
679 - 699 129.00 -11.60
3
miRNA  3' gacCCCACC--CC-UGUCUCCGAa 5'
             || |||  || | || |||| 
Target 5' tctGGCTGGCTGGCAAAGCGGCTc 3'
1191 - 1214 124.00 -15.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31492718 5 COSMIC
COSN13784966 8 COSMIC
COSN30509429 19 COSMIC
COSN30482998 21 COSMIC
COSN27005087 26 COSMIC
COSN13784965 27 COSMIC
COSN30107985 36 COSMIC
COSN32053087 45 COSMIC
COSN30107999 57 COSMIC
COSN30525911 69 COSMIC
COSN31542907 79 COSMIC
COSN30146083 87 COSMIC
COSN31490392 88 COSMIC
COSN6138461 113 COSMIC
COSN31551601 123 COSMIC
COSN9349003 134 COSMIC
COSN9349002 136 COSMIC
COSN31555933 158 COSMIC
COSN9846428 312 COSMIC
COSN6138460 426 COSMIC
COSN16664720 846 COSMIC
COSN20848383 905 COSMIC
COSN32056173 1279 COSMIC
COSN9349001 1663 COSMIC
COSN22032001 1824 COSMIC
COSN16305113 1874 COSMIC
COSN27882011 1949 COSMIC
COSN7354928 2011 COSMIC
COSN15276966 2501 COSMIC
COSN17223304 2556 COSMIC
COSN5849599 2574 COSMIC
COSN22875598 2881 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs762393609 1 dbSNP
rs200535815 2 dbSNP
rs1193757950 3 dbSNP
rs1481482004 6 dbSNP
rs769327820 8 dbSNP
rs1252967481 9 dbSNP
rs747468941 10 dbSNP
rs1410292374 13 dbSNP
rs768685660 13 dbSNP
rs1321259056 22 dbSNP
rs1285174031 24 dbSNP
rs773431130 26 dbSNP
rs772749107 27 dbSNP
rs1327073652 29 dbSNP
rs556989338 30 dbSNP
rs779511518 32 dbSNP
rs755118754 34 dbSNP
rs1291359142 36 dbSNP
rs749310500 39 dbSNP
rs780386424 41 dbSNP
rs1173745148 43 dbSNP
rs1410114386 46 dbSNP
rs749004954 46 dbSNP
rs756277759 48 dbSNP
rs1307173340 52 dbSNP
rs76959204 52 dbSNP
rs1380080041 54 dbSNP
rs943243080 55 dbSNP
rs911736933 59 dbSNP
rs1343126598 60 dbSNP
rs987226693 64 dbSNP
rs7254099 66 dbSNP
rs1427657964 67 dbSNP
rs919153280 78 dbSNP
rs1256072303 81 dbSNP
rs973507660 84 dbSNP
rs1478290175 87 dbSNP
rs549606841 88 dbSNP
rs1191578501 104 dbSNP
rs1022760413 109 dbSNP
rs991228503 112 dbSNP
rs1167629717 120 dbSNP
rs1368417436 121 dbSNP
rs181424293 123 dbSNP
rs1035860181 124 dbSNP
rs1378369981 126 dbSNP
rs760550398 128 dbSNP
rs1299918017 129 dbSNP
rs1261053825 131 dbSNP
rs1227880824 136 dbSNP
rs1272788264 137 dbSNP
rs1220278567 138 dbSNP
rs1318142239 140 dbSNP
rs1211279108 143 dbSNP
rs1255829736 148 dbSNP
rs1482559371 154 dbSNP
rs188488566 157 dbSNP
rs374158094 158 dbSNP
rs546806004 160 dbSNP
rs1449568494 161 dbSNP
rs903444414 169 dbSNP
rs147533722 174 dbSNP
rs1313991238 176 dbSNP
rs1415903268 183 dbSNP
rs1176508928 184 dbSNP
rs1358433746 185 dbSNP
rs1322487965 186 dbSNP
rs1395983439 186 dbSNP
rs1404316207 187 dbSNP
rs564372699 191 dbSNP
rs550514300 192 dbSNP
rs530725461 194 dbSNP
rs561615613 202 dbSNP
rs1369983629 204 dbSNP
rs1166374990 214 dbSNP
rs541647474 221 dbSNP
rs1310861358 225 dbSNP
rs761224902 226 dbSNP
rs773225960 243 dbSNP
rs1269356555 251 dbSNP
rs1464922399 255 dbSNP
rs1207580366 260 dbSNP
rs1039647724 264 dbSNP
rs1478787001 272 dbSNP
rs149411804 277 dbSNP
rs772159913 278 dbSNP
rs116206524 283 dbSNP
rs1241255862 289 dbSNP
rs751810616 291 dbSNP
rs550800637 293 dbSNP
rs919191051 299 dbSNP
rs1037621010 300 dbSNP
rs117198015 309 dbSNP
rs1293174781 310 dbSNP
rs1365849193 311 dbSNP
rs562643618 314 dbSNP
rs10413192 329 dbSNP
rs991112205 330 dbSNP
rs959792996 343 dbSNP
rs1284312850 344 dbSNP
rs186126511 347 dbSNP
rs1221766839 352 dbSNP
