pre-miRNA Information
pre-miRNA hsa-mir-6509   
Genomic Coordinates chr7: 135206994 - 135207078
Description Homo sapiens miR-6509 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6509-3p
Sequence 52| UUCCACUGCCACUACCUAAUUU |73
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs778601614 1 dbSNP
rs754554776 3 dbSNP
rs767798995 3 dbSNP
rs145322812 4 dbSNP
rs773941257 5 dbSNP
rs768273593 9 dbSNP
rs984565062 12 dbSNP
rs748872915 13 dbSNP
rs774861125 14 dbSNP
rs13241975 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PGK1   
Synonyms HEL-S-68p, MIG10, PGKA
Description phosphoglycerate kinase 1
Transcript NM_000291   
Expression
Putative miRNA Targets on PGK1
3'UTR of PGK1
(miRNA target sites are highlighted)
>PGK1|NM_000291|3'UTR
   1 TACTTTCCTGCCTTTTAGTTCCTGTGCACAGCCCCTAAGTCAACTTAGCATTTTCTGCATCTCCACTTGGCATTAGCTAA
  81 AACCTTCCATGTCAAGATTCAGCTAGTGGCCAAGAGATGCAGTGCCAGGAACCCTTAAACAGTTGCACAGCATCTCAGCT
 161 CATCTTCACTGCACCCTGGATTTGCATACATTCTTCAAGATCCCATTTGAATTTTTTAGTGACTAAACCATTGTGCATTC
 241 TAGAGTGCATATATTTATATTTTGCCTGTTAAAAAGAAAGTGAGCAGTGTTAGCTTAGTTCTCTTTTGATGTAGGTTATT
 321 ATGATTAGCTTTGTCACTGTTTCACTACTCAGCATGGAAACAAGATGAAATTCCATTTGTAGGTAGTGAGACAAAATTGA
 401 TGATCCATTAAGTAAACAATAAAAGTGTCCATTGAAACCGTGATTTTTTTTTTTTTCCTGTCATACTTTGTTAGGAAGGG
 481 TGAGAATAGAATCTTGAGGAACGGATCAGATGTCTATATTGCTGAATGCAAGAAGTGGGGCAGCAGCAGTGGAGAGATGG
 561 GACAATTAGATAAATGTCCATTCTTTATCAAGGGCCTACTTTATGGCAGACATTGTGCTAGTGCTTTTATTCTAACTTTT
 641 ATTTTTATCAGTTACACATGATCATAATTTAAAAAGTCAAGGCTTATAACAAAAAAGCCCCAGCCCATTCCTCCCATTCA
 721 AGATTCCCACTCCCCAGAGGTGACCACTTTCAACTCTTGAGTTTTTCAGGTATATACCTCCATGTTTCTAAGTAATATGC
 801 TTATATTGTTCACTTCTTTTTTTTTTATTTTTTAAAGAAATCTATTTCATACCATGGAGGAAGGCTCTGTTCCACATATA
 881 TTTCCACTTCTTCATTCTCTCGGTATAGTTTTGTCACAATTATAGATTAGATCAAAAGTCTACATAACTAATACAGCTGA
 961 GCTATGTAGTATGCTATGATTAAATTTACTTATGTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuUAAUCCAUCACCGUCACCUu 5'
            :| :|| ||  |||||||| 
Target 5' aaGTGGGGCAGCAGCAGTGGAg 3'
533 - 554 160.00 -18.80
2
miRNA  3' uuuaaUCCAUCAC-CGUCACcuu 5'
               ||  |||| ||||||   
Target 5' taaaaAGAAAGTGAGCAGTGtta 3'
270 - 292 121.00 -12.62
3
miRNA  3' uuUAA-UCCAUCAC----------CGUCACcuu 5'
            ||| || |||||          ||||||   
Target 5' agATTCAGCTAGTGGCCAAGAGATGCAGTGcca 3'
95 - 127 118.00 -11.42
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs782477517 2 dbSNP
rs782604413 3 dbSNP
rs781848681 8 dbSNP
rs201597074 12 dbSNP
rs1269671120 13 dbSNP
rs911827155 18 dbSNP
rs782657991 22 dbSNP
rs781855321 23 dbSNP
rs944606786 30 dbSNP
rs192518940 36 dbSNP
rs782305608 39 dbSNP
rs373973773 40 dbSNP
rs1379820239 42 dbSNP
rs1283475712 44 dbSNP
rs1452059208 57 dbSNP
rs900325469 83 dbSNP
rs1380650904 86 dbSNP
rs946524569 89 dbSNP
