pre-miRNA Information
pre-miRNA hsa-mir-4301   
Genomic Coordinates chr11: 113450023 - 113450088
Description Homo sapiens miR-4301 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4301
Sequence 11| UCCCACUACUUCACUUGUGA |30
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs184176277 2 dbSNP
rs1191324913 13 dbSNP
rs1369198005 15 dbSNP
rs1036973189 16 dbSNP
rs944900541 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RBM41   
Synonyms -
Description RNA binding motif protein 41
Transcript NM_018301   
Other Transcripts NM_001171080   
Expression
Putative miRNA Targets on RBM41
3'UTR of RBM41
(miRNA target sites are highlighted)
>RBM41|NM_018301|3'UTR
   1 AATATATATAAATTGTGGGTCCTGGATGGTCTTTCTTGAATTGGAATCTTGGATCTAGGATTTATGTATAGACACCAGTT
  81 TGTTTGGAGTTGAAGAGGAAAAACTAACTGAGGGAGGGGAAAAAAGTAATTTCAGCTTTTGGAGAGAACTGGTAGAAAAC
 161 ATTTTCTATTATATAATTGAAGACTATATAGGACAGATGATATGCTGAGTATGAAGGGTAAAGTGCAAAGAGTATTATTT
 241 TCTCAGGATGAATTACAACGGATTATTCCTAAGGATTTTTAAAAATCTTTATAATTTTTCTGGGGTCCTCAATATTTGTC
 321 TCTAGAGATAACATTCTTTCTTAGACTGCTTCGTATACACAGAAATAAAAAACTAATTAAATGTTGAAATATTTCTTTAC
 401 TAGAGCCCATTTGCCATATTTCATCCACCTAGTAAATAAAAGAGTAGGACCCCCAGGCCTAAGCATCAACAAATGCTATT
 481 AAGTCAGAACTATCAGCAGTAATAGTAGGTAGTTTCATAAGTCAGTTGACTTATTTAATGAATGCTTCCTCCACAAGTTA
 561 TCAGTCTTCAAAAAGCTATATATTTTTCTAGTGAAATATTTTAGATCAAAATGTTGGTGTTCTCACAGCCATTTAAGCTA
 641 GCAACCATTGAGTATCATTGAATTCATAGCAATAAACATTGATTAAGTGTCTAATATATGTTAAATATTAGGCATATGAA
 721 TTTTAGAAGAGGAACATACAAGCAAAGAATGCCAAACGGAAATGGAAATAAAGCGTTCTCTAGAAAAGAGGATGCCAGTC
 801 ACAAATCCCCCAGTTGTTTGTTTATGGTTGCTGGAAAATAAAAAAACAATATACAGAGAGGAAGTAGTACAAACTGGAGT
 881 CAGACCTGTACAGCCACACTTAACATTCTATGACCTTGGCAAGTCACTTAATCTGAGCCTCACATTTTTCATCTATAAAG
 961 TGAGGATAATAATGCTACTTACCTCACTGGGTTGTGAAGATGAACTGAGATATTATCCAGGCTGAAGAACAGAAAGGAAA
1041 ACAATGAATAAAATTGAACAAGAGTATAGAACCTGTGTGACACCATTAAGCATTCCTACATATTTCTAATGGGAGTACAG
1121 GAAAAAAGGAAAAGAAATGAAGGAGCAGAAAAATATTCTAAGAAATAATGGCTATAAATACCCCCGATTTGATGAGAGAC
1201 ATTAACCTATACATCCCAGAAGAAAAAGAAATTACAGACAGATACATCATAAGAAAAATGCTAAAACCCAAAAACGAAAA
1281 GAAAATCTTAACAGCAATACGAGAAAAATGAGCCATCACTTACCAAGGAACCCAAATAAAATTAGTAGTTGACTTCCCCT
1361 CAGAAACAATGGCAGTGGCAGTGGAATAACACATTCAAAGTGTTCAAAGAAAATAACTGTCAACCAATAATCCTATATAC
1441 AATAAAACTATTTTTCAAAAATGAACGTGAAATAAAACATCTCACATAATCAAAAACCAAGAGAATTTGTTGCTGGCAGA
1521 CCTGACTTGCTGGAAATACAAAAGGAAGTTCTTCAGCCTGAAAGCAAGTGACCACAGACAGTAATCTGAATCTACACACA
1601 TGCAGAAAAAGAGCACAGGCAAAAATAATTATGTAATTATCAGAAACAATCTATGCATTTTTCTTTTTTCTCTTAACTAA
1681 TGTAAAACACAGTTGTATAAAACAATATGTATATAGTTGCATCGTTTGGCCTATAACGTATAAAATATAATATATTTGCC
1761 GATAACAGGTTGAAGAAGCTGAGTGGAAGCAAAACTGTCTTGTACTAAAGAACTGACTCCAGATGGTAAGACAAATCCAC
1841 AGGAACAAATGGAGAGAACGTGAAATAGGAAATAAGTTTAATATAAAAAAACTATAAACATATACTTACTCTTCTCTCAG
1921 CTTCTTTTAAAGATGTAAAATTATATTAAGTAATTATAATAATGTGTGTTGGGTTTGTAATGTATAGGAATAACATATAT
2001 AACAATAATACCACAAAGCGGGGGATGGGTTTATATAGGAATAGGGTTGTTACATTGGAATTAAGTTAGTGTTTATCTGA
2081 AGCCTATTCTGTTTAGTTAAGATGTGTATGGTAAGCCCTAGAGCAACCACTGAGGAAATAACTTTTAAAAAATCAAAAAT
2161 ATTATTAAATGTAAATATCACATTATGAAATAATGCAAAAGAAGGAATGGAGAAGCAAAAAGCTTGAGGCATATCAAAAA
2241 CAATAAAATGGCAGTCATAAGTCTTCCTATATCAAAATAACAATGTGCATGGATTAAGCAATACTATAAAAGGCAGAGAT
2321 GTCAGAAACAAGTCTGATTCCACTTCATGCCATCTATTTGAGACACACTTTAGAAGATAGAAAGAGATTAAAGGTAAAAG
2401 GATGGAAAACAAATATATCACACAGACAACAGCCATAAGAAAGCTGGAGTGGCTATTCTAATACCAGACAAAATAGACTT
2481 AAAAAAATGTTACTGGAGATAAAGAGTAAAATGTTACAATGATAAAAGGGTCAATACATCAGGAAGATGTAACAACTATA
2561 AATATATATGCATCTAACAGTAGAGCCCAAAATACATGAAGCAAAAACTGAAAGGAAAGGAGAAACAGATAAGTCCATAA
2641 AAAGAGTTGGAATATTCAATACCCCTTTTTCAATAATAGAGCACCTAGACAGAAGATAAACCAGGAAATAGAAGACTTGA
2721 ACAACATTATAAGGCAAATTGACCTAAAAGACATCTATAGAACTTTCCACCCAACATCAGAATACATATTCTTCTCGAGT
2801 GCATATGAAACATCTCCAAAATAGGTCATAAGTTAAAGCATAAAACAAGCCTTAATAAATATAAGTAGACTGAAATCATG
2881 CAAAGCATGCCCTCTGACCACATGGGATGAAGTTAGAAAACAATGAAAAGTTGGGAAACTCACAAATATGTGGAAATCAG
2961 ACACACTTGTAAGTGACTGGCTGGGTGCAGTAGCTCACGCCTGAAATCTCAGCACTTTGGTAGGCCGAAGTGGGAGGATT
3041 CCTTGGATCCCTTGAGACCAGGAATTCAAGACCAGCCTGGGCAACACAGCAAGACCCTGTCATTACCAAAAAAAAAAAAA
3121 AATGTGTCAAAGAAAAAAATCATAAGGGAAATTACAAAACCCTTTGAGATGAGTGATAATGAAGACACAACAAACCAAAA
3201 CTTACAAGATGCAGCTAAAGCAGTGTTTACAGGGAAATCTATAGGTACAAATGCCTGTACTTAAGAAGAAAAAAGACCAG
3281 GCACAGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCCGGGGCGGGTGGAGATCATGGGGTCAGGAGATCGAGACC