rs1245805721 356 dbSNP
rs978020046 360 dbSNP
rs1184057182 365 dbSNP
rs542581029 366 dbSNP
rs1472222811 370 dbSNP
rs537003604 372 dbSNP
rs1415979283 374 dbSNP
rs529261756 375 dbSNP
rs1348381225 378 dbSNP
rs1381207637 385 dbSNP
rs1411958485 392 dbSNP
rs1308982270 393 dbSNP
rs1350323037 394 dbSNP
rs1011842240 397 dbSNP
rs866085334 398 dbSNP
rs1018249296 399 dbSNP
rs1228422388 408 dbSNP
rs1288592098 410 dbSNP
rs1376645582 411 dbSNP
rs1356788324 412 dbSNP
rs1206938769 414 dbSNP
rs3177570 416 dbSNP
rs868280783 417 dbSNP
rs1473138696 418 dbSNP
rs1162715955 419 dbSNP
rs1407322489 419 dbSNP
rs1411768187 423 dbSNP
rs1047118827 426 dbSNP
rs993777455 427 dbSNP
rs897649871 441 dbSNP
rs1428222555 448 dbSNP
rs778528891 449 dbSNP
rs760442198 457 dbSNP
rs941958492 458 dbSNP
rs1447997272 460 dbSNP
rs1283086160 463 dbSNP
rs560148558 466 dbSNP
rs915804374 469 dbSNP
rs1383304467 470 dbSNP
rs1274914821 472 dbSNP
rs1180441279 473 dbSNP
rs1055481253 476 dbSNP
rs1280529670 481 dbSNP
rs1442899695 486 dbSNP
rs1440019324 493 dbSNP
rs938313420 496 dbSNP
rs1451421369 499 dbSNP
rs181492369 503 dbSNP
rs1389812539 505 dbSNP
rs1447948216 509 dbSNP
rs556067459 510 dbSNP
rs928409752 517 dbSNP
rs977192946 518 dbSNP
rs1452945106 523 dbSNP
rs1414389978 524 dbSNP
rs1332786548 525 dbSNP
rs967500868 532 dbSNP
rs1208720091 533 dbSNP
rs1436685998 534 dbSNP
rs1297811970 542 dbSNP
rs1363981706 549 dbSNP
rs1224835181 551 dbSNP
rs1276388680 552 dbSNP
rs1345519212 562 dbSNP
rs1199745832 565 dbSNP
rs763300291 573 dbSNP
rs914751465 577 dbSNP
rs1466275079 584 dbSNP
rs775315783 590 dbSNP
rs990700215 591 dbSNP
rs1426957945 602 dbSNP
rs536124158 609 dbSNP
rs1378516020 610 dbSNP
rs1477908730 611 dbSNP
rs1241529245 613 dbSNP
rs566987661 614 dbSNP
rs986788205 615 dbSNP
rs1439108587 620 dbSNP
rs1320601618 622 dbSNP
rs1387356997 626 dbSNP
rs1380154845 631 dbSNP
rs1325129171 633 dbSNP
rs1331399746 634 dbSNP
rs1331889042 640 dbSNP
rs1323222297 645 dbSNP
rs1281203226 659 dbSNP
rs1403110437 662 dbSNP
rs1229002489 665 dbSNP
rs1267574267 666 dbSNP
rs1362554706 676 dbSNP
rs955370960 678 dbSNP
rs1451346455 679 dbSNP
rs1197684448 682 dbSNP
rs1254467554 686 dbSNP
rs1026182630 691 dbSNP
rs1420267845 694 dbSNP
rs547162256 699 dbSNP
rs898534616 700 dbSNP
rs1016114416 705 dbSNP
rs1006027936 708 dbSNP
rs1246857361 723 dbSNP
rs1352169267 725 dbSNP
rs780396970 726 dbSNP
rs1287655685 728 dbSNP
rs894424471 728 dbSNP
rs1055700286 730 dbSNP
rs1489608010 732 dbSNP
rs938364065 735 dbSNP
rs1355869935 738 dbSNP
rs1264742105 741 dbSNP
rs756409308 744 dbSNP
rs1483592637 745 dbSNP
rs1041740128 750 dbSNP
rs1249070205 754 dbSNP
rs1416736801 760 dbSNP
rs1188987533 761 dbSNP
rs1368613567 762 dbSNP
rs1161301961 777 dbSNP
rs1372108034 781 dbSNP
rs1430203639 782 dbSNP
rs1297488729 785 dbSNP
rs1371065668 787 dbSNP
rs945837753 789 dbSNP
rs1313526688 798 dbSNP
rs1340005041 799 dbSNP
rs1243977756 803 dbSNP
rs1277038561 805 dbSNP
rs539554431 809 dbSNP
rs914277827 817 dbSNP
rs990362630 819 dbSNP
rs942854553 820 dbSNP
rs1484525275 826 dbSNP
rs1063168 835 dbSNP
rs911514711 836 dbSNP
rs1282837255 843 dbSNP
rs10408467 845 dbSNP
rs15308 855 dbSNP
rs1443488969 859 dbSNP
rs1181329397 861 dbSNP
rs570572160 863 dbSNP
rs1449750861 864 dbSNP
rs1346157987 865 dbSNP
rs1169446469 874 dbSNP
