pre-miRNA Information
pre-miRNA hsa-mir-23a   
Genomic Coordinates chr19: 13836587 - 13836659
Synonyms MIRN23A, hsa-mir-23a, miRNA23A, MIR23A
Description Homo sapiens miR-23a stem-loop
Comment This miRNA was previously named miR-23 . This finding was later retracted after the discovery that the regulated gene was human homolog of ES1 (HES1), whose function is unknown.
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-23a-5p
Sequence 9| GGGGUUCCUGGGGAUGGGAUUU |30
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs748509260 12 dbSNP
rs1205403719 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NIPAL2   
Synonyms NPAL2
Description NIPA like domain containing 2
Transcript NM_024759   
Expression
Putative miRNA Targets on NIPAL2
3'UTR of NIPAL2
(miRNA target sites are highlighted)
>NIPAL2|NM_024759|3'UTR
   1 CTTATCCTATGGAACTTTGCCTGATGGAAGTGACTCAACAAAGAGCCAAAGTGGAGAGAAGAAAGAGGTCTAAATGCTGA
  81 GAAGGATGGCTGTTGGCCTGTTATTCGATACCACCTTTTTAAAAAATTGCACATGTTCAATTTGTGTCAGCAGCTCTTTT
 161 ATAAGCTAACATGTGCTAGCATTCATTTCAGTCCTTTCCCCCACCTCAGCGTCTATGGACAATCGGGGACTTCCTAAGCT
 241 CTGACAGTCTAATATTTCCATGGAATGTGATTTGGAGTGTTCCCCACACCCTGGACCTCTCCCTAGTGATTATCTAGCCA
 321 GCTACACCTTACTCAGAGCCCGGCTGCTCTAGCAGGAATGTTGCACAGAAACATACATTTGCGGTTTGGCCACAGGTCGC
 401 ATAGGTGGCTTCTCCCACGGGTAGTGTCAGTTGCTTCACTTTAAAAAGTCACTTCAGCCCCACAACCTCACTCCCAAAAG
 481 AAAGGTTTGAGAGCGCTCATTTTTTTTCTAAGACACCTTTTATAAGCCTCCCTATAAAAATCTCACCTTTCAAGTACTAA
 561 GTTAGAATTGCAAGTCATCTTTTCTGAAAACTAATGCTATCAAAGTCCTCCTTTGAAAATTAAGGGTCTCTTTAAAATTA
 641 GAATTTATAAATGGCATTCAGTGATAGTGTACACCAAAATTAAAAGACCTTGACTGGTGGGCTTTTTACGTGTAAGGAAG
 721 AGGAAGTTTAAGAAGTAGGACTCTGCTTGTTTCAGTAGCCCATGTACTAAAATAGGAACAATGCAGAGATTAGCACAGCC
 801 CCTGCACAAGGCTGACACATAAATTCATGAAGCGTTAGAGACAAAAAGTAGGACTAATGTTTGTTTATTTTTTAATAAAA
 881 ATCTAGAATGGTGATGTTTTCTTCAGCTGTATGATTCTATCATACTTGAAACTGAAGAAAAATTTAATATCCTATGTCTT
 961 TTTTATAGATCTTATAATTTATCAAGTGGATTTATATGTCTTATTCTCCATATAAGTCTAAAAAATCACATTTAAATTCT
1041 TAGTGATAGTTTCACTACACATCATTTCTTCCCAAAGTCATTACCTCAAGCTTTGTAAATTCTTCTAGATAAAAGGAGAG
1121 TTGTGATTAGAGAACTGAATTTCAGCCATTTAAACCTGTAGACATAGAAAACAACCCAGTGGTCAAACCTGAGCTTCAAG
1201 AGGAAGCCCAAGTCCTCCTGTTTCCTGAATGGCTTTTCCACTCCAATTCATCACATATCTGCTAAGACACATTTGCAGGT
1281 AGAATCCATAATAATATCTGTTATTTATGATCTACCTAATATTTAAAGGAGAAGAAAAGAAGTAGCCTTCGTTGCAGCCA
1361 ACATCCAACAATAAGTCCCACCCTTAATGACATTTCAAAGCCTTCAGATCACTTCTGACATGTCTGTCCAATATCATTCC
1441 AATCAATAGTCTTGCATTTAAATAGGTTGTTTAACTCGGTGGTATTGAGACTGTAACCTTAATGGCTCAGGTCTTTTAGC
1521 TTTGTTCTTTGTCATAATCTGCACTCCTGGCCAGACTGACCAAACCTGGCTGCAAAGGAAAGAGATTTGAATTGATCACC
1601 AATGTATGAAAAATACAGAACCCATGTCTGGCTCCTAAACTCCTGGTAATAATTCCCGCCATCGTAGCAAGTGTCCCATG
1681 CATTCAGATAAAGCAGTCATAATTTATGGTGTATTTTACCGAATTGGTCCAGCATATTGGTCCTACAAGGCTCAGCCAAG
1761 AAATGTATCTGGTGCCTTAAACTACAGATTTCTGGTGACTCTTAAAACTGGTTTACAAAGATTGAGAAAACAATTAGATT
1841 GAAGAGTTTTGCTTCAAGTAGACCTGCATTCATAGCTAGAGTGCATGAGATTTTCAGCACTGTAGAATTTCACACAGGCA
1921 CAAGCATAACACCAGTACTTTAGCAGCCGCCAACAGTTGCATCTATTAAACGTTTTGAGAAATGACATTGACTTATGCAC
2001 ATTTAAGCAATCAACAATGTTTTAGAAGTCCAGGTAACATATAAAATATATTCAGACCTAGTTTTACTTTCCATATTGTT
2081 GCTCCAAAGTAAGGTAAATAGGAGTTTTAGTTGTACTGGCCTGTAAGATTTTTTAAATTACACAGTGCATGACAACAACT
2161 AAAGCCAACTCAGTCCTTCTCTTGGCATTGTGAGTTGAGGACCTTTAGCCAACTGTTAGCTCATCTGACTATCTGTCTAG
2241 ACCAAGGGTCGGCAAAGTTTTCAGTAAAGACCCACAGAGTACATATTTTGGAGTTTGTGTTGTCTGTACCAACAGACAGA
2321 CATGGTGTCTGTCCCAACTACCCAACTCTGCCATTGTAGCACTAAAGCAGCCATAGACAAGATGTAAACAGAAGAGCATG
2401 GCTGTGTTCCAGTAAAACTTTATTTACAGGCCAGGCATGGTGGCTCATGCCTGTAATCCCAGCACTCTGGGAGGCTGAGG
2481 CTGACAGATCATCTGAGGTTAGGAGTTTGGGACCAGCCTGGTCAACATAGTGAAACCCCATCTCTACTAAAAGTACAAAA
2561 ATTAGCCAGGCATGACGGTGGGTGCCTGGAGTCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAG
2641 GTGGAGGTTGCAGTGAGCCGAGATCATGCCATTGCACTCCAGCCTGGGCGACAGAGTAAGACTGTCTCAAAAACAAACAA
2721 ACAAACAAACAAACAAAAACAAGTGGCCAGTCTGTGAGCTATAGTTCCCAACACCTGGTCTAGACTCTTCTGCCCTTGCT
2801 CTGCAGCTTCTTTCCTGTTGATTGGGCATTCAGGGAAGGAGTTTAAAAAGTGACACTCATGGCTCATGACAAATGAGATA
2881 CTTTGGGAGTGTGGAAACATGGCTTGATATTTGCCTTCAGATATTTTTGCTTATATAAGTTCTAAATGGAAGTGATAAGT
2961 TCATTCTTAGGGTCCAAGTTGAAAGGCAGTGGTTCTTTTGTGAACACCACTAACTACATTCGAAAAGCCTCTCCAATTCC
3041 ACATTCCAAGTCTATAACAGCTTTGGAAATGAGTAACAATGACCTCTCATGTAGTAGATTAAAGCAGAGGCCTTTGCCAT
3121 ATGATTGTTTTTTGGCTTAAATGTTTGCTTGCCCTGTAACTGTAATACTTTGGTTACCAGAATCACTTGAAAACAAATAC
3201 AATAAAAAAATTTCTCAAGCAGTGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuuaGGGUAGGGGUCCUUGGGg 5'