3361 ATTCTGGGTAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTCGTGGGCACCTGTAGTC
3441 CCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCAGAGCTTGCAGTGAGCCAAGATTGCACCACT
3521 GCACTCCAGCCTGGGCAGCAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAGAAAAGAAAGACCATAGCACTAACCT
3601 CACTTTACACCTTAAGACCCTGGAAAAAGAAGAGCAAACTAAACCTAGAGCCAGGAGAAAGAAGGAAATATAAAAGATTA
3681 GATGAGAATAAATGAAATAGAGTGAAGAAAAGTAGAGAAAAATCAATGCAACCAAAAGTTGATTCTATAAAAAGATCAGT
3761 AAAACTGACACACCTTCTGCTAGACTGACCAGGAAAAAAGGAGAATCAAATTACTAAAATCAGAAATGAAGGAGGGAACA
3841 TTTCAACTGAACTTGTAGAAATAAAAAAGATTATGAAGGCATATTATGAATAATTTTATGTCAATAAATTATCAATGAAG
3921 TGGACAAATTCCTAGGAAGACACAAACTACCAAAACCAACTCAGAAGTAGAAAACTTGAATAAACCTATATCAAGTAAAT
4001 AGGTTAAATGAGTTTTTGAAAAGATACCCACAAAGAAGAGCCCAGGCTGAAATAGCTTCTTAAATGAATTCTACAAAACT
4081 TTTAATGAAAAATTAATACAAATTCTTCACAAACTTTTTCAAAAAGTAGAAGAGTGGTGAACACTTCTGACACATACTAC
4161 AACATGGAAGAACTCAGAATATGCTCAGTGCAAGAAGCCAGTCACAAAAGACTACATATTATATGATACTATTTATATGA
4241 AGTGTCCAGAATTGGCAAATATATAGAGATAGAAAGTGGATTAGTGGTTGCTTAGGGCTAGCACAGAGTTGGGGGGAATG
4321 GGAAGGGCTGGGGGTAACAGTTGAAGTGTATGAAGTTTCTTTAGAGGTTGATGAAAGTGTTCTAAAATTGGTCGTGGTGG
4401 TGATTTCACAACTCTGAATATACTAAAAACCAGGAATTGTACACGTTAAATGGGTGAATTGTGTGGTGTATGAATTATAT
4481 CTCAATAAAACTCACAAAAGTAGGGGTGTCCATCAATAGGAAAATGGGTAAATAACTTATGGTACATCTATTTAGTACAA
4561 TACTATGCAGCCATTAAAATAGTGAAGTGTATCTATGAATATATTATGACCTATACTCATGTCCAAGGTTGTGTATTAAG
4641 TTAATAAACAAGATGCAGAAATATGTATAGTATGAATACATTTTTATGCAAAAGCATTCATTTATGTATAGTATGTATGT
4721 ATATAGATATTTCTGAATAAATTTAAGAAAAAGCTGGGAAATAGACATAGAAAGTTATAAACCTTTGGAAGTGGGATTGA
4801 ATAGGCTGAAGGAGGACTTTCACTTTGTAAAATTTTTAAAGTGGTGTGATTTTGGGGTGATTTTTACTTTTTTCATTTTT
4881 TTTTTTAACTAAAAAATTTTTTAAAAAATATTCTGCCAATGGCATGGCTTCCAGAATATTTGTCAGGCCTACTCTGGGGA
4961 TATCATCTGACTATACTCAGGACAAACTCCTATTCCTTTGATATACTGCTCACTTAGGATTAACACTCTAATTTCAGACA
5041 TAGTTAAGTGACAAGGAATAAATTATCCTGATATAGCCTCTGATACATGTTACCAGGGGCATACTTCTAAGCTGGACTTT
5121 TTAGAAGGAAGTGCTTCCTGTTAGGTAGAAAATTTCACCTCTGCTTTTTACTAGACCTACAGACCACTGCAATTGAGGAA
5201 CATAAAAATGAAGGATATCCTTCAACTGGTGCATAGATAAACCGTAGTATATCCATGCAATGGAATCCTACTCAGCAATA
5281 AACTAATGAAATACACATGCAACCACTTGGATGAATCTTAAATGCATTTTACTAAGTAAAAGAAGCCAAACTCAAAAGGC
5361 TGCTTACTGTTTGATTCCATTCATATTATTTTCTCAAAAAGCAAAACAATAGGGATGGAGAAAAAACTTCAGTGGATGTC
5441 AGGGGTTAAGGTTGGAATGCTCCTTGACTACAAAGTGGTAGCATGAGGAATTTGTCTTAATAATTGAAATTTTCCGTGTC
5521 TTTATTGTAGTTACATAAGTATATGCATTTGTCAAAACCCATAGGCTTGTACACTAAAAAGGATGAATTTTACTGTGTGT
5601 AATTTTTTTAAATAAATGTTATTTTTATGGAGGAAAGAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agugUUCACUUCAUCACCcu 5'
              |||||:| ||||||  
Target 5' tagaAAGTGGATTAGTGGtt 3'
4270 - 4289 148.00 -14.40
2
miRNA  3' aguGUUCACUUCAUCACCCu 5'
             ||:| | :|| ||||| 
Target 5' agcCAGGCGTGGTCGTGGGc 3'
3411 - 3430 129.00 -14.10
3
miRNA  3' agUGUUCACUUCAUCACCCu 5'
            ||   ||:|  |||||| 
Target 5' aaACCTTTGGA--AGTGGGa 3'
4779 - 4796 121.00 -11.20
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs773559637 8 dbSNP
rs763221762 11 dbSNP
rs772335736 12 dbSNP
rs748235606 13 dbSNP
rs146046356 14 dbSNP
rs371858336 23 dbSNP
rs1446346104 25 dbSNP
rs1204487625 26 dbSNP
rs749711213 32 dbSNP
rs1031776971 39 dbSNP
rs780411576 44 dbSNP
rs746251164 55 dbSNP
rs779204935 57 dbSNP
rs1473091806 66 dbSNP
rs915434596 68 dbSNP
rs985612751 84 dbSNP
rs757705767 90 dbSNP
rs1256741884 95 dbSNP
rs932733730 112 dbSNP
rs922656225 113 dbSNP
rs1440601881 125 dbSNP
rs1195108410 126 dbSNP
rs1007975151 133 dbSNP
rs113278330 145 dbSNP
rs977158205 152 dbSNP
rs1168206812 154 dbSNP
rs1185690773 165 dbSNP
rs961365621 175 dbSNP
rs1174315515 176 dbSNP
rs1256923030 191 dbSNP
rs1413264645 191 dbSNP
rs1320759298 192 dbSNP
rs1327401523 195 dbSNP
rs1016005047 200 dbSNP
rs1294987120 223 dbSNP
rs1372656045 229 dbSNP
rs768372674 230 dbSNP
rs996259413 234 dbSNP
rs900696802 260 dbSNP
rs1206841783 266 dbSNP
rs952613821 280 dbSNP
rs142775579 287 dbSNP
rs942301688 292 dbSNP
rs1246475990 303 dbSNP
rs1012675509 305 dbSNP
rs895589294 312 dbSNP
rs1227722103 334 dbSNP
rs1464556778 343 dbSNP
rs781731303 352 dbSNP
rs998934837 353 dbSNP
rs902887308 361 dbSNP
rs1318925954 369 dbSNP
rs1396272141 372 dbSNP
rs757821981 382 dbSNP
rs764494150 416 dbSNP
rs1048227950 422 dbSNP
rs1339547461 435 dbSNP
