pre-miRNA Information
pre-miRNA hsa-mir-412   
Genomic Coordinates chr14: 101065447 - 101065537
Synonyms MIRN412, hsa-mir-412, MIR412
Description Homo sapiens miR-412 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-412-3p
Sequence 54| ACUUCACCUGGUCCACUAGCCGU |76
Evidence Not_experimental
Experiments
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
rs61992671 18 GWAS
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs369997462 1 dbSNP
rs1439693090 7 dbSNP
rs1301668924 11 dbSNP
rs534204576 13 dbSNP
rs775386036 14 dbSNP
rs762832140 15 dbSNP
rs1203323285 16 dbSNP
rs61992671 18 dbSNP
rs1022012324 19 dbSNP
rs1207609936 20 dbSNP
rs139967426 21 dbSNP
rs539487075 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NKPD1   
Synonyms -
Description NTPase KAP family P-loop domain containing 1
Transcript NM_198478   
Expression
Putative miRNA Targets on NKPD1
3'UTR of NKPD1
(miRNA target sites are highlighted)
>NKPD1|NM_198478|3'UTR
   1 ATGGAGGACTTGGCGGGCAGCAGGAGGCAAGGGTTCCTCCATCTGCCCAGATGGGAGAATAGGGGGCTGGACTGGGGCCG
  81 CAACCCAGGGTCCGAATGAGCCCTGTGAGGCCCACACCCCCAGGTGAACCTGAGCCAGAGCCGTGGACATAGCTTCCAAG
 161 GAGTGCGGCCACAAGCCGGTGCCAGCATGAGAGCAGGCACAGAAGGACCAGTGAGGAAGTCAGGGTATACATGCAATAAA
 241 TGGAGGTGTTGAGAGCCCGGAGTTGCTCTCCGCATCCTGATCTGACCAGGGACCAGGCCTGCCCCGTCCTGCCACAGGGC
 321 CTGCCCCATCCTGCTAAGCCCACTTACTCCTCTGCACCATGCTGGCCTCCTCATCTGGCATCTCTGTGGCAGGAGAGGCT
 401 GCGGGGGTGGTGGGTGAGGCTGCAGAGATGACAGGTGGATGGGCCAGGTTGACTCAGGCAACATGGAGCGCCCAGGCCTC
 481 AGGGAATCCCAGTCCTTGTCCCCATGCCCTAGCTTGCCCCTCTGTGAGTAGGGCAGGGGCTGGCATTTCTGAGGATGACC
 561 TCGGTGACCTCAGCAAGCTGCTCCACCCCTAGGGTGGCTCCATTCTCAACGTAATGGGTTAGACCTCGCTGGCACCTCAG
 641 CCAGCTGGAGTGGGