pre-miRNA Information
pre-miRNA hsa-mir-412   
Genomic Coordinates chr14: 101065447 - 101065537
Synonyms MIRN412, hsa-mir-412, MIR412
Description Homo sapiens miR-412 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-412-3p
Sequence 54| ACUUCACCUGGUCCACUAGCCGU |76
Evidence Not_experimental
Experiments
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
rs61992671 18 GWAS
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs369997462 1 dbSNP
rs1439693090 7 dbSNP
rs1301668924 11 dbSNP
rs534204576 13 dbSNP
rs775386036 14 dbSNP
rs762832140 15 dbSNP
rs1203323285 16 dbSNP
rs61992671 18 dbSNP
rs1022012324 19 dbSNP
rs1207609936 20 dbSNP
rs139967426 21 dbSNP
rs539487075 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TMEM246   
Synonyms C9orf125
Description transmembrane protein 246
Transcript NM_032342   
Expression
Putative miRNA Targets on TMEM246
3'UTR of TMEM246
(miRNA target sites are highlighted)
>TMEM246|NM_032342|3'UTR
   1 GGTGCCAAGAGATGCCTTTCTGAAGTTGGCCACTTCTTGAAGATTCAAATATTTATCTCTTTATTTAGACATGGTTGCCT
  81 GCAGGTATTTCACTGTTTACTGTTGTTAGAGATATAGGCACTGGGGCAGCTGAGGAACCTCAATATGTTAAGAGCCTTGG
 161 CTTTGGTAGCCTCCTGGCAGGAGCAGCAGTTTGCCACAGGTCCGGACCTCTCCCTCCACACAGCCACACTGCCTCATGCA
 241 GTCTGACCCACCCAGTGAGGGTGCATTTGAACACTGATTATATTCTCCATTTGTTTTTAAGCTCTGCTTTGTGTTAGAGC
 321 TTGTGACTGCCAAAAATTTTGTGCACAGTGATATGACTGTTTTAGGATCTTAAGGGTAGAATTTTGTGAAAGGTGAGATC
 401 CTTTGGAATTGAGTTCTTTCTCATTGGGTATGAAAATGGATGTATGTTTAGAATATATGCCCAACGAGGCAGGACCATGT
 481 GGATAGATTCCATTTGTTTCCTTGACCTGATGTAATAAAAACTGATAAAAGCCGTGCAGTGCCCGGCATCTTGGAGGCAG
 561 GTGATCTGGCTTTTCTGTTACCTGGGATTTTCTTTTCCTATATATCTGTAGTGCACTGATAATTGATATTGTTAGTGAGA
 641 ACTTTAAGGCACGACAAGATCTGGAAGAGCTTGTGAACCATCAAAGTCAGATTGCTTATGTTGAGTAGTGATTTAACATT
 721 GAACATTTCTGTACTACTCTGACTCTTTGAAAATTGGACATTTCAGAATGATACAATATAGGGGAGCTCTTTACAAGTAG
 801 CATATCATTTTTCCTGACTTTCCTGGCTGACTGCTTACCTTCATTTCTTTTTCTTCTAGGTAGCATGATGTTATAGAAAA
 881 AAAAAAAAAAAAATCATGGACTGAAGTCAGAAGACCTGACCTTTTATTTCAGATCTCTGCCATGGCCTAACGACGTGACC
 961 ACCTTGGGCAGGTCATATAATCACTCTGGGTCTCAATTTCTTCACCTGTAAAATGAGGACAGTAATACTTACATGTTAAA
1041 GTTGCCTTGAGGATTAAATGGCAGAATATATGTAAAACACCTAGCAAGTGCTTAGTCCATAGAAGACGCTTGGCAAACTT
1121 TTCTCTCCTATAATAAACATATACAACTCAAGCTTATTTCGGAAAAAGATATTGGTGATGTTGTTTAAAGTATGAGATAG
1201 GGCATGGAGCTGCCACCTATGTACCAGCTATTCCAGATGACCAAGCCCTGCTAGAATAAAGACTGACTTTTCATTGTGAC
1281 CTCTGAAGGATGTGCAGCTCAGCTTTCACCTATCCCCACGTTCACCCAAGCCAAAAAGAAGAATTGTTCATTCAAACTGG
1361 AAATGATCTCCAGCTTGGAAATGAGACTCCTCATGAGCTTATTCTAAGATCAGAGTCTGAAAATTATTTTCTCAAAAGTT
1441 ACAAATAAATGTCTTTTAACAGTACTGTCAGACTAGTGACCAACAAGTTACTTTATGAGGATGGATGATGATATTAGAGT
1521 TCAAGCAATTGTCCAGTTTGTTTCGATGCCACAGTTTGCTTTTAAATTCCCATAGTGAGCTTCCATCTTGAGACCCACTC
1601 AACACAGAAGGATTACATAAAGGTTGATCACCCACGCTCTACAGATGAACAAATTGAGACCCAGAGATGCTAAACTGCTC
1681 TGCAGGTCACAAACCTGAACAGCAGCATAGCCAAAATGGGAACGGAGCTCTTCTGACTTCAAGCCCCTGCACTTTTTTCT
1761 TAACCACATTAATTTTATGAATATCTATGTGGTCAAAGTCTCTTTTGTAAAATCTGAGTATAAGCTGAACTAGATCATGT
1841 CTCTGTAAGCTAAGATGGCAGAAACACATTGTCATGTTAGTTTGGAGGAGCAAACAGATATAAGTATGTGTTGTAATGTT
1921 ATAGTGAGCTGTTATGTATCCCCCAGCAATGTCCAAAGTGATCAGAGCTACTAGATGACTTATTACAATGTTCAGATCCC
2001 ACTCCTTCATTCCTCCTCTCTCAGTGACCTGTCTACCCCCAAGCTTTAGAACTGAGCTCTCTCCAACTTAGAACTCATTA
2081 GAGTTTGTTGCATTAGTGATTGGATCTCCTCATGAAAGTTTTTTGACCAATGACAGTAGAGCCCCTTTAAGCTAGCCAGG