rs894033420 441 dbSNP
rs185856723 446 dbSNP
rs1240518981 450 dbSNP
rs1280094117 456 dbSNP
rs139560393 458 dbSNP
rs1454073397 464 dbSNP
rs113850894 470 dbSNP
rs1206634906 477 dbSNP
rs922687905 482 dbSNP
rs1470041228 487 dbSNP
rs1214569731 505 dbSNP
rs747564443 506 dbSNP
rs940100734 511 dbSNP
rs931770090 512 dbSNP
rs1364925259 513 dbSNP
rs1472530468 525 dbSNP
rs1157486982 536 dbSNP
rs1420452963 548 dbSNP
rs1462236081 550 dbSNP
rs767875857 557 dbSNP
rs908566376 568 dbSNP
rs980202312 578 dbSNP
rs759792596 585 dbSNP
rs1392678892 604 dbSNP
rs111227703 615 dbSNP
rs1161883676 628 dbSNP
rs952644903 632 dbSNP
rs1294991316 637 dbSNP
rs1369226564 641 dbSNP
rs915806377 642 dbSNP
rs1189903184 644 dbSNP
rs1402342662 669 dbSNP
rs1487615028 676 dbSNP
rs914435429 681 dbSNP
rs765028263 682 dbSNP
rs990047582 685 dbSNP
rs956189751 695 dbSNP
rs991284836 721 dbSNP
rs761503195 723 dbSNP
rs1031327857 738 dbSNP
rs1475753923 744 dbSNP
rs776699335 748 dbSNP
rs955067951 757 dbSNP
rs1463195515 758 dbSNP
rs1168049852 764 dbSNP
rs758369900 774 dbSNP
rs967517537 775 dbSNP
rs1021303619 782 dbSNP
rs1011633364 786 dbSNP
rs1395289835 793 dbSNP
rs1465335315 795 dbSNP
rs894064530 798 dbSNP
rs1320209313 808 dbSNP
rs1049969106 814 dbSNP
rs1275546848 824 dbSNP
rs1341587109 830 dbSNP
rs1999003 856 dbSNP
rs148346119 861 dbSNP
rs1483849681 866 dbSNP
rs964832549 916 dbSNP
rs1254496443 917 dbSNP
rs1158344839 919 dbSNP
rs1430607457 923 dbSNP
rs1188811593 933 dbSNP
rs1389124373 934 dbSNP
rs1016428380 942 dbSNP
rs1174948554 944 dbSNP
rs1284367809 950 dbSNP
rs1465476813 951 dbSNP
rs1041593947 955 dbSNP
rs1363827188 969 dbSNP
rs1382507370 970 dbSNP
rs1362399654 988 dbSNP
rs940150716 998 dbSNP
rs563525559 999 dbSNP
rs1226331882 1001 dbSNP
rs374316964 1041 dbSNP
rs908593607 1043 dbSNP
rs1048410063 1045 dbSNP
rs774929529 1053 dbSNP
rs886659197 1054 dbSNP
rs371116442 1056 dbSNP
rs1487073517 1064 dbSNP
rs1209694818 1066 dbSNP
rs1436439420 1074 dbSNP
rs1447251467 1078 dbSNP
rs1347501778 1085 dbSNP
rs931275610 1090 dbSNP
rs771739243 1100 dbSNP
rs1173869739 1117 dbSNP
rs1346846425 1121 dbSNP
rs1454166866 1134 dbSNP
rs991400733 1138 dbSNP
rs1319613512 1153 dbSNP
rs1388271647 1158 dbSNP
rs745453982 1163 dbSNP
rs182711767 1167 dbSNP
rs755231310 1169 dbSNP
rs6622141 1174 dbSNP
rs1389616816 1181 dbSNP
rs977627909 1182 dbSNP
rs373717126 1188 dbSNP
rs1299845139 1201 dbSNP
rs1319226178 1203 dbSNP
rs1243727081 1209 dbSNP
rs757698127 1213 dbSNP
rs1267886831 1216 dbSNP
rs1463309855 1233 dbSNP
rs1450758303 1241 dbSNP
rs1215187654 1246 dbSNP
rs1246858274 1248 dbSNP
rs907217185 1259 dbSNP
rs1290417685 1285 dbSNP
rs1021752626 1286 dbSNP
rs1224238451 1289 dbSNP
rs1472877313 1297 dbSNP
rs1044485728 1300 dbSNP
rs766212329 1301 dbSNP
rs953056035 1314 dbSNP
rs1462759200 1320 dbSNP
rs1325814225 1335 dbSNP
rs1228437450 1345 dbSNP
rs1363476284 1347 dbSNP
rs1054324226 1352 dbSNP
rs749610739 1373 dbSNP
rs1288204883 1385 dbSNP
rs1327531220 1390 dbSNP
rs1235478382 1392 dbSNP
rs1290211056 1402 dbSNP
rs1436392627 1406 dbSNP
rs1218831448 1407 dbSNP
rs1234106637 1417 dbSNP
rs1682046 1421 dbSNP
rs997127240 1427 dbSNP
rs1181371426 1432 dbSNP
rs1249482445 1436 dbSNP
rs901411004 1440 dbSNP
rs1476079746 1444 dbSNP
rs924482316 1450 dbSNP
rs1414847369 1458 dbSNP
rs1777505 1465 dbSNP
rs1019795346 1466 dbSNP
rs986751867 1467 dbSNP
rs1372504125 1470 dbSNP
rs1410438820 1478 dbSNP
rs55953509 1491 dbSNP
rs1349116717 1497 dbSNP
rs920954395 1507 dbSNP
rs1417055787 1517 dbSNP
rs1285153404 1522 dbSNP
rs887203197 1538 dbSNP
rs1048925028 1544 dbSNP
rs186176370 1547 dbSNP
rs1342298288 1563 dbSNP
rs1203754907 1569 dbSNP
rs752857038 1575 dbSNP
rs773094296 1579 dbSNP
rs938612557 1590 dbSNP
rs1236664054 1601 dbSNP
rs767638213 1604 dbSNP
rs1189396792 1611 dbSNP
rs1180340486 1617 dbSNP
rs767469682 1618 dbSNP
rs1682047 1621 dbSNP
rs1392212821 1632 dbSNP
rs1777504 1635 dbSNP
rs1006762546 1652 dbSNP
rs945835302 1658 dbSNP
rs1477692869 1675 dbSNP
rs1269310632 1676 dbSNP
rs2769031 1684 dbSNP
rs1369319081 1691 dbSNP
rs914401633 1697 dbSNP
rs755265661 1708 dbSNP
rs989936240 1713 dbSNP
rs373668428 1723 dbSNP
rs953091972 1724 dbSNP
rs373985864 1728 dbSNP
rs1026954867 1729 dbSNP
rs751892061 1737 dbSNP
rs750143442 1738 dbSNP
rs1319313420 1742 dbSNP
rs1429682356 1747 dbSNP
rs181971927 1748 dbSNP