rs1352614396 878 dbSNP
rs1467509147 884 dbSNP
rs1303370781 905 dbSNP
rs1405354036 912 dbSNP
rs987004192 922 dbSNP
rs955587180 933 dbSNP
rs577187028 934 dbSNP
rs1228033780 935 dbSNP
rs1025646808 936 dbSNP
rs1221935766 941 dbSNP
rs1342411802 957 dbSNP
rs973118325 971 dbSNP
rs1460447760 976 dbSNP
rs1201207164 979 dbSNP
rs1298855636 985 dbSNP
rs1399532574 989 dbSNP
rs1465064331 990 dbSNP
rs894028947 995 dbSNP
rs1052587954 996 dbSNP
rs1017418739 1002 dbSNP
rs1006080359 1003 dbSNP
rs1176647012 1013 dbSNP
rs1425631710 1013 dbSNP
rs1400017013 1015 dbSNP
rs894306852 1017 dbSNP
rs550577643 1019 dbSNP
rs1322598854 1033 dbSNP
rs906651080 1035 dbSNP
rs1046463214 1041 dbSNP
rs1002795734 1047 dbSNP
rs530786867 1048 dbSNP
rs1370134287 1059 dbSNP
rs1220201209 1063 dbSNP
rs916602937 1066 dbSNP
rs945691538 1071 dbSNP
rs892910599 1074 dbSNP
rs1443305461 1078 dbSNP
rs973771254 1080 dbSNP
rs561727042 1081 dbSNP
rs1489309761 1084 dbSNP
rs909790400 1104 dbSNP
rs986890859 1105 dbSNP
rs982648853 1111 dbSNP
rs1320248990 1120 dbSNP
rs1279148483 1127 dbSNP
rs750804696 1128 dbSNP
rs1400228293 1130 dbSNP
rs1359968188 1131 dbSNP
rs1268293392 1147 dbSNP
rs548224076 1157 dbSNP
rs1302921411 1158 dbSNP
rs976548212 1168 dbSNP
rs963013442 1169 dbSNP
rs964096103 1172 dbSNP
rs1289528822 1174 dbSNP
rs1373376457 1185 dbSNP
rs910005094 1187 dbSNP
rs1281580369 1188 dbSNP
rs1323111819 1189 dbSNP
rs1335813137 1189 dbSNP
rs1468089657 1190 dbSNP
rs1222851939 1194 dbSNP
rs1402016019 1206 dbSNP
rs1290691039 1209 dbSNP
rs1170956870 1210 dbSNP
rs528380175 1212 dbSNP
rs781632820 1216 dbSNP
rs1184212301 1228 dbSNP
rs1252485425 1234 dbSNP
rs1017949046 1243 dbSNP
rs1469608722 1245 dbSNP
rs1175524734 1257 dbSNP
rs559333900 1266 dbSNP
rs1416137542 1268 dbSNP
rs959406847 1276 dbSNP
rs990912571 1276 dbSNP
rs757818901 1278 dbSNP
rs1034205448 1279 dbSNP
rs1416801447 1282 dbSNP
rs1184068196 1284 dbSNP
rs751568231 1288 dbSNP
rs1335659143 1289 dbSNP
rs1010982095 1291 dbSNP
rs545934727 1294 dbSNP
rs971367796 1301 dbSNP
rs576871450 1304 dbSNP
rs771945428 1308 dbSNP
rs1020603212 1309 dbSNP
rs958322867 1311 dbSNP
rs1031194942 1315 dbSNP
rs879781913 1315 dbSNP
rs999677118 1319 dbSNP
rs764289689 1320 dbSNP
rs1207008779 1327 dbSNP
rs1046975687 1331 dbSNP
rs745672745 1331 dbSNP
rs1012334690 1335 dbSNP
rs563337366 1336 dbSNP
rs1037739495 1337 dbSNP
rs377704582 1338 dbSNP
rs1383641112 1349 dbSNP
rs543461413 1352 dbSNP
rs1451611051 1354 dbSNP
rs1169585101 1358 dbSNP
rs1396309439 1367 dbSNP
rs574511770 1370 dbSNP
rs763081450 1372 dbSNP
rs1360352038 1376 dbSNP
rs374523336 1377 dbSNP
rs1452764915 1378 dbSNP
rs1335562692 1379 dbSNP
rs1380083652 1386 dbSNP
rs1230247537 1387 dbSNP
rs909821478 1389 dbSNP
rs554587801 1392 dbSNP
rs1305794502 1393 dbSNP
rs934137705 1398 dbSNP
rs1270540642 1401 dbSNP
rs1047029351 1402 dbSNP
rs752899694 1405 dbSNP
rs1292075329 1406 dbSNP
rs1229011094 1407 dbSNP
rs1461787724 1412 dbSNP
rs1203085768 1418 dbSNP
rs941589511 1420 dbSNP
rs539376411 1422 dbSNP
rs1466417659 1424 dbSNP
rs1194233827 1428 dbSNP
rs573438312 1436 dbSNP
rs909878961 1438 dbSNP
rs1174783929 1439 dbSNP
rs922465601 1440 dbSNP
rs79022140 1443 dbSNP
rs963863413 1444 dbSNP
rs370353847 1448 dbSNP
rs1436756966 1449 dbSNP
rs189901656 1453 dbSNP
rs769929235 1463 dbSNP
rs1352446357 1465 dbSNP