rs1322873145 98 dbSNP
rs1457963230 107 dbSNP
rs1344766310 108 dbSNP
rs1043866940 109 dbSNP
rs1407387280 115 dbSNP
rs1415200411 116 dbSNP
rs902225457 128 dbSNP
rs781942448 134 dbSNP
rs1034663223 138 dbSNP
rs1442289213 161 dbSNP
rs896094698 162 dbSNP
rs1249325673 163 dbSNP
rs782304115 168 dbSNP
rs1464164539 173 dbSNP
rs1014504385 174 dbSNP
rs782280263 184 dbSNP
rs1223521490 185 dbSNP
rs970628609 187 dbSNP
rs973557946 191 dbSNP
rs782237273 196 dbSNP
rs1243666102 200 dbSNP
rs1357460238 203 dbSNP
rs1299927969 206 dbSNP
rs782362238 212 dbSNP
rs1028162313 216 dbSNP
rs1361557854 231 dbSNP
rs1287297396 241 dbSNP
rs185867522 245 dbSNP
rs782079469 247 dbSNP
rs1423282863 254 dbSNP
rs1392498338 257 dbSNP
rs1168689504 259 dbSNP
rs1427359131 265 dbSNP
rs1259271024 266 dbSNP
rs782741250 271 dbSNP
rs1192549418 274 dbSNP
rs371436001 275 dbSNP
rs781919800 275 dbSNP
rs1245911024 279 dbSNP
rs1219895613 282 dbSNP
rs782064912 286 dbSNP
rs911879476 287 dbSNP
rs187560233 290 dbSNP
rs781899997 310 dbSNP
rs369088358 314 dbSNP
rs1306965159 316 dbSNP
rs782147238 316 dbSNP
rs1221138186 322 dbSNP
rs921829706 334 dbSNP
rs782515029 337 dbSNP
rs946548349 343 dbSNP
rs1043536483 355 dbSNP
rs35437581 365 dbSNP
rs902281322 388 dbSNP
rs782770358 400 dbSNP
rs1372970273 405 dbSNP
rs935051136 416 dbSNP
rs1309124736 421 dbSNP
rs1461089481 440 dbSNP
rs1056174087 441 dbSNP
rs1428096754 444 dbSNP
rs375714288 444 dbSNP
rs879972064 444 dbSNP
rs896148426 445 dbSNP
rs1014555127 451 dbSNP
rs1252506092 457 dbSNP
rs1483893495 457 dbSNP
rs1195131064 458 dbSNP
rs1480379700 459 dbSNP
rs1249682427 461 dbSNP
rs1212245532 467 dbSNP
rs1023641319 470 dbSNP
rs906081999 490 dbSNP
rs1282827898 496 dbSNP
rs1222098966 497 dbSNP
rs531937161 503 dbSNP
rs781826769 504 dbSNP
rs1289591111 508 dbSNP
rs1391317378 512 dbSNP
rs995427711 517 dbSNP
rs1304095079 519 dbSNP
rs1027803859 528 dbSNP
rs950831275 533 dbSNP
rs1466063139 555 dbSNP
rs1404942843 557 dbSNP
rs1173780269 558 dbSNP
rs1473480997 559 dbSNP
rs1412415265 566 dbSNP
rs543980672 568 dbSNP
rs1181076240 574 dbSNP
rs550490336 597 dbSNP
rs1258107394 599 dbSNP
rs1461794896 612 dbSNP
rs782004440 614 dbSNP
rs1201995155 619 dbSNP
rs782575510 622 dbSNP
rs1018940755 627 dbSNP
rs966018614 629 dbSNP
rs782781114 632 dbSNP
rs1238711074 637 dbSNP
rs1334537677 651 dbSNP
rs192787948 657 dbSNP
rs921856853 664 dbSNP
rs1381378254 668 dbSNP
rs967965749 671 dbSNP
rs1458480922 683 dbSNP
rs1388827044 688 dbSNP
rs1157792372 701 dbSNP
rs782535482 702 dbSNP
rs1451293899 708 dbSNP
rs1370152969 736 dbSNP
rs1165356988 737 dbSNP
rs1445365592 751 dbSNP
rs1242604968 754 dbSNP
rs1181760050 757 dbSNP
rs1466434737 779 dbSNP
rs1262637204 813 dbSNP
rs1204951685 814 dbSNP
rs1247337392 817 dbSNP
rs1348947805 817 dbSNP
rs979700275 817 dbSNP
