pre-miRNA Information
pre-miRNA hsa-mir-2355   
Genomic Coordinates chr2: 207109987 - 207110073
Description Homo sapiens miR-2355 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-2355-5p
Sequence 11| AUCCCCAGAUACAAUGGACAA |31
Evidence Experimental
Experiments SOLiD
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 2 - 207110063 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1268296297 4 dbSNP
rs1361046879 5 dbSNP
rs1219551997 6 dbSNP
rs1295756820 12 dbSNP
rs1345273529 15 dbSNP
rs977145706 15 dbSNP
rs1209629984 20 dbSNP
rs759940260 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TMEM246   
Synonyms C9orf125
Description transmembrane protein 246
Transcript NM_032342   
Expression
Putative miRNA Targets on TMEM246
3'UTR of TMEM246
(miRNA target sites are highlighted)
>TMEM246|NM_032342|3'UTR
   1 GGTGCCAAGAGATGCCTTTCTGAAGTTGGCCACTTCTTGAAGATTCAAATATTTATCTCTTTATTTAGACATGGTTGCCT
  81 GCAGGTATTTCACTGTTTACTGTTGTTAGAGATATAGGCACTGGGGCAGCTGAGGAACCTCAATATGTTAAGAGCCTTGG
 161 CTTTGGTAGCCTCCTGGCAGGAGCAGCAGTTTGCCACAGGTCCGGACCTCTCCCTCCACACAGCCACACTGCCTCATGCA
 241 GTCTGACCCACCCAGTGAGGGTGCATTTGAACACTGATTATATTCTCCATTTGTTTTTAAGCTCTGCTTTGTGTTAGAGC
 321 TTGTGACTGCCAAAAATTTTGTGCACAGTGATATGACTGTTTTAGGATCTTAAGGGTAGAATTTTGTGAAAGGTGAGATC
 401 CTTTGGAATTGAGTTCTTTCTCATTGGGTATGAAAATGGATGTATGTTTAGAATATATGCCCAACGAGGCAGGACCATGT
 481 GGATAGATTCCATTTGTTTCCTTGACCTGATGTAATAAAAACTGATAAAAGCCGTGCAGTGCCCGGCATCTTGGAGGCAG
 561 GTGATCTGGCTTTTCTGTTACCTGGGATTTTCTTTTCCTATATATCTGTAGTGCACTGATAATTGATATTGTTAGTGAGA
 641 ACTTTAAGGCACGACAAGATCTGGAAGAGCTTGTGAACCATCAAAGTCAGATTGCTTATGTTGAGTAGTGATTTAACATT
 721 GAACATTTCTGTACTACTCTGACTCTTTGAAAATTGGACATTTCAGAATGATACAATATAGGGGAGCTCTTTACAAGTAG
 801 CATATCATTTTTCCTGACTTTCCTGGCTGACTGCTTACCTTCATTTCTTTTTCTTCTAGGTAGCATGATGTTATAGAAAA
 881 AAAAAAAAAAAAATCATGGACTGAAGTCAGAAGACCTGACCTTTTATTTCAGATCTCTGCCATGGCCTAACGACGTGACC
 961 ACCTTGGGCAGGTCATATAATCACTCTGGGTCTCAATTTCTTCACCTGTAAAATGAGGACAGTAATACTTACATGTTAAA
1041 GTTGCCTTGAGGATTAAATGGCAGAATATATGTAAAACACCTAGCAAGTGCTTAGTCCATAGAAGACGCTTGGCAAACTT
1121 TTCTCTCCTATAATAAACATATACAACTCAAGCTTATTTCGGAAAAAGATATTGGTGATGTTGTTTAAAGTATGAGATAG
1201 GGCATGGAGCTGCCACCTATGTACCAGCTATTCCAGATGACCAAGCCCTGCTAGAATAAAGACTGACTTTTCATTGTGAC
1281 CTCTGAAGGATGTGCAGCTCAGCTTTCACCTATCCCCACGTTCACCCAAGCCAAAAAGAAGAATTGTTCATTCAAACTGG
1361 AAATGATCTCCAGCTTGGAAATGAGACTCCTCATGAGCTTATTCTAAGATCAGAGTCTGAAAATTATTTTCTCAAAAGTT
1441 ACAAATAAATGTCTTTTAACAGTACTGTCAGACTAGTGACCAACAAGTTACTTTATGAGGATGGATGATGATATTAGAGT
1521 TCAAGCAATTGTCCAGTTTGTTTCGATGCCACAGTTTGCTTTTAAATTCCCATAGTGAGCTTCCATCTTGAGACCCACTC
1601 AACACAGAAGGATTACATAAAGGTTGATCACCCACGCTCTACAGATGAACAAATTGAGACCCAGAGATGCTAAACTGCTC
1681 TGCAGGTCACAAACCTGAACAGCAGCATAGCCAAAATGGGAACGGAGCTCTTCTGACTTCAAGCCCCTGCACTTTTTTCT
1761 TAACCACATTAATTTTATGAATATCTATGTGGTCAAAGTCTCTTTTGTAAAATCTGAGTATAAGCTGAACTAGATCATGT
1841 CTCTGTAAGCTAAGATGGCAGAAACACATTGTCATGTTAGTTTGGAGGAGCAAACAGATATAAGTATGTGTTGTAATGTT
1921 ATAGTGAGCTGTTATGTATCCCCCAGCAATGTCCAAAGTGATCAGAGCTACTAGATGACTTATTACAATGTTCAGATCCC
2001 ACTCCTTCATTCCTCCTCTCTCAGTGACCTGTCTACCCCCAAGCTTTAGAACTGAGCTCTCTCCAACTTAGAACTCATTA
2081 GAGTTTGTTGCATTAGTGATTGGATCTCCTCATGAAAGTTTTTTGACCAATGACAGTAGAGCCCCTTTAAGCTAGCCAGG
2161 CCCAAGATAGGGAAGCACTGCTGGTTTACATTTCTGCTCTTTCTAATTCAGTTGTCTATTGCATGCAGACATCCCCTGCC
2241 CGACTTCTCCATTATGGAAGGCTAAGGCCATCCTTCCTTGTCCAGTTTCTCTACCTACACACTAACATGCCTTTTCCCCA
2321 TGGAGTGAACTCTGCCAGTTGTCTTTGGACATTTTCTGCAGATGCAGGCTCAGTTCTGCTCTTTTGTTCCCACCCACTTC