rs1428411009 1465 dbSNP
rs989130842 1466 dbSNP
rs957688394 1469 dbSNP
rs1276447186 1472 dbSNP
rs1222895417 1473 dbSNP
rs971636274 1476 dbSNP
rs570635043 1479 dbSNP
rs1020235537 1481 dbSNP
rs773174663 1486 dbSNP
rs1010576447 1496 dbSNP
rs1030595749 1497 dbSNP
rs1385157523 1498 dbSNP
rs999750479 1505 dbSNP
rs550691023 1512 dbSNP
rs1239201381 1518 dbSNP
rs1480389081 1525 dbSNP
rs1174926767 1528 dbSNP
rs971346885 1530 dbSNP
rs1025147782 1532 dbSNP
rs1454922748 1539 dbSNP
rs1006483820 1550 dbSNP
rs1158738345 1550 dbSNP
rs185825683 1553 dbSNP
rs1404195472 1556 dbSNP
rs1281338181 1560 dbSNP
rs568159113 1561 dbSNP
rs1239838291 1563 dbSNP
rs1050781284 1569 dbSNP
rs1479768037 1570 dbSNP
rs1348805214 1571 dbSNP
rs1211917778 1583 dbSNP
rs371916389 1584 dbSNP
rs1490290568 1585 dbSNP
rs1038171261 1588 dbSNP
rs1037165389 1589 dbSNP
rs1290876530 1595 dbSNP
rs941627649 1596 dbSNP
rs368088414 1598 dbSNP
rs548563365 1601 dbSNP
rs1355536768 1602 dbSNP
rs375222723 1603 dbSNP
rs1165097201 1605 dbSNP
rs886460801 1607 dbSNP
rs1365888621 1613 dbSNP
rs1047723003 1616 dbSNP
rs1055161844 1618 dbSNP
rs193085013 1619 dbSNP
rs1372299281 1621 dbSNP
rs1370713373 1622 dbSNP
rs1391966385 1625 dbSNP
rs922504405 1626 dbSNP
rs150658540 1632 dbSNP
rs982186040 1633 dbSNP
rs1316034057 1634 dbSNP
rs1359107790 1635 dbSNP
rs942509916 1636 dbSNP
rs552099919 1637 dbSNP
rs1195784089 1642 dbSNP
rs1249136993 1649 dbSNP
rs957529307 1661 dbSNP
rs1032878295 1663 dbSNP
rs989202908 1664 dbSNP
rs1422020547 1674 dbSNP
rs1443677289 1675 dbSNP
rs71334767 1682 dbSNP
rs1381527056 1687 dbSNP
rs936401314 1693 dbSNP
rs923611038 1694 dbSNP
rs1158817688 1697 dbSNP
rs977692890 1699 dbSNP
rs1417772033 1729 dbSNP
rs971036008 1730 dbSNP
rs773723487 1732 dbSNP
rs532315462 1734 dbSNP
rs1490193630 1743 dbSNP
rs991024995 1754 dbSNP
rs1244144218 1757 dbSNP
rs563450407 1761 dbSNP
rs959790228 1762 dbSNP
rs1250157722 1776 dbSNP
rs543574896 1779 dbSNP
rs1204986671 1782 dbSNP
rs1243295154 1784 dbSNP
rs529805071 1785 dbSNP
rs560911833 1786 dbSNP
rs564517287 1787 dbSNP
rs141694628 1793 dbSNP
rs997923750 1794 dbSNP
rs945470013 1797 dbSNP
rs913956835 1805 dbSNP
rs748755741 1811 dbSNP
rs553604856 1812 dbSNP
rs942604385 1822 dbSNP
rs111618793 1823 dbSNP
rs1293932350 1824 dbSNP
rs1314460238 1826 dbSNP
rs889635922 1832 dbSNP
rs1224728842 1838 dbSNP
rs867803884 1841 dbSNP
rs546158912 1846 dbSNP
rs935818239 1856 dbSNP
rs1053512096 1866 dbSNP
rs577060330 1867 dbSNP
rs1201344635 1870 dbSNP
rs1243513208 1880 dbSNP
rs1379756838 1886 dbSNP
rs1177010777 1902 dbSNP
rs1480214995 1904 dbSNP
rs1427522990 1906 dbSNP
rs1195923198 1911 dbSNP
rs1185681130 1914 dbSNP
rs557125786 1917 dbSNP
rs925910708 1918 dbSNP
rs936432366 1918 dbSNP
rs1200073081 1920 dbSNP
rs923683224 1922 dbSNP
rs1428599451 1927 dbSNP
rs111692279 1929 dbSNP
rs953929470 1930 dbSNP
rs1262263949 1931 dbSNP
rs977764984 1944 dbSNP
rs1204496390 1949 dbSNP
rs747182741 1954 dbSNP
rs1287475927 1959 dbSNP
rs571281058 1961 dbSNP
rs779629699 1964 dbSNP
rs961449242 1968 dbSNP
rs918201936 1969 dbSNP
rs1344273693 1975 dbSNP
rs991499793 1979 dbSNP
rs1322383263 1987 dbSNP
rs959613504 2001 dbSNP
rs1418801552 2003 dbSNP
rs575203505 2006 dbSNP
rs189648584 2011 dbSNP
rs888610749 2012 dbSNP
rs746198019 2017 dbSNP
rs568171386 2031 dbSNP
rs1026384756 2038 dbSNP