rs923786582 825 dbSNP
rs1136457 828 dbSNP
rs782635306 829 dbSNP
rs1312278120 834 dbSNP
rs1436571029 845 dbSNP
rs1365495650 861 dbSNP
rs1317145623 868 dbSNP
rs1380352489 887 dbSNP
rs1392589632 888 dbSNP
rs1163837311 896 dbSNP
rs1423936907 898 dbSNP
rs1383242069 902 dbSNP
rs1451369574 918 dbSNP
rs782248779 923 dbSNP
rs935104982 924 dbSNP
rs1192722028 940 dbSNP
rs1445698993 944 dbSNP
rs1269903486 945 dbSNP
rs1223595394 949 dbSNP
rs1490332738 949 dbSNP
rs16657 953 dbSNP
rs199863795 953 dbSNP
rs536539659 953 dbSNP
rs1056225508 955 dbSNP
rs917634145 960 dbSNP
rs1269280338 963 dbSNP
rs1224773459 965 dbSNP
rs184668156 977 dbSNP
rs1303550187 982 dbSNP
rs1404059218 993 dbSNP
rs1363674403 994 dbSNP
rs1431760965 1000 dbSNP
rs1397288337 1002 dbSNP
rs1167629380 1028 dbSNP
rs1044707958 1042 dbSNP
rs1474549567 1067 dbSNP
rs782147472 1082 dbSNP
rs188642051 1084 dbSNP
rs1200624374 1088 dbSNP
rs1480290036 1096 dbSNP
rs995086425 1106 dbSNP
rs1049728550 1117 dbSNP
rs1267427732 1120 dbSNP
rs1207891619 1121 dbSNP
rs782420536 1136 dbSNP
rs1271685361 1180 dbSNP
rs1193512989 1186 dbSNP
rs1004965396 1188 dbSNP
rs562313895 1190 dbSNP
rs1346713350 1207 dbSNP
rs1018992698 1212 dbSNP
rs1222715443 1213 dbSNP
rs966069231 1214 dbSNP
rs996597284 1226 dbSNP
rs1442836969 1231 dbSNP
rs1353783977 1240 dbSNP
rs781919079 1245 dbSNP
rs1328282307 1252 dbSNP
rs868962885 1267 dbSNP
rs1404655957 1270 dbSNP
rs1408226613 1270 dbSNP
rs1177377160 1278 dbSNP
rs1469654270 1285 dbSNP
rs1427622152 1286 dbSNP
rs1185057542 1298 dbSNP
rs1470806387 1307 dbSNP
rs1232760622 1317 dbSNP
rs181421254 1324 dbSNP
rs782017879 1327 dbSNP
rs1179089309 1335 dbSNP
rs1443612681 1339 dbSNP
rs1263427964 1348 dbSNP
rs1202629988 1354 dbSNP
rs1321245040 1358 dbSNP
rs782163964 1359 dbSNP
rs1269796232 1369 dbSNP
rs1224071223 1376 dbSNP
rs1028978079 1380 dbSNP
rs1277657258 1403 dbSNP
rs968399765 1406 dbSNP
rs1385052272 1422 dbSNP
rs1337706711 1430 dbSNP
rs782755835 1439 dbSNP
rs1452184518 1448 dbSNP
rs1404095803 1460 dbSNP
rs1161764578 1472 dbSNP
rs1401610351 1475 dbSNP
rs1407947010 1480 dbSNP
rs1157319997 1481 dbSNP
rs1473528582 1490 dbSNP
rs1243217867 1492 dbSNP
rs782070187 1504 dbSNP
rs1459708170 1509 dbSNP
rs1249446074 1511 dbSNP
rs923811692 1513 dbSNP
rs956528537 1516 dbSNP
rs782432849 1541 dbSNP
rs991958405 1548 dbSNP
rs917686537 1552 dbSNP
rs1316083590 1554 dbSNP
rs1282122247 1558 dbSNP
rs947763758 1562 dbSNP
rs1045157347 1567 dbSNP
rs1361765591 1577 dbSNP
rs1315825951 1585 dbSNP
rs184370842 1586 dbSNP
rs1380896847 1590 dbSNP
rs1290822819 1604 dbSNP
rs930929489 1606 dbSNP
rs782083785 1612 dbSNP
rs782763127 1617 dbSNP
rs886656313 1621 dbSNP
rs1427120411 1628 dbSNP
rs781799318 1637 dbSNP
rs1005017882 1639 dbSNP
rs782461382 1642 dbSNP