              |::||||:  |||||:: 
Target 5' ----CTTATCCTATGGAACTTt 3'
1 - 18 130.00 -16.40
2
miRNA  3' uuUAGGGUAGGGG---UCCUUGGGg 5'
            | |: | |::|   ||||| || 
Target 5' aaACCTGAGCTTCAAGAGGAAGCCc 3'
1185 - 1209 120.00 -17.00
3
miRNA  3' uuuaggguaggggucCUUGGGg 5'
                         |||||| 
Target 5' tgtatgaaaaatacaGAACCCa 3'
1603 - 1624 120.00 -10.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30106767 1 COSMIC
COSN30135420 14 COSMIC
COSN5030207 43 COSMIC
COSN31545733 55 COSMIC
COSN31966522 58 COSMIC
COSN31507340 92 COSMIC
COSN30100938 106 COSMIC
COSN30131046 107 COSMIC
COSN30494377 120 COSMIC
COSN30503405 127 COSMIC
COSN28865492 198 COSMIC
COSN31516243 205 COSMIC
COSN31598937 210 COSMIC
COSN30540306 218 COSMIC
COSN31541693 322 COSMIC
COSN26400913 949 COSMIC
COSN27988830 1125 COSMIC
COSN18905027 1309 COSMIC
COSN22612259 1312 COSMIC
COSN24458453 1582 COSMIC
COSN32063603 1826 COSMIC
COSN21009596 2053 COSMIC
COSN9273345 2255 COSMIC
COSN156264 2333 COSMIC
COSN2300648 2647 COSMIC
COSN9273344 2806 COSMIC
COSN23840400 2875 COSMIC
COSN28256627 3214 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs764956877 1 dbSNP
rs757209970 4 dbSNP
rs180849759 9 dbSNP
rs1192447995 10 dbSNP
rs1481074559 15 dbSNP
rs1244420426 20 dbSNP
rs1182063186 23 dbSNP
rs1288962269 24 dbSNP
rs1410288727 27 dbSNP
rs1200411745 30 dbSNP
rs1218331725 32 dbSNP
rs561453780 39 dbSNP
rs369076771 40 dbSNP
rs1221901209 43 dbSNP
rs775625452 45 dbSNP
rs1275313099 48 dbSNP
rs540816475 56 dbSNP
rs759764157 58 dbSNP
rs968218993 60 dbSNP
rs1020724649 65 dbSNP
rs1421732080 67 dbSNP
rs988198854 68 dbSNP
rs1361459731 69 dbSNP
rs774867423 70 dbSNP
rs527990596 88 dbSNP
rs1427709183 91 dbSNP
rs1192210029 92 dbSNP
rs749839615 95 dbSNP
rs375403238 96 dbSNP
rs770325718 98 dbSNP
rs746572381 100 dbSNP
rs779552919 101 dbSNP
rs565620019 106 dbSNP
rs575336495 107 dbSNP
rs757085139 111 dbSNP
rs753646685 112 dbSNP
rs763995160 120 dbSNP
rs1321393826 123 dbSNP
rs1288820989 127 dbSNP
rs138418912 130 dbSNP
rs576339039 139 dbSNP
rs370441001 148 dbSNP
rs543073300 154 dbSNP
rs957248502 155 dbSNP
rs898563866 163 dbSNP
rs3735885 168 dbSNP
rs746574980 173 dbSNP
rs940025010 177 dbSNP
rs965189372 178 dbSNP
rs1161610166 183 dbSNP
rs554320842 185 dbSNP
rs891126507 186 dbSNP
rs1422332470 187 dbSNP
rs1167155081 192 dbSNP
rs1019035141 210 dbSNP
rs1401337317 215 dbSNP
rs1424622239 221 dbSNP
rs534552918 224 dbSNP
rs145745876 225 dbSNP
rs921081451 231 dbSNP
rs17358339 233 dbSNP
rs772992173 239 dbSNP
rs771987990 243 dbSNP
rs1262089953 252 dbSNP
rs1229733865 259 dbSNP
rs1315308134 263 dbSNP
rs1340941645 280 dbSNP
rs759252900 282 dbSNP
rs578232317 289 dbSNP
rs1440092602 291 dbSNP
rs111321772 292 dbSNP
rs1205804877 297 dbSNP
rs1237321625 302 dbSNP
rs1482477230 305 dbSNP
rs960328338 306 dbSNP
rs765399494 311 dbSNP
rs1386107725 317 dbSNP
rs1449037340 328 dbSNP
rs770511480 337 dbSNP
rs569602641 341 dbSNP
rs1232651000 342 dbSNP
rs553279949 344 dbSNP
rs1304578852 349 dbSNP
rs796241874 351 dbSNP
rs1434789637 356 dbSNP
rs906661899 362 dbSNP
rs981667605 367 dbSNP
rs1364039122 374 dbSNP
rs970281215 376 dbSNP
rs1023247199 377 dbSNP
rs777243667 382 dbSNP
rs539055293 383 dbSNP
rs1310895535 386 dbSNP
rs1205991010 390 dbSNP
rs1431837116 391 dbSNP
rs1358583243 392 dbSNP
rs1171863929 398 dbSNP
rs536324758 399 dbSNP
rs1436451992 401 dbSNP
rs1243976929 402 dbSNP
rs1475780751 416 dbSNP
rs898704838 418 dbSNP
rs767645659 419 dbSNP
rs567418301 426 dbSNP
rs548001947 445 dbSNP
rs1016057905 450 dbSNP
rs1004259753 458 dbSNP
rs988465745 467 dbSNP
rs1435142175 470 dbSNP
rs891095337 488 dbSNP
rs935941165 493 dbSNP
rs925850801 494 dbSNP
rs1207133985 495 dbSNP
rs1051062631 496 dbSNP
rs1448880082 497 dbSNP
rs932676807 507 dbSNP
rs536898818 508 dbSNP
rs964584201 508 dbSNP
rs4735538 513 dbSNP
rs1455445405 516 dbSNP
rs1160024415 518 dbSNP
rs987593352 521 dbSNP
rs1212442929 524 dbSNP
rs1043682079 526 dbSNP
rs950785142 530 dbSNP
rs1332296908 534 dbSNP
rs1407360929 536 dbSNP
rs1284479479 538 dbSNP
rs1348030172 540 dbSNP
rs1226961308 541 dbSNP
rs1281588921 543 dbSNP
rs571873634 554 dbSNP
rs4734392 556 dbSNP
rs1227416960 558 dbSNP
rs4734391 561 dbSNP
rs1490858628 570 dbSNP
rs1052156215 576 dbSNP
rs1298194964 585 dbSNP
rs1251000949 592 dbSNP
rs1471539832 595 dbSNP
rs1183760665 602 dbSNP
rs939102501 606 dbSNP
rs1364127791 607 dbSNP
rs927723613 608 dbSNP
rs899463376 611 dbSNP
rs755280922 614 dbSNP
