pre-miRNA Information
pre-miRNA hsa-mir-4419b   
Genomic Coordinates chr12: 128244506 - 128244573
Description Homo sapiens miR-4419b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4419b
Sequence 42| GAGGCUGAAGGAAGAUGG |59
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZDHHC8   
Synonyms DHHC8, ZDHHCL1, ZNF378
Description zinc finger DHHC-type containing 8
Transcript NM_013373   
Other Transcripts NM_001185024   
Expression
Putative miRNA Targets on ZDHHC8
3'UTR of ZDHHC8
(miRNA target sites are highlighted)
>ZDHHC8|NM_013373|3'UTR
   1 GGACTGACTGCCACACATCCGCCATGGTGCCACGGGGACCAGGACCCCACAGCGCACCCCCCCTCCCCACCAACTTCTCT
  81 GCCCCAGGGACCCGAGGCCACCCCAGCCTGGTGTGGACCCATCGGCGGGAGAGAGTGCCACGCCTCCACAGCTTGCCCCA
 161 AGCGCTCTGCCTGCCCGTCCACTCATCTGCCCATGGGGAAGTCGGCTCACTGGGACAAGGGCCACTGGGCTGGTCTGTGT
 241 CTGGGCCTGTCCCATGGCTGGGGCAGTGAGGGGGCCCAGTCAGCCTCTTTGGGGCACCCTCTCTCAGCCAGGCTTGGCCC
 321 ACTGCCATCACCCAGCACCCCAGATCACCGCCAGGCCAGCCCCCAATGGTCCCCTTACGGACAGGTCCCAGAGATGGACA
 401 GAGGCACCCAGGGCCCCCACCGTCCTTCTGACACAGCCTGTGGGCTCCCGGACCGAGTGTCCCCCGCCAGGCTACTCCTA
 481 ACTAACGCGTTGCCTTTCACGGACCCCGCTGGAAGCTTGTAGCTTGGCAAGGCTGATGCTTCTGCCCTGGCCTGCTCTGG
 561 GTGGTGGTGGATAGGTGGACAGACGGCCAGCCAGCCAGCTGTGGCCGGGGGCCCGGCTCCATGTGTCCCGTGTCTGTGTG
 641 CTGTGCTGCCGCGCCGTGTCTGATGTGTCAGTGCTCCGGCCGCCGCTGTCCCTTTCATCAAAGCCTTAACCTTTGCTTTA
 721 TGCTCTTGTGGGAGGCGACGGGGGGGCAGGCGGGAGCAGGCACGGGGGTGATGCTGCCACAGGGGGCTGGTGACACCCAG
 801 AGCCCCCTCCCCAGCCCTCAGGCCCTCCCTGCCAAACTGGAGAACCCCACCCCAAGGCATGCCACGTCCGCAGCCCCGGC
 881 CTGGCTGCGGTGCTCGCGCCGTGGGAAAGCACACTGGGGAGGGGTCAGTGCTTCCCTTGGTGTCAGGGACCTGAGAGTAA
 961 GCACATGACAGCGTCTGCTTGCGTTGTGTCTGTTTTATGTTTTTATATCTACATCTATATATCTATAATTTTATTAAAAA
1041 AAAGAAAAAGAGTTATTTTGATTCTTTCCTTGGGCAAGGCCAGGGCTATTGCTGCAGGATCCCGAGTTAGGGGAGGGCAG
1121 GGGCCGGGCCCCAGAAGAGGGAGTGGCTGCTGTCTGGTGTGCAGGGGTCGGTGGGTTCCTCAGGGGCATTTCTGCCGACT
1201 TGGGCTGAGTCAGAGGCTTGGGAAGAGGGGGCGGCCGATGGTCTGTGGCTGGGAAGTGTGAGGGTCTCTCGCCTTGGGTC
1281 TGTGTCAGTTCTGGCAGTGACAGGGTGTTTGGGGGAAAGACTTGGGTCTGCCGCTACCCACAGGGGACTCTCAGGAACCC
1361 GAGAGCTTGGGGAGATGAAATGGGGGTGCATAGGGGCCACCTGTTGGCTCAGGGCCCTGTGGGGGCCGCTGAACCTGCTG
1441 GAACTCTCCTGCCTGCCACATGCCAGGGGCAGGGCTGAGGGAGTGTGAGGGATGCACAGCTGTTCAGGGCTGAGACATTC
1521 TGGGCTGGGGCTGTCCCAGCGTGGGAGGCGTGCGGGCTGTAGGGCCCCGAAGCTGACCTCCACCTTTCTGCTTCTCTCTC
1601 ACGGACGCCGCGGCCCGCAGGGGGCGGATTGGCACCTGCACCCGTGGATGGGGGCGGCGTGGCCAGCCTTGGGTGCCTCC
1681 TGGGCTGCACCTGTGCCACCTTGGCCGCCCGGAGGACCGCCCACCACTGCGGGCCCCCTGGAGCCAGGCCGCCGGGGCAC
1761 CCCCACGCGGGGCCATGTGCCGCCTGCACTTGGCTGCCTCCAGTCTTTTCCCCAGCCTCTCGGGGCCCTAGCAGGATGAC
1841 AAGTAGGCGGCTCTGGGGCCCAGGACAGCCCAGCTGGGGACCCAGGAGGTCAGACTGCAGTGGACCCTGGGGCAGGGCTG
1921 GGGGTGGGCTGGGCTCTCTGCTCCACCAGCCACAGCTTGACAGATTCCCAGCCTGCCAGGGCCTGAGACCCTGTGTCCAC
2001 ATGACCTCAGGGAGTCCCCCACCTGCTGCAGGGGGTCCAGCACCCCACAGGGGGGCAGTCCCAGAGCTGTGGGGACCGGC
2081 ACGACCTTTGCCCAGCCTCCCTACCCAACCAAGCACTTTAGACTAAGCCACTTCCTCCTCGGGGAGCCCAGGCCTCCGTG
2161 GGTTGGGCTGGGTGGGGGGGGGGTCTCAGGTTGCCCCTGAAGGTCTCTGCACTCCTCCTGCCCTTCCCCTGACACATGAA
2241 CAGATGCCTTAACTTCCTGGAGCCACCAGCCTGGTGAGCCATTGGCCTCTGCCTGCCACCAAGGTCCTGTGGTCTTGGCC
2321 AGCTCCGCCTGGGCCCCACTGGGGCTGCCTGCACCCAGAGACGATGCCGGCGGGATCTCAGAGGGCCTGAGGCCCAAGCC
2401 CTGTGTCCTCCAGCAGTGGTACGGCCTGCGGCAGGGTGGCACTCCGGCCAGCCCTTCTCCGTCACAGGGTCCCTGTCCCT
2481 GGGTCCACCCTGGGCTGTGGCTCTACATCTCCCATTTGGGGACGAGAAAGCCACAAAACCATTCTCTATTGTTCTTAAGG
2561 GTACCCCTGCTAATTAATTCCCCAAATAAAATTTTTGGTGTTGATCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gguagaaggaAGUCGGAg 5'
                    ||||||| 
Target 5' gggggcccagTCAGCCTc 3'
270 - 287 140.00 -15.30
2
miRNA  3' ggUAGAAGGAAGUCGGag 5'
            | | ||: ||||||  
Target 5' gcACCCTCTCTCAGCCag 3'
294 - 311 132.00 -11.80
3
miRNA  3' gguAGAAGGAAGUCGGAg 5'
             |:||||  |||||| 
Target 5' gtcTTTTCC-CCAGCCTc 3'
1803 - 1819 126.00 -17.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31498092 3 COSMIC
COSN31557171 55 COSMIC
COSN1259279 64 COSMIC
COSN28849732 64 COSMIC
COSN5770101 64 COSMIC
COSN1259280 65 COSMIC
COSN31538992 94 COSMIC
COSN5770105 159 COSMIC
COSN5770107 177 COSMIC
COSN22362850 204 COSMIC
COSN32170543 288 COSMIC
COSN1259281 378 COSMIC
COSN31562804 489 COSMIC
COSN31550759 552 COSMIC
COSN24098265 585 COSMIC
COSN26550723 624 COSMIC
COSN31611142 651 COSMIC
COSN31486111 683 COSMIC
COSN30172891 737 COSMIC
COSN30541491 745 COSMIC
COSN26639240 751 COSMIC
COSN32056547 752 COSMIC
COSN31515011 841 COSMIC
COSN31545006 869 COSMIC
COSN31532343 870 COSMIC
COSN25202964 885 COSMIC
COSN1259282 889 COSMIC
COSN31490652 954 COSMIC
COSN21903578 1138 COSMIC
COSN26687941 1221 COSMIC
COSN6562503 1225 COSMIC
COSN17530435 1233 COSMIC
COSN6691918 1428 COSMIC
COSN2522180 1516 COSMIC
COSN30681678 1600 COSMIC
COSN26555543 1611 COSMIC
COSM9489439 1642 COSMIC
COSM6431842 1666 COSMIC
COSM6431825 1671 COSMIC
COSM3785495 1702 COSMIC
COSM6308379 1703 COSMIC
COSM6431675 1707 COSMIC
COSM9490166 1711 COSMIC
COSM9638053 1712 COSMIC
COSM5694245 1720 COSMIC
COSM6408773 1734 COSMIC
COSM9903757 1737 COSMIC
COSM9490122 1738 COSMIC
COSM6230859 1767 COSMIC
COSM5776089 1780 COSMIC
COSM5692063 1803 COSMIC
COSM9232758 1810 COSMIC
COSM1566005 1817 COSMIC
COSM3693947 1823 COSMIC
COSM4479528 1828 COSMIC
COSN29123379 1915 COSMIC
COSN2533365 2174 COSMIC
COSN20312313 2175 COSMIC
rs1974653 1428 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs774809373 3 dbSNP
rs1169646117 6 dbSNP
rs371703620 10 dbSNP