rs1383370426 1749 dbSNP
rs1044452811 1755 dbSNP
rs1164542034 1755 dbSNP
rs756770120 1760 dbSNP
rs369366593 1761 dbSNP
rs763474454 1769 dbSNP
rs1752309 1778 dbSNP
rs762959662 1780 dbSNP
rs893189740 1782 dbSNP
rs1478562435 1785 dbSNP
rs1242523627 1789 dbSNP
rs1682048 1799 dbSNP
rs1054548408 1800 dbSNP
rs1445261527 1804 dbSNP
rs752507739 1807 dbSNP
rs1215707044 1814 dbSNP
rs1335532191 1815 dbSNP
rs1272560059 1819 dbSNP
rs1231690432 1820 dbSNP
rs924481184 1823 dbSNP
rs1051438427 1824 dbSNP
rs1682049 1834 dbSNP
rs776270614 1845 dbSNP
rs920921823 1848 dbSNP
rs1433884402 1852 dbSNP
rs1020247920 1859 dbSNP
rs1332320183 1860 dbSNP
rs764112122 1868 dbSNP
rs909614407 1879 dbSNP
rs1342756125 1885 dbSNP
rs1230076543 1892 dbSNP
rs1268512182 1892 dbSNP
rs1444720872 1893 dbSNP
rs551600865 1894 dbSNP
rs1175516605 1899 dbSNP
rs1027107946 1900 dbSNP
rs995577350 1904 dbSNP
rs1413811408 1912 dbSNP
rs1453426500 1912 dbSNP
rs1199648753 1914 dbSNP
rs1429866385 1925 dbSNP
rs1178521695 1928 dbSNP
rs982567422 1939 dbSNP
rs1477322054 1949 dbSNP
rs1161894216 1954 dbSNP
rs1413172376 1954 dbSNP
rs894536047 1964 dbSNP
rs1318165657 1965 dbSNP
rs1392370183 1967 dbSNP
rs1386892474 1968 dbSNP
rs1055740546 1977 dbSNP
rs938641625 1983 dbSNP
rs1322270946 1986 dbSNP
rs1329332171 1990 dbSNP
rs774982458 1992 dbSNP
rs1177418459 2002 dbSNP
rs370061501 2004 dbSNP
rs1682050 2005 dbSNP
rs533445188 2019 dbSNP
rs773920101 2020 dbSNP
rs1259237420 2036 dbSNP
rs1358702490 2044 dbSNP
rs1221772508 2045 dbSNP
rs1210583883 2047 dbSNP
rs1042057713 2054 dbSNP
rs190779954 2069 dbSNP
rs1184972492 2094 dbSNP
rs945980433 2108 dbSNP
rs1461402443 2110 dbSNP
rs149632629 2124 dbSNP
rs138542296 2130 dbSNP
rs1328902842 2142 dbSNP
rs1369878166 2152 dbSNP
rs1023228521 2153 dbSNP
rs1162220634 2155 dbSNP
rs879230510 2165 dbSNP
rs1012882920 2168 dbSNP
rs1411086659 2169 dbSNP
rs1308587201 2171 dbSNP
rs762722187 2176 dbSNP
rs893160360 2196 dbSNP
rs1314610256 2217 dbSNP
rs921659262 2218 dbSNP
rs1245811942 2227 dbSNP
rs375706114 2231 dbSNP
rs1357407009 2233 dbSNP
rs1276035123 2235 dbSNP
rs1482996413 2237 dbSNP
rs777110186 2251 dbSNP
rs1377298920 2263 dbSNP
rs186674433 2271 dbSNP
rs1258720107 2288 dbSNP
rs1424694347 2292 dbSNP
rs1302523461 2293 dbSNP
rs966064719 2304 dbSNP
rs771458879 2306 dbSNP
rs983479669 2308 dbSNP
rs951648263 2322 dbSNP
rs1431160412 2325 dbSNP
rs1027122459 2336 dbSNP
rs995608499 2337 dbSNP
rs770458088 2340 dbSNP
rs1285715 2341 dbSNP
rs1002949643 2347 dbSNP
rs907235880 2352 dbSNP
rs141115633 2353 dbSNP
rs770428767 2356 dbSNP
rs1402645954 2359 dbSNP
rs1395193436 2363 dbSNP
rs1050978249 2367 dbSNP
rs1010600899 2368 dbSNP
rs181716805 2370 dbSNP
rs568929468 2371 dbSNP
rs1342145219 2378 dbSNP
rs1203044441 2380 dbSNP
rs1258243830 2386 dbSNP
rs1483797131 2386 dbSNP
rs1200222611 2394 dbSNP
rs1240936671 2401 dbSNP
rs778376049 2402 dbSNP
rs1188709895 2404 dbSNP
rs1411129810 2409 dbSNP
rs1178174360 2410 dbSNP
rs34845722 2413 dbSNP
rs1378081851 2417 dbSNP
rs1180937687 2422 dbSNP
rs931766531 2426 dbSNP
rs921688703 2429 dbSNP
rs1040181276 2430 dbSNP
rs1444643374 2433 dbSNP
rs781762089 2435 dbSNP
rs1404269344 2442 dbSNP
rs1437530558 2442 dbSNP
rs944470296 2449 dbSNP
rs755179819 2458 dbSNP
rs1364588020 2460 dbSNP
rs4826949 2464 dbSNP
rs1313271166 2468 dbSNP
rs188520779 2475 dbSNP
rs748109485 2485 dbSNP
rs1218342404 2488 dbSNP
rs1208967218 2489 dbSNP
rs1320320474 2489 dbSNP
rs1484617449 2500 dbSNP
rs1312202399 2504 dbSNP
rs1192403999 2511 dbSNP
rs1425835869 2513 dbSNP
rs1229103021 2519 dbSNP
rs183804163 2524 dbSNP
rs1295565604 2540 dbSNP
rs370601054 2558 dbSNP
rs974219620 2569 dbSNP
rs753693985 2571 dbSNP
rs1034474928 2574 dbSNP
rs1387866101 2576 dbSNP
rs1289404101 2580 dbSNP
rs1455107837 2591 dbSNP
rs1295361024 2595 dbSNP
rs377476176 2596 dbSNP
rs1368992673 2601 dbSNP
rs763726930 2622 dbSNP
rs982922618 2627 dbSNP
rs1331692222 2629 dbSNP
rs1229336819 2646 dbSNP
rs1267152517 2659 dbSNP
rs1163630673 2662 dbSNP
rs1003391619 2686 dbSNP
rs1223215747 2702 dbSNP
rs919410270 2708 dbSNP
rs1246767352 2710 dbSNP
rs1487839526 2712 dbSNP
rs779113713 2725 dbSNP
rs981597660 2731 dbSNP
rs755136185 2737 dbSNP
rs1020719265 2748 dbSNP
rs1010215843 2753 dbSNP
rs760616814 2754 dbSNP
rs1054340306 2759 dbSNP
rs996086836 2763 dbSNP
rs1407622522 2779 dbSNP
rs1023199018 2785 dbSNP