rs2643580 1646 dbSNP
rs782114180 1653 dbSNP
rs1485453804 1666 dbSNP
rs1240138342 1676 dbSNP
rs1223410550 1680 dbSNP
rs1490497152 1687 dbSNP
rs1290896324 1692 dbSNP
rs1357345763 1694 dbSNP
rs996264671 1698 dbSNP
rs1215374910 1705 dbSNP
rs782775105 1708 dbSNP
rs1268797539 1714 dbSNP
rs1407099706 1717 dbSNP
rs1366773825 1718 dbSNP
rs781911293 1729 dbSNP
rs1422268936 1733 dbSNP
rs1355762447 1750 dbSNP
rs782523280 1751 dbSNP
rs189149929 1769 dbSNP
rs1201357265 1771 dbSNP
rs1480622592 1778 dbSNP
rs968076041 1779 dbSNP
rs1220138590 1786 dbSNP
rs782585476 1790 dbSNP
rs1253149343 1794 dbSNP
rs182096854 1801 dbSNP
rs782426961 1801 dbSNP
rs1293655489 1806 dbSNP
rs1225782919 1812 dbSNP
rs1030931118 1816 dbSNP
rs1346520088 1818 dbSNP
rs1283275702 1821 dbSNP
rs1403635179 1830 dbSNP
rs1376082986 1846 dbSNP
rs1298265620 1860 dbSNP
rs781879693 1896 dbSNP
rs1461000209 1898 dbSNP
rs782584178 1899 dbSNP
rs1352441803 1900 dbSNP
rs956581788 1905 dbSNP
rs1428328204 1908 dbSNP
rs1470177043 1908 dbSNP
rs2132226 1910 dbSNP
rs1420816933 1913 dbSNP
rs1251088471 1921 dbSNP
rs1024799114 1922 dbSNP
rs1177888592 1924 dbSNP
rs1256459119 1926 dbSNP
rs1205795726 1942 dbSNP
rs969577099 1946 dbSNP
rs1262916859 1959 dbSNP
rs1222006377 1963 dbSNP
rs187610571 1971 dbSNP
rs1319276485 1972 dbSNP
rs1308299552 1989 dbSNP
rs1390365269 1992 dbSNP
rs980543383 2003 dbSNP
rs1370522410 2006 dbSNP
rs1338370958 2007 dbSNP
rs1452921109 2008 dbSNP
rs782419233 2020 dbSNP
rs782552303 2022 dbSNP
rs931000136 2049 dbSNP
rs982824520 2057 dbSNP
rs1455113438 2070 dbSNP
rs781879586 2071 dbSNP
rs190689814 2072 dbSNP
rs782259418 2075 dbSNP
rs1236431548 2077 dbSNP
rs180989026 2082 dbSNP
rs185566811 2089 dbSNP
rs1461951378 2107 dbSNP
rs1242709625 2134 dbSNP
rs902013673 2137 dbSNP
rs781797431 2145 dbSNP
rs190271806 2147 dbSNP
rs932101078 2150 dbSNP
rs1238952559 2151 dbSNP
rs1315581353 2165 dbSNP
rs1316547756 2169 dbSNP
rs1050538002 2175 dbSNP
rs1246005838 2195 dbSNP
rs1381620142 2198 dbSNP
rs782328149 2212 dbSNP
rs373552760 2215 dbSNP
rs1385386866 2216 dbSNP
rs1288287871 2219 dbSNP
rs903902984 2227 dbSNP
rs1000886642 2239 dbSNP
rs1451552966 2247 dbSNP
rs1386953739 2255 dbSNP
rs1445272966 2259 dbSNP
rs1384901568 2286 dbSNP
rs1185672784 2289 dbSNP
rs782025692 2291 dbSNP
rs143899123 2297 dbSNP
rs182851482 2299 dbSNP
rs1487605452 2315 dbSNP
rs187501919 2320 dbSNP
rs1294531290 2321 dbSNP
rs781816776 2325 dbSNP
rs1358083673 2330 dbSNP
rs1282131511 2339 dbSNP
rs782089833 2343 dbSNP
rs1024852916 2352 dbSNP
rs969251801 2355 dbSNP
rs1326586241 2364 dbSNP
rs1294603430 2366 dbSNP
rs1380264813 2368 dbSNP
rs190787323 2390 dbSNP
rs1303655704 2393 dbSNP
rs980980246 2394 dbSNP
rs568505506 2399 dbSNP
rs1425444401 2410 dbSNP
rs952544156 2413 dbSNP
rs1161466092 2418 dbSNP
