pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF749   
Synonyms -
Description zinc finger protein 749
Transcript NM_001023561   
Expression
Putative miRNA Targets on ZNF749
3'UTR of ZNF749
(miRNA target sites are highlighted)
>ZNF749|NM_001023561|3'UTR
   1 TGGAGTGAATGCAGGAAAGTCACCAAAACTGTCACCTCATTCAGCACCAAAAGGTTCACATCGGACCAAGAACCTATTAA
  81 TATATGTAAATCTAATGTTGAAAGAGTTCAGATGGAAATCTGCGAGGATTTCCTGCTGGGAACTACATTAAAAACATTTA
 161 TGTCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGTGGGTGGATCACCTGAGGTCAGGAGTT
 241 TGAGACCAGCCGGGCCAACATGGTGAAGCCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCAGGTGCCT
 321 GTAATCCCAGCTATTCAGGGGACTGAGGCAGGGAGCATCACTTGAACCTGGGAGGCGGAGGTTGCAGTGAACTGAGATTG
 401 TTCCATTGCACTCCAGCCTGGGTGACAGGGCGAGACTCTGTCTCAAAAAGAAAAAAATTATAATTGTGGCAAATTACAGG
 481 TAACTTAAAATCTACCATCTTAACCCATATTTAACTGTACTGTTCAGTAGTGTTAAGTCATTCGCATTGTTGTCAATTAA
 561 TATCCAGAAGTTTTTTCAACTTAATGAAACTAAAACATTATACCCTTTAAACCAGGGGTCCACAACCCCCAGGCTGCAAA
 641 CTGGTACCAGTCTGTGGCCTGTTAGGAACCGGGCCAGCATCACTACCTGAGCTTCACCTCCTGTCAGATGAGCAGCATTA
 721 GATTCTCATAGCAGCCTGAGCCCTATTGTGAACTGTGCCTGTGAGGGATCTAGGTTGTGTGCTCCTTATGAGAATCTAAC
 801 TAATACCTGATGATCTGAGGTGGGACAGTTTTATTCTGAAACTGTCTGCCCCCTCCTCTGTCCCTGATGCGTGGAAAAAT
 881 TGGCTTCCATGAAACCAGTCCCTGGTGCCAAAGAGGTTGGGGACCGCTGCTTTAAACTACTCCTCTTCCTCATTCCCTAC
 961 GCCAACCAGCCCCTGACAATACTACTGTATGAATTTTACTATAAATATCTCATATGAGGAAACTTAAGTTTTAGTCTTTT
1041 GTGACTTATTTTGAGGCTTATTTCCCTAAATGTCTTCAAGGTTTATCCATGTTGTAGCATAGCTTATGATTTTCATCTTT
1121 TTTAAAGGCCGAATAAAATCCCATTGTAGTCATGTGTCGCCTAACAAGAGGACTGTGTTCTGAGTAATCATCTTAAGGTG
1201 ATTTTGTCATTGTGTGAACAAAGAGTGTACTTACACAAACCTGAAGGGCACAGCCTATTACGCACCTAGGCTATATGATA
1281 TGGTCCATTGCGCCTCAGATATAAACCTTAACAGCATGTTACAGTATTGAATATTGTAGGTAATTGAAACACAATGATAA
1361 GTAAATGTGTATCTAAACATATCTAAGTTTCCAAAAGGTACTGTAAAAATGTATGAAAAATGGTAAAAACTTTATAGGGC
1441 ACTAACATGAACGAAGCTTGCGGGACCCCTCTGGTTGAGTCAGGGAGTGAGTTGTGAGTGAATGTGAAGCTCTAGGACAT
1521 TACTGTACCCTATTGTAGATGTTATAAACATTGTACACTTAGGCTACTCTAAATTAATTTTTTCTTTAGTAATAAATTAA
1601 CCTTAGTCTACT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGACCUACGUUUAAAAu 5'
            ||| ||  :|||||| 
Target 5' taCTGTAT--GAATTTTa 3'
983 - 998 136.00 -6.30
2
miRNA  3' aggaCCUACG--UUUAAAAu 5'
              |||  |  ||:|||| 
Target 5' atgaGGAAACTTAAGTTTTa 3'
1014 - 1033 128.00 -5.80
3
miRNA  3' aggACCUACGUUUAAaau 5'
             | |  |||||||   
Target 5' taaTTGTGGCAAATTaca 3'
461 - 478 111.00 -5.02
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN28195895 81 COSMIC
COSN17721352 421 COSMIC
COSN7450983 466 COSMIC
COSN5762376 705 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs761408540 3 dbSNP
rs989702056 17 dbSNP
rs771620706 19 dbSNP
rs1411487751 20 dbSNP