rs150110302 2786 dbSNP
rs991752393 2796 dbSNP
rs767436969 2797 dbSNP
rs957343958 2797 dbSNP
rs1410868900 2819 dbSNP
rs999338699 2827 dbSNP
rs903234094 2828 dbSNP
rs1229688694 2831 dbSNP
rs1290063668 2835 dbSNP
rs1219595518 2841 dbSNP
rs1320618784 2841 dbSNP
rs759086144 2846 dbSNP
rs1483341539 2858 dbSNP
rs1230979192 2861 dbSNP
rs1473620284 2868 dbSNP
rs773711197 2875 dbSNP
rs770648857 2876 dbSNP
rs762447189 2886 dbSNP
rs773642108 2923 dbSNP
rs899692313 2925 dbSNP
rs1487669926 2930 dbSNP
rs1040190438 2943 dbSNP
rs1039585552 2949 dbSNP
rs1430938279 2949 dbSNP
rs944465854 2952 dbSNP
rs1223482076 2971 dbSNP
rs770342539 2973 dbSNP
rs1047851686 2976 dbSNP
rs1272532493 2979 dbSNP
rs1450574832 2988 dbSNP
rs1227707189 2998 dbSNP
rs1377951283 2999 dbSNP
rs930278139 3021 dbSNP
rs12388332 3026 dbSNP
rs1046759033 3027 dbSNP
rs1342183278 3030 dbSNP
rs974332662 3047 dbSNP
rs1270753586 3050 dbSNP
rs191761310 3058 dbSNP
rs927492797 3065 dbSNP
rs1238307451 3067 dbSNP
rs1461032816 3077 dbSNP
rs1181884349 3080 dbSNP
rs1392113320 3089 dbSNP
rs929637717 3090 dbSNP
rs1292779615 3099 dbSNP
rs1424870635 3100 dbSNP
rs1367012692 3104 dbSNP
rs1166356173 3106 dbSNP
rs1428480391 3107 dbSNP
rs1335272337 3108 dbSNP
rs1373153607 3108 dbSNP
rs1173154466 3109 dbSNP
rs1404979851 3115 dbSNP
rs1450034132 3116 dbSNP
rs1322065705 3119 dbSNP
rs1184295565 3123 dbSNP
rs1268390593 3123 dbSNP
rs1491341380 3123 dbSNP
rs35721823 3123 dbSNP
rs397896690 3123 dbSNP
rs576206372 3123 dbSNP
rs60574251 3123 dbSNP
rs1432003032 3124 dbSNP
rs1491201952 3124 dbSNP
rs1267079764 3125 dbSNP
rs1200649851 3127 dbSNP
rs1202015170 3132 dbSNP
rs1250090054 3135 dbSNP
rs927693171 3136 dbSNP
rs747138216 3137 dbSNP
rs1240936228 3140 dbSNP
rs1173615740 3141 dbSNP
rs1479282863 3141 dbSNP
rs1429036717 3144 dbSNP
rs1249828813 3185 dbSNP
rs1160961228 3192 dbSNP
rs1682051 3195 dbSNP
rs971908002 3199 dbSNP
rs950167940 3205 dbSNP
rs758647279 3206 dbSNP
rs916110063 3210 dbSNP
rs780286927 3217 dbSNP
rs1321191545 3223 dbSNP
rs1229492401 3224 dbSNP
rs1310412895 3229 dbSNP
rs1270297593 3237 dbSNP
rs1204691746 3239 dbSNP
rs559574315 3240 dbSNP
rs373231798 3253 dbSNP
rs1405281993 3256 dbSNP
rs1453335133 3278 dbSNP
rs1200242882 3283 dbSNP
rs991721128 3285 dbSNP
rs1020331754 3286 dbSNP
rs1184740409 3294 dbSNP
rs1412336979 3294 dbSNP
rs957679633 3295 dbSNP
rs1347181497 3299 dbSNP
rs1392265208 3307 dbSNP
rs1305730363 3311 dbSNP
rs750551145 3322 dbSNP
rs957392979 3323 dbSNP
rs755855263 3327 dbSNP
rs996119946 3328 dbSNP
rs896710778 3331 dbSNP
rs1238613074 3344 dbSNP
rs1056842991 3345 dbSNP
rs750235627 3354 dbSNP
rs1177813726 3355 dbSNP
rs1291736745 3359 dbSNP
rs1490000521 3364 dbSNP
rs779179877 3367 dbSNP
rs967800563 3373 dbSNP
rs6616624 3381 dbSNP
rs1181715287 3390 dbSNP
rs1369788902 3394 dbSNP
rs752455836 3396 dbSNP
rs1438658331 3415 dbSNP
rs1252721603 3417 dbSNP
rs1198765210 3418 dbSNP
rs1482978066 3419 dbSNP
rs1262364995 3425 dbSNP
rs767490600 3432 dbSNP
rs1308490548 3437 dbSNP
rs1395548823 3439 dbSNP
rs1008691662 3450 dbSNP
rs1325425144 3451 dbSNP
rs886196274 3456 dbSNP
rs1286294479 3463 dbSNP
rs1237855781 3464 dbSNP
rs1047507882 3465 dbSNP
rs754871192 3468 dbSNP
rs1342451994 3474 dbSNP
rs930391112 3475 dbSNP
rs1336027465 3483 dbSNP
rs751085672 3485 dbSNP
rs765750867 3493 dbSNP
rs1393742422 3498 dbSNP
rs1252363452 3500 dbSNP
rs1480523593 3504 dbSNP
rs140374292 3510 dbSNP
rs1337889259 3537 dbSNP
rs1245318089 3538 dbSNP
rs1182539566 3539 dbSNP
rs1382860421 3540 dbSNP
rs1386882310 3543 dbSNP
rs1450752571 3544 dbSNP
rs1169169785 3545 dbSNP
rs1372409771 3552 dbSNP
rs1158941627 3554 dbSNP
rs1470734044 3556 dbSNP
rs1365702559 3557 dbSNP
rs1185702258 3558 dbSNP
rs938326614 3569 dbSNP
rs1453668223 3570 dbSNP
rs772809948 3571 dbSNP
rs1380711584 3574 dbSNP
rs1202676973 3575 dbSNP
rs1225771113 3575 dbSNP
rs1230638233 3575 dbSNP
rs1296978862 3575 dbSNP
rs1307395204 3575 dbSNP
rs374463468 3575 dbSNP
rs1243891193 3579 dbSNP
rs1465904021 3579 dbSNP
rs1186566741 3580 dbSNP
rs1204211129 3580 dbSNP
rs1178067920 3584 dbSNP
rs1426645243 3584 dbSNP
rs1462638072 3586 dbSNP
rs1469062408 3587 dbSNP
rs1176005813 3598 dbSNP
rs762321182 3604 dbSNP
rs189028737 3608 dbSNP
rs1289511690 3612 dbSNP
rs982021654 3624 dbSNP
rs1018104221 3640 dbSNP
rs1304003874 3642 dbSNP
rs1351161802 3646 dbSNP