rs982435172 2429 dbSNP
rs782542314 2438 dbSNP
rs1192954334 2439 dbSNP
rs1477026438 2443 dbSNP
rs3180831 2461 dbSNP
rs940982589 2462 dbSNP
rs1200770025 2482 dbSNP
rs2935001 2483 dbSNP
rs5959133 2487 dbSNP
rs1196973754 2488 dbSNP
rs1339686401 2534 dbSNP
rs1250374199 2539 dbSNP
rs377433453 2542 dbSNP
rs1347146754 2550 dbSNP
rs1283923005 2553 dbSNP
rs1404260662 2558 dbSNP
rs1329217083 2563 dbSNP
rs932180107 2570 dbSNP
rs782522201 2575 dbSNP
rs1397526808 2582 dbSNP
rs782603625 2583 dbSNP
rs1464448818 2585 dbSNP
rs1431903885 2593 dbSNP
rs782230984 2597 dbSNP
rs1480405665 2609 dbSNP
rs1245440027 2611 dbSNP
rs1183398215 2613 dbSNP
rs1437875393 2615 dbSNP
rs782309010 2615 dbSNP
rs189176284 2619 dbSNP
rs1325162139 2637 dbSNP
rs1263541934 2640 dbSNP
rs782409970 2641 dbSNP
rs936734595 2643 dbSNP
rs1342818612 2668 dbSNP
rs1281176831 2672 dbSNP
rs1444513603 2673 dbSNP
rs1336417408 2675 dbSNP
rs1331014459 2681 dbSNP
rs1444849526 2689 dbSNP
rs1052468336 2691 dbSNP
rs1408502587 2695 dbSNP
rs1177631584 2697 dbSNP
rs1469577406 2699 dbSNP
rs892468354 2704 dbSNP
rs1160775953 2706 dbSNP
rs1013552548 2715 dbSNP
rs782599106 2717 dbSNP
rs1362712323 2718 dbSNP
rs1176168986 2720 dbSNP
rs1462393342 2721 dbSNP
rs371930168 2726 dbSNP
rs1202839321 2733 dbSNP
rs1440455039 2734 dbSNP
rs1286325739 2740 dbSNP
rs192221990 2748 dbSNP
rs1349789911 2750 dbSNP
rs781995776 2750 dbSNP
rs1308644896 2755 dbSNP
rs782692505 2769 dbSNP
rs1237995313 2776 dbSNP
rs782178649 2778 dbSNP
rs1337603767 2784 dbSNP
rs1002059632 2805 dbSNP
rs77825030 2810 dbSNP
rs1027213450 2816 dbSNP
rs1357772872 2817 dbSNP
rs952520851 2827 dbSNP
rs1401810157 2828 dbSNP
rs1380170892 2829 dbSNP
rs1156336165 2834 dbSNP
rs1445886670 2839 dbSNP
rs1182578136 2840 dbSNP
rs1385529329 2840 dbSNP
rs1471728476 2851 dbSNP
rs1243642479 2864 dbSNP
rs1216172724 2870 dbSNP
rs1446384075 2871 dbSNP
rs1003912455 2872 dbSNP
rs1015254595 2877 dbSNP
rs184546322 2878 dbSNP
rs1316067281 2917 dbSNP
rs199618568 2919 dbSNP
rs976356302 2919 dbSNP
rs201214938 2922 dbSNP
rs1377176105 2933 dbSNP
rs1272309801 2940 dbSNP
rs1431879506 2943 dbSNP
rs1360490025 2944 dbSNP
rs781914248 2946 dbSNP
rs923560798 2950 dbSNP
rs953735118 2962 dbSNP
rs1296861461 2968 dbSNP
rs1426065222 2974 dbSNP
rs1365650789 2978 dbSNP
rs1163385638 2987 dbSNP
rs1403263163 2992 dbSNP
rs1421143789 2993 dbSNP
rs782061597 2996 dbSNP
rs781952616 3002 dbSNP
rs1261004952 3006 dbSNP
rs936777944 3008 dbSNP
rs1201485341 3009 dbSNP
rs1490880544 3010 dbSNP
rs1292606054 3017 dbSNP
rs868941930 3027 dbSNP
rs1220863498 3036 dbSNP
rs1320174562 3037 dbSNP
rs1275341158 3040 dbSNP
rs1215569431 3052 dbSNP
rs1340279247 3062 dbSNP
rs1276934978 3063 dbSNP
rs1407307509 3066 dbSNP
rs1346635206 3068 dbSNP
rs1292460454 3070 dbSNP