rs1452807044 12 dbSNP
rs376232653 17 dbSNP
rs574327387 18 dbSNP
rs553469416 20 dbSNP
rs141404066 21 dbSNP
rs374194639 22 dbSNP
rs1328385152 25 dbSNP
rs752568278 34 dbSNP
rs1277901776 35 dbSNP
rs1316438225 38 dbSNP
rs992016566 42 dbSNP
rs1235605452 48 dbSNP
rs1254320927 49 dbSNP
rs175179 50 dbSNP
rs1282698934 54 dbSNP
rs1387638114 55 dbSNP
rs1159578984 56 dbSNP
rs146417481 57 dbSNP
rs968749353 57 dbSNP
rs1348817444 58 dbSNP
rs1246728627 59 dbSNP
rs1192394277 62 dbSNP
rs924576734 63 dbSNP
rs1217127493 64 dbSNP
rs1485202672 64 dbSNP
rs1278537303 65 dbSNP
rs190488529 69 dbSNP
rs1481911739 70 dbSNP
rs1345823620 83 dbSNP
rs1269599684 86 dbSNP
rs912426355 91 dbSNP
rs116900900 94 dbSNP
rs943880415 95 dbSNP
rs545639855 96 dbSNP
rs1374015043 98 dbSNP
rs1156503204 100 dbSNP
rs1310713259 110 dbSNP
rs1415759744 111 dbSNP
rs551162910 111 dbSNP
rs1434899859 112 dbSNP
rs1474127119 124 dbSNP
rs1425734617 125 dbSNP
rs1175109325 127 dbSNP
rs1357208644 128 dbSNP
rs1255066152 140 dbSNP
rs931041691 142 dbSNP
rs1048064053 143 dbSNP
rs1026537080 149 dbSNP
rs1298657089 152 dbSNP
rs1194193442 155 dbSNP
rs1320091413 157 dbSNP
rs951506033 159 dbSNP
rs1279454475 162 dbSNP
rs563207058 163 dbSNP
rs1004895783 164 dbSNP
rs1305654977 165 dbSNP
rs1449799543 168 dbSNP
rs1372012912 171 dbSNP
rs1327726829 173 dbSNP
rs1407777537 174 dbSNP
rs984132838 177 dbSNP
rs140210265 178 dbSNP
rs896022733 180 dbSNP
rs1183431523 182 dbSNP
rs1472986438 185 dbSNP
rs1013087985 188 dbSNP
rs375184450 193 dbSNP
rs1179915204 196 dbSNP
rs1459156686 198 dbSNP
rs1205893442 202 dbSNP
rs909928321 204 dbSNP
rs1023114043 205 dbSNP
rs968801549 215 dbSNP
rs937336912 216 dbSNP
rs1176266664 217 dbSNP
rs1254271239 221 dbSNP
rs1454451037 224 dbSNP
rs1378476344 226 dbSNP
rs978825569 230 dbSNP
rs1331386579 249 dbSNP
rs140879854 252 dbSNP
rs548819896 253 dbSNP
rs1348094244 255 dbSNP
rs1166828589 257 dbSNP
rs1405800808 268 dbSNP
rs533510077 270 dbSNP
rs1411416141 273 dbSNP
rs1031698702 274 dbSNP
rs1399480259 275 dbSNP
rs1193137429 276 dbSNP
rs568374564 287 dbSNP
rs1463944436 295 dbSNP
rs534164585 296 dbSNP
rs1222928940 298 dbSNP
rs780614069 302 dbSNP
rs1316707980 306 dbSNP
rs1282511551 308 dbSNP
rs149915669 312 dbSNP
rs1371817101 313 dbSNP
rs1436107703 314 dbSNP
rs114492336 321 dbSNP
rs1295235721 327 dbSNP
rs1437028986 334 dbSNP
rs912490487 350 dbSNP
rs1156566225 351 dbSNP
rs943915414 356 dbSNP
rs1381191641 357 dbSNP
rs576139114 361 dbSNP
rs538481488 367 dbSNP
rs11556521 368 dbSNP
rs1316610532 370 dbSNP
rs74464271 379 dbSNP
rs1240741242 388 dbSNP
rs1219300990 398 dbSNP
rs908250316 403 dbSNP
rs939710267 414 dbSNP
rs11556522 415 dbSNP
rs537752836 417 dbSNP
rs182203681 422 dbSNP
rs114158600 423 dbSNP
rs1220423851 435 dbSNP
rs1296229494 438 dbSNP
rs1244651898 448 dbSNP
rs1044611767 450 dbSNP
rs1464671751 451 dbSNP
rs904671976 451 dbSNP
rs116408456 456 dbSNP
rs1176819280 462 dbSNP
rs1031755974 466 dbSNP
rs374915538 467 dbSNP
rs540205949 472 dbSNP
rs1395381458 483 dbSNP
rs1404810186 487 dbSNP
rs186872897 488 dbSNP
rs1008904408 490 dbSNP
rs1482045284 493 dbSNP
rs576995203 494 dbSNP
rs1210252168 496 dbSNP
rs373883014 501 dbSNP
rs1338897131 502 dbSNP
rs1235728681 508 dbSNP
rs965337892 526 dbSNP
rs975288550 528 dbSNP
rs1292403660 532 dbSNP
rs1394532232 547 dbSNP
rs1404680764 572 dbSNP
rs921121053 573 dbSNP
rs1461597852 578 dbSNP
rs952545445 581 dbSNP
rs1173463919 584 dbSNP
rs1356212740 584 dbSNP
rs546458054 585 dbSNP
rs377763846 586 dbSNP
rs1257915355 587 dbSNP
rs1182069110 588 dbSNP
rs1456939269 590 dbSNP
rs1255526294 593 dbSNP
rs1200485185 597 dbSNP
rs771301474 607 dbSNP
rs563067753 608 dbSNP
rs747298085 609 dbSNP
rs1242391895 610 dbSNP
rs1342029889 612 dbSNP
rs1313721658 613 dbSNP
rs531895806 615 dbSNP
rs1487175969 616 dbSNP
rs1190034717 622 dbSNP
rs1369021967 624 dbSNP
rs939741589 630 dbSNP
rs1056810822 631 dbSNP
rs1459818305 634 dbSNP
rs1369351526 635 dbSNP
rs1410170019 641 dbSNP
rs1165041419 643 dbSNP
rs1438649832 651 dbSNP
rs916885367 652 dbSNP
rs948970527 653 dbSNP
rs1044663964 654 dbSNP
rs904729235 656 dbSNP
rs1000375308 657 dbSNP
rs542177964 658 dbSNP
rs1417041424 663 dbSNP
rs1053241673 664 dbSNP
rs1238628926 671 dbSNP
rs891899291 674 dbSNP
rs1311695852 675 dbSNP
rs1447692363 676 dbSNP
rs562380825 678 dbSNP
rs1446375976 679 dbSNP
rs527715692 682 dbSNP
rs1391946002 683 dbSNP
rs1018975749 685 dbSNP
rs527712758 686 dbSNP
rs1378141321 688 dbSNP
rs996758511 692 dbSNP
rs1439786794 698 dbSNP
rs1351003712 704 dbSNP
rs1196704871 708 dbSNP
rs1453203944 716 dbSNP
rs1215674679 719 dbSNP
rs1028204017 724 dbSNP
rs1288502309 729 dbSNP
rs952591325 737 dbSNP
rs1441777771 738 dbSNP
rs1236101598 740 dbSNP
rs1344410531 740 dbSNP
rs370279271 740 dbSNP
rs749355356 740 dbSNP
rs1185326325 742 dbSNP
rs1295459752 743 dbSNP
rs1362782543 745 dbSNP
rs547372837 746 dbSNP
rs961180729 752 dbSNP
rs992968433 753 dbSNP
rs916959845 757 dbSNP
rs1378721031 759 dbSNP
rs1192833405 764 dbSNP
rs1436754561 764 dbSNP
rs1476728510 764 dbSNP
rs570653628 765 dbSNP
rs533248983 769 dbSNP
rs768869704 771 dbSNP
rs191755096 780 dbSNP
rs948358514 782 dbSNP
rs774724814 783 dbSNP
rs568966706 790 dbSNP
rs868667196 798 dbSNP
rs369241550 799 dbSNP
rs1337062807 808 dbSNP
rs1217268148 810 dbSNP
rs1342808207 814 dbSNP
rs926198375 824 dbSNP
rs1414526487 825 dbSNP
rs936215798 827 dbSNP
rs1331783697 843 dbSNP
rs372603494 852 dbSNP
rs1415735800 867 dbSNP
rs1053305689 870 dbSNP
rs1374216710 871 dbSNP
rs1425540978 872 dbSNP
rs891947455 875 dbSNP
rs538009359 878 dbSNP
rs1236013787 879 dbSNP
rs776529221 886 dbSNP
rs1257458928 887 dbSNP
rs1344018683 888 dbSNP
rs554588326 889 dbSNP
rs1275064805 890 dbSNP
rs1040857138 896 dbSNP
rs762198578 897 dbSNP
rs996135191 898 dbSNP
rs533803782 899 dbSNP
rs888376285 901 dbSNP
rs565683862 902 dbSNP
rs773768153 905 dbSNP
rs1377467600 911 dbSNP
rs1015449671 915 dbSNP
rs961498323 919 dbSNP
rs992623189 920 dbSNP
rs1169968290 922 dbSNP
rs1024485015 924 dbSNP
rs1465513357 929 dbSNP
rs541050574 930 dbSNP
rs1397495654 936 dbSNP
rs979784514 940 dbSNP
rs1301513573 942 dbSNP
rs1221398607 945 dbSNP
rs925582563 945 dbSNP
rs1450237804 951 dbSNP
rs1292426713 955 dbSNP
rs1229702306 956 dbSNP
rs545925877 966 dbSNP
rs989451824 970 dbSNP
rs1237414078 971 dbSNP
rs1271657027 973 dbSNP
rs564837529 974 dbSNP
rs1347924697 976 dbSNP
rs913439581 976 dbSNP
rs556191749 983 dbSNP
rs1425026689 984 dbSNP
rs1197926445 991 dbSNP
rs181278686 992 dbSNP
rs1469859656 994 dbSNP
rs1157066525 997 dbSNP
rs73877145 998 dbSNP
rs1441635131 1001 dbSNP
rs1380920897 1012 dbSNP
rs1040506548 1018 dbSNP
rs1487765882 1020 dbSNP
rs542390168 1020 dbSNP
rs1210700103 1021 dbSNP
rs1222827770 1022 dbSNP
rs900613530 1024 dbSNP
rs1355234241 1036 dbSNP
rs932037917 1036 dbSNP
rs1049078411 1041 dbSNP
rs1195803360 1041 dbSNP
rs1365452331 1044 dbSNP
rs776948001 1049 dbSNP
rs370825239 1051 dbSNP
rs1359594419 1055 dbSNP
rs1296583468 1057 dbSNP
rs1421707512 1062 dbSNP
rs1477819267 1069 dbSNP
rs562280184 1070 dbSNP
rs759890669 1075 dbSNP
rs897034214 1078 dbSNP
rs1192270232 1082 dbSNP
rs1477707239 1086 dbSNP
rs1014508294 1089 dbSNP
rs1024121239 1104 dbSNP
rs979836881 1105 dbSNP
rs1260913662 1108 dbSNP
rs527970562 1112 dbSNP
rs1208895725 1121 dbSNP
rs1032702974 1126 dbSNP
rs1280663139 1127 dbSNP
rs1389583793 1130 dbSNP
rs701451 1135 dbSNP
rs957024950 1136 dbSNP
rs1276018986 1144 dbSNP
rs1384647746 1153 dbSNP
rs989111650 1155 dbSNP
rs1041903700 1159 dbSNP
rs760098061 1164 dbSNP
rs1340877762 1165 dbSNP
rs1360910961 1167 dbSNP
rs541075306 1170 dbSNP
rs564143546 1171 dbSNP
rs1336809781 1182 dbSNP
rs1262061101 1186 dbSNP
rs1180858175 1193 dbSNP
rs966296109 1197 dbSNP
rs533115449 1198 dbSNP
rs549876534 1207 dbSNP
rs1317276073 1209 dbSNP
rs976669856 1217 dbSNP
rs1220310429 1218 dbSNP
rs1264886190 1224 dbSNP
rs1974652 1225 dbSNP
rs531433712 1226 dbSNP
rs1264419076 1227 dbSNP
rs1049131185 1228 dbSNP
rs909248528 1229 dbSNP
rs1420678329 1231 dbSNP
rs940692463 1233 dbSNP
rs1036328299 1234 dbSNP
rs1164868297 1237 dbSNP
rs897084023 1238 dbSNP
rs1421634844 1242 dbSNP
rs1386687458 1244 dbSNP
rs1183716568 1252 dbSNP
rs1014145330 1257 dbSNP
rs148618709 1271 dbSNP
rs1200397382 1275 dbSNP
rs1480840307 1276 dbSNP
rs1264596439 1281 dbSNP
rs1456117038 1293 dbSNP
rs1242912776 1302 dbSNP
rs1160058328 1304 dbSNP
rs1045622450 1310 dbSNP
rs1374683272 1316 dbSNP
rs1333953575 1317 dbSNP
rs905676690 1320 dbSNP
rs1001325014 1322 dbSNP
rs1360972994 1334 dbSNP
rs1032753853 1338 dbSNP
rs1386786323 1342 dbSNP
rs957111011 1343 dbSNP
rs1438559418 1345 dbSNP
rs1010334449 1347 dbSNP
rs763672497 1350 dbSNP
rs1296067024 1359 dbSNP
rs371131851 1361 dbSNP
rs1396471068 1362 dbSNP
rs1292798844 1366 dbSNP
rs548347419 1370 dbSNP
rs1319988693 1372 dbSNP
rs1174949166 1376 dbSNP
rs1351633497 1377 dbSNP
rs922141033 1380 dbSNP
rs1239830643 1381 dbSNP
rs1242651330 1387 dbSNP
rs1286972156 1388 dbSNP
rs1299818029 1397 dbSNP
rs1388951602 1399 dbSNP
rs528183895 1408 dbSNP
rs1214922133 1411 dbSNP
rs1418675604 1416 dbSNP
rs1358100998 1420 dbSNP
rs1159846235 1426 dbSNP
rs1974653 1428 dbSNP
rs940764027 1429 dbSNP
rs1483902688 1430 dbSNP
rs1481297483 1436 dbSNP
rs1269279162 1437 dbSNP
rs1193240652 1438 dbSNP
rs1487457468 1449 dbSNP
rs1036787237 1458 dbSNP
rs917913554 1462 dbSNP
rs950034313 1463 dbSNP
rs1344385844 1464 dbSNP
rs1254783567 1465 dbSNP
rs1225822560 1470 dbSNP
rs1346575410 1478 dbSNP
rs1045674975 1479 dbSNP
rs868846325 1480 dbSNP
rs1254926184 1495 dbSNP
rs1277909945 1498 dbSNP
rs905730438 1503 dbSNP
rs9606261 1520 dbSNP
rs1319864774 1526 dbSNP
rs1179922759 1530 dbSNP
rs1054252155 1532 dbSNP
rs892889998 1532 dbSNP
rs1009975635 1535 dbSNP
rs1418657191 1541 dbSNP
rs1156622864 1542 dbSNP
rs1169744170 1544 dbSNP
rs1020393549 1547 dbSNP
rs1360683244 1550 dbSNP
rs965737181 1551 dbSNP
rs997756231 1552 dbSNP
rs370810244 1555 dbSNP
rs1206147030 1558 dbSNP
rs1324951232 1560 dbSNP
rs1257946093 1561 dbSNP
rs953589169 1569 dbSNP
rs984944755 1570 dbSNP
rs5993921 1573 dbSNP
rs1356315932 1578 dbSNP
rs1016359826 1583 dbSNP
rs780945087 1584 dbSNP
rs1488374648 1585 dbSNP
rs11705346 1603 dbSNP
rs1260664543 1605 dbSNP
rs556016795 1607 dbSNP
rs917951690 1608 dbSNP
rs949406195 1609 dbSNP
rs868374662 1610 dbSNP
rs1161469578 1612 dbSNP
rs980733919 1614 dbSNP
rs1362556097 1617 dbSNP
rs576074337 1618 dbSNP
rs1297820192 1621 dbSNP
rs1338772849 1624 dbSNP
rs1472564167 1625 dbSNP
rs1398128569 1626 dbSNP
rs780988649 1627 dbSNP
rs1340347927 1642 dbSNP
rs745521459 1644 dbSNP
rs1261910463 1645 dbSNP
rs1353781904 1650 dbSNP
rs937211444 1656 dbSNP
rs1283411666 1657 dbSNP
rs1174642750 1659 dbSNP
rs769371581 1660 dbSNP
rs1200782138 1666 dbSNP
rs1436087342 1686 dbSNP
rs1054319286 1690 dbSNP
rs892951609 1691 dbSNP
rs1421929155 1701 dbSNP
rs945825488 1703 dbSNP
rs1404520433 1707 dbSNP