rs1366971870 620 dbSNP
rs1424751667 620 dbSNP
rs1306811483 636 dbSNP
rs1355085857 645 dbSNP
rs980422746 648 dbSNP
rs1311100134 653 dbSNP
rs747544733 654 dbSNP
rs969117663 660 dbSNP
rs1408499858 670 dbSNP
rs1331344696 686 dbSNP
rs1416666980 692 dbSNP
rs562884605 694 dbSNP
rs1376193494 702 dbSNP
rs140661937 710 dbSNP
rs541487973 711 dbSNP
rs529343336 713 dbSNP
rs963166959 734 dbSNP
rs560252139 736 dbSNP
rs866588342 745 dbSNP
rs1482054689 764 dbSNP
rs188119210 766 dbSNP
rs906713719 768 dbSNP
rs571861003 773 dbSNP
rs1046974180 798 dbSNP
rs1185057823 799 dbSNP
rs955437699 806 dbSNP
rs1029729528 808 dbSNP
rs1167452115 814 dbSNP
rs1387753745 818 dbSNP
rs72680653 819 dbSNP
rs891546343 833 dbSNP
rs545274765 834 dbSNP
rs935658163 836 dbSNP
rs576289159 844 dbSNP
rs1485707722 848 dbSNP
rs1385299344 849 dbSNP
rs556124305 853 dbSNP
rs1250515073 854 dbSNP
rs1010837017 858 dbSNP
rs535912079 866 dbSNP
rs1340122186 867 dbSNP
rs1229608116 871 dbSNP
rs892271186 873 dbSNP
rs1251822169 890 dbSNP
rs567280082 891 dbSNP
rs1195663839 892 dbSNP
rs553856540 901 dbSNP
rs1479952698 906 dbSNP
rs1198540167 912 dbSNP
rs1052249921 919 dbSNP
rs939197242 925 dbSNP
rs1461524612 928 dbSNP
rs1187521233 932 dbSNP
rs532596768 937 dbSNP
rs1245734853 948 dbSNP
rs533897456 951 dbSNP
rs911753143 956 dbSNP
rs1291645191 959 dbSNP
rs1374162274 963 dbSNP
rs1235431370 966 dbSNP
rs987698157 968 dbSNP
rs1174773702 969 dbSNP
rs950836492 971 dbSNP
rs1470458180 975 dbSNP
rs1044878068 984 dbSNP
rs947673595 990 dbSNP
rs1356166576 993 dbSNP
rs1384008952 999 dbSNP
rs1296328698 1006 dbSNP
rs758513813 1013 dbSNP
rs1323980154 1016 dbSNP
rs569343786 1016 dbSNP
rs1398571927 1026 dbSNP
rs1298722862 1031 dbSNP
rs1265860067 1057 dbSNP
rs963354624 1060 dbSNP
rs1186624565 1061 dbSNP
rs1266014569 1065 dbSNP
rs1433162889 1072 dbSNP
rs1197874766 1077 dbSNP
rs377254030 1094 dbSNP
rs571836851 1095 dbSNP
rs1460711595 1102 dbSNP
rs1392100384 1117 dbSNP
rs184917331 1120 dbSNP
rs1158815402 1121 dbSNP
rs1343676217 1123 dbSNP
rs1475333328 1132 dbSNP
rs1410510637 1135 dbSNP
rs372760978 1141 dbSNP
rs1002476502 1143 dbSNP
rs1390082195 1164 dbSNP
rs1403092775 1171 dbSNP
rs369247831 1175 dbSNP
rs1025167502 1182 dbSNP
rs1010149510 1191 dbSNP
rs892601146 1202 dbSNP
rs1318392874 1203 dbSNP
rs1216034254 1208 dbSNP
rs1253246866 1220 dbSNP
rs1487215846 1222 dbSNP
rs1052865735 1225 dbSNP
rs1196934465 1242 dbSNP
rs1481022285 1243 dbSNP
rs908820695 1249 dbSNP
rs1181948890 1253 dbSNP
rs982899265 1254 dbSNP
rs904209689 1261 dbSNP
rs1271734403 1270 dbSNP
rs1368041535 1273 dbSNP
rs1422831859 1276 dbSNP
rs955571044 1279 dbSNP
rs1367498968 1288 dbSNP
rs569496668 1289 dbSNP
rs1039092391 1305 dbSNP
rs911790423 1321 dbSNP
rs1225766279 1322 dbSNP
rs1271798183 1333 dbSNP
rs1051642983 1336 dbSNP
rs62522244 1341 dbSNP
rs996889242 1346 dbSNP
rs919057337 1348 dbSNP
rs529207236 1350 dbSNP
rs560115071 1351 dbSNP
rs1011349088 1354 dbSNP
rs892371630 1359 dbSNP
rs1363776048 1361 dbSNP
rs1480755828 1363 dbSNP
rs1368433624 1373 dbSNP
rs1178643412 1382 dbSNP
rs926666119 1385 dbSNP
rs1443826294 1389 dbSNP
rs866731545 1392 dbSNP
rs746195132 1419 dbSNP
rs1383831543 1423 dbSNP
rs1003376533 1424 dbSNP
rs1169834144 1432 dbSNP
rs971045746 1437 dbSNP
rs1444621730 1447 dbSNP
rs192417390 1451 dbSNP
rs1382457890 1455 dbSNP
rs1453875525 1459 dbSNP
rs767574454 1465 dbSNP
rs1340673852 1467 dbSNP
rs1212226732 1477 dbSNP
rs956873771 1478 dbSNP
rs947840006 1481 dbSNP
rs1206151587 1484 dbSNP
rs189122363 1487 dbSNP
rs1460670653 1493 dbSNP
rs779443981 1496 dbSNP
rs1183988174 1506 dbSNP
rs1183158351 1508 dbSNP
rs1454222900 1509 dbSNP
rs1251456961 1511 dbSNP
rs1185919535 1513 dbSNP
rs1195916743 1519 dbSNP
rs565070955 1525 dbSNP
rs1174170206 1527 dbSNP
rs904259171 1531 dbSNP
rs1470473573 1534 dbSNP
rs1339107928 1536 dbSNP
rs1363546787 1539 dbSNP
rs1430622260 1540 dbSNP
rs1271329885 1542 dbSNP
rs1017304527 1551 dbSNP
rs1352933595 1552 dbSNP
rs398095993 1570 dbSNP
rs78526214 1570 dbSNP
rs940378053 1570 dbSNP
rs1261395866 1571 dbSNP
rs1233401458 1572 dbSNP
rs1322411486 1572 dbSNP
rs1203982880 1589 dbSNP
rs1264758106 1592 dbSNP
rs1445116063 1597 dbSNP
rs754332207 1599 dbSNP
rs1242665125 1616 dbSNP
rs1305307908 1621 dbSNP
rs1167262061 1625 dbSNP
rs1441322780 1639 dbSNP
rs908789555 1640 dbSNP
rs983033652 1641 dbSNP
rs934121640 1645 dbSNP
rs185208987 1647 dbSNP
rs1178921395 1649 dbSNP
rs774044495 1651 dbSNP
rs1383628829 1655 dbSNP
rs964143490 1657 dbSNP