rs1052523740 3078 dbSNP
rs1355958158 3089 dbSNP
rs141179478 3091 dbSNP
rs1464962132 3092 dbSNP
rs781901522 3095 dbSNP
rs1046803522 3099 dbSNP
rs905130499 3102 dbSNP
rs782374800 3107 dbSNP
rs1048256828 3108 dbSNP
rs1266539022 3121 dbSNP
rs782001931 3124 dbSNP
rs1487532117 3125 dbSNP
rs1003964973 3126 dbSNP
rs1234868855 3131 dbSNP
rs868924095 3141 dbSNP
rs782109526 3143 dbSNP
rs1015307097 3147 dbSNP
rs1225682384 3148 dbSNP
rs1324927092 3154 dbSNP
rs782144784 3160 dbSNP
rs1301154776 3165 dbSNP
rs1384621593 3167 dbSNP
rs1374859851 3171 dbSNP
rs1298460323 3181 dbSNP
rs111526985 3186 dbSNP
rs72317989 3186 dbSNP
rs868932849 3188 dbSNP
rs868989551 3189 dbSNP
rs1470095489 3196 dbSNP
rs1173849589 3197 dbSNP
rs1377049351 3197 dbSNP
rs1431575442 3198 dbSNP
rs1179268675 3200 dbSNP
rs1457503287 3232 dbSNP
rs186862374 3233 dbSNP
rs997825271 3244 dbSNP
rs1483771103 3245 dbSNP
rs1255984772 3260 dbSNP
rs1319185192 3264 dbSNP
rs782487426 3264 dbSNP
rs953685221 3276 dbSNP
rs1238738991 3277 dbSNP
rs1374246921 3284 dbSNP
rs1338267228 3285 dbSNP
rs986782300 3289 dbSNP
rs1453172040 3290 dbSNP
rs1401224842 3296 dbSNP
rs376895906 3304 dbSNP
rs925518178 3307 dbSNP
rs958198061 3310 dbSNP
rs1345667900 3314 dbSNP
rs1159362719 3320 dbSNP
rs1439136666 3323 dbSNP
rs1378756886 3324 dbSNP
rs191694886 3326 dbSNP
rs781810463 3328 dbSNP
rs1424828756 3329 dbSNP
rs1255911698 3340 dbSNP
rs1199036364 3357 dbSNP
rs1487154447 3360 dbSNP
rs1215321866 3364 dbSNP
rs1287329407 3364 dbSNP
rs184156059 3372 dbSNP
rs1316793180 3382 dbSNP
rs868924774 3386 dbSNP
rs868935574 3387 dbSNP
rs1185915807 3388 dbSNP
rs1368073455 3388 dbSNP
rs1458617649 3388 dbSNP
rs782679826 3388 dbSNP
rs868990824 3388 dbSNP
rs1430641018 3390 dbSNP
rs782249158 3390 dbSNP
rs1199006907 3391 dbSNP
rs1264905364 3391 dbSNP
rs1271629438 3391 dbSNP
rs1450517764 3391 dbSNP
rs34507245 3391 dbSNP
rs371105161 3391 dbSNP
rs372185667 3391 dbSNP
rs879993104 3391 dbSNP
rs1197178530 3392 dbSNP
rs868972379 3392 dbSNP
rs1216519541 3393 dbSNP
rs1257207233 3393 dbSNP
rs782178939 3395 dbSNP
rs868994333 3395 dbSNP
rs1330592690 3396 dbSNP
rs782325127 3396 dbSNP
rs1393370864 3397 dbSNP
rs1046420836 3399 dbSNP
rs1173661376 3400 dbSNP
rs1477450257 3400 dbSNP
rs1375432718 3401 dbSNP
rs782014920 3402 dbSNP
rs1237149818 3403 dbSNP
rs1196577573 3404 dbSNP
rs1462475619 3405 dbSNP
rs1279328317 3407 dbSNP
rs1199807272 3408 dbSNP
rs1342710513 3409 dbSNP
rs1308778016 3410 dbSNP
rs1361258908 3411 dbSNP
rs1335194416 3413 dbSNP
rs1414414634 3417 dbSNP
rs1176390253 3421 dbSNP
rs1379361792 3421 dbSNP
rs1209098378 3424 dbSNP
rs782333156 3425 dbSNP
rs1285182252 3426 dbSNP
rs782798809 3426 dbSNP
rs1339269971 3427 dbSNP
rs1300569358 3429 dbSNP
rs1156241961 3430 dbSNP
rs1406756393 3430 dbSNP