2401 TAGATCTTCCTCCATTTAATCCCTTATTCTTATAAGGAGTCTAATTTTTGTGTATTGTCCTTGATTAGGGCAGCTGACAG
2481 CTTTACACCAAAGCTGAAGTCTCTCACTTAATCCTAAGCAAGGGGCTAGGGAGAACTAAGATATCCTTCCCATATCAAGG
2561 GATATAGGTTACTAGAAGGGTGGAGGTCTCTTAACAGGCTCACTCACCTTTCAGAGTTTAAATTATGGTCAGGCTTAAGA
2641 AGCTCTCTCTTGTGACTGAGTGTATTGCATAGACATGTCTGTGAAAATAAAAGCACCCATTTTGCTAAGGCTTTCTGAGA
2721 AGAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aacagGUAACAUAGACCCCua 5'
               :|| |   ||||||  
Target 5' agagaTATAGGCACTGGGGca 3'
108 - 128 124.00 -11.20
2
miRNA  3' aacAGGUAACAUAGACCCcua 5'
             ||::|  || |||||   
Target 5' tttTCTGT--TACCTGGGatt 3'
571 - 589 114.00 -7.32
3
miRNA  3' aaCAG-GUAACA-U-AGACCCcua 5'
            ||| :||  | | ||||||   
Target 5' agGTCATATAATCACTCTGGGtct 3'
970 - 993 111.00 -9.15
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN20076696 4 COSMIC
COSN31527254 9 COSMIC
COSN30476103 11 COSMIC
COSN30469681 16 COSMIC
COSN14768478 21 COSMIC
COSN30466637 22 COSMIC
COSN30510264 24 COSMIC
COSN30499197 32 COSMIC
COSN31535098 36 COSMIC
COSN30103853 37 COSMIC
COSN21350305 55 COSMIC
COSN30100665 58 COSMIC
COSN31493825 59 COSMIC
COSN30686902 70 COSMIC
COSN30161570 93 COSMIC
COSN31567642 111 COSMIC
COSN31498313 122 COSMIC
COSN31598308 156 COSMIC
COSN4884838 162 COSMIC
COSN30510326 172 COSMIC
COSN25080222 269 COSMIC
COSN20821690 320 COSMIC
COSN17489822 324 COSMIC
COSN9461346 825 COSMIC
COSN8114475 891 COSMIC
COSN18955726 1009 COSMIC
COSN8292205 1019 COSMIC
COSN9691888 1209 COSMIC
COSN21066740 2059 COSMIC
COSN20888935 2150 COSMIC
rs1929494 1389 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs146827807 2 dbSNP
rs750873062 7 dbSNP
rs1375320776 13 dbSNP
rs779493509 16 dbSNP
rs15889 21 dbSNP
rs1476029524 24 dbSNP
rs1244188270 26 dbSNP
rs367926971 32 dbSNP
rs1446609849 34 dbSNP
rs984969512 39 dbSNP
rs760884906 46 dbSNP
rs753006999 48 dbSNP
rs1227697521 51 dbSNP
rs748612601 55 dbSNP
rs1309082504 61 dbSNP
rs918916648 63 dbSNP
rs1038446498 68 dbSNP
rs941397117 71 dbSNP
rs908541826 81 dbSNP
rs983153269 82 dbSNP
rs1243856760 83 dbSNP
rs975744218 97 dbSNP
rs532086212 115 dbSNP
rs1422268535 126 dbSNP
rs1410938980 127 dbSNP
rs183328761 128 dbSNP
rs1282922649 130 dbSNP
rs1398474256 133 dbSNP
rs1463767052 143 dbSNP
rs980936680 166 dbSNP
rs1387664482 170 dbSNP
rs986291655 171 dbSNP
rs1446615633 181 dbSNP
rs967867006 183 dbSNP
rs542671645 195 dbSNP
rs781749552 198 dbSNP
rs41281043 201 dbSNP
rs1031661277 203 dbSNP
rs1002853445 204 dbSNP
rs1156255946 208 dbSNP
rs114176844 214 dbSNP
rs540012601 227 dbSNP
rs1044452461 228 dbSNP
rs1208097462 251 dbSNP
rs1243861061 253 dbSNP
rs1429517235 254 dbSNP
rs954634663 257 dbSNP
rs1013422559 271 dbSNP
rs369899000 272 dbSNP
rs747413662 280 dbSNP
rs577767389 281 dbSNP
rs1028900257 283 dbSNP
rs1178197352 284 dbSNP
rs996044086 287 dbSNP
rs1413466575 289 dbSNP
rs887944056 298 dbSNP
rs898995754 316 dbSNP
rs1037899645 318 dbSNP
rs1263670270 319 dbSNP
rs1400566291 320 dbSNP
rs111954724 334 dbSNP
rs141162447 337 dbSNP
rs1049254227 338 dbSNP
rs1277431920 351 dbSNP
rs1186896936 355 dbSNP
rs139576102 359 dbSNP
rs1005640550 366 dbSNP
rs1225084241 367 dbSNP
rs1485471752 369 dbSNP
rs929540676 376 dbSNP
rs887160199 385 dbSNP
rs537737053 391 dbSNP
rs3739726 393 dbSNP
rs1286469377 394 dbSNP
rs1324420937 397 dbSNP
rs1041037653 417 dbSNP
rs928256030 422 dbSNP
rs1231420084 424 dbSNP
rs778513715 428 dbSNP
rs1377363951 429 dbSNP
rs186020973 439 dbSNP
rs1045288800 442 dbSNP
rs910210698 445 dbSNP
rs1297547464 446 dbSNP
rs985895256 450 dbSNP
rs1358540341 451 dbSNP
rs967821982 458 dbSNP
rs915063007 460 dbSNP
rs1323975359 464 dbSNP
rs987998143 465 dbSNP
rs1363593833 466 dbSNP
rs1281472161 470 dbSNP
rs990026566 471 dbSNP
rs956546104 474 dbSNP
rs1470657785 486 dbSNP
rs1284583608 488 dbSNP
rs1362236448 501 dbSNP
rs1210886665 507 dbSNP
rs956501803 511 dbSNP
rs923668241 512 dbSNP
rs1255438657 533 dbSNP
rs1034907954 534 dbSNP
rs756923865 544 dbSNP
rs971384172 545 dbSNP
rs1023426859 548 dbSNP
rs1374451088 552 dbSNP
rs1157512562 557 dbSNP
rs1377876846 563 dbSNP
rs1012996179 564 dbSNP
rs887891761 566 dbSNP
rs996097070 568 dbSNP
rs562427859 581 dbSNP
rs542407641 596 dbSNP
rs898005543 602 dbSNP
rs112926478 603 dbSNP
rs1005098053 610 dbSNP
rs944990113 611 dbSNP
rs1246189839 622 dbSNP
rs1265349671 627 dbSNP
rs1354734508 628 dbSNP
rs1198813755 632 dbSNP
rs1259652375 633 dbSNP
rs778429329 648 dbSNP
rs1457939403 649 dbSNP
rs1177581764 652 dbSNP
rs1235853633 657 dbSNP
rs1425019624 669 dbSNP
rs1188216308 671 dbSNP
rs1367819804 675 dbSNP
rs1456254775 698 dbSNP
rs756021624 701 dbSNP
rs887221228 703 dbSNP
rs752563241 704 dbSNP
rs1465327354 714 dbSNP
rs72743370 732 dbSNP
rs1003539798 734 dbSNP
rs1396646430 736 dbSNP
rs1227111141 743 dbSNP
rs1339212011 744 dbSNP
rs1230185569 746 dbSNP
rs1279269301 747 dbSNP
rs1050542121 748 dbSNP
rs1197678013 754 dbSNP
rs1340546436 770 dbSNP
rs906548262 772 dbSNP
rs1254796947 773 dbSNP
rs1045012348 778 dbSNP
rs189442616 781 dbSNP
rs914972555 782 dbSNP
rs1477358433 791 dbSNP
rs1168850666 797 dbSNP
rs1361109493 803 dbSNP
rs1466666053 812 dbSNP
rs987904765 833 dbSNP
rs751452470 836 dbSNP
rs935120691 839 dbSNP
rs927790415 844 dbSNP
rs1400109823 851 dbSNP
rs1384445416 853 dbSNP
rs1299321802 866 dbSNP
rs1382704831 870 dbSNP
rs1332870005 872 dbSNP
rs1393819102 874 dbSNP
rs1007486242 876 dbSNP
rs1168183442 877 dbSNP
rs60771596 877 dbSNP
rs1428848016 878 dbSNP
rs1388158250 881 dbSNP
rs1165241371 883 dbSNP
rs1445103460 886 dbSNP
rs1053981643 887 dbSNP
rs1254931342 890 dbSNP
rs552039669 891 dbSNP
rs1185458050 892 dbSNP
rs879095116 893 dbSNP
rs1159857569 894 dbSNP
rs1191218256 894 dbSNP
rs1426934059 894 dbSNP
rs1433986094 894 dbSNP
rs1487877665 894 dbSNP
rs7857668 894 dbSNP
rs1434899171 895 dbSNP
rs148013361 895 dbSNP
rs982049079 895 dbSNP
rs1491029298 896 dbSNP
rs1195504823 900 dbSNP
rs969745664 902 dbSNP
rs1294320092 909 dbSNP
rs1387013593 913 dbSNP
rs560065408 915 dbSNP
rs1309970741 916 dbSNP
rs991425333 920 dbSNP
rs1043657724 926 dbSNP
rs974375467 934 dbSNP
rs1282979781 939 dbSNP
rs1214273401 943 dbSNP
rs1009430886 944 dbSNP
rs952058909 945 dbSNP
rs963342546 949 dbSNP
rs186600790 951 dbSNP
rs867062043 952 dbSNP
rs548964153 954 dbSNP
rs1019563242 955 dbSNP
rs1379701248 960 dbSNP
rs1035450147 968 dbSNP
rs1167463753 975 dbSNP
rs766662084 982 dbSNP
rs906600515 988 dbSNP
rs1292649429 999 dbSNP
rs889388755 1003 dbSNP
rs1050720215 1015 dbSNP
rs1408767475 1017 dbSNP
rs1309355392 1022 dbSNP
rs1394756458 1034 dbSNP
rs763270009 1048 dbSNP
rs893486342 1052 dbSNP
rs1237933846 1054 dbSNP
rs1368325882 1060 dbSNP
rs1322176258 1067 dbSNP
rs528891156 1071 dbSNP
rs1263400848 1080 dbSNP
rs180689325 1084 dbSNP
rs540317856 1097 dbSNP
rs112338181 1099 dbSNP
rs1184150597 1100 dbSNP
rs13292501 1108 dbSNP
rs1423654033 1130 dbSNP
rs1163135492 1132 dbSNP
rs1471192953 1139 dbSNP
rs563922088 1142 dbSNP
rs117924616 1145 dbSNP
rs1398971415 1149 dbSNP
rs575163657 1160 dbSNP
rs116553046 1161 dbSNP
rs1379826467 1168 dbSNP
rs984010139 1169 dbSNP
rs1227611252 1172 dbSNP
rs952008131 1179 dbSNP
rs941676792 1186 dbSNP
rs1199556098 1201 dbSNP
rs1257623956 1201 dbSNP
rs189445062 1202 dbSNP
rs573975910 1212 dbSNP
rs1027650830 1214 dbSNP
rs972113185 1216 dbSNP
rs553919396 1220 dbSNP
rs1451437972 1225 dbSNP
rs1019091982 1234 dbSNP
rs1009457975 1238 dbSNP
rs1288327505 1243 dbSNP
rs374877587 1246 dbSNP
rs534285250 1250 dbSNP
rs1207473969 1255 dbSNP
rs983778196 1258 dbSNP
rs1478335794 1261 dbSNP
rs1171032555 1266 dbSNP
rs571798380 1274 dbSNP
rs1407800998 1296 dbSNP
rs183765724 1299 dbSNP
rs1348194823 1302 dbSNP
rs1011167875 1305 dbSNP
rs538455174 1309 dbSNP
rs893474717 1311 dbSNP
rs1219006320 1313 dbSNP
rs569530486 1319 dbSNP
rs41316504 1320 dbSNP
rs1221087326 1336 dbSNP
rs529602655 1339 dbSNP
rs1441865810 1348 dbSNP
rs970810169 1350 dbSNP
rs1265970094 1352 dbSNP
rs906298798 1357 dbSNP
rs1488856276 1363 dbSNP
rs1193413051 1364 dbSNP
rs1046158988 1382 dbSNP
rs1261401588 1385 dbSNP
rs1474241759 1388 dbSNP
rs1929494 1389 dbSNP
rs1431681509 1406 dbSNP
rs1012284135 1413 dbSNP
rs916420043 1415 dbSNP
rs1425326380 1428 dbSNP
rs1413373927 1435 dbSNP
rs546311463 1438 dbSNP
rs1171756802 1447 dbSNP
rs758189146 1448 dbSNP
rs1362363113 1450 dbSNP
rs1048295467 1451 dbSNP
rs893794800 1458 dbSNP
rs1032304256 1480 dbSNP
rs931261867 1484 dbSNP
rs1200484452 1495 dbSNP
rs1324427714 1499 dbSNP
rs1477900598 1518 dbSNP
rs1000194219 1519 dbSNP
rs532840545 1520 dbSNP
rs73657945 1521 dbSNP
rs41304852 1535 dbSNP
rs765230616 1544 dbSNP
rs962086220 1545 dbSNP
rs1453666223 1548 dbSNP
rs1200595688 1560 dbSNP
rs761603242 1563 dbSNP
rs777540551 1575 dbSNP
rs1246917509 1581 dbSNP
rs1477441344 1585 dbSNP
rs1191218788 1586 dbSNP
rs1326517909 1588 dbSNP
rs911937588 1595 dbSNP
rs987582214 1598 dbSNP
rs1420262124 1601 dbSNP
rs1264601816 1603 dbSNP
rs953634391 1613 dbSNP
rs1157923871 1618 dbSNP
rs1382573716 1622 dbSNP
rs192404510 1623 dbSNP
rs1330758691 1629 dbSNP
rs575102803 1635 dbSNP
rs1311601109 1636 dbSNP
rs1272803107 1644 dbSNP
rs1377681628 1647 dbSNP
rs867297653 1656 dbSNP
rs1326914223 1672 dbSNP
rs929245993 1678 dbSNP
rs1358982354 1681 dbSNP
rs1210791581 1691 dbSNP
rs1319858352 1694 dbSNP
rs1289537863 1697 dbSNP
rs1432968531 1701 dbSNP
rs1408469073 1707 dbSNP
rs1177246406 1713 dbSNP
rs1414060382 1717 dbSNP
rs1423347702 1723 dbSNP
rs958305400 1724 dbSNP
rs143577806 1728 dbSNP
rs1177980776 1729 dbSNP
rs1361983368 1737 dbSNP
rs1169964414 1738 dbSNP
rs1030655196 1742 dbSNP
rs1389700076 1744 dbSNP
rs981270476 1746 dbSNP
rs1333595156 1751 dbSNP
rs1475968033 1753 dbSNP
rs1167548345 1762 dbSNP
rs1247925667 1763 dbSNP
rs557767681 1773 dbSNP
rs1342792824 1781 dbSNP
rs1246080998 1786 dbSNP
rs906206144 1789 dbSNP
rs916708215 1796 dbSNP
rs189405122 1800 dbSNP
rs1231126384 1809 dbSNP
rs1259554441 1813 dbSNP
rs1457868838 1816 dbSNP
rs1194749558 1818 dbSNP
rs1210224324 1822 dbSNP
rs546067945 1826 dbSNP
rs1276106733 1832 dbSNP
rs1216079175 1835 dbSNP
rs1416963454 1837 dbSNP
rs573091983 1838 dbSNP
rs1342673824 1840 dbSNP
rs573460606 1856 dbSNP
rs1032770714 1858 dbSNP
rs1432722035 1859 dbSNP
rs751330077 1861 dbSNP
rs540292374 1864 dbSNP
rs1296524464 1872 dbSNP
rs966972715 1887 dbSNP
rs1397145029 1901 dbSNP
rs1030573395 1904 dbSNP
rs931209746 1910 dbSNP
rs78173952 1912 dbSNP
rs918478015 1929 dbSNP
rs1318165819 1941 dbSNP
rs367703922 1943 dbSNP
rs1249139017 1947 dbSNP
rs1039170589 1953 dbSNP
rs558290820 1955 dbSNP
rs1036924916 1959 dbSNP
rs1484599100 1970 dbSNP
rs1195590522 1972 dbSNP
rs887513771 1975 dbSNP
rs1428171863 1982 dbSNP
rs1047874117 1983 dbSNP
rs1379496206 1984 dbSNP
rs1167105416 1986 dbSNP
rs1173633799 1987 dbSNP
rs1446912377 1995 dbSNP
rs1386435984 1998 dbSNP
rs1402327710 2008 dbSNP
rs940655051 2009 dbSNP
rs538391825 2014 dbSNP
rs569467954 2018 dbSNP
rs112854081 2019 dbSNP
rs948598413 2020 dbSNP
rs766287028 2022 dbSNP
rs1332390750 2033 dbSNP
rs922081301 2034 dbSNP
rs989671796 2037 dbSNP
rs1278913293 2041 dbSNP
rs1345642911 2042 dbSNP
rs555723387 2049 dbSNP
rs1483260667 2071 dbSNP
rs958211171 2075 dbSNP
rs536130492 2078 dbSNP
rs1225877698 2087 dbSNP
rs758322544 2090 dbSNP
rs1185038990 2100 dbSNP
rs750602186 2112 dbSNP
rs1361557783 2120 dbSNP
rs1024676031 2121 dbSNP
rs139538668 2123 dbSNP
rs1193092110 2125 dbSNP
rs894919206 2129 dbSNP
rs16920409 2130 dbSNP
rs995270048 2132 dbSNP
rs1376993737 2133 dbSNP
rs765535363 2138 dbSNP
rs1345015259 2156 dbSNP
rs1452079581 2159 dbSNP
rs112129045 2160 dbSNP
rs964963937 2163 dbSNP
rs552985811 2167 dbSNP
rs1302097549 2177 dbSNP
rs1370170824 2189 dbSNP
rs1306617542 2190 dbSNP
rs1242288557 2222 dbSNP
rs1309848501 2225 dbSNP
rs890445987 2236 dbSNP
rs1316191284 2240 dbSNP
rs532776092 2241 dbSNP
rs1426909453 2242 dbSNP
rs1051801162 2245 dbSNP
rs932040851 2247 dbSNP
rs1488947627 2255 dbSNP
rs1006373607 2261 dbSNP
rs887552151 2263 dbSNP
rs570165759 2268 dbSNP
rs989578457 2272 dbSNP
rs115352217 2280 dbSNP
rs924145167 2284 dbSNP
rs1045337849 2287 dbSNP
rs948651752 2288 dbSNP
rs1167351440 2294 dbSNP
rs1350789545 2298 dbSNP
rs1472744683 2300 dbSNP
rs1250579012 2301 dbSNP
rs894368258 2302 dbSNP
rs1054716341 2304 dbSNP
rs1298735981 2305 dbSNP
rs1372542687 2309 dbSNP
rs530562303 2310 dbSNP
rs1322080735 2316 dbSNP
rs1490765903 2320 dbSNP
rs1265975572 2324 dbSNP
rs764887830 2330 dbSNP
rs925391838 2335 dbSNP
rs1220655863 2341 dbSNP
rs761775057 2347 dbSNP
rs971032657 2350 dbSNP
rs1025041034 2351 dbSNP
rs1459188857 2361 dbSNP
rs776793096 2363 dbSNP
rs554064869 2371 dbSNP
rs761176905 2373 dbSNP
rs1232304155 2376 dbSNP
rs1479964298 2379 dbSNP
rs1229059888 2386 dbSNP
rs113356751 2393 dbSNP
rs7866144 2394 dbSNP
rs1407169286 2398 dbSNP
rs558111632 2404 dbSNP
rs995221132 2405 dbSNP
rs1163847458 2410 dbSNP
rs976059404 2414 dbSNP
rs1466810326 2416 dbSNP
rs965357588 2423 dbSNP
rs541689027 2429 dbSNP
rs1347445192 2433 dbSNP
rs1304481615 2434 dbSNP
rs1355920866 2436 dbSNP
rs1160714729 2437 dbSNP
rs528361644 2439 dbSNP
rs1291145138 2441 dbSNP
rs1243591966 2444 dbSNP
rs375608003 2450 dbSNP
rs1457276603 2451 dbSNP
rs538907376 2451 dbSNP
rs896992751 2471 dbSNP
rs12552625 2472 dbSNP
rs1305819262 2480 dbSNP
rs1008548770 2484 dbSNP
rs1238554211 2485 dbSNP
rs1485583470 2490 dbSNP
rs891069511 2509 dbSNP
rs1186273235 2514 dbSNP
rs1179500530 2519 dbSNP
rs1265710964 2523 dbSNP
rs1478610809 2525 dbSNP
rs985397759 2528 dbSNP
rs1418215711 2529 dbSNP
rs1481298959 2532 dbSNP
rs1178213973 2533 dbSNP
rs1050127587 2541 dbSNP
rs1433945116 2547 dbSNP
rs1310872477 2551 dbSNP
rs1342094034 2552 dbSNP
rs772413401 2569 dbSNP
rs1431816570 2573 dbSNP
rs1026403459 2578 dbSNP
rs184217782 2579 dbSNP
rs1487492925 2595 dbSNP
rs1360040410 2599 dbSNP
rs931941914 2602 dbSNP
rs760452245 2613 dbSNP
rs1209473136 2629 dbSNP
rs1328514438 2638 dbSNP
rs775268556 2642 dbSNP
rs900505865 2645 dbSNP
rs1488803219 2647 dbSNP
rs771489348 2649 dbSNP
rs1241140767 2652 dbSNP
rs1053869161 2656 dbSNP
rs1012565914 2658 dbSNP
rs1395115784 2660 dbSNP
rs1385427288 2661 dbSNP
rs578070809 2662 dbSNP
rs936773119 2664 dbSNP
rs1401073548 2666 dbSNP
rs1317976282 2670 dbSNP
rs1343667722 2684 dbSNP
rs1438795326 2694 dbSNP
rs1321754711 2698 dbSNP
rs1304296182 2699 dbSNP
rs1054369266 2706 dbSNP
rs1435207186 2710 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aacagguaacauagACCCCUa 5'
                        |||||| 
Target 5' -------------aUGGGGAa 3'
1 - 8
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000374847.1 | 3UTR | AUGGGGAAGGUGAAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
164 hsa-miR-2355-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT190653 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT286477 TAOK1 TAO kinase 1 2 4
MIRT318993 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT345622 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT442513 SYT7 synaptotagmin 7 2 4
MIRT444247 CTNND1 catenin delta 1 2 2
MIRT444780 ECE1 endothelin converting enzyme 1 2 2
MIRT456525 TMEM63A transmembrane protein 63A 2 2
MIRT468960 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT469834 R3HDM4 R3H domain containing 4 2 2
MIRT470027 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT471167 PHB2 prohibitin 2 2 2
MIRT475819 HDGF heparin binding growth factor 2 4
MIRT479389 CDKN1B cyclin dependent kinase inhibitor 1B 2 6
MIRT481747 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT485220 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT487259 CCNF cyclin F 2 2
MIRT489971 MCC mutated in colorectal cancers 2 4
MIRT491399 C1D C1D nuclear receptor corepressor 2 2
MIRT494959 CCDC144A coiled-coil domain containing 144A 2 4
MIRT494979 PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 2 2
MIRT495225 CHST14 carbohydrate sulfotransferase 14 2 2
MIRT496550 TBX15 T-box 15 2 2
MIRT501612 PISD phosphatidylserine decarboxylase 2 2
MIRT509393 TRIM24 tripartite motif containing 24 2 2
MIRT519616 ZNF788 zinc finger family member 788 2 4
MIRT519738 ZNF394 zinc finger protein 394 2 4
MIRT521230 SAR1A secretion associated Ras related GTPase 1A 2 4
MIRT521801 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT526233 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT526932 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT529189 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT529329 ZNF649 zinc finger protein 649 2 2
MIRT529698 MRPL30 mitochondrial ribosomal protein L30 2 2
MIRT529921 TOP1MT DNA topoisomerase I mitochondrial 2 2
MIRT530032 SMC1A structural maintenance of chromosomes 1A 2 2
MIRT530898 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT531621 TM4SF5 transmembrane 4 L six family member 5 2 4
MIRT533132 XIAP X-linked inhibitor of apoptosis 2 2
MIRT533210 WAPAL WAPL cohesin release factor 2 2
MIRT534058 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2 2
MIRT535487 PARVB parvin beta 2 2
MIRT536749 HOXD9 homeobox D9 2 2
MIRT551456 CARKD NAD(P)HX dehydratase 2 2
MIRT551858 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT552095 FAM8A1 family with sequence similarity 8 member A1 2 2
MIRT552332 ZNF704 zinc finger protein 704 2 2
MIRT552549 ZFP36L2 ZFP36 ring finger protein like 2 2 2
MIRT561505 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT562702 ZNF415 zinc finger protein 415 2 2
MIRT563052 ZNF138 zinc finger protein 138 2 2
MIRT564592 ZNF791 zinc finger protein 791 2 2
MIRT566422 PIGA phosphatidylinositol glycan anchor biosynthesis class A 2 2
MIRT570176 RCBTB1 RCC1 and BTB domain containing protein 1 2 2
MIRT570866 ZNF525 zinc finger protein 525 2 2
MIRT570875 ZFP1 ZFP1 zinc finger protein 2 2
MIRT571517 ZNF625 zinc finger protein 625 2 2
MIRT572551 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT610894 HINFP histone H4 transcription factor 2 2
MIRT611037 PTGES prostaglandin E synthase 2 2
MIRT611479 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT612419 SP1 Sp1 transcription factor 2 2
MIRT614478 FRMPD3 FERM and PDZ domain containing 3 2 2
MIRT616318 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT616929 ZNF638 zinc finger protein 638 2 2
MIRT618131 GABARAPL3 GABA type A receptor associated protein like 3 pseudogene 2 2
MIRT618452 ZFP30 ZFP30 zinc finger protein 2 4
MIRT620671 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT620713 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT621126 EMC7 ER membrane protein complex subunit 7 2 4
MIRT621443 TOMM22 translocase of outer mitochondrial membrane 22 2 2
MIRT623491 KCTD11 potassium channel tetramerization domain containing 11 2 2
MIRT623783 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT623918 FNBP1L formin binding protein 1 like 2 2
MIRT625723 CXorf38 chromosome X open reading frame 38 2 2
MIRT625778 GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 2 2
MIRT626940 TTR transthyretin 2 2
MIRT627357 TSC22D2 TSC22 domain family member 2 2 2
MIRT632078 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT633361 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT639793 MVK mevalonate kinase 2 2
MIRT643761 NAGK N-acetylglucosamine kinase 2 2
MIRT644358 NDUFAF6 NADH:ubiquinone oxidoreductase complex assembly factor 6 2 2
MIRT645558 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT646588 ANKRD36 ankyrin repeat domain 36 2 2
MIRT646631 SLC25A46 solute carrier family 25 member 46 2 2
MIRT648066 HSPA6 heat shock protein family A (Hsp70) member 6 2 2
MIRT648142 SUCLG2 succinate-CoA ligase GDP-forming beta subunit 2 2
MIRT648416 MYOZ3 myozenin 3 2 2
MIRT649218 AMMECR1L AMMECR1 like 2 2
MIRT649772 MRPS27 mitochondrial ribosomal protein S27 2 4
MIRT650510 UFM1 ubiquitin fold modifier 1 2 2
MIRT651007 ZNF740 zinc finger protein 740 2 2
MIRT651524 WNT2B Wnt family member 2B 2 2
MIRT652014 TTYH3 tweety family member 3 2 2
MIRT652513 TMEM109 transmembrane protein 109 2 2
MIRT652686 THUMPD3 THUMP domain containing 3 2 2
MIRT652772 TENM3 teneurin transmembrane protein 3 2 2
MIRT653160 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT653765 SIX5 SIX homeobox 5 2 2
MIRT653792 SIRPA signal regulatory protein alpha 2 2
MIRT655649 OAZ2 ornithine decarboxylase antizyme 2 2 2
MIRT656263 MEX3A mex-3 RNA binding family member A 2 2
MIRT657044 KCNH6 potassium voltage-gated channel subfamily H member 6 2 2
MIRT657375 HMGA1 high mobility group AT-hook 1 2 2
MIRT657532 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT657542 GSTO2 glutathione S-transferase omega 2 2 2
MIRT657828 GJD3 gap junction protein delta 3 2 2
MIRT658946 DOK6 docking protein 6 2 2
MIRT660363 BACH2 BTB domain and CNC homolog 2 2 2
MIRT660406 ATXN7L3 ataxin 7 like 3 2 2
MIRT660948 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT661031 AAK1 AP2 associated kinase 1 2 2
MIRT662435 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT668419 FAM217B family with sequence similarity 217 member B 2 2
MIRT669332 BSND barttin CLCNK type accessory beta subunit 2 2
MIRT676105 CLUAP1 clusterin associated protein 1 2 2