rs1022831348 1658 dbSNP
rs1347480662 1662 dbSNP
rs1280805423 1663 dbSNP
rs374704746 1664 dbSNP
rs541639472 1671 dbSNP
rs1223723733 1677 dbSNP
rs28495420 1678 dbSNP
rs1348225572 1680 dbSNP
rs1003471720 1682 dbSNP
rs762500298 1689 dbSNP
rs542945882 1690 dbSNP
rs1478555363 1693 dbSNP
rs1448663911 1697 dbSNP
rs1220248565 1698 dbSNP
rs1023489704 1711 dbSNP
rs150266804 1716 dbSNP
rs942147008 1719 dbSNP
rs898899534 1720 dbSNP
rs11988153 1721 dbSNP
rs1410706200 1729 dbSNP
rs540960036 1733 dbSNP
rs980842675 1740 dbSNP
rs1303134384 1744 dbSNP
rs747673810 1751 dbSNP
rs1364375921 1756 dbSNP
rs940364836 1760 dbSNP
rs1405063607 1764 dbSNP
rs533464868 1768 dbSNP
rs2053934 1771 dbSNP
rs1237972938 1772 dbSNP
rs988411949 1779 dbSNP
rs1282350871 1782 dbSNP
rs956926148 1787 dbSNP
rs1290993275 1796 dbSNP
rs1360200268 1797 dbSNP
rs1224838083 1798 dbSNP
rs1248611246 1804 dbSNP
rs1437462088 1809 dbSNP
rs369234818 1810 dbSNP
rs1234942465 1812 dbSNP
rs1443210655 1814 dbSNP
rs1163462655 1818 dbSNP
rs55809211 1820 dbSNP
rs558327245 1821 dbSNP
rs934262498 1824 dbSNP
rs1424677937 1851 dbSNP
rs922881049 1857 dbSNP
rs375980697 1858 dbSNP
rs1390445427 1864 dbSNP
rs1329183187 1865 dbSNP
rs1017773835 1872 dbSNP
rs111230182 1873 dbSNP
rs1229080668 1875 dbSNP
rs1326677531 1878 dbSNP
rs915327485 1885 dbSNP
rs747595536 1886 dbSNP
rs1360083321 1887 dbSNP
rs1029928054 1889 dbSNP
rs1249677759 1894 dbSNP
rs368222338 1895 dbSNP
rs1031023970 1901 dbSNP
rs1275420892 1903 dbSNP
rs1460222175 1909 dbSNP
rs1376810631 1915 dbSNP
rs1244215591 1920 dbSNP
rs1446968616 1931 dbSNP
rs981999568 1940 dbSNP
rs375802900 1942 dbSNP
rs549361840 1947 dbSNP
rs758851761 1948 dbSNP
rs140951686 1949 dbSNP
rs566492251 1950 dbSNP
rs1385100807 1953 dbSNP
rs1024004339 1963 dbSNP
rs1037529423 1964 dbSNP
rs1415554467 1965 dbSNP
rs1419186978 1971 dbSNP
rs115080545 1972 dbSNP
rs1476491123 1976 dbSNP
rs1424569271 1977 dbSNP
rs1383334374 1979 dbSNP
rs899034756 1986 dbSNP
rs1293400279 1990 dbSNP
rs1325890407 1991 dbSNP
rs1228273226 1996 dbSNP
rs779281493 2002 dbSNP
rs1015976848 2009 dbSNP
rs1004597335 2023 dbSNP
rs757353033 2024 dbSNP
rs1045571421 2031 dbSNP
rs1187560490 2033 dbSNP
rs4735537 2035 dbSNP
rs886077471 2039 dbSNP
rs544219182 2042 dbSNP
rs1259779607 2047 dbSNP
rs533250884 2048 dbSNP
rs575299264 2073 dbSNP
rs192802448 2074 dbSNP
rs942842681 2075 dbSNP
rs1197366673 2078 dbSNP
rs754849424 2088 dbSNP
rs1479245687 2091 dbSNP
rs1053844842 2095 dbSNP
rs979640642 2101 dbSNP
rs964566973 2108 dbSNP
rs1293392543 2111 dbSNP
rs151029082 2112 dbSNP
rs1354501885 2123 dbSNP
rs1384180727 2147 dbSNP
rs1327484944 2155 dbSNP
rs1280166635 2160 dbSNP
rs924048718 2170 dbSNP
rs982097765 2171 dbSNP
rs954466494 2173 dbSNP
rs970754040 2177 dbSNP
rs751572679 2185 dbSNP
rs916500038 2188 dbSNP
rs993114589 2189 dbSNP
rs562724970 2191 dbSNP
rs961972751 2198 dbSNP
rs1260587302 2202 dbSNP
rs1486479171 2209 dbSNP
rs766084347 2221 dbSNP
rs1207473919 2235 dbSNP
rs991148425 2235 dbSNP
rs1489662918 2240 dbSNP
rs1198191902 2242 dbSNP
rs1006110328 2247 dbSNP
rs372834615 2250 dbSNP
rs574018724 2251 dbSNP
rs1004696967 2255 dbSNP
rs1014116503 2274 dbSNP
rs560168750 2275 dbSNP
rs796460201 2276 dbSNP
rs1231070903 2279 dbSNP
rs1404442709 2283 dbSNP
rs1206594923 2284 dbSNP
rs368283101 2291 dbSNP
rs577657850 2302 dbSNP
rs1052474919 2305 dbSNP
rs1306725623 2315 dbSNP
rs935322796 2318 dbSNP
rs751097919 2319 dbSNP
rs113745204 2323 dbSNP
rs1044014014 2324 dbSNP
rs1273226695 2326 dbSNP
rs1221110058 2328 dbSNP
rs1222676500 2342 dbSNP
rs1489254957 2374 dbSNP
rs1175178497 2376 dbSNP
rs997135046 2381 dbSNP
rs1419494573 2382 dbSNP
rs114435030 2386 dbSNP
rs1383325956 2388 dbSNP
rs796803043 2390 dbSNP
rs1039920608 2394 dbSNP
rs1164295935 2397 dbSNP
rs1351749445 2403 dbSNP
rs1007564254 2406 dbSNP
rs537946262 2422 dbSNP
rs1325665952 2429 dbSNP
rs893949137 2431 dbSNP
rs575718932 2435 dbSNP
rs935517410 2437 dbSNP
rs924016196 2439 dbSNP
rs1449495134 2441 dbSNP
rs1313482766 2443 dbSNP
rs923020087 2450 dbSNP
rs555555449 2453 dbSNP
rs535729848 2465 dbSNP
rs761277016 2470 dbSNP
rs1400166757 2471 dbSNP
rs949326797 2480 dbSNP
rs1201966797 2481 dbSNP
rs1250441440 2489 dbSNP
rs1458004654 2493 dbSNP
rs566871772 2497 dbSNP
rs1178813489 2498 dbSNP
rs1440258069 2501 dbSNP
rs1252098627 2506 dbSNP
rs1191548434 2508 dbSNP
rs1180289174 2528 dbSNP
rs776091152 2530 dbSNP
rs1469683424 2531 dbSNP
rs1241120158 2537 dbSNP
rs555475259 2541 dbSNP
rs1006576836 2554 dbSNP
rs1416019132 2556 dbSNP
rs1408313588 2562 dbSNP
rs990724093 2565 dbSNP
rs1169951371 2569 dbSNP
rs963643032 2576 dbSNP
rs969320552 2578 dbSNP
rs909159792 2596 dbSNP
rs1314607149 2603 dbSNP
rs546582333 2604 dbSNP
rs747454625 2613 dbSNP
rs868203515 2625 dbSNP
rs1380656009 2632 dbSNP
rs1212312585 2633 dbSNP
rs950591951 2634 dbSNP
rs1052528884 2635 dbSNP
rs766241220 2636 dbSNP
rs1460738064 2638 dbSNP
rs541621346 2639 dbSNP
rs1210684481 2642 dbSNP
rs1239160448 2643 dbSNP
rs772255026 2644 dbSNP
rs1474434944 2646 dbSNP
rs1439116089 2650 dbSNP
rs868091314 2659 dbSNP
rs903873194 2660 dbSNP
rs1373706549 2664 dbSNP
rs539413001 2671 dbSNP
rs964379323 2672 dbSNP
rs532518781 2673 dbSNP
rs758358939 2673 dbSNP
rs570828466 2679 dbSNP
rs1017704819 2683 dbSNP
rs564545726 2684 dbSNP
rs1420195832 2686 dbSNP
rs1394372269 2688 dbSNP
rs111855435 2689 dbSNP
rs1032631039 2690 dbSNP
rs1129891 2692 dbSNP
rs1340653421 2702 dbSNP
rs1220056466 2704 dbSNP
rs1281017126 2709 dbSNP
rs868208539 2712 dbSNP
rs918728282 2713 dbSNP
rs1445206480 2729 dbSNP
rs1215056147 2733 dbSNP
rs141598979 2735 dbSNP
rs62522243 2737 dbSNP
rs546598612 2738 dbSNP
rs565004015 2738 dbSNP
rs908913621 2738 dbSNP
rs969750679 2738 dbSNP
rs949513722 2739 dbSNP
rs1400620170 2743 dbSNP
rs188233216 2745 dbSNP
rs992451731 2745 dbSNP
rs1360564374 2756 dbSNP
rs895125498 2758 dbSNP
rs1300841175 2759 dbSNP
rs1055522669 2761 dbSNP
rs1344481942 2763 dbSNP
rs1485081585 2765 dbSNP
rs942076579 2774 dbSNP
rs540541982 2778 dbSNP
rs577517721 2785 dbSNP
rs182811079 2787 dbSNP
rs1314244322 2788 dbSNP
rs1286691812 2811 dbSNP
rs191297959 2814 dbSNP
rs1355881988 2817 dbSNP
rs983333138 2820 dbSNP
rs147902246 2824 dbSNP
rs1030816856 2835 dbSNP
rs1201348275 2840 dbSNP
rs1231504889 2842 dbSNP
rs1469977841 2853 dbSNP
rs144453644 2854 dbSNP
rs1360174075 2859 dbSNP
rs1022751051 2860 dbSNP
rs756283843 2862 dbSNP
rs186563656 2863 dbSNP
rs1364478760 2867 dbSNP
rs1405571677 2870 dbSNP
rs1325160825 2874 dbSNP
rs1333724959 2878 dbSNP
rs975778792 2883 dbSNP
rs1309815736 2885 dbSNP
rs964796258 2891 dbSNP
rs1290899516 2898 dbSNP
rs1017385347 2899 dbSNP
rs1243767872 2900 dbSNP
rs990216618 2905 dbSNP
rs1357199685 2913 dbSNP
rs183332669 2919 dbSNP
rs1271179181 2923 dbSNP
rs1310992268 2934 dbSNP
rs190829660 2935 dbSNP
rs1377925082 2939 dbSNP
rs1240488746 2955 dbSNP
rs1205742892 2959 dbSNP
rs999788657 2959 dbSNP
rs1443312776 2965 dbSNP
rs1183567760 2972 dbSNP
rs934223236 2978 dbSNP
rs553206992 2979 dbSNP
rs902655698 2989 dbSNP
rs1164590473 3004 dbSNP
rs1037150714 3014 dbSNP
rs1193995587 3018 dbSNP
rs1025166722 3019 dbSNP
rs1402262953 3021 dbSNP
rs908960516 3022 dbSNP
rs186881675 3029 dbSNP
rs1254859480 3040 dbSNP
rs984909071 3046 dbSNP
rs540148824 3054 dbSNP
rs1268575348 3060 dbSNP
rs1338977845 3061 dbSNP
rs1199571861 3069 dbSNP
rs1260373260 3075 dbSNP
rs570723042 3092 dbSNP
rs1203542953 3100 dbSNP
rs758083739 3107 dbSNP
rs865881951 3109 dbSNP
rs1189023896 3111 dbSNP
rs916202784 3112 dbSNP
rs1477281478 3113 dbSNP
rs1171005667 3118 dbSNP
rs992107247 3119 dbSNP
rs570341288 3121 dbSNP
rs557361778 3130 dbSNP
rs1306175882 3131 dbSNP
rs960593445 3143 dbSNP
rs941985673 3159 dbSNP
rs544699530 3176 dbSNP
rs1340003298 3178 dbSNP
rs750251983 3200 dbSNP
rs1219448110 3203 dbSNP
rs1047607018 3209 dbSNP
rs568616196 3224 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000341166.3 | 3UTR | GUAUGAAAAAUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000341166.3 | 3UTR | GUAUGAAAAAUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer 0.644 3.4e-4 0.642 3.6e-4 24 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.787 5.9e-3 0.817 3.6e-3 9 Click to see details
GSE21032 Prostate cancer -0.24 1.4e-2 -0.244 1.3e-2 83 Click to see details
GSE26953 Aortic valvular endothelial cells -0.351 4.6e-2 -0.313 6.8e-2 24 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.32 5.9e-2 -0.130 2.7e-1 25 Click to see details
GSE28260 Renal cortex and medulla 0.438 6.7e-2 0.582 1.8e-2 13 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.331 7.7e-2 0.415 3.4e-2 20 Click to see details
GSE17498 Multiple myeloma -0.197 1.1e-1 -0.395 5.8e-3 40 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.15 2.4e-1 0.238 1.3e-1 25 Click to see details
GSE38226 Liver fibrosis -0.133 2.8e-1 -0.342 6.5e-2 21 Click to see details
GSE42095 Differentiated embryonic stem cells -0.095 3.3e-1 0.084 3.5e-1 23 Click to see details