rs868916137 3434 dbSNP
rs868969796 3436 dbSNP
rs1181105750 3438 dbSNP
rs782288428 3439 dbSNP
rs868977317 3441 dbSNP
rs1243835896 3443 dbSNP
rs1048793107 3444 dbSNP
rs1487885614 3446 dbSNP
rs1262591204 3448 dbSNP
rs1214482368 3461 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuuaauCCAUCACCGUCACCUu 5'
                || ||  |||||||| 
Target 5' ------GGCAGCAGCAGUGGAg 3'
1 - 16
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000373316.4 | 3UTR | CAGUGGAGAGAUGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000373316.4 | 3UTR | GGCAGCAGCAGUGGAGAGAUGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-6509-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055374 PDCD4 programmed cell death 4 2 4
MIRT378341 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT444668 CDKL2 cyclin dependent kinase like 2 2 2
MIRT446953 CD248 CD248 molecule 2 2
MIRT460332 CAMK4 calcium/calmodulin dependent protein kinase IV 2 6
MIRT464078 VPS4A vacuolar protein sorting 4 homolog A 2 2
MIRT464586 UBN2 ubinuclein 2 2 2
MIRT468482 SESN3 sestrin 3 2 2
MIRT468962 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT475455 HSPA8 heat shock protein family A (Hsp70) member 8 2 2
MIRT482403 ADRB1 adrenoceptor beta 1 2 10
MIRT486992 ZFAND2B zinc finger AN1-type containing 2B 2 2
MIRT489397 TUBB2A tubulin beta 2A class IIa 2 2
MIRT526319 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526560 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT526732 ZNF138 zinc finger protein 138 2 8
MIRT531581 STXBP5L syntaxin binding protein 5 like 2 2
MIRT532011 NOX5 NADPH oxidase 5 2 2
MIRT533407 TXLNG taxilin gamma 2 2
MIRT533436 TRPC5 transient receptor potential cation channel subfamily C member 5 2 2
MIRT533866 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT539254 ANKRD50 ankyrin repeat domain 50 2 2
MIRT541451 C15orf48 chromosome 15 open reading frame 48 2 2
MIRT566794 MIER3 MIER family member 3 2 2
MIRT569294 SURF6 surfeit 6 2 2
MIRT571336 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT572802 PPP3CB protein phosphatase 3 catalytic subunit beta 2 2
MIRT572813 MYO1C myosin IC 2 2
MIRT574219 DMRT2 doublesex and mab-3 related transcription factor 2 2 2
MIRT607259 GRAMD1B GRAM domain containing 1B 2 4
MIRT609307 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT615459 REPS1 RALBP1 associated Eps domain containing 1 2 2
MIRT616861 RPLP1 ribosomal protein lateral stalk subunit P1 2 2
MIRT619415 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT619652 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT625325 TNFRSF13B TNF receptor superfamily member 13B 2 2
MIRT638980 ARFIP2 ADP ribosylation factor interacting protein 2 2 2
MIRT639458 ZNF429 zinc finger protein 429 2 2