rs1223261423 3654 dbSNP
rs1260914620 3657 dbSNP
rs1005415795 3677 dbSNP
rs1242167362 3686 dbSNP
rs1259638551 3711 dbSNP
rs1484567886 3721 dbSNP
rs1192880166 3738 dbSNP
rs888334279 3743 dbSNP
rs1269448121 3745 dbSNP
rs950214960 3747 dbSNP
rs1047423905 3749 dbSNP
rs1196978683 3754 dbSNP
rs1315199999 3770 dbSNP
rs1455021658 3771 dbSNP
rs769314225 3778 dbSNP
rs762201474 3779 dbSNP
rs184611409 3782 dbSNP
rs775650193 3785 dbSNP
rs957424187 3806 dbSNP
rs761880522 3819 dbSNP
rs1401588429 3830 dbSNP
rs751022455 3852 dbSNP
rs12687103 3855 dbSNP
rs193056343 3866 dbSNP
rs1366703847 3872 dbSNP
rs763705121 3876 dbSNP
rs1281754278 3879 dbSNP
rs1352649809 3881 dbSNP
rs906205219 3893 dbSNP
rs886311590 3899 dbSNP
rs1314634772 3900 dbSNP
rs779145515 3904 dbSNP
rs1385922801 3915 dbSNP
rs1292460947 3919 dbSNP
rs1185545728 3924 dbSNP
rs1447769478 3926 dbSNP
rs1026545633 3932 dbSNP
rs1220087224 3933 dbSNP
rs373799714 3942 dbSNP
rs1253715152 3946 dbSNP
rs1470367993 3962 dbSNP
rs1246066941 3973 dbSNP
rs34514670 3980 dbSNP
rs994573125 3985 dbSNP
rs947808204 3989 dbSNP
rs35097288 3993 dbSNP
rs898888481 3995 dbSNP
rs189242424 4001 dbSNP
rs916077569 4006 dbSNP
rs1447297126 4010 dbSNP
rs1055940193 4020 dbSNP
rs1424595868 4025 dbSNP
rs937641052 4030 dbSNP
rs936171123 4032 dbSNP
rs1286166972 4035 dbSNP
rs35562085 4038 dbSNP
rs866045354 4039 dbSNP
rs747957967 4040 dbSNP
rs1443319313 4043 dbSNP
rs34466486 4045 dbSNP
rs1297300276 4047 dbSNP
rs1370685112 4048 dbSNP
rs35684047 4056 dbSNP
rs780898237 4058 dbSNP
rs34076681 4059 dbSNP
rs1046017170 4076 dbSNP
rs1292090421 4110 dbSNP
rs1315121371 4129 dbSNP
rs1358021630 4137 dbSNP
rs34920781 4138 dbSNP
rs1247469443 4146 dbSNP
rs754957392 4155 dbSNP
rs950347392 4159 dbSNP
rs1362415946 4162 dbSNP
rs143535001 4183 dbSNP
rs1203515454 4184 dbSNP
rs183002450 4188 dbSNP
rs922631469 4189 dbSNP
rs1328546467 4204 dbSNP
rs1053269333 4211 dbSNP
rs1444047646 4212 dbSNP
rs775239508 4213 dbSNP
rs769592478 4216 dbSNP
rs761062068 4223 dbSNP
rs925986781 4227 dbSNP
rs1410919976 4231 dbSNP
rs1427836998 4238 dbSNP
rs773714871 4245 dbSNP
rs1170184214 4262 dbSNP
rs757889611 4263 dbSNP
rs2488719 4266 dbSNP
rs964775461 4281 dbSNP
rs1025530783 4290 dbSNP
rs1347048596 4293 dbSNP
rs772450826 4299 dbSNP
rs1167257530 4302 dbSNP
rs1475728805 4305 dbSNP
rs1213830997 4312 dbSNP
rs911878555 4316 dbSNP
rs1243601474 4321 dbSNP
rs1270633933 4324 dbSNP
rs2488718 4325 dbSNP
rs1313670797 4330 dbSNP
rs994519645 4334 dbSNP
rs906179965 4335 dbSNP
rs950676907 4335 dbSNP
rs191993941 4336 dbSNP
rs765008441 4337 dbSNP
rs1476019951 4349 dbSNP
rs2449868 4355 dbSNP
rs1490130906 4371 dbSNP
rs1167785502 4378 dbSNP
rs1269079243 4388 dbSNP
rs2488717 4392 dbSNP
rs1471132156 4393 dbSNP
rs1224253778 4396 dbSNP
rs1176769494 4397 dbSNP
rs1011928245 4409 dbSNP
rs1467832572 4419 dbSNP
rs1339436662 4425 dbSNP
rs1326439360 4431 dbSNP
rs894859175 4436 dbSNP
rs994604343 4439 dbSNP
rs1215648682 4444 dbSNP
rs1342139679 4445 dbSNP
rs963102511 4450 dbSNP
rs1033357390 4459 dbSNP
rs1041957681 4460 dbSNP
rs1001904322 4462 dbSNP
rs187526697 4478 dbSNP
rs777136529 4484 dbSNP
rs946332415 4503 dbSNP
rs922599035 4506 dbSNP
rs906240486 4512 dbSNP
rs1046469788 4518 dbSNP
rs764491331 4540 dbSNP
rs1200592049 4542 dbSNP
rs1346556700 4547 dbSNP
rs1428231280 4548 dbSNP
rs1479257713 4552 dbSNP
rs1159867333 4560 dbSNP
rs1385094127 4563 dbSNP
rs1399566677 4565 dbSNP
rs911281306 4570 dbSNP
rs1305118495 4578 dbSNP
rs984622973 4582 dbSNP
rs761085407 4591 dbSNP
rs1405403661 4594 dbSNP
rs1025922247 4595 dbSNP
rs1343349550 4604 dbSNP
rs1411758884 4605 dbSNP
rs892014904 4618 dbSNP
rs182575965 4620 dbSNP
rs972672303 4623 dbSNP
rs1281440370 4630 dbSNP
rs1351557216 4646 dbSNP
rs970665932 4650 dbSNP
rs1282847637 4656 dbSNP
rs1490979393 4657 dbSNP
rs1174198915 4660 dbSNP
rs1053282547 4676 dbSNP
rs1479948834 4678 dbSNP
rs1479636102 4679 dbSNP
rs772598561 4685 dbSNP
rs1011897076 4700 dbSNP
rs1469219679 4708 dbSNP
rs1201115758 4720 dbSNP
rs1387075873 4748 dbSNP
rs936119656 4750 dbSNP
rs1425238227 4759 dbSNP
rs1302396900 4762 dbSNP
rs1363509895 4768 dbSNP
rs1479480367 4770 dbSNP
rs1231789700 4774 dbSNP
rs745981948 4775 dbSNP
rs1336571178 4780 dbSNP
rs144695503 4781 dbSNP
rs1307191930 4797 dbSNP
rs771146745 4805 dbSNP
rs943427416 4814 dbSNP
rs1032082010 4829 dbSNP