GSE21687 Ependynoma primary tumors -0.045 3.6e-1 0.014 4.6e-1 64 Click to see details
GSE19783 ER+ ER+ breast cancer -0.036 4.4e-1 -0.095 3.5e-1 20 Click to see details
GSE19783 ER- ER- breast cancer 0.017 4.4e-1 0.003 4.9e-1 79 Click to see details
GSE19350 CNS germ cell tumors 0.035 4.6e-1 0.100 3.8e-1 12 Click to see details
GSE32688 Pancreatic cancer 0.018 4.6e-1 0.013 4.7e-1 32 Click to see details
GSE19536 Breast cancer -0.007 4.7e-1 0.002 4.9e-1 100 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
THCA 0.352 0 0.438 0 59 Click to see details
CESC -0.993 0.04 -1.000 0.5 3 Click to see details
HNSC 0.222 0.08 0.198 0.11 40 Click to see details
PRAD 0.329 0.08 0.414 0.04 19 Click to see details
KIRP 0.227 0.11 0.262 0.07 32 Click to see details
COAD 0.427 0.15 0.238 0.29 8 Click to see details
KICH -0.245 0.15 -0.074 0.38 20 Click to see details
LUSC 0.17 0.15 0.155 0.18 38 Click to see details
PCPG -0.82 0.19 -0.500 0.33 3 Click to see details
BLCA 0.208 0.22 0.197 0.23 16 Click to see details
STAD 0.126 0.26 0.188 0.17 28 Click to see details
BRCA 0.072 0.27 0.090 0.22 78 Click to see details
CHOL 0.2 0.32 0.476 0.12 8 Click to see details
PAAD -0.345 0.33 -0.600 0.2 4 Click to see details
LIHC -0.051 0.38 -0.055 0.37 38 Click to see details
KIRC 0.039 0.38 0.055 0.34 62 Click to see details
UCEC 0.067 0.39 0.133 0.29 19 Click to see details
LUAD -0.054 0.45 -0.050 0.45 9 Click to see details
ESCA -0.03 0.47 0.118 0.36 11 Click to see details
ESCA -0.03 0.47 0.118 0.36 11 Click to see details
ESCA -0.03 0.47 0.118 0.36 11 Click to see details
131 hsa-miR-23a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT038958 ATF1 activating transcription factor 1 1 1
MIRT057661 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT395438 NFKBID NFKB inhibitor delta 2 2
MIRT463884 WNT7B Wnt family member 7B 2 4
MIRT475804 HDGF heparin binding growth factor 2 2
MIRT478528 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT479278 CHD4 chromodomain helicase DNA binding protein 4 2 6
MIRT492564 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT500353 ZNF385A zinc finger protein 385A 2 2
MIRT509788 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT511566 HIST3H2BB histone cluster 3 H2B family member b 2 4
MIRT525450 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539558 CNKSR3 CNKSR family member 3 2 4
MIRT540034 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540225 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540242 RGS17 regulator of G protein signaling 17 2 2
MIRT540871 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT559065 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT560685 HIST1H1T histone cluster 1 H1 family member t 2 2
MIRT565593 SLC35G1 solute carrier family 35 member G1 2 2
MIRT565642 SKI SKI proto-oncogene 2 2
MIRT576747 Tmem127 transmembrane protein 127 2 2
MIRT607712 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT615682 NAV2 neuron navigator 2 2 2
MIRT617337 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617378 FAM227A family with sequence similarity 227 member A 2 2
MIRT620855 SERPING1 serpin family G member 1 2 2
MIRT625112 SLC1A5 solute carrier family 1 member 5 2 2
MIRT625124 NUP93 nucleoporin 93 2 2
MIRT625898 LINC00632 long intergenic non-protein coding RNA 632 2 2
MIRT626016 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626481 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT626573 MED7 mediator complex subunit 7 2 2
MIRT626814 PRR11 proline rich 11 2 2
MIRT628136 HM13 histocompatibility minor 13 2 2
MIRT630771 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT633133 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT636950 APTX aprataxin 2 2
MIRT637802 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT638622 GSR glutathione-disulfide reductase 2 4
MIRT642196 SMAGP small cell adhesion glycoprotein 2 2
MIRT645121 HES2 hes family bHLH transcription factor 2 2 2
MIRT645344 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT646564 ALDH5A1 aldehyde dehydrogenase 5 family member A1 2 2
MIRT649243 TRIM65 tripartite motif containing 65 2 2
MIRT651810 USP49 ubiquitin specific peptidase 49 2 2
MIRT652137 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT652668 TIMELESS timeless circadian clock 2 2
MIRT655894 NEK9 NIMA related kinase 9 2 2
MIRT656564 LYRM7 LYR motif containing 7 2 2