2161 CCCAAGATAGGGAAGCACTGCTGGTTTACATTTCTGCTCTTTCTAATTCAGTTGTCTATTGCATGCAGACATCCCCTGCC
2241 CGACTTCTCCATTATGGAAGGCTAAGGCCATCCTTCCTTGTCCAGTTTCTCTACCTACACACTAACATGCCTTTTCCCCA
2321 TGGAGTGAACTCTGCCAGTTGTCTTTGGACATTTTCTGCAGATGCAGGCTCAGTTCTGCTCTTTTGTTCCCACCCACTTC
2401 TAGATCTTCCTCCATTTAATCCCTTATTCTTATAAGGAGTCTAATTTTTGTGTATTGTCCTTGATTAGGGCAGCTGACAG
2481 CTTTACACCAAAGCTGAAGTCTCTCACTTAATCCTAAGCAAGGGGCTAGGGAGAACTAAGATATCCTTCCCATATCAAGG
2561 GATATAGGTTACTAGAAGGGTGGAGGTCTCTTAACAGGCTCACTCACCTTTCAGAGTTTAAATTATGGTCAGGCTTAAGA
2641 AGCTCTCTCTTGTGACTGAGTGTATTGCATAGACATGTCTGTGAAAATAAAAGCACCCATTTTGCTAAGGCTTTCTGAGA
2721 AGAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugCCGAUCACCUGGUCCACUUCa 5'
            ||:|| | ||  :||||:|| 
Target 5' taGGTTACTAGA-AGGGTGGAGg 3'
2565 - 2586 144.00 -15.10
2
miRNA  3' ugCCG-AUCACCU-GGUCCACUuca 5'
            ||| |  ||||  |||||||   
Target 5' ccGGCATCTTGGAGGCAGGTGAtct 3'
543 - 567 125.00 -19.62
3
miRNA  3' ugCCGAUCACCUGGUCCACUUCa 5'
            ||| | |||: ||| |||:| 
Target 5' taGGC-ACTGGGGCAGCTGAGGa 3'
115 - 136 124.00 -18.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN20076696 4 COSMIC
COSN31527254 9 COSMIC
COSN30476103 11 COSMIC
COSN30469681 16 COSMIC
COSN14768478 21 COSMIC
COSN30466637 22 COSMIC
COSN30510264 24 COSMIC
COSN30499197 32 COSMIC
COSN31535098 36 COSMIC
COSN30103853 37 COSMIC
COSN21350305 55 COSMIC
COSN30100665 58 COSMIC
COSN31493825 59 COSMIC
COSN30686902 70 COSMIC
COSN30161570 93 COSMIC
COSN31567642 111 COSMIC
COSN31498313 122 COSMIC
COSN31598308 156 COSMIC
COSN4884838 162 COSMIC
COSN30510326 172 COSMIC
COSN25080222 269 COSMIC
COSN20821690 320 COSMIC
COSN17489822 324 COSMIC
COSN9461346 825 COSMIC
COSN8114475 891 COSMIC
COSN18955726 1009 COSMIC
COSN8292205 1019 COSMIC
COSN9691888 1209 COSMIC
COSN21066740 2059 COSMIC
COSN20888935 2150 COSMIC
rs1929494 1389 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs146827807 2 dbSNP
rs750873062 7 dbSNP
rs1375320776 13 dbSNP
rs779493509 16 dbSNP
rs15889 21 dbSNP
rs1476029524 24 dbSNP
rs1244188270 26 dbSNP
rs367926971 32 dbSNP
rs1446609849 34 dbSNP
rs984969512 39 dbSNP
rs760884906 46 dbSNP
rs753006999 48 dbSNP
rs1227697521 51 dbSNP
rs748612601 55 dbSNP
rs1309082504 61 dbSNP
rs918916648 63 dbSNP
rs1038446498 68 dbSNP
rs941397117 71 dbSNP
rs908541826 81 dbSNP
rs983153269 82 dbSNP
rs1243856760 83 dbSNP
rs975744218 97 dbSNP
rs532086212 115 dbSNP
rs1422268535 126 dbSNP
rs1410938980 127 dbSNP
rs183328761 128 dbSNP
rs1282922649 130 dbSNP
rs1398474256 133 dbSNP
rs1463767052 143 dbSNP
rs980936680 166 dbSNP
rs1387664482 170 dbSNP
rs986291655 171 dbSNP
rs1446615633 181 dbSNP
rs967867006 183 dbSNP
rs542671645 195 dbSNP
rs781749552 198 dbSNP
rs41281043 201 dbSNP
rs1031661277 203 dbSNP
rs1002853445 204 dbSNP
rs1156255946 208 dbSNP
rs114176844 214 dbSNP
rs540012601 227 dbSNP
rs1044452461 228 dbSNP
rs1208097462 251 dbSNP
rs1243861061 253 dbSNP
rs1429517235 254 dbSNP
rs954634663 257 dbSNP
rs1013422559 271 dbSNP
rs369899000 272 dbSNP
rs747413662 280 dbSNP
rs577767389 281 dbSNP
rs1028900257 283 dbSNP
rs1178197352 284 dbSNP
rs996044086 287 dbSNP
rs1413466575 289 dbSNP
rs887944056 298 dbSNP
rs898995754 316 dbSNP
rs1037899645 318 dbSNP
rs1263670270 319 dbSNP
rs1400566291 320 dbSNP
rs111954724 334 dbSNP
rs141162447 337 dbSNP