rs911924724 4832 dbSNP
rs191488036 4843 dbSNP
rs1226764003 4847 dbSNP
rs185898722 4850 dbSNP
rs1250881826 4875 dbSNP
rs1436851456 4881 dbSNP
rs1280382143 4882 dbSNP
rs1244449227 4887 dbSNP
rs397973476 4887 dbSNP
rs754798008 4887 dbSNP
rs1162906629 4889 dbSNP
rs950680844 4896 dbSNP
rs182968805 4897 dbSNP
rs779907608 4902 dbSNP
rs1469276597 4903 dbSNP
rs1395428516 4904 dbSNP
rs1391040464 4921 dbSNP
rs904689322 4922 dbSNP
rs1406509906 4925 dbSNP
rs1453448239 4929 dbSNP
rs963218343 4954 dbSNP
rs1315020134 4956 dbSNP
rs1042314731 4973 dbSNP
rs1178378685 4976 dbSNP
rs749393172 4981 dbSNP
rs1230155458 4983 dbSNP
rs946245408 4990 dbSNP
rs901393446 4992 dbSNP
rs1406730458 5002 dbSNP
rs1177441955 5006 dbSNP
rs191962611 5008 dbSNP
rs1244575274 5018 dbSNP
rs1461410094 5022 dbSNP
rs1470842616 5024 dbSNP
rs1033473607 5027 dbSNP
rs1001984079 5033 dbSNP
rs1240802779 5037 dbSNP
rs1041297961 5039 dbSNP
rs970871460 5043 dbSNP
rs1462194453 5046 dbSNP
rs911250436 5074 dbSNP
rs56287307 5076 dbSNP
rs1168867478 5087 dbSNP
rs780195482 5088 dbSNP
rs1408537959 5096 dbSNP
rs931427164 5096 dbSNP
rs149788588 5108 dbSNP
rs918419201 5121 dbSNP
rs892053768 5131 dbSNP
rs1316708023 5137 dbSNP
rs1384427472 5143 dbSNP
rs1053398150 5149 dbSNP
rs972940200 5149 dbSNP
rs1217148990 5164 dbSNP
rs970569119 5170 dbSNP
rs1225750516 5171 dbSNP
rs756979902 5186 dbSNP
rs1202576701 5187 dbSNP
rs1314514255 5193 dbSNP
rs990765257 5198 dbSNP
rs1451782738 5211 dbSNP
rs959011325 5219 dbSNP
rs1260926437 5224 dbSNP
rs1476743471 5226 dbSNP
rs1032465000 5240 dbSNP
rs1000445715 5243 dbSNP
rs750217208 5244 dbSNP
rs1338651640 5246 dbSNP
rs1175888838 5247 dbSNP
rs1357532997 5270 dbSNP
rs753600308 5273 dbSNP
rs1039204133 5287 dbSNP
rs763831058 5289 dbSNP
rs760983911 5296 dbSNP
rs1384867579 5298 dbSNP
rs3178637 5300 dbSNP
rs1398599700 5302 dbSNP
rs1285596168 5310 dbSNP
rs890511185 5315 dbSNP
rs1402144455 5324 dbSNP
rs1382831183 5332 dbSNP
rs1182399994 5351 dbSNP
rs781101968 5359 dbSNP
rs929266679 5365 dbSNP
rs753080889 5368 dbSNP
rs767931820 5371 dbSNP
rs901360758 5378 dbSNP
rs973335590 5381 dbSNP
rs1485741876 5383 dbSNP
rs941936184 5387 dbSNP
rs1487261855 5418 dbSNP
rs1261738460 5423 dbSNP
rs926486922 5426 dbSNP
rs139796596 5433 dbSNP
rs1357604073 5441 dbSNP
rs1190852537 5442 dbSNP
rs1291363197 5443 dbSNP
rs942978091 5445 dbSNP
rs889780931 5447 dbSNP
rs757117451 5450 dbSNP
rs751553735 5455 dbSNP
rs763964699 5472 dbSNP
rs1048907166 5480 dbSNP
rs1361701806 5488 dbSNP
rs931336954 5490 dbSNP
rs1366604734 5494 dbSNP
rs150654419 5500 dbSNP
rs771056757 5515 dbSNP
rs1031992523 5516 dbSNP
rs1223914932 5520 dbSNP
rs1305692866 5524 dbSNP
rs1000476518 5525 dbSNP
rs1248122029 5529 dbSNP
rs1292346263 5534 dbSNP
rs949187469 5535 dbSNP
rs763018553 5536 dbSNP
rs1245261143 5543 dbSNP
rs187654268 5544 dbSNP
rs1481748397 5584 dbSNP
rs917779821 5593 dbSNP
rs1289280208 5601 dbSNP
rs1432421102 5609 dbSNP
rs1237676676 5610 dbSNP
rs1437850860 5613 dbSNP
rs770037906 5616 dbSNP
rs79318886 5617 dbSNP
rs1405213571 5619 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aguguucacuucaUCACCCu 5'
                       |||||| 
Target 5' -------ggccgaAGUGGGa 3'
1 - 13
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000372487.1 | 3UTR | GGCCGAAGUGGGAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
83 hsa-miR-4301 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT081134 LDLR low density lipoprotein receptor 2 4
MIRT090911 ARHGEF26 Rho guanine nucleotide exchange factor 26 2 2
MIRT229436 MECP2 methyl-CpG binding protein 2 2 2
MIRT274717 CPSF6 cleavage and polyadenylation specific factor 6 2 2
MIRT350957 BACH1 BTB domain and CNC homolog 1 2 2
MIRT386722 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT446022 PEX3 peroxisomal biogenesis factor 3 2 2
MIRT481303 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 14
MIRT483959 ZNF354B zinc finger protein 354B 2 6
MIRT495667 TUBAL3 tubulin alpha like 3 2 2
MIRT496554 TBX15 T-box 15 2 2
MIRT497702 ARL6IP6 ADP ribosylation factor like GTPase 6 interacting protein 6 2 2
MIRT498105 RMND5A required for meiotic nuclear division 5 homolog A 2 2
MIRT512535 SEMA4D semaphorin 4D 2 2
MIRT512556 MFN2 mitofusin 2 2 6
MIRT521465 RABGAP1 RAB GTPase activating protein 1 2 6