rs772682450 25 dbSNP
rs1349613026 30 dbSNP
rs1448676869 32 dbSNP
rs1420561597 39 dbSNP
rs1188650368 42 dbSNP
rs766005401 43 dbSNP
rs2240041 48 dbSNP
rs564389765 51 dbSNP
rs1390025006 55 dbSNP
rs577196210 58 dbSNP
rs1396030891 61 dbSNP
rs925895024 63 dbSNP
rs935817771 64 dbSNP
rs1306548718 67 dbSNP
rs1055998122 70 dbSNP
rs894319076 71 dbSNP
rs546239709 72 dbSNP
rs1220093549 73 dbSNP
rs1343347893 75 dbSNP
rs1282426415 81 dbSNP
rs1245753088 91 dbSNP
rs1296504338 93 dbSNP
rs562834003 111 dbSNP
rs1461602729 112 dbSNP
rs868345050 117 dbSNP
rs950150939 121 dbSNP
rs373446932 124 dbSNP
rs773142935 125 dbSNP
rs1460810667 127 dbSNP
rs1004195842 128 dbSNP
rs1177653058 130 dbSNP
rs1481692293 132 dbSNP
rs1017131423 134 dbSNP
rs1174970398 144 dbSNP
rs942151093 147 dbSNP
rs898788477 148 dbSNP
rs1232968302 151 dbSNP
rs1198716121 157 dbSNP
rs576812423 169 dbSNP
rs1321011885 170 dbSNP
rs1028875817 171 dbSNP
rs765947479 174 dbSNP
rs1313874980 178 dbSNP
rs150557324 183 dbSNP
rs187071753 187 dbSNP
rs987601926 188 dbSNP
rs1471779537 189 dbSNP
rs1161820098 196 dbSNP
rs113573126 215 dbSNP
rs1413236116 218 dbSNP
rs1450680322 220 dbSNP
rs759243620 221 dbSNP
rs1177584305 222 dbSNP
rs527879434 227 dbSNP
rs547812838 228 dbSNP
rs1362428477 233 dbSNP
rs1158945176 241 dbSNP
rs571105655 242 dbSNP
rs539718079 252 dbSNP
rs1018735593 253 dbSNP
rs1459686260 255 dbSNP
rs1242214955 256 dbSNP
rs1315272875 262 dbSNP
rs967029240 263 dbSNP
rs56405376 265 dbSNP
rs977124824 266 dbSNP
rs1258759707 267 dbSNP
rs1238189163 269 dbSNP
rs1307588483 290 dbSNP
rs549381421 291 dbSNP
rs1348865533 295 dbSNP
rs139549553 299 dbSNP
rs1243944050 305 dbSNP
rs1382306168 308 dbSNP
rs111741823 314 dbSNP
rs753772948 325 dbSNP
rs1288691336 326 dbSNP
rs1454737148 329 dbSNP
rs1311437407 330 dbSNP
rs1363065095 332 dbSNP
rs73635371 341 dbSNP
rs1257714654 344 dbSNP
rs375127646 349 dbSNP
rs1187750048 351 dbSNP
rs1425216020 358 dbSNP
rs1259359605 363 dbSNP
rs1204382268 369 dbSNP
rs1018097112 371 dbSNP
rs373349819 372 dbSNP
rs1288156815 377 dbSNP
rs915707309 378 dbSNP
rs112434277 400 dbSNP
rs572180940 401 dbSNP
rs976632107 403 dbSNP
rs1045778135 404 dbSNP
rs1483825377 406 dbSNP
rs887224800 408 dbSNP
rs534794443 418 dbSNP
rs1301771421 422 dbSNP
rs983837479 423 dbSNP
rs1038293749 430 dbSNP
rs898509246 432 dbSNP
rs1459100612 433 dbSNP
rs1371042758 436 dbSNP
rs1432996927 436 dbSNP
rs139217049 438 dbSNP
rs1265079226 444 dbSNP
rs1197131557 451 dbSNP
rs1490175460 451 dbSNP
rs562301254 460 dbSNP
rs1028590633 461 dbSNP
rs143564529 461 dbSNP
rs1337685978 464 dbSNP
rs973528593 471 dbSNP
rs916705687 477 dbSNP
rs891276619 478 dbSNP
rs1228440793 484 dbSNP
rs1168028419 490 dbSNP
rs948229817 496 dbSNP
rs750882566 498 dbSNP
rs1404842538 501 dbSNP