rs1049254227 338 dbSNP
rs1277431920 351 dbSNP
rs1186896936 355 dbSNP
rs139576102 359 dbSNP
rs1005640550 366 dbSNP
rs1225084241 367 dbSNP
rs1485471752 369 dbSNP
rs929540676 376 dbSNP
rs887160199 385 dbSNP
rs537737053 391 dbSNP
rs3739726 393 dbSNP
rs1286469377 394 dbSNP
rs1324420937 397 dbSNP
rs1041037653 417 dbSNP
rs928256030 422 dbSNP
rs1231420084 424 dbSNP
rs778513715 428 dbSNP
rs1377363951 429 dbSNP
rs186020973 439 dbSNP
rs1045288800 442 dbSNP
rs910210698 445 dbSNP
rs1297547464 446 dbSNP
rs985895256 450 dbSNP
rs1358540341 451 dbSNP
rs967821982 458 dbSNP
rs915063007 460 dbSNP
rs1323975359 464 dbSNP
rs987998143 465 dbSNP
rs1363593833 466 dbSNP
rs1281472161 470 dbSNP
rs990026566 471 dbSNP
rs956546104 474 dbSNP
rs1470657785 486 dbSNP
rs1284583608 488 dbSNP
rs1362236448 501 dbSNP
rs1210886665 507 dbSNP
rs956501803 511 dbSNP
rs923668241 512 dbSNP
rs1255438657 533 dbSNP
rs1034907954 534 dbSNP
rs756923865 544 dbSNP
rs971384172 545 dbSNP
rs1023426859 548 dbSNP
rs1374451088 552 dbSNP
rs1157512562 557 dbSNP
rs1377876846 563 dbSNP
rs1012996179 564 dbSNP
rs887891761 566 dbSNP
rs996097070 568 dbSNP
rs562427859 581 dbSNP
rs542407641 596 dbSNP
rs898005543 602 dbSNP
rs112926478 603 dbSNP
rs1005098053 610 dbSNP
rs944990113 611 dbSNP
rs1246189839 622 dbSNP
rs1265349671 627 dbSNP
rs1354734508 628 dbSNP
rs1198813755 632 dbSNP
rs1259652375 633 dbSNP
rs778429329 648 dbSNP
rs1457939403 649 dbSNP
rs1177581764 652 dbSNP
rs1235853633 657 dbSNP
rs1425019624 669 dbSNP
rs1188216308 671 dbSNP
rs1367819804 675 dbSNP
rs1456254775 698 dbSNP
rs756021624 701 dbSNP
rs887221228 703 dbSNP
rs752563241 704 dbSNP
rs1465327354 714 dbSNP
rs72743370 732 dbSNP
rs1003539798 734 dbSNP
rs1396646430 736 dbSNP
rs1227111141 743 dbSNP
rs1339212011 744 dbSNP
rs1230185569 746 dbSNP
rs1279269301 747 dbSNP
rs1050542121 748 dbSNP
rs1197678013 754 dbSNP
rs1340546436 770 dbSNP
rs906548262 772 dbSNP
rs1254796947 773 dbSNP
rs1045012348 778 dbSNP
rs189442616 781 dbSNP
rs914972555 782 dbSNP
rs1477358433 791 dbSNP
rs1168850666 797 dbSNP
rs1361109493 803 dbSNP
rs1466666053 812 dbSNP
rs987904765 833 dbSNP
rs751452470 836 dbSNP
rs935120691 839 dbSNP
rs927790415 844 dbSNP
rs1400109823 851 dbSNP
rs1384445416 853 dbSNP
rs1299321802 866 dbSNP
rs1382704831 870 dbSNP
rs1332870005 872 dbSNP
rs1393819102 874 dbSNP
rs1007486242 876 dbSNP
rs1168183442 877 dbSNP
rs60771596 877 dbSNP
rs1428848016 878 dbSNP
rs1388158250 881 dbSNP
rs1165241371 883 dbSNP
rs1445103460 886 dbSNP
rs1053981643 887 dbSNP
rs1254931342 890 dbSNP
rs552039669 891 dbSNP
rs1185458050 892 dbSNP
rs879095116 893 dbSNP
rs1159857569 894 dbSNP
rs1191218256 894 dbSNP
rs1426934059 894 dbSNP
rs1433986094 894 dbSNP
rs1487877665 894 dbSNP
rs7857668 894 dbSNP
rs1434899171 895 dbSNP
rs148013361 895 dbSNP
rs982049079 895 dbSNP
rs1491029298 896 dbSNP
rs1195504823 900 dbSNP
rs969745664 902 dbSNP
rs1294320092 909 dbSNP
rs1387013593 913 dbSNP
rs560065408 915 dbSNP
rs1309970741 916 dbSNP
rs991425333 920 dbSNP
rs1043657724 926 dbSNP
rs974375467 934 dbSNP
rs1282979781 939 dbSNP
rs1214273401 943 dbSNP
rs1009430886 944 dbSNP
rs952058909 945 dbSNP
rs963342546 949 dbSNP
rs186600790 951 dbSNP
rs867062043 952 dbSNP
rs548964153 954 dbSNP
rs1019563242 955 dbSNP
rs1379701248 960 dbSNP
rs1035450147 968 dbSNP
rs1167463753 975 dbSNP
rs766662084 982 dbSNP
rs906600515 988 dbSNP
rs1292649429 999 dbSNP
rs889388755 1003 dbSNP
rs1050720215 1015 dbSNP
rs1408767475 1017 dbSNP
rs1309355392 1022 dbSNP
rs1394756458 1034 dbSNP
rs763270009 1048 dbSNP
rs893486342 1052 dbSNP
rs1237933846 1054 dbSNP
rs1368325882 1060 dbSNP
rs1322176258 1067 dbSNP
rs528891156 1071 dbSNP
rs1263400848 1080 dbSNP
rs180689325 1084 dbSNP
rs540317856 1097 dbSNP
rs112338181 1099 dbSNP
rs1184150597 1100 dbSNP
rs13292501 1108 dbSNP
rs1423654033 1130 dbSNP
rs1163135492 1132 dbSNP
rs1471192953 1139 dbSNP
rs563922088 1142 dbSNP
rs117924616 1145 dbSNP
rs1398971415 1149 dbSNP
rs575163657 1160 dbSNP
rs116553046 1161 dbSNP
rs1379826467 1168 dbSNP
rs984010139 1169 dbSNP
rs1227611252 1172 dbSNP
rs952008131 1179 dbSNP
rs941676792 1186 dbSNP
rs1199556098 1201 dbSNP
rs1257623956 1201 dbSNP
rs189445062 1202 dbSNP
rs573975910 1212 dbSNP
rs1027650830 1214 dbSNP
rs972113185 1216 dbSNP
rs553919396 1220 dbSNP
rs1451437972 1225 dbSNP
rs1019091982 1234 dbSNP
rs1009457975 1238 dbSNP
rs1288327505 1243 dbSNP
rs374877587 1246 dbSNP
rs534285250 1250 dbSNP
rs1207473969 1255 dbSNP
rs983778196 1258 dbSNP
rs1478335794 1261 dbSNP
rs1171032555 1266 dbSNP
rs571798380 1274 dbSNP
rs1407800998 1296 dbSNP
rs183765724 1299 dbSNP
rs1348194823 1302 dbSNP
rs1011167875 1305 dbSNP
rs538455174 1309 dbSNP
rs893474717 1311 dbSNP
rs1219006320 1313 dbSNP
rs569530486 1319 dbSNP
rs41316504 1320 dbSNP
rs1221087326 1336 dbSNP
rs529602655 1339 dbSNP
rs1441865810 1348 dbSNP
rs970810169 1350 dbSNP
rs1265970094 1352 dbSNP
rs906298798 1357 dbSNP
rs1488856276 1363 dbSNP
rs1193413051 1364 dbSNP
rs1046158988 1382 dbSNP
rs1261401588 1385 dbSNP
rs1474241759 1388 dbSNP
rs1929494 1389 dbSNP
rs1431681509 1406 dbSNP
rs1012284135 1413 dbSNP
rs916420043 1415 dbSNP
rs1425326380 1428 dbSNP
rs1413373927 1435 dbSNP
rs546311463 1438 dbSNP
rs1171756802 1447 dbSNP
rs758189146 1448 dbSNP
rs1362363113 1450 dbSNP
rs1048295467 1451 dbSNP
rs893794800 1458 dbSNP
rs1032304256 1480 dbSNP
rs931261867 1484 dbSNP
rs1200484452 1495 dbSNP
rs1324427714 1499 dbSNP
rs1477900598 1518 dbSNP
rs1000194219 1519 dbSNP
rs532840545 1520 dbSNP
rs73657945 1521 dbSNP
rs41304852 1535 dbSNP
rs765230616 1544 dbSNP
rs962086220 1545 dbSNP
rs1453666223 1548 dbSNP
rs1200595688 1560 dbSNP
rs761603242 1563 dbSNP
rs777540551 1575 dbSNP
rs1246917509 1581 dbSNP
rs1477441344 1585 dbSNP
rs1191218788 1586 dbSNP
rs1326517909 1588 dbSNP
rs911937588 1595 dbSNP
rs987582214 1598 dbSNP
rs1420262124 1601 dbSNP
rs1264601816 1603 dbSNP
rs953634391 1613 dbSNP
rs1157923871 1618 dbSNP
rs1382573716 1622 dbSNP
rs192404510 1623 dbSNP
rs1330758691 1629 dbSNP
rs575102803 1635 dbSNP
rs1311601109 1636 dbSNP
rs1272803107 1644 dbSNP
rs1377681628 1647 dbSNP
rs867297653 1656 dbSNP
rs1326914223 1672 dbSNP
rs929245993 1678 dbSNP
rs1358982354 1681 dbSNP
rs1210791581 1691 dbSNP
rs1319858352 1694 dbSNP
rs1289537863 1697 dbSNP
rs1432968531 1701 dbSNP
rs1408469073 1707 dbSNP
rs1177246406 1713 dbSNP
rs1414060382 1717 dbSNP
rs1423347702 1723 dbSNP
rs958305400 1724 dbSNP
rs143577806 1728 dbSNP
rs1177980776 1729 dbSNP
rs1361983368 1737 dbSNP
rs1169964414 1738 dbSNP
rs1030655196 1742 dbSNP
rs1389700076 1744 dbSNP
rs981270476 1746 dbSNP
rs1333595156 1751 dbSNP
rs1475968033 1753 dbSNP
rs1167548345 1762 dbSNP
rs1247925667 1763 dbSNP
rs557767681 1773 dbSNP
rs1342792824 1781 dbSNP
rs1246080998 1786 dbSNP
rs906206144 1789 dbSNP
rs916708215 1796 dbSNP
rs189405122 1800 dbSNP
rs1231126384 1809 dbSNP
rs1259554441 1813 dbSNP
rs1457868838 1816 dbSNP
rs1194749558 1818 dbSNP
rs1210224324 1822 dbSNP
rs546067945 1826 dbSNP
rs1276106733 1832 dbSNP
rs1216079175 1835 dbSNP
rs1416963454 1837 dbSNP
rs573091983 1838 dbSNP
rs1342673824 1840 dbSNP
rs573460606 1856 dbSNP
rs1032770714 1858 dbSNP
rs1432722035 1859 dbSNP
rs751330077 1861 dbSNP
rs540292374 1864 dbSNP
rs1296524464 1872 dbSNP
rs966972715 1887 dbSNP
rs1397145029 1901 dbSNP
rs1030573395 1904 dbSNP
rs931209746 1910 dbSNP
rs78173952 1912 dbSNP
rs918478015 1929 dbSNP
rs1318165819 1941 dbSNP
rs367703922 1943 dbSNP
rs1249139017 1947 dbSNP
rs1039170589 1953 dbSNP
rs558290820 1955 dbSNP
rs1036924916 1959 dbSNP
rs1484599100 1970 dbSNP
rs1195590522 1972 dbSNP
rs887513771 1975 dbSNP
rs1428171863 1982 dbSNP
rs1047874117 1983 dbSNP
rs1379496206 1984 dbSNP
rs1167105416 1986 dbSNP
rs1173633799 1987 dbSNP
rs1446912377 1995 dbSNP
rs1386435984 1998 dbSNP
rs1402327710 2008 dbSNP
rs940655051 2009 dbSNP
rs538391825 2014 dbSNP
rs569467954 2018 dbSNP
rs112854081 2019 dbSNP
rs948598413 2020 dbSNP
rs766287028 2022 dbSNP
rs1332390750 2033 dbSNP
rs922081301 2034 dbSNP
rs989671796 2037 dbSNP
rs1278913293 2041 dbSNP
rs1345642911 2042 dbSNP
rs555723387 2049 dbSNP
rs1483260667 2071 dbSNP
rs958211171 2075 dbSNP
rs536130492 2078 dbSNP
rs1225877698 2087 dbSNP
rs758322544 2090 dbSNP
rs1185038990 2100 dbSNP
rs750602186 2112 dbSNP
rs1361557783 2120 dbSNP
rs1024676031 2121 dbSNP
rs139538668 2123 dbSNP
rs1193092110 2125 dbSNP
rs894919206 2129 dbSNP
rs16920409 2130 dbSNP
rs995270048 2132 dbSNP
rs1376993737 2133 dbSNP
rs765535363 2138 dbSNP
rs1345015259 2156 dbSNP
rs1452079581 2159 dbSNP
rs112129045 2160 dbSNP
rs964963937 2163 dbSNP
rs552985811 2167 dbSNP
rs1302097549 2177 dbSNP
rs1370170824 2189 dbSNP
rs1306617542 2190 dbSNP
rs1242288557 2222 dbSNP
rs1309848501 2225 dbSNP
rs890445987 2236 dbSNP
rs1316191284 2240 dbSNP
rs532776092 2241 dbSNP
rs1426909453 2242 dbSNP
rs1051801162 2245 dbSNP
rs932040851 2247 dbSNP
rs1488947627 2255 dbSNP
rs1006373607 2261 dbSNP
rs887552151 2263 dbSNP
rs570165759 2268 dbSNP
rs989578457 2272 dbSNP
rs115352217 2280 dbSNP
rs924145167 2284 dbSNP
rs1045337849 2287 dbSNP
rs948651752 2288 dbSNP
rs1167351440 2294 dbSNP
rs1350789545 2298 dbSNP
rs1472744683 2300 dbSNP
rs1250579012 2301 dbSNP
rs894368258 2302 dbSNP
rs1054716341 2304 dbSNP
rs1298735981 2305 dbSNP
rs1372542687 2309 dbSNP
rs530562303 2310 dbSNP
rs1322080735 2316 dbSNP
rs1490765903 2320 dbSNP
rs1265975572 2324 dbSNP
rs764887830 2330 dbSNP
rs925391838 2335 dbSNP
rs1220655863 2341 dbSNP
rs761775057 2347 dbSNP
rs971032657 2350 dbSNP
rs1025041034 2351 dbSNP
rs1459188857 2361 dbSNP
rs776793096 2363 dbSNP
rs554064869 2371 dbSNP
rs761176905 2373 dbSNP
rs1232304155 2376 dbSNP
rs1479964298 2379 dbSNP
rs1229059888 2386 dbSNP
rs113356751 2393 dbSNP
rs7866144 2394 dbSNP
rs1407169286 2398 dbSNP
rs558111632 2404 dbSNP
rs995221132 2405 dbSNP
rs1163847458 2410 dbSNP
rs976059404 2414 dbSNP
rs1466810326 2416 dbSNP
rs965357588 2423 dbSNP
rs541689027 2429 dbSNP
rs1347445192 2433 dbSNP
rs1304481615 2434 dbSNP
rs1355920866 2436 dbSNP
rs1160714729 2437 dbSNP
rs528361644 2439 dbSNP
rs1291145138 2441 dbSNP
rs1243591966 2444 dbSNP
rs375608003 2450 dbSNP
rs1457276603 2451 dbSNP
rs538907376 2451 dbSNP
rs896992751 2471 dbSNP
rs12552625 2472 dbSNP
rs1305819262 2480 dbSNP
rs1008548770 2484 dbSNP
rs1238554211 2485 dbSNP
rs1485583470 2490 dbSNP
rs891069511 2509 dbSNP
rs1186273235 2514 dbSNP
rs1179500530 2519 dbSNP
rs1265710964 2523 dbSNP
rs1478610809 2525 dbSNP
rs985397759 2528 dbSNP
rs1418215711 2529 dbSNP
rs1481298959 2532 dbSNP
rs1178213973 2533 dbSNP
rs1050127587 2541 dbSNP
rs1433945116 2547 dbSNP
rs1310872477 2551 dbSNP
rs1342094034 2552 dbSNP
rs772413401 2569 dbSNP
rs1431816570 2573 dbSNP
rs1026403459 2578 dbSNP
rs184217782 2579 dbSNP
rs1487492925 2595 dbSNP
rs1360040410 2599 dbSNP
rs931941914 2602 dbSNP
rs760452245 2613 dbSNP
rs1209473136 2629 dbSNP
rs1328514438 2638 dbSNP
rs775268556 2642 dbSNP
rs900505865 2645 dbSNP
rs1488803219 2647 dbSNP
rs771489348 2649 dbSNP
rs1241140767 2652 dbSNP
rs1053869161 2656 dbSNP
rs1012565914 2658 dbSNP
rs1395115784 2660 dbSNP
rs1385427288 2661 dbSNP
rs578070809 2662 dbSNP
rs936773119 2664 dbSNP
rs1401073548 2666 dbSNP
rs1317976282 2670 dbSNP
rs1343667722 2684 dbSNP
rs1438795326 2694 dbSNP
rs1321754711 2698 dbSNP
rs1304296182 2699 dbSNP
rs1054369266 2706 dbSNP
rs1435207186 2710 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugccgaucACCUGGUCCACUUCa 5'
                  |||:  |||||||| 
Target 5' -------aUGGGGAAGGUGAAGu 3'
1 - 16
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000374847.1 | 3UTR | AUGGGGAAGGUGAAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
138 hsa-miR-412-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT005780 ACVR1C activin A receptor type 1C 1 1
MIRT062013 YOD1 YOD1 deubiquitinase 2 2
MIRT345112 ATXN7L3 ataxin 7 like 3 2 2
MIRT383735 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 2
MIRT396956 CELF1 CUGBP Elav-like family member 1 2 2
MIRT439280 XIAP X-linked inhibitor of apoptosis 1 1
MIRT439313 VAT1 vesicle amine transport 1 1 1
MIRT439375 TUBA1A tubulin alpha 1a 1 1
MIRT439418 TMOD1 tropomodulin 1 1 1
MIRT439503 SURF4 surfeit 4 1 1
MIRT439563 SON SON DNA binding protein 1 1
MIRT439598 SLC3A2 solute carrier family 3 member 2 1 1
MIRT439670 SETD1B SET domain containing 1B 1 1
MIRT439767 RMND5A required for meiotic nuclear division 5 homolog A 1 1
MIRT439922 PPL periplakin 1 1
MIRT439947 PLEKHA6 pleckstrin homology domain containing A6 1 1
MIRT439952 PLCB4 phospholipase C beta 4 1 1
MIRT439961 PKD1 polycystin 1, transient receptor potential channel interacting 1 1
MIRT440005 PEG3 paternally expressed 3 1 1
MIRT440061 OSBPL8 oxysterol binding protein like 8 1 1
MIRT440166 MYH14 myosin heavy chain 14 1 1
MIRT440276 MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 1 1
MIRT440437 IPO13 importin 13 1 1
MIRT440441 INTS3 integrator complex subunit 3 1 1
MIRT440448 INS insulin 1 1
MIRT440461 IGF2R insulin like growth factor 2 receptor 1 1
MIRT440472 IARS isoleucyl-tRNA synthetase 1 1
MIRT440530 GUCY1A3 guanylate cyclase 1 soluble subunit alpha 1 1
MIRT440542 GOLGA2 golgin A2 1 1
MIRT440569 GIGYF1 GRB10 interacting GYF protein 1 1 1
MIRT440608 FTSJD2 cap methyltransferase 1 1 1
MIRT440750 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 1 1
MIRT440781 DOT1L DOT1 like histone lysine methyltransferase 1 1
MIRT440804 DNAJA4 DnaJ heat shock protein family (Hsp40) member A4 1 1
MIRT440867 CSDE1 cold shock domain containing E1 1 1
MIRT440890 CPEB4 cytoplasmic polyadenylation element binding protein 4 1 1
MIRT440917 COL1A1 collagen type I alpha 1 chain 1 1
MIRT440967 CDH22 cadherin 22 1 1
MIRT440968 CDH2 cadherin 2 1 1
MIRT441024 CALR calreticulin 1 1
MIRT441278 ACTB actin beta 1 1
MIRT448421 TNFAIP3 TNF alpha induced protein 3 2 2
MIRT462833 BCL3 B-cell CLL/lymphoma 3 2 2
MIRT465062 TSR1 TSR1, ribosome maturation factor 2 2
MIRT476050 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT485318 MZT1 mitotic spindle organizing protein 1 2 4
MIRT493584 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 6
MIRT494567 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497393 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT503250 ZNF257 zinc finger protein 257 2 10
MIRT503656 ZNF138 zinc finger protein 138 2 10
MIRT505882 RNF219 ring finger protein 219 2 2
MIRT507525 DSTN destrin, actin depolymerizing factor 2 4
MIRT510663 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT514682 ZNF701 zinc finger protein 701 2 4
MIRT515370 ZNF208 zinc finger protein 208 2 6
MIRT525237 KCNJ12 potassium voltage-gated channel subfamily J member 12 2 2
MIRT527963 MTAP methylthioadenosine phosphorylase 2 2
MIRT528482 STAMBPL1 STAM binding protein like 1 2 2
MIRT529909 C1orf64 steroid receptor associated and regulated protein 2 4
MIRT531558 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT532234 KLF2 Kruppel like factor 2 2 4
MIRT532480 HOXA13 homeobox A13 2 2
MIRT535544 P2RY2 purinergic receptor P2Y2 2 2
MIRT547311 NR1D2 nuclear receptor subfamily 1 group D member 2 2 2
MIRT551795 ZNF117 zinc finger protein 117 2 4
MIRT554939 RAP1A RAP1A, member of RAS oncogene family 2 2
MIRT558171 EIF5A2 eukaryotic translation initiation factor 5A2 2 2
MIRT568771 LY6K lymphocyte antigen 6 family member K 2 2
MIRT570766 ZNF99 zinc finger protein 99 2 2
MIRT572405 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT573396 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT610403 RXRB retinoid X receptor beta 2 2
MIRT610886 SCN8A sodium voltage-gated channel alpha subunit 8 2 2
MIRT611197 TMEM105 transmembrane protein 105 2 2
MIRT611244 ZNF550 zinc finger protein 550 2 2
MIRT615669 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 4
MIRT617974 DOCK4 dedicator of cytokinesis 4 2 2
MIRT619150 ZNF326 zinc finger protein 326 2 2
MIRT619608 MKKS McKusick-Kaufman syndrome 2 2
MIRT621053 DGKD diacylglycerol kinase delta 2 2
MIRT623665 HRK harakiri, BCL2 interacting protein 2 2
MIRT624883 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT624939 MARCH2 membrane associated ring-CH-type finger 2 2 2
MIRT634198 TMOD2 tropomodulin 2 2 4
MIRT636727 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT637741 POLR3K RNA polymerase III subunit K 2 2
MIRT638002 ZC3H13 zinc finger CCCH-type containing 13 2 2
MIRT640395 ZNF785 zinc finger protein 785 2 2
MIRT640505 ANTXR1 anthrax toxin receptor 1 2 2
MIRT641293 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT641863 STOML1 stomatin like 1 2 2
MIRT642600 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT642895 CASP1 caspase 1 2 2