rs111780122 1708 dbSNP
rs1440367391 1709 dbSNP
rs997139991 1710 dbSNP
rs1358799775 1711 dbSNP
rs779733093 1712 dbSNP
rs749719121 1719 dbSNP
rs1028590222 1720 dbSNP
rs1401958300 1726 dbSNP
rs1394711798 1728 dbSNP
rs889380451 1731 dbSNP
rs1006416958 1732 dbSNP
rs1450220611 1733 dbSNP
rs1238729664 1734 dbSNP
rs1306495094 1735 dbSNP
rs535710935 1737 dbSNP
rs1210404661 1739 dbSNP
rs1255113905 1743 dbSNP
rs1482152649 1744 dbSNP
rs555925434 1751 dbSNP
rs962235301 1752 dbSNP
rs1457276325 1754 dbSNP
rs1178052169 1755 dbSNP
rs762223292 1757 dbSNP
rs1435067174 1759 dbSNP
rs972592714 1761 dbSNP
rs1377350187 1763 dbSNP
rs1425483260 1764 dbSNP
rs1464831019 1765 dbSNP
rs1333817066 1767 dbSNP
rs772382841 1768 dbSNP
rs5992514 1769 dbSNP
rs1328620048 1770 dbSNP
rs970763935 1772 dbSNP
rs1219375869 1773 dbSNP
rs760897000 1780 dbSNP
rs1310129814 1781 dbSNP
rs1220182431 1782 dbSNP
rs766392478 1783 dbSNP
rs1317149989 1785 dbSNP
rs1490425741 1786 dbSNP
rs1284829337 1788 dbSNP
rs1196685856 1790 dbSNP
rs753888532 1792 dbSNP
rs1397481062 1796 dbSNP
rs1489502718 1799 dbSNP
rs1191886489 1806 dbSNP
rs1318187152 1806 dbSNP
rs1284874059 1809 dbSNP
rs1266915672 1814 dbSNP
rs9605070 1817 dbSNP
rs1173190780 1822 dbSNP
rs764082113 1823 dbSNP
rs937263679 1826 dbSNP
rs1173722403 1833 dbSNP
rs751521497 1836 dbSNP
rs990063878 1846 dbSNP
rs564404347 1850 dbSNP
rs1432994205 1860 dbSNP
rs1292460390 1864 dbSNP
rs1364997480 1865 dbSNP
rs1401464890 1867 dbSNP
rs1468657101 1871 dbSNP
rs757012323 1873 dbSNP
rs577636969 1874 dbSNP
rs1477697440 1880 dbSNP
rs1488576140 1906 dbSNP
rs1041901673 1909 dbSNP
rs1184346641 1912 dbSNP
rs1486578978 1919 dbSNP
rs1242140958 1920 dbSNP
rs1374023657 1920 dbSNP
rs1190411548 1937 dbSNP
rs1422793151 1939 dbSNP
rs140425964 1941 dbSNP
rs1018595478 1946 dbSNP
rs901610118 1959 dbSNP
rs933044408 1963 dbSNP
rs1050082489 1976 dbSNP
rs1171272196 1981 dbSNP
rs888766507 1994 dbSNP
rs1464157378 2000 dbSNP
rs1006470746 2001 dbSNP
rs112901260 2003 dbSNP
rs1350697325 2007 dbSNP
rs1337949372 2008 dbSNP
rs1016509454 2016 dbSNP
rs898038742 2018 dbSNP
rs1167906362 2020 dbSNP
rs543778316 2026 dbSNP
rs1419751888 2035 dbSNP
rs1025541112 2036 dbSNP
rs60730595 2052 dbSNP
rs1204144765 2056 dbSNP
rs1002270048 2057 dbSNP
rs1249356577 2061 dbSNP
rs1206336606 2065 dbSNP
rs1033719378 2067 dbSNP
rs1315901612 2068 dbSNP
rs185531041 2078 dbSNP
rs1385012219 2080 dbSNP
rs989851482 2081 dbSNP
rs1316552200 2084 dbSNP
rs1212318419 2086 dbSNP
rs1300310199 2087 dbSNP
rs1291317972 2089 dbSNP
rs1462807006 2093 dbSNP
rs914494746 2101 dbSNP
rs1322018243 2106 dbSNP
rs1442241990 2109 dbSNP
rs1220356951 2114 dbSNP
rs967675895 2115 dbSNP
rs977292889 2135 dbSNP
rs548130552 2137 dbSNP
rs561921130 2139 dbSNP
rs1197405938 2142 dbSNP
rs751521086 2144 dbSNP
rs923096999 2148 dbSNP
rs1265100023 2150 dbSNP
rs1194061880 2158 dbSNP
rs1262411717 2161 dbSNP
rs1292655826 2169 dbSNP
rs1474351362 2170 dbSNP
rs773824934 2172 dbSNP
rs1334582282 2173 dbSNP
rs761531803 2173 dbSNP
rs10686766 2174 dbSNP
rs1392343162 2174 dbSNP
rs149872409 2174 dbSNP
rs527450612 2175 dbSNP
rs1037733779 2176 dbSNP
rs527254407 2177 dbSNP
rs547737830 2177 dbSNP
rs1046582018 2178 dbSNP
rs906695170 2178 dbSNP
rs1033771615 2179 dbSNP
rs533827950 2181 dbSNP
rs570740898 2182 dbSNP
rs1269885337 2183 dbSNP
rs867124345 2183 dbSNP
rs1192659693 2184 dbSNP
rs1362890861 2185 dbSNP
rs1263880903 2195 dbSNP
rs1205768462 2196 dbSNP
rs1197774766 2197 dbSNP
rs1401025965 2203 dbSNP
rs1261811185 2204 dbSNP
rs1225798530 2209 dbSNP
rs1297921301 2212 dbSNP
rs1021343754 2216 dbSNP
rs967351334 2221 dbSNP
rs977724549 2223 dbSNP
rs1450808736 2228 dbSNP
rs923149480 2237 dbSNP
rs1405333271 2248 dbSNP
rs954539036 2274 dbSNP
rs1356408924 2278 dbSNP
rs1470835455 2281 dbSNP
rs7290959 2289 dbSNP
rs779198012 2292 dbSNP
rs1474578929 2293 dbSNP
rs1374973951 2297 dbSNP
rs1194078304 2301 dbSNP
rs1444073186 2304 dbSNP
rs1206054287 2305 dbSNP
rs1241852255 2305 dbSNP
rs1462070858 2310 dbSNP
rs1272685468 2325 dbSNP
rs547750451 2327 dbSNP
rs941753206 2328 dbSNP
rs1228508727 2329 dbSNP
rs1217076912 2334 dbSNP
rs1381318287 2336 dbSNP
rs1312872791 2354 dbSNP
rs1284959153 2355 dbSNP
rs570728355 2358 dbSNP
rs1189521181 2359 dbSNP
rs918898933 2363 dbSNP
rs1398982348 2369 dbSNP
rs569697971 2370 dbSNP
rs1238176657 2372 dbSNP
rs1383420769 2373 dbSNP
rs1052392 2382 dbSNP
rs1445822535 2386 dbSNP
rs1232801696 2393 dbSNP
rs1180175266 2399 dbSNP
rs190282358 2400 dbSNP
rs1274676349 2402 dbSNP
rs1205377409 2409 dbSNP
rs2292570 2418 dbSNP
rs1289017271 2423 dbSNP
rs1002373228 2424 dbSNP
rs1379894526 2427 dbSNP
rs1420478944 2429 dbSNP
rs1055272947 2430 dbSNP
rs1158489517 2431 dbSNP
rs1359007413 2432 dbSNP
rs1308902456 2433 dbSNP
rs951970813 2438 dbSNP
rs893906447 2446 dbSNP
rs1335412134 2447 dbSNP
rs984206624 2451 dbSNP
rs1165619992 2454 dbSNP
rs1052398 2458 dbSNP
rs7286804 2461 dbSNP
rs546307084 2462 dbSNP
rs1020979880 2463 dbSNP
rs1233762356 2467 dbSNP
rs1199120451 2484 dbSNP
rs1490095622 2485 dbSNP
rs1378657727 2486 dbSNP
rs902510679 2492 dbSNP
rs372304587 2497 dbSNP
rs146488382 2510 dbSNP
rs558058287 2524 dbSNP
rs577900207 2525 dbSNP
rs34467801 2539 dbSNP
rs1202151315 2540 dbSNP
rs557990209 2549 dbSNP
rs1441723405 2550 dbSNP
rs1343931274 2561 dbSNP
rs182147148 2566 dbSNP
rs1240034242 2568 dbSNP
rs1157582086 2571 dbSNP
rs1440609690 2571 dbSNP
rs1402999842 2572 dbSNP
rs1409314745 2582 dbSNP
rs1178232300 2589 dbSNP
rs1362462498 2590 dbSNP
rs954589375 2599 dbSNP
rs760976780 2600 dbSNP
rs1426787312 2602 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000334554.7 | 3UTR | CAGUGAGGGGGCCCAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
390 hsa-miR-4419b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061343 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT072743 GLCE glucuronic acid epimerase 2 2
MIRT180549 TXNIP thioredoxin interacting protein 2 2
MIRT186147 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT271044 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT334761 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT443279 TSPAN15 tetraspanin 15 2 2
MIRT447047 ZNF439 zinc finger protein 439 2 2
MIRT447351 KIF6 kinesin family member 6 2 2
MIRT448925 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT452899 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453087 SUMF2 sulfatase modifying factor 2 2 2
MIRT454071 SLC35E3 solute carrier family 35 member E3 2 2
MIRT456216 LIX1L limb and CNS expressed 1 like 2 6
MIRT456951 LRP10 LDL receptor related protein 10 2 2
MIRT458025 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459999 RFT1 RFT1 homolog 2 2
MIRT460046 CDCP1 CUB domain containing protein 1 2 2
MIRT460982 STK17B serine/threonine kinase 17b 2 2
MIRT464405 URM1 ubiquitin related modifier 1 2 2
MIRT466256 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT466536 TBXA2R thromboxane A2 receptor 2 2
MIRT470922 PLD5 phospholipase D family member 5 2 8
MIRT472835 MTMR10 myotubularin related protein 10 2 6
MIRT473352 MEMO1 mediator of cell motility 1 2 2
MIRT475504 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT478862 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT480898 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT482686 NXN nucleoredoxin 2 4
MIRT484128 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT486172 TLE3 transducin like enhancer of split 3 2 4
MIRT486539 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486588 ZNF619 zinc finger protein 619 2 2
MIRT495475 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT495536 TXNRD2 thioredoxin reductase 2 2 2
MIRT495566 UNC5C unc-5 netrin receptor C 2 2
MIRT495719 PADI1 peptidyl arginine deiminase 1 2 2
MIRT495890 CLOCK clock circadian regulator 2 2
MIRT495932 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496026 ZBED3 zinc finger BED-type containing 3 2 2
MIRT496216 PAX6 paired box 6 2 2
MIRT496349 VAMP1 vesicle associated membrane protein 1 2 2
MIRT496354 PPY pancreatic polypeptide 2 2
MIRT496400 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT496416 PARVB parvin beta 2 2
MIRT496458 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496519 GINS2 GINS complex subunit 2 2 2
MIRT496562 SLC39A9 solute carrier family 39 member 9 2 2
MIRT498605 KRT8 keratin 8 2 2
MIRT503434 SLC25A45 solute carrier family 25 member 45 2 6
MIRT503573 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT503847 ATP13A4 ATPase 13A4 2 4
MIRT504247 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 4
MIRT505606 SLC35F1 solute carrier family 35 member F1 2 2
MIRT507749 CERS2 ceramide synthase 2 2 4
MIRT508411 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508508 RSRC1 arginine and serine rich coiled-coil 1 2 6
MIRT508944 AK4 adenylate kinase 4 2 4
MIRT509460 ZNF587 zinc finger protein 587 2 6
MIRT509862 ZNF641 zinc finger protein 641 2 4
MIRT511397 IKZF3 IKAROS family zinc finger 3 2 6
MIRT512517 BTBD19 BTB domain containing 19 2 2
MIRT513507 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT514155 TMEM145 transmembrane protein 145 2 4
MIRT514486 SLPI secretory leukocyte peptidase inhibitor 2 4
MIRT514521 SHISA9 shisa family member 9 2 2
MIRT514970 KLLN killin, p53-regulated DNA replication inhibitor 2 4
MIRT515030 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT515963 C9orf156 tRNA methyltransferase O 2 2
MIRT516092 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT517223 PRIM1 DNA primase subunit 1 2 4
MIRT517459 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT517790 EFCAB11 EF-hand calcium binding domain 11 2 2
MIRT517979 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT519458 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT519599 ZNF805 zinc finger protein 805 2 2
MIRT520339 UBXN2A UBX domain protein 2A 2 2
MIRT521345 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT521571 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT523382 GSG2 histone H3 associated protein kinase 2 8
MIRT524106 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT524886 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT528772 CD1D CD1d molecule 2 2
MIRT530665 TRIM56 tripartite motif containing 56 2 2
MIRT531107 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT531575 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT535173 PLEKHB2 pleckstrin homology domain containing B2 2 4
MIRT544168 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT550582 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551039 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT551295 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551339 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT552092 SLFN12L schlafen family member 12 like 2 6
MIRT555403 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557087 HOXB3 homeobox B3 2 2
MIRT559388 ATP11C ATPase phospholipid transporting 11C 2 2
MIRT560305 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT561028 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562460 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT562982 PARK7 Parkinsonism associated deglycase 2 2
MIRT563548 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT564412 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT569437 PCGF3 polycomb group ring finger 3 2 2
MIRT572097 EXOC8 exocyst complex component 8 2 2
MIRT575571 Cd99 CD99 antigen 2 2
MIRT575789 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT576975 Lmtk2 lemur tyrosine kinase 2 2 2
MIRT610864 ARSA arylsulfatase A 2 2
MIRT614061 NTPCR nucleoside-triphosphatase, cancer-related 2 2
MIRT614141 THAP1 THAP domain containing 1 2 6
MIRT615235 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617429 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618882 MBL2 mannose binding lectin 2 2 2
MIRT618984 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619196 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620323 AQP6 aquaporin 6 2 2
MIRT621960 STX7 syntaxin 7 2 2
MIRT622057 SSBP2 single stranded DNA binding protein 2 2 2
MIRT624930 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624986 ZNF665 zinc finger protein 665 2 4
MIRT625463 ZNF681 zinc finger protein 681 2 4
MIRT625497 SMAD9 SMAD family member 9 2 2
MIRT625599 KLHL23 kelch like family member 23 2 2
MIRT625668 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625888 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626161 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626238 ZNF749 zinc finger protein 749 2 2
MIRT626631 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626994 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627898 OLFML2A olfactomedin like 2A 2 2
MIRT627988 NDRG3 NDRG family member 3 2 2
MIRT628324 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628549 ZNF701 zinc finger protein 701 2 2
MIRT629464 WIZ widely interspaced zinc finger motifs 2 2
MIRT630527 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT631487 KLHL21 kelch like family member 21 2 2
MIRT631957 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632178 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632282 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT632321 TMEM185B transmembrane protein 185B 2 2
MIRT632853 IGF1 insulin like growth factor 1 2 2
MIRT632862 HSPA2 heat shock protein family A (Hsp70) member 2 2 2
MIRT633322 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT633398 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633930 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT634785 CBFA2T2 CBFA2/RUNX1 translocation partner 2 2 2
MIRT634851 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT636370 OGFRL1 opioid growth factor receptor like 1 2 2
MIRT637219 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT637690 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT639196 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT639599 CD3EAP CD3e molecule associated protein 2 2
MIRT639681 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640669 ARSK arylsulfatase family member K 2 2
MIRT642377 ZNF581 zinc finger protein 581 2 2
MIRT642403 ZNF556 zinc finger protein 556 2 2
MIRT645079 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646475 ZNF669 zinc finger protein 669 2 2
MIRT647325 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647490 ZNF639 zinc finger protein 639 2 2
MIRT647989 PDE12 phosphodiesterase 12 2 2
MIRT648196 CENPN centromere protein N 2 2
MIRT649006 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT650457 ZNF141 zinc finger protein 141 2 2
MIRT650533 CCDC77 coiled-coil domain containing 77 2 2
MIRT650999 ZNF770 zinc finger protein 770 2 2
MIRT653832 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 4
MIRT655734 NRXN3 neurexin 3 2 2
MIRT657577 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT658610 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT658633 ENAH ENAH, actin regulator 2 2
MIRT659820 CASP16 caspase 16, pseudogene 2 2
MIRT661142 ZNF43 zinc finger protein 43 2 2
MIRT661201 MPPE1 metallophosphoesterase 1 2 2
MIRT661436 MANSC1 MANSC domain containing 1 2 2
MIRT661498 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661682 ZNF623 zinc finger protein 623 2 2
MIRT661796 NLRC3 NLR family CARD domain containing 3 2 2
MIRT661808 NUP85 nucleoporin 85 2 2
MIRT661861 ZNF766 zinc finger protein 766 2 2
MIRT661889 EXOSC6 exosome component 6 2 2
MIRT662291 SLC29A4 solute carrier family 29 member 4 2 2
MIRT662515 ANGPT4 angiopoietin 4 2 2
MIRT662682 LRRC47 leucine rich repeat containing 47 2 2
MIRT662716 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT662834 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT662890 PCDHA6 protocadherin alpha 6 2 2
MIRT663134 ULBP3 UL16 binding protein 3 2 2
MIRT663710 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663869 MUC20 mucin 20, cell surface associated 2 2
MIRT664267 NMUR1 neuromedin U receptor 1 2 2
MIRT664510 POLR3K RNA polymerase III subunit K 2 2
MIRT664659 TRIM65 tripartite motif containing 65 2 2
MIRT664849 HUS1 HUS1 checkpoint clamp component 2 2