MIRT640550 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT641473 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT642720 ATXN3 ataxin 3 2 2
MIRT643048 SMN1 survival of motor neuron 1, telomeric 2 2
MIRT644921 SMN2 survival of motor neuron 2, centromeric 2 2
MIRT645875 ZNF275 zinc finger protein 275 2 2
MIRT649824 LIPG lipase G, endothelial type 2 2
MIRT649851 GYS2 glycogen synthase 2 2 2
MIRT649972 TRAFD1 TRAF-type zinc finger domain containing 1 2 2
MIRT650675 ZNF259 ZPR1 zinc finger 1 1
MIRT651319 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT652876 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT652881 SYVN1 synoviolin 1 2 2
MIRT654144 RPAP2 RNA polymerase II associated protein 2 2 2
MIRT657080 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT657181 INO80C INO80 complex subunit C 2 2
MIRT657830 GJD3 gap junction protein delta 3 2 2
MIRT657897 GDF7 growth differentiation factor 7 2 2
MIRT659631 CDKN2AIP CDKN2A interacting protein 2 2
MIRT663115 SPTA1 spectrin alpha, erythrocytic 1 2 2
MIRT664739 METTL16 methyltransferase like 16 2 2
MIRT667551 LRAT lecithin retinol acyltransferase 2 2
MIRT668552 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT682893 XIAP X-linked inhibitor of apoptosis 2 2
MIRT683092 PRRG4 proline rich and Gla domain 4 2 2
MIRT683102 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT697648 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT709158 ZNF419 zinc finger protein 419 2 2
MIRT713220 RCAN2 regulator of calcineurin 2 2 2
MIRT713277 LAIR1 leukocyte associated immunoglobulin like receptor 1 2 2
MIRT715008 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT715051 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT715696 PNMAL2 paraneoplastic Ma antigen family member 8B 2 2
MIRT717250 TMEM246 transmembrane protein 246 2 2
MIRT717322 PGK1 phosphoglycerate kinase 1 2 2
MIRT717587 MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like 2 2
MIRT718122 CHST4 carbohydrate sulfotransferase 4 2 2
MIRT718418 CALN1 calneuron 1 2 2
MIRT718750 ZNF490 zinc finger protein 490 2 2
MIRT720048 PPP1R3F protein phosphatase 1 regulatory subunit 3F 2 2
MIRT721497 THRB thyroid hormone receptor beta 2 2
MIRT722531 EPRS glutamyl-prolyl-tRNA synthetase 2 2
MIRT723279 KRTAP21-2 keratin associated protein 21-2 2 2
MIRT724813 MSX2 msh homeobox 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6509-3p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-6509-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6509-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6509-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6509-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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