MIRT657194 IKZF3 IKAROS family zinc finger 3 2 2
MIRT657907 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT660207 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660619 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT660826 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT660986 ABHD2 abhydrolase domain containing 2 2 2
MIRT662232 PGBD4 piggyBac transposable element derived 4 2 2
MIRT663691 ZNF347 zinc finger protein 347 2 2
MIRT665577 TUBD1 tubulin delta 1 2 2
MIRT666149 SP2 Sp2 transcription factor 2 2
MIRT666310 SLC22A3 solute carrier family 22 member 3 2 2
MIRT666457 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT667716 KIAA1468 KIAA1468 2 2
MIRT668329 FKBP5 FK506 binding protein 5 2 2
MIRT668370 FBXO47 F-box protein 47 2 2
MIRT669304 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669538 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT671681 ADK adenosine kinase 2 2
MIRT672177 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT673604 HPSE heparanase 2 2
MIRT673749 ZNF333 zinc finger protein 333 2 2
MIRT674807 FAM229B family with sequence similarity 229 member B 2 2
MIRT675286 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675391 SVOP SV2 related protein 2 2
MIRT675788 MED28 mediator complex subunit 28 2 2
MIRT676151 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676499 GJD3 gap junction protein delta 3 2 2
MIRT676621 CSNK1E casein kinase 1 epsilon 2 2
MIRT676644 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676711 METTL14 methyltransferase like 14 2 2
MIRT676809 SHROOM4 shroom family member 4 2 2
MIRT677036 FOXO3 forkhead box O3 2 2
MIRT677062 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT677086 SMIM15 small integral membrane protein 15 2 2
MIRT677193 MURC caveolae associated protein 4 2 2
MIRT677273 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677345 POC1A POC1 centriolar protein A 2 2
MIRT677504 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677526 OCIAD2 OCIA domain containing 2 2 2
MIRT677661 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT677727 SSR1 signal sequence receptor subunit 1 2 2
MIRT677803 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT678144 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678376 VTA1 vesicle trafficking 1 2 2
MIRT678708 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT678868 FAM118A family with sequence similarity 118 member A 2 2
MIRT679039 LACTB lactamase beta 2 2
MIRT679081 PURB purine rich element binding protein B 2 2
MIRT679137 SYK spleen associated tyrosine kinase 2 2
MIRT679299 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679741 CABP4 calcium binding protein 4 2 2
MIRT679946 AS3MT arsenite methyltransferase 2 2
MIRT679976 E2F2 E2F transcription factor 2 2 2
MIRT683628 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT683901 PSMB9 proteasome subunit beta 9 2 2
MIRT684172 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684231 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT685403 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686253 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT687513 NCKAP1 NCK associated protein 1 2 2
MIRT688243 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688315 FAM151B family with sequence similarity 151 member B 2 2
MIRT688733 CNDP1 carnosine dipeptidase 1 2 2
MIRT689031 ANGPTL3 angiopoietin like 3 2 2
MIRT698207 TMEM248 transmembrane protein 248 2 2
MIRT699859 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT709954 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT711541 MSH3 mutS homolog 3 2 2
MIRT712077 WDR37 WD repeat domain 37 2 2
MIRT715312 POLR2E RNA polymerase II subunit E 2 2
MIRT715725 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT715748 HSD11B1L hydroxysteroid 11-beta dehydrogenase 1 like 2 2
MIRT717604 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717875 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT718042 NIPAL2 NIPA like domain containing 2 2 2
MIRT718829 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT724037 CAMK2N2 calcium/calmodulin dependent protein kinase II inhibitor 2 2 2
MIRT733305 TNF tumor necrosis factor 1 0
MIRT734941 HSPA1B heat shock protein family A (Hsp70) member 1B 3 0
MIRT737343 IGF2 insulin like growth factor 2 3 0
MIRT737546 PTEN phosphatase and tensin homolog 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-23a 1'-Acetoxychavicol acetate (ACA) NULL 119104 Microarray HN4 cell line 24317043 2014 down-regulated