MIRT664944 CARD6 caspase recruitment domain family member 6 2 4
MIRT665348 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT665514 UTP15 UTP15, small subunit processome component 2 2
MIRT665648 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT665668 TRAF1 TNF receptor associated factor 1 2 2
MIRT665692 TNPO3 transportin 3 2 2
MIRT665741 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665850 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT665940 TBC1D19 TBC1 domain family member 19 2 4
MIRT666005 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT666172 SNX27 sorting nexin family member 27 2 4
MIRT666373 SHOX short stature homeobox 2 2
MIRT667004 PDPN podoplanin 2 4
MIRT667185 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667603 LIPC lipase C, hepatic type 2 2
MIRT667828 IRGQ immunity related GTPase Q 2 2
MIRT667862 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668296 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 4
MIRT668463 FAM208A family with sequence similarity 208 member A 2 2
MIRT668580 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT669012 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669103 CDK19 cyclin dependent kinase 19 2 2
MIRT670073 ZNF783 zinc finger family member 783 2 2
MIRT670326 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670756 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670964 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT670985 MED17 mediator complex subunit 17 2 2
MIRT671195 ZNF891 zinc finger protein 891 2 2
MIRT672423 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672495 YIPF4 Yip1 domain family member 4 2 2
MIRT672537 MGAM maltase-glucoamylase 2 2
MIRT672749 ZNF585B zinc finger protein 585B 2 4
MIRT673390 ZNF124 zinc finger protein 124 2 2
MIRT673452 ZNF583 zinc finger protein 583 2 2
MIRT673917 DCTN6 dynactin subunit 6 2 2
MIRT673952 ZNF500 zinc finger protein 500 2 2
MIRT674102 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674167 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674206 FUT2 fucosyltransferase 2 2 2
MIRT674452 PURB purine rich element binding protein B 2 4
MIRT674687 PLCE1 phospholipase C epsilon 1 2 2
MIRT674701 TMEM59 transmembrane protein 59 2 2
MIRT674800 NPR1 natriuretic peptide receptor 1 2 4
MIRT675247 MAK male germ cell associated kinase 2 2
MIRT676012 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676374 APTX aprataxin 2 2
MIRT676834 TNFSF15 TNF superfamily member 15 2 2
MIRT678193 CRCP CGRP receptor component 2 2
MIRT678293 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679532 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679669 RABAC1 Rab acceptor 1 2 2
MIRT679850 GPR75 G protein-coupled receptor 75 2 2
MIRT680533 PRIM2 DNA primase subunit 2 2 2
MIRT680563 ZNF584 zinc finger protein 584 2 2
MIRT680577 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT680849 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680888 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT680940 EVC EvC ciliary complex subunit 1 2 2
MIRT680964 SLC15A1 solute carrier family 15 member 1 2 4
MIRT681017 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681065 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT681209 ZNF638 zinc finger protein 638 2 2
MIRT681291 RFC2 replication factor C subunit 2 2 2
MIRT681366 BRI3BP BRI3 binding protein 2 2
MIRT681517 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681549 ZNF738 zinc finger protein 738 2 2
MIRT681574 ABHD15 abhydrolase domain containing 15 2 2
MIRT681597 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT681806 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681912 SLC11A2 solute carrier family 11 member 2 2 2
MIRT681953 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682037 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT682111 ITGA3 integrin subunit alpha 3 2 4
MIRT682190 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682247 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682394 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682554 EXOSC2 exosome component 2 2 2
MIRT682665 CASP8 caspase 8 2 2
MIRT683283 ZNF99 zinc finger protein 99 2 2
MIRT683359 SCARF1 scavenger receptor class F member 1 2 2
MIRT683453 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT683596 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT683661 ZNF695 zinc finger protein 695 2 2
MIRT683770 CPE carboxypeptidase E 2 2
MIRT683807 NOTO notochord homeobox 2 2
MIRT684462 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684525 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684985 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685012 CXorf56 chromosome X open reading frame 56 2 2
MIRT685072 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685115 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685477 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685831 SLC27A1 solute carrier family 27 member 1 2 2
MIRT686032 UMPS uridine monophosphate synthetase 2 2
MIRT686559 TPM3 tropomyosin 3 2 2
MIRT687287 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT687309 OTUD7B OTU deubiquitinase 7B 2 2
MIRT688085 GLUL glutamate-ammonia ligase 2 2
MIRT688168 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688584 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT688601 CYCS cytochrome c, somatic 2 2