rs1479439928 2040 dbSNP
rs554673473 2042 dbSNP
rs1405033236 2043 dbSNP
rs757691262 2046 dbSNP
rs747616230 2049 dbSNP
rs1469666007 2050 dbSNP
rs1157206662 2052 dbSNP
rs1367809792 2055 dbSNP
rs778146468 2057 dbSNP
rs1425715110 2062 dbSNP
rs534980537 2068 dbSNP
rs565856142 2073 dbSNP
rs1364218025 2091 dbSNP
rs1445072770 2099 dbSNP
rs376099753 2101 dbSNP
rs1280770009 2105 dbSNP
rs901854488 2114 dbSNP
rs1373439937 2117 dbSNP
rs1222783125 2121 dbSNP
rs1173103397 2123 dbSNP
rs371822276 2131 dbSNP
rs373211611 2132 dbSNP
rs1290851666 2133 dbSNP
rs1007222223 2134 dbSNP
rs889665689 2135 dbSNP
rs1053582186 2136 dbSNP
rs137912810 2143 dbSNP
rs1191167220 2149 dbSNP
rs532432154 2150 dbSNP
rs1445515090 2152 dbSNP
rs569905486 2153 dbSNP
rs549997896 2156 dbSNP
rs949133668 2164 dbSNP
rs1412074231 2165 dbSNP
rs917578893 2167 dbSNP
rs935870476 2170 dbSNP
rs56339335 2174 dbSNP
rs1054767199 2181 dbSNP
rs865873560 2185 dbSNP
rs1328744516 2189 dbSNP
rs1384540761 2190 dbSNP
rs909463178 2195 dbSNP
rs1049528657 2213 dbSNP
rs529817366 2214 dbSNP
rs1273660778 2220 dbSNP
rs1306900087 2226 dbSNP
rs1245111512 2229 dbSNP
rs1339429755 2230 dbSNP
rs984981973 2234 dbSNP
rs1224673927 2235 dbSNP
rs1342770304 2236 dbSNP
rs1476611517 2237 dbSNP
rs1316441169 2251 dbSNP
rs976848262 2253 dbSNP
rs561004349 2254 dbSNP
rs1452294116 2256 dbSNP
rs1419396912 2259 dbSNP
rs950849648 2263 dbSNP
rs919396472 2265 dbSNP
rs1167903555 2267 dbSNP
rs908324481 2274 dbSNP
rs983880763 2285 dbSNP
rs1333560646 2287 dbSNP
rs1410712106 2288 dbSNP
rs952402412 2289 dbSNP
rs1270595542 2295 dbSNP
rs184128945 2300 dbSNP
rs1216780387 2301 dbSNP
rs1265018304 2307 dbSNP
rs527311483 2308 dbSNP
rs564712387 2309 dbSNP
rs546131507 2310 dbSNP
rs970994869 2311 dbSNP
rs1276800801 2316 dbSNP
rs1449003386 2317 dbSNP
rs1025204978 2318 dbSNP
rs1396102192 2320 dbSNP
rs1477095763 2322 dbSNP
rs1202233945 2344 dbSNP
rs1010021909 2357 dbSNP
rs1469892783 2360 dbSNP
rs966115095 2361 dbSNP
rs752846852 2363 dbSNP
rs1402155703 2366 dbSNP
rs1459570061 2367 dbSNP
rs1386943284 2372 dbSNP
rs1318710170 2374 dbSNP
rs577120263 2382 dbSNP
rs557138190 2385 dbSNP
rs1285145736 2389 dbSNP
rs1000907276 2397 dbSNP
rs115055300 2408 dbSNP
rs1180322173 2417 dbSNP
rs1273194362 2418 dbSNP
rs1353104458 2422 dbSNP
rs1205960571 2424 dbSNP
rs954000640 2427 dbSNP
rs1487530875 2428 dbSNP
rs1225307494 2429 dbSNP
rs1049578325 2431 dbSNP
rs1480421896 2433 dbSNP
rs1197548867 2437 dbSNP
rs932469575 2444 dbSNP
rs1158788318 2447 dbSNP
rs765517890 2456 dbSNP
rs755292334 2458 dbSNP
rs555522556 2460 dbSNP
rs939900586 2463 dbSNP
rs908206321 2468 dbSNP
rs750223803 2473 dbSNP
rs1299212611 2475 dbSNP
rs1337619571 2476 dbSNP
rs767405694 2479 dbSNP
rs1279213534 2481 dbSNP
rs78139134 2483 dbSNP
rs1248589124 2489 dbSNP
rs555017088 2491 dbSNP
rs534783592 2492 dbSNP
rs566098959 2495 dbSNP
rs1208589884 2498 dbSNP
rs761656194 2509 dbSNP
rs191732630 2519 dbSNP
rs1182018474 2520 dbSNP
rs779274857 2524 dbSNP
rs909494195 2530 dbSNP
rs1165233496 2531 dbSNP
rs1327107783 2531 dbSNP
rs1049354900 2537 dbSNP
rs1388532719 2541 dbSNP
rs747419616 2549 dbSNP
rs1366296106 2555 dbSNP
rs1009828917 2556 dbSNP
rs1303644433 2557 dbSNP
rs1423895201 2563 dbSNP
rs774282379 2567 dbSNP
rs145253661 2568 dbSNP
rs569919026 2574 dbSNP
rs929521890 2580 dbSNP