rs1346748604 506 dbSNP
rs1323628798 507 dbSNP
rs1388075735 508 dbSNP
rs906777683 509 dbSNP
rs1166900080 525 dbSNP
rs1411871248 525 dbSNP
rs1308905060 539 dbSNP
rs578009003 544 dbSNP
rs192821363 545 dbSNP
rs143981473 549 dbSNP
rs967080257 551 dbSNP
rs1249932547 553 dbSNP
rs1303234916 555 dbSNP
rs893490974 561 dbSNP
rs1261632278 566 dbSNP
rs1223338614 567 dbSNP
rs1331607215 568 dbSNP
rs750153174 571 dbSNP
rs1227654968 573 dbSNP
rs1011033354 578 dbSNP
rs1237541506 585 dbSNP
rs1333429525 587 dbSNP
rs576498641 626 dbSNP
rs370165935 628 dbSNP
rs899619484 630 dbSNP
rs1469165158 631 dbSNP
rs1205383245 651 dbSNP
rs535579963 656 dbSNP
rs1174196707 658 dbSNP
rs1468561199 671 dbSNP
rs1029523915 672 dbSNP
rs1179388576 677 dbSNP
rs1488324715 686 dbSNP
rs1459245956 690 dbSNP
rs1241602821 699 dbSNP
rs1203276435 702 dbSNP
rs1189840956 707 dbSNP
rs1443296931 708 dbSNP
rs1281197094 736 dbSNP
rs562198706 746 dbSNP
rs1269995896 749 dbSNP
rs1350640406 759 dbSNP
rs1307873362 764 dbSNP
rs116526374 769 dbSNP
rs751833854 770 dbSNP
rs1015314177 773 dbSNP
rs547993032 774 dbSNP
rs1359480977 776 dbSNP
rs991798770 778 dbSNP
rs34250692 781 dbSNP
rs781406007 784 dbSNP
rs969470004 785 dbSNP
rs533455557 786 dbSNP
rs971628317 798 dbSNP
rs1441548773 801 dbSNP
rs981278502 807 dbSNP
rs1169402445 819 dbSNP
rs550014969 820 dbSNP
rs1349522369 824 dbSNP
rs1239548926 825 dbSNP
rs1456644547 829 dbSNP
rs928151642 836 dbSNP
rs935560531 839 dbSNP
rs1295061836 844 dbSNP
rs1355159579 845 dbSNP
rs908383427 847 dbSNP
rs1288991540 849 dbSNP
rs1227349318 850 dbSNP
rs1391252703 864 dbSNP
rs370594271 865 dbSNP
rs1285715475 866 dbSNP
rs1428460448 867 dbSNP
rs34891421 871 dbSNP
rs1298670694 872 dbSNP
rs144908106 884 dbSNP
rs1039428913 885 dbSNP
rs1366678137 888 dbSNP
rs932691790 907 dbSNP
rs1185141288 908 dbSNP
rs899564211 910 dbSNP
rs7247347 914 dbSNP
rs891417845 916 dbSNP
rs1196414779 918 dbSNP
rs1490013325 919 dbSNP
rs534385329 926 dbSNP
rs1050886775 928 dbSNP
rs77518841 938 dbSNP
rs577863667 943 dbSNP
rs537387410 944 dbSNP
rs886964764 956 dbSNP
rs115164639 958 dbSNP
rs576543709 961 dbSNP
rs183628256 962 dbSNP
rs112149657 963 dbSNP
rs1012616895 968 dbSNP
rs193136407 974 dbSNP
rs7250024 980 dbSNP
rs969417653 983 dbSNP
rs1409636829 988 dbSNP
rs1167227619 997 dbSNP
rs1368791234 1006 dbSNP
rs1479733525 1010 dbSNP
rs548124623 1013 dbSNP
rs971297294 1016 dbSNP
rs375662601 1020 dbSNP
rs956902292 1024 dbSNP
rs988750445 1025 dbSNP
rs1457073677 1034 dbSNP
rs1258443507 1040 dbSNP
rs908353898 1044 dbSNP
rs1390748415 1059 dbSNP
rs534384707 1060 dbSNP
rs533346791 1065 dbSNP
rs1300426761 1069 dbSNP
rs1219756564 1075 dbSNP
rs7250136 1086 dbSNP
rs1039372813 1092 dbSNP
rs1229645504 1100 dbSNP
rs1313024906 1110 dbSNP