miR-23a 5-Fluorouracil approved 3385 Quantitative real-time PCR colon cancer cells 17702597 2007 up-regulated
miR-23a Curcumin NULL 969516 Microarray BxPC-3 human pancreatic carcinoma cell line 18347134 2008 up-regulated
miR-23a Enoxacin approved 3229 Quantitative real-time PCR HEK293 cells 18641635 2008 up-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR endometrial stromal 19088369 2008 down-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR glandular epithelial cells 19088369 2008 down-regulated
miR-23a Medroxyprogesterone acetate approved 6279 Quantitative real-time PCR endometrial stromal 19088369 2008 down-regulated
miR-23a Medroxyprogesterone acetate approved 6279 Quantitative real-time PCR glandular epithelial cells 19088369 2008 up-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Microarray MCF-7 breast cancer cells 19528081 2009 up-regulated
miR-23a Diethylstilbestrol approved 448537 Microarray mammosphere-derived epithelial cells (MDEC) 19549897 2009 down-regulated
miR-23a Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-23a Bio-Oss NULL NULL Microarray osteoblast-like cell line (MG63) 20224834 2010 up-regulated
miR-23a Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-23a 5-Fluorouracil approved 3385 Microarray MCF-7 breast cancer cells 21506117 2011 up-regulated
miR-23a Trastuzumab approved NULL Microarray BT474 cells 22384020 2012 up-regulated
miR-23a Trastuzumab approved NULL Microarray SKBR3 cells. 22384020 2012 up-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Quantitative real-time PCR thymus 23024791 2012 down-regulated
miR-23a Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-23a Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse liver 19270793 2009 up-regulated
miR-23a Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 up-regualted
miR-23a Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 down-regulated
miR-23a Comfrey NULL 6440495 Microarray rat liver 21370286 2011 up-regulated
miR-23a Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-23a Ethanol NULL 702 Quantitative real-time PCR zebrafish embryos 22298809 2012 down-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 up-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 up-regulated
miR-23a Morphine approved 5288826 Microarray human monocyte-derived macrophages (h-mdms) infection with HIV-1 20564181 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive Low Breast Cancer cell line (MDA-MB-231)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (BGC823)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (SGC-7901)
hsa-mir-23a Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-mir-23a Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-23a Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive cell line (OE19)
hsa-mir-23a Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-23a Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive cell line (SGC-7901)
hsa-miR-23a-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-23a-5p Palbociclib 5330286 NSC758247 approved resistant High Breast Cancer cell line (T47D)
hsa-miR-23a-5p Arsenic trioxide 261004 NSC759274 approved sensitive Low Acute Myeloid Leukemia cell line (U937, Kasumi-1, THP-1, Jurkat E6.1, SUP B15)
hsa-miR-23a-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-23a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-23a-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (total RNA)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-23a-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-23a-5p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-23a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-23a-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-23a-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-23a-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-23a-5p Oxaliplatin 6857599 NSC266046 approved resistant cell line (IGROV-1)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (IGROV-1)
hsa-miR-23a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (MDA-231)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)
hsa-miR-23a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-23a-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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