rs1374953375 2581 dbSNP
rs1454838074 2586 dbSNP
rs1032358212 2589 dbSNP
rs1359176277 2594 dbSNP
rs550016559 2595 dbSNP
rs762405817 2596 dbSNP
rs1253614420 2605 dbSNP
rs1340739984 2611 dbSNP
rs919427562 2620 dbSNP
rs1237104998 2621 dbSNP
rs141523650 2625 dbSNP
rs1185058408 2627 dbSNP
rs1160072511 2628 dbSNP
rs1243488407 2632 dbSNP
rs567329288 2634 dbSNP
rs1162490553 2641 dbSNP
rs1050467833 2655 dbSNP
rs186892284 2656 dbSNP
rs182950097 2659 dbSNP
rs957352674 2660 dbSNP
rs1454716804 2661 dbSNP
rs572862750 2668 dbSNP
rs1337670385 2672 dbSNP
rs1378833037 2677 dbSNP
rs192204555 2678 dbSNP
rs79101494 2688 dbSNP
rs886994779 2695 dbSNP
rs775019264 2696 dbSNP
rs1315564961 2703 dbSNP
rs8110422 2707 dbSNP
rs926396947 2714 dbSNP
rs1482748074 2716 dbSNP
rs1288862252 2717 dbSNP
rs138785357 2721 dbSNP
rs745577060 2723 dbSNP
rs563601493 2724 dbSNP
rs1192864791 2725 dbSNP
rs1421519041 2729 dbSNP
rs1471008976 2729 dbSNP
rs1350424532 2736 dbSNP
rs1277954942 2740 dbSNP
rs918093761 2743 dbSNP
rs1464791277 2756 dbSNP
rs1235737013 2760 dbSNP
rs1290984688 2762 dbSNP
rs1346432931 2763 dbSNP
rs988690516 2768 dbSNP
rs1013418763 2769 dbSNP
rs1276882132 2779 dbSNP
rs543627899 2782 dbSNP
rs1032538607 2783 dbSNP
rs1283446097 2790 dbSNP
rs1311241101 2797 dbSNP
rs1054870640 2805 dbSNP
rs1207605442 2815 dbSNP
rs1262206040 2816 dbSNP
rs979442109 2818 dbSNP
rs575003184 2822 dbSNP
rs1215742790 2824 dbSNP
rs561306005 2826 dbSNP
rs554799559 2836 dbSNP
rs1363635469 2844 dbSNP
rs1481398281 2852 dbSNP
rs1048720686 2858 dbSNP
rs929551670 2860 dbSNP
rs1401018875 2861 dbSNP
rs1384008300 2863 dbSNP
rs1431596763 2863 dbSNP
rs1156411149 2864 dbSNP
rs1161558562 2867 dbSNP
rs997615471 2868 dbSNP
rs1481198661 2870 dbSNP
rs535936548 2872 dbSNP
rs1040983415 2873 dbSNP
rs1479171370 2880 dbSNP
rs1004439078 2884 dbSNP
rs944874523 2889 dbSNP
rs910653832 2892 dbSNP
rs1244277357 2897 dbSNP
rs1308720537 2898 dbSNP
rs1354027054 2900 dbSNP
rs1239118946 2904 dbSNP
rs541553601 2911 dbSNP
rs1446744434 2912 dbSNP
rs1490815969 2912 dbSNP
rs887052081 2913 dbSNP
rs1246132799 2914 dbSNP
rs986243905 2928 dbSNP
rs1048337122 2934 dbSNP
rs1408948572 2936 dbSNP
rs930998301 2939 dbSNP
rs904867851 2940 dbSNP
rs936061710 2943 dbSNP
rs572444437 2945 dbSNP
rs949181275 2946 dbSNP
rs770527378 2947 dbSNP
rs1425778018 2955 dbSNP
rs1348740465 2958 dbSNP
rs925966076 2972 dbSNP
rs1299422043 2977 dbSNP
rs977386834 2978 dbSNP
rs1342469762 2980 dbSNP
rs988352163 2981 dbSNP
rs966639847 2989 dbSNP
rs1020853921 2999 dbSNP
rs992431466 3001 dbSNP
rs1306732849 3002 dbSNP
rs1431438397 3003 dbSNP
rs1325829350 3004 dbSNP
rs935495287 3008 dbSNP
rs960585545 3009 dbSNP
rs776853948 3026 dbSNP
rs1315942078 3027 dbSNP
rs558994570 3036 dbSNP
rs1470869733 3048 dbSNP
rs1406266513 3049 dbSNP
rs1033908251 3052 dbSNP
rs757830893 3054 dbSNP
rs1457439874 3058 dbSNP
rs1177009792 3061 dbSNP
rs1245315799 3068 dbSNP
rs1421063461 3068 dbSNP
rs1186637242 3071 dbSNP
rs1475361738 3072 dbSNP
rs1445644935 3074 dbSNP
rs1001957583 3079 dbSNP
rs887491129 3080 dbSNP
rs75501183 3082 dbSNP
rs200601002 3083 dbSNP
rs36206067 3086 dbSNP
rs398059588 3086 dbSNP
rs1027356428 3087 dbSNP
rs1412216113 3087 dbSNP
rs538994358 3092 dbSNP
rs143172871 3099 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gaccccaccccuGUCUCCgaa 5'