MIRT677084 SMIM15 small integral membrane protein 15 2 2
MIRT677127 OGFOD3 2-oxoglutarate and iron dependent oxygenase domain containing 3 2 2
MIRT678001 CPM carboxypeptidase M 2 2
MIRT678531 TMEM78 transmembrane protein 78 2 2
MIRT680000 ZNF860 zinc finger protein 860 2 2
MIRT680098 PXMP4 peroxisomal membrane protein 4 2 2
MIRT686795 SOX12 SRY-box 12 2 2
MIRT698887 SPTBN2 spectrin beta, non-erythrocytic 2 2 2
MIRT699371 SLC30A6 solute carrier family 30 member 6 2 2
MIRT702005 MIDN midnolin 2 2
MIRT708101 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 2 2
MIRT709563 GYG2 glycogenin 2 2 2
MIRT710559 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT710585 CDCA4 cell division cycle associated 4 2 2
MIRT710873 NT5DC1 5'-nucleotidase domain containing 1 2 2
MIRT711876 VASP vasodilator stimulated phosphoprotein 2 2
MIRT712226 RIMS3 regulating synaptic membrane exocytosis 3 2 2
MIRT713211 FAM13A family with sequence similarity 13 member A 2 2
MIRT713261 GPR55 G protein-coupled receptor 55 2 2
MIRT713327 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT713889 RNF19B ring finger protein 19B 2 2
MIRT714015 UBAP2L ubiquitin associated protein 2 like 2 2
MIRT714202 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT714717 VPS8 VPS8, CORVET complex subunit 2 2
MIRT714748 ZNF385D zinc finger protein 385D 2 2
MIRT714806 ARHGEF19 Rho guanine nucleotide exchange factor 19 2 2
MIRT714852 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715717 MRPL4 mitochondrial ribosomal protein L4 2 2
MIRT715852 GRIN2A glutamate ionotropic receptor NMDA type subunit 2A 2 2
MIRT716853 MFSD12 major facilitator superfamily domain containing 12 2 2
MIRT717134 EBPL emopamil binding protein like 2 2
MIRT717248 TMEM246 transmembrane protein 246 2 2
MIRT717997 ZNF79 zinc finger protein 79 2 2
MIRT718341 PURA purine rich element binding protein A 2 2
MIRT719587 TFCP2L1 transcription factor CP2 like 1 2 2
MIRT720520 PTGR2 prostaglandin reductase 2 2 2
MIRT720671 SLC39A13 solute carrier family 39 member 13 2 2
MIRT721213 DCLK3 doublecortin like kinase 3 2 2
MIRT721757 INF2 inverted formin, FH2 and WH2 domain containing 2 2
MIRT721826 POU6F1 POU class 6 homeobox 1 2 2
MIRT722091 SUSD1 sushi domain containing 1 2 2
MIRT722275 LURAP1 leucine rich adaptor protein 1 2 2
MIRT722802 ARHGAP19 Rho GTPase activating protein 19 2 2
MIRT722866 FAM212B family with sequence similarity 212 member B 2 2
MIRT723113 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT724378 NEK8 NIMA related kinase 8 2 2
MIRT732775 PYCR1 pyrroline-5-carboxylate reductase 1 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-2355 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-2355-5p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-2355-5p Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-2355-5p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-2355-5p Gefitinib 123631 NSC715055 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-2355-5p Temozolomide 5394 NSC362856 approved resistant High Glioma tissue
hsa-miR-2355-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-2355-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-2355-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-2355-5p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-2355-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (TOV-112D)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (OVSAHO)

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