MIRT688921 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT689285 C5AR2 complement component 5a receptor 2 2 2
MIRT689622 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690051 C6orf141 chromosome 6 open reading frame 141 2 2
MIRT690224 C5orf45 MRN complex interacting protein 2 2
MIRT690272 CAMLG calcium modulating ligand 2 2
MIRT690331 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690480 ZNF33A zinc finger protein 33A 2 2
MIRT690526 ZNF566 zinc finger protein 566 2 2
MIRT690581 MICA MHC class I polypeptide-related sequence A 2 2
MIRT690675 RPF2 ribosome production factor 2 homolog 2 2
MIRT690790 ZNF589 zinc finger protein 589 2 2
MIRT690873 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691142 HJURP Holliday junction recognition protein 2 2
MIRT691158 APOL6 apolipoprotein L6 2 2
MIRT691288 CENPM centromere protein M 2 2
MIRT691435 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT691749 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT691833 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT691885 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT691947 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692047 PAK1IP1 PAK1 interacting protein 1 2 2
MIRT692668 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692767 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT692859 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT693122 SCNM1 sodium channel modifier 1 2 2
MIRT693514 MOB3A MOB kinase activator 3A 2 2
MIRT693648 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT693688 MXRA7 matrix remodeling associated 7 2 2
MIRT694078 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT694163 SLC36A2 solute carrier family 36 member 2 2 2
MIRT694262 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT694506 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694556 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694639 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT694710 CD300LG CD300 molecule like family member g 2 2
MIRT694753 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694896 ZNF417 zinc finger protein 417 2 2
MIRT695158 BTD biotinidase 2 2
MIRT695275 CD209 CD209 molecule 2 2
MIRT695434 TCF23 transcription factor 23 2 2
MIRT695817 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT696008 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696345 SLC35D2 solute carrier family 35 member D2 2 2
MIRT696368 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT696533 C3 complement C3 2 2
MIRT696779 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT697075 PSMC4 proteasome 26S subunit, ATPase 4 2 2
MIRT697498 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT697630 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT697931 TXNDC16 thioredoxin domain containing 16 2 2
MIRT697966 TSPYL1 TSPY like 1 2 2
MIRT698237 TMEM216 transmembrane protein 216 2 2
MIRT698643 TES testin LIM domain protein 2 2
MIRT698661 TERF2 telomeric repeat binding factor 2 2 2
MIRT698974 SPAST spastin 2 2
MIRT699047 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699193 SLX4IP SLX4 interacting protein 2 2
MIRT699586 SIKE1 suppressor of IKBKE 1 2 2
MIRT699759 SEPHS1 selenophosphate synthetase 1 2 2
MIRT700350 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700402 RAB13 RAB13, member RAS oncogene family 2 2
MIRT700418 QDPR quinoid dihydropteridine reductase 2 2
MIRT700546 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT700774 PLA2G4A phospholipase A2 group IVA 2 2
MIRT700875 PER2 period circadian clock 2 2 2
MIRT700952 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT701077 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT701172 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT701479 NEK9 NIMA related kinase 9 2 2
MIRT701661 MYH9 myosin heavy chain 9 2 2
MIRT701779 MSL2 MSL complex subunit 2 2 2
MIRT702137 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT702494 KIAA1328 KIAA1328 2 2
MIRT703058 GTPBP10 GTP binding protein 10 2 2
MIRT703224 GOLGA3 golgin A3 2 2
MIRT703620 FBXO45 F-box protein 45 2 2
MIRT703657 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT703765 FAM118A family with sequence similarity 118 member A 2 2
MIRT703832 EVI5 ecotropic viral integration site 5 2 2
MIRT703862 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT704664 CLCC1 chloride channel CLIC like 1 2 2
MIRT704812 CDC73 cell division cycle 73 2 2
MIRT705608 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT705625 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT705682 ANKRD40 ankyrin repeat domain 40 2 2
MIRT705813 AKNA AT-hook transcription factor 2 2
MIRT706238 SYT15 synaptotagmin 15 2 2
MIRT706567 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT709657 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710609 ZNF555 zinc finger protein 555 2 2
MIRT711717 IREB2 iron responsive element binding protein 2 2 2
MIRT714122 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT715204 FKTN fukutin 2 2
MIRT718260 ZDHHC8 zinc finger DHHC-type containing 8 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4419b Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Cisplatin + Decitabine resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-4419b Androstenedione+Anastrozole sensitive cell line (MCF-7)

Error report submission