                      :|||||   
Target 5' ------------UAGAGGagc 3'
1 - 9
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000389282.4 | 3UTR | UAGAGGAGCUUAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000389282.4 | 3UTR | UAGAGGAGCUUAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
108 hsa-miR-6819-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT358318 PANK3 pantothenate kinase 3 2 2
MIRT454719 UBQLNL ubiquilin like 2 2
MIRT471362 PEG10 paternally expressed 10 2 2
MIRT478101 DLG5 discs large MAGUK scaffold protein 5 2 4
MIRT495554 GOLGA6L4 golgin A6 family-like 4 2 2
MIRT495587 GOLGA6L10 golgin A6 family-like 10 2 2
MIRT508315 RPL18 ribosomal protein L18 2 4
MIRT529183 ADAM33 ADAM metallopeptidase domain 33 2 2
MIRT532035 FHDC1 FH2 domain containing 1 2 2
MIRT545131 ANXA5 annexin A5 2 2
MIRT567288 HNRNPL heterogeneous nuclear ribonucleoprotein L 2 2
MIRT568094 CEBPG CCAAT/enhancer binding protein gamma 2 2
MIRT573291 DLX4 distal-less homeobox 4 2 2
MIRT575169 Fam120c family with sequence similarity 120, member C 2 2
MIRT609495 DNASE1L3 deoxyribonuclease 1 like 3 2 2
MIRT611264 EHD3 EH domain containing 3 2 2
MIRT613580 POC5 POC5 centriolar protein 2 2
MIRT616520 C9orf170 chromosome 9 open reading frame 170 2 2
MIRT617098 ZNF667 zinc finger protein 667 2 2
MIRT618268 DDX51 DEAD-box helicase 51 2 2
MIRT618294 ZNF682 zinc finger protein 682 2 2
MIRT618617 SHOX short stature homeobox 2 2
MIRT619741 SRFBP1 serum response factor binding protein 1 2 2
MIRT619784 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT621119 SP110 SP110 nuclear body protein 2 2
MIRT622530 RAD51 RAD51 recombinase 2 2
MIRT623088 NME6 NME/NM23 nucleoside diphosphate kinase 6 2 2
MIRT623938 FKBP14 FK506 binding protein 14 2 2
MIRT624389 CD84 CD84 molecule 2 2
MIRT624860 ABI2 abl interactor 2 2 2
MIRT628752 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT632243 VTA1 vesicle trafficking 1 2 2
MIRT632987 E2F2 E2F transcription factor 2 2 2
MIRT633695 RBM43 RNA binding motif protein 43 2 2
MIRT633766 CENPBD1 CENPB DNA-binding domain containing 1 2 2
MIRT633808 ZNF91 zinc finger protein 91 2 2
MIRT638914 CBLN2 cerebellin 2 precursor 2 2
MIRT641298 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT642123 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT642179 HEBP2 heme binding protein 2 2 2
MIRT642617 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT643325 TMEM151B transmembrane protein 151B 2 2
MIRT644534 TMEM134 transmembrane protein 134 2 2
MIRT645820 OMA1 OMA1 zinc metallopeptidase 2 2
MIRT646093 MGST3 microsomal glutathione S-transferase 3 2 2
MIRT646861 SLC35E4 solute carrier family 35 member E4 2 2
MIRT647466 DZIP1L DAZ interacting zinc finger protein 1 like 2 2
MIRT647702 NADSYN1 NAD synthetase 1 2 2
MIRT648082 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT648547 TMEM169 transmembrane protein 169 2 2
MIRT648690 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT649747 GNB5 G protein subunit beta 5 2 2
MIRT650154 ZNF426 zinc finger protein 426 2 2
MIRT650450 CPXM2 carboxypeptidase X, M14 family member 2 2 2
MIRT650943 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT651544 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT652304 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT652890 SYVN1 synoviolin 1 2 2