MIRT643967 FHL2 four and a half LIM domains 2 2 4
MIRT645237 KCTD12 potassium channel tetramerization domain containing 12 2 2
MIRT646621 CENPL centromere protein L 2 2
MIRT648620 CYB561A3 cytochrome b561 family member A3 2 2
MIRT648908 ZNF551 zinc finger protein 551 2 2
MIRT649439 HIBADH 3-hydroxyisobutyrate dehydrogenase 2 2
MIRT650637 LTF lactotransferrin 2 2
MIRT650971 STARD3NL STARD3 N-terminal like 2 2
MIRT651067 ZNF518B zinc finger protein 518B 2 4
MIRT652384 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT653958 SEPN1 selenoprotein N 2 2
MIRT656885 KIF1C kinesin family member 1C 2 2
MIRT657965 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT658080 FOXR2 forkhead box R2 2 2
MIRT662570 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT663089 METTL10 EEF1A lysine methyltransferase 2 2 2
MIRT683705 ZNF195 zinc finger protein 195 2 2
MIRT683835 ZNF682 zinc finger protein 682 2 2
MIRT706811 APOL4 apolipoprotein L4 2 2
MIRT707575 DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 2 2
MIRT708606 ZNF260 zinc finger protein 260 2 2
MIRT708859 TMSB4X thymosin beta 4, X-linked 2 2
MIRT709861 PDIK1L PDLIM1 interacting kinase 1 like 2 2
MIRT709987 RBM41 RNA binding motif protein 41 2 2
MIRT710098 KPNA5 karyopherin subunit alpha 5 2 2
MIRT710211 ENAH ENAH, actin regulator 2 2
MIRT710868 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 2 2
MIRT710986 SUSD5 sushi domain containing 5 2 2
MIRT711460 RNF145 ring finger protein 145 2 2
MIRT712302 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT713609 SYTL4 synaptotagmin like 4 2 2
MIRT713789 MAK16 MAK16 homolog 2 2
MIRT715480 MYO9B myosin IXB 2 2
MIRT716328 POU5F1 POU class 5 homeobox 1 2 2
MIRT717252 TMEM246 transmembrane protein 246 2 2
MIRT718077 CLIC5 chloride intracellular channel 5 2 2
MIRT718463 EED embryonic ectoderm development 2 2
MIRT718645 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT718982 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT721078 RPS9 ribosomal protein S9 2 2
MIRT721419 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT721863 CENPJ centromere protein J 2 2
MIRT722492 PNKD paroxysmal nonkinesigenic dyskinesia 2 2
MIRT723391 CALN1 calneuron 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-412 Gemcitabine approved 60750 Northern blot Mz-ChA-1 human cholangiocarcinoma cell lines 16762633 2006 down-regulated
miR-412 Progesterone approved 5994 Microarray Breast cancer 22330642 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-412 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-412 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-412-3p Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (RKO)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (HCT-116)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved sensitive High Anaplastic Thyroid Cancer tissue
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM47)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM43)
hsa-miR-412-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-412-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-412-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR1)
hsa-miR-412-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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