rs771629631 1119 dbSNP
rs563617961 1132 dbSNP
rs1049710868 1138 dbSNP
rs533876901 1145 dbSNP
rs1228170829 1153 dbSNP
rs933703798 1154 dbSNP
rs1435394607 1155 dbSNP
rs372256444 1155 dbSNP
rs1426702955 1159 dbSNP
rs1042681446 1160 dbSNP
rs1457051243 1161 dbSNP
rs1238337572 1164 dbSNP
rs1004039985 1177 dbSNP
rs902666686 1178 dbSNP
rs1236948572 1180 dbSNP
rs1459856773 1185 dbSNP
rs536993480 1195 dbSNP
rs548977466 1199 dbSNP
rs1313837638 1205 dbSNP
rs565497221 1211 dbSNP
rs1414812379 1214 dbSNP
rs898401007 1220 dbSNP
rs892925389 1224 dbSNP
rs1013080673 1227 dbSNP
rs1377741836 1246 dbSNP
rs1022593006 1250 dbSNP
rs1156675127 1252 dbSNP
rs553617650 1258 dbSNP
rs528190131 1262 dbSNP
rs1012800355 1263 dbSNP
rs1175323365 1264 dbSNP
rs1401994145 1267 dbSNP
rs1002721003 1273 dbSNP
rs1015488377 1278 dbSNP
rs753932117 1281 dbSNP
rs961181294 1282 dbSNP
rs905207769 1291 dbSNP
rs551182517 1292 dbSNP
rs1438609053 1296 dbSNP
rs1380359850 1297 dbSNP
rs1180174590 1299 dbSNP
rs1035103029 1300 dbSNP
rs957048479 1302 dbSNP
rs1303001373 1303 dbSNP
rs973917447 1307 dbSNP
rs762110130 1308 dbSNP
rs1258962941 1314 dbSNP
rs1027237742 1316 dbSNP
rs571504568 1317 dbSNP
rs1215796463 1322 dbSNP
rs954121037 1327 dbSNP
rs1349492632 1328 dbSNP
rs371389631 1330 dbSNP
rs537230187 1331 dbSNP
rs988309646 1344 dbSNP
rs557322815 1355 dbSNP
rs1244098930 1361 dbSNP
rs1340044361 1362 dbSNP
rs1313900353 1366 dbSNP
rs1286825998 1371 dbSNP
rs1022913298 1383 dbSNP
rs1331714760 1411 dbSNP
rs1298179403 1416 dbSNP
rs968260251 1417 dbSNP
rs184833745 1418 dbSNP
rs1360648178 1423 dbSNP
rs985961817 1428 dbSNP
rs1224791359 1430 dbSNP
rs912544299 1431 dbSNP
rs1367467130 1432 dbSNP
rs975679872 1434 dbSNP
rs920891445 1442 dbSNP
rs1258396667 1443 dbSNP
rs1482842504 1446 dbSNP
rs1265455461 1447 dbSNP
rs765598855 1453 dbSNP
rs1355916744 1454 dbSNP
rs142479105 1462 dbSNP
rs933649858 1462 dbSNP
rs908281927 1463 dbSNP
rs924222233 1469 dbSNP
rs750974081 1471 dbSNP
rs1277925561 1479 dbSNP
rs936819175 1480 dbSNP
rs1038179104 1481 dbSNP
rs898343094 1493 dbSNP
rs1384643610 1495 dbSNP
rs536124771 1499 dbSNP
rs948601664 1510 dbSNP
rs1459095303 1513 dbSNP
rs1053916735 1517 dbSNP
rs1421252622 1519 dbSNP
rs1169637813 1521 dbSNP
rs895310066 1526 dbSNP
rs375897592 1531 dbSNP
rs1416170250 1533 dbSNP
rs907163534 1540 dbSNP
rs1176139932 1545 dbSNP
rs576463536 1550 dbSNP
rs1211895505 1572 dbSNP
rs371724290 1578 dbSNP
rs1456576624 1579 dbSNP
rs1257841589 1581 dbSNP
rs1044555920 1605 dbSNP
rs1219561778 1608 dbSNP
rs1320446444 1612 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000334181.4 | 3UTR | UGAAGAAAGUUUUUGUAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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