MIRT654222 RNF19B ring finger protein 19B 2 2
MIRT654676 PSMB5 proteasome subunit beta 5 2 2
MIRT658249 FAXC failed axon connections homolog 2 2
MIRT658363 FAM65B RHO family interacting cell polarization regulator 2 2 2
MIRT659622 CELF1 CUGBP Elav-like family member 1 2 2
MIRT660171 BNIP3L BCL2 interacting protein 3 like 2 2
MIRT660634 ANKRD52 ankyrin repeat domain 52 2 2
MIRT662428 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT662984 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT663939 ZNF554 zinc finger protein 554 2 2
MIRT666960 PKHD1 PKHD1, fibrocystin/polyductin 2 2
MIRT667945 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT668847 CYCS cytochrome c, somatic 2 2
MIRT671792 RGS17 regulator of G protein signaling 17 2 2
MIRT672382 RPL37 ribosomal protein L37 2 2
MIRT673516 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 4
MIRT674716 FAM73A mitoguardin 1 2 2
MIRT676352 KLF8 Kruppel like factor 8 2 2
MIRT677820 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT678440 PDE4C phosphodiesterase 4C 2 2
MIRT678499 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT679243 LRP10 LDL receptor related protein 10 2 2
MIRT693607 SLC39A1 solute carrier family 39 member 1 2 2
MIRT695927 ZNF174 zinc finger protein 174 2 2
MIRT697987 TSPAN6 tetraspanin 6 2 2
MIRT700821 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT701350 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT702348 KLHL7 kelch like family member 7 2 2
MIRT703387 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT703883 ERBB2IP erbb2 interacting protein 2 2
MIRT708237 PPP1R26 protein phosphatase 1 regulatory subunit 26 2 2
MIRT708629 NUDT18 nudix hydrolase 18 2 2
MIRT708990 CABP4 calcium binding protein 4 2 2
MIRT709804 FOXE1 forkhead box E1 2 2
MIRT710203 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT710248 VAMP1 vesicle associated membrane protein 1 2 2
MIRT710281 FGF1 fibroblast growth factor 1 2 2
MIRT712992 IRGQ immunity related GTPase Q 2 2
MIRT713887 MOB3A MOB kinase activator 3A 2 2
MIRT715600 ADAM17 ADAM metallopeptidase domain 17 2 2
MIRT715639 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT715686 FRK fyn related Src family tyrosine kinase 2 2
MIRT717053 WIZ widely interspaced zinc finger motifs 2 2
MIRT717611 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT721539 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT722096 SUSD1 sushi domain containing 1 2 2
MIRT722435 HRNR hornerin 2 2
MIRT722855 NEGR1 neuronal growth regulator 1 2 2
MIRT724621 SNAP25 synaptosome associated protein 25 2 2
MIRT724777 PSG4 pregnancy specific beta-1-glycoprotein 4 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6819 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6819-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6819-3p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-6819-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-6819-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-6819-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6819-3p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-6819-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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