MIRT526236 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT526743 HLA-DOB major histocompatibility complex, class II, DO beta 2 2
MIRT527578 BRD7 bromodomain containing 7 2 4
MIRT528038 WT1 Wilms tumor 1 2 2
MIRT528267 GPRIN2 G protein regulated inducer of neurite outgrowth 2 2 2
MIRT528505 HTR7 5-hydroxytryptamine receptor 7 2 4
MIRT528758 RPS27 ribosomal protein S27 2 6
MIRT528999 IPO9 importin 9 2 2
MIRT529701 MRPL30 mitochondrial ribosomal protein L30 2 2
MIRT529781 C17orf82 chromosome 17 open reading frame 82 2 2
MIRT533797 TMEM119 transmembrane protein 119 2 6
MIRT535308 PHF12 PHD finger protein 12 2 2
MIRT535917 MKL2 MKL1/myocardin like 2 2 2
MIRT544892 OSBPL1A oxysterol binding protein like 1A 2 2
MIRT555423 PPIC peptidylprolyl isomerase C 2 2
MIRT562068 KLHL15 kelch like family member 15 2 2
MIRT565623 SLC31A1 solute carrier family 31 member 1 2 2
MIRT565661 SIX1 SIX homeobox 1 2 2
MIRT570138 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT571045 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT621232 LMAN1 lectin, mannose binding 1 2 2
MIRT622272 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT623844 GAN gigaxonin 2 2
MIRT626158 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626464 CMKLR1 chemerin chemokine-like receptor 1 2 2
MIRT632087 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT637243 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT642710 FGFR1OP2 FGFR1 oncogene partner 2 2 2
MIRT643611 KANSL3 KAT8 regulatory NSL complex subunit 3 2 2
MIRT644270 PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 2 2
MIRT645470 SPIN3 spindlin family member 3 2 2
MIRT649193 DNPEP aspartyl aminopeptidase 2 2
MIRT650776 POP4 POP4 homolog, ribonuclease P/MRP subunit 2 2
MIRT651345 ZC2HC1C zinc finger C2HC-type containing 1C 2 2
MIRT652237 TRAPPC3L trafficking protein particle complex 3 like 2 2
MIRT652587 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT654591 PURA purine rich element binding protein A 2 2
MIRT654649 PTAFR platelet activating factor receptor 2 2
MIRT656842 KLF7 Kruppel like factor 7 2 2
MIRT657209 IKZF2 IKAROS family zinc finger 2 2 2
MIRT658513 ETV3 ETS variant 3 2 2
MIRT659448 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT668816 CYLD CYLD lysine 63 deubiquitinase 2 2
MIRT669067 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 2
MIRT677711 ELOF1 elongation factor 1 homolog 2 4
MIRT687146 PTPN12 protein tyrosine phosphatase, non-receptor type 12 2 2
MIRT698498 THOC2 THO complex 2 2 2
MIRT707930 PPP1R3D protein phosphatase 1 regulatory subunit 3D 4 2
MIRT708737 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT710031 POLL DNA polymerase lambda 2 2
MIRT712175 STK4 serine/threonine kinase 4 2 2
MIRT715297 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT716892 AGPAT6 glycerol-3-phosphate acyltransferase 4 2 2
MIRT717378 RBM41 RNA binding motif protein 41 2 2
MIRT718082 CLIC5 chloride intracellular channel 5 2 2
MIRT718721 ANKRD18A ankyrin repeat domain 18A 2 2
MIRT719152 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT719224 CAMK4 calcium/calmodulin dependent protein kinase IV 2 2
MIRT719528 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT719861 KLF2 Kruppel like factor 2 2 2
MIRT720326 CAMK2G calcium/calmodulin dependent protein kinase II gamma 2 2
MIRT721596 SREBF1 sterol regulatory element binding transcription factor 1 2 2
MIRT722020 NEBL nebulette 2 2
MIRT722484 QSOX1 quiescin sulfhydryl oxidase 1 2 2
MIRT722614 TEAD1 TEA domain transcription factor 1 2 2
MIRT723664 RPTN repetin 2 2
MIRT723939 SVOP SV2 related protein 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4301 Cisplatin 5460033 NSC119875 approved sensitive High Hepatocellular Carcinoma cell line (Hep3B, 97L)
hsa-miR-4301 Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-mir-4301 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-mir-4301 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-4301 Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-4301 Methotrexate 126941 NSC740 approved sensitive cell line (W1)
hsa-mir-4301 Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-miR-4301 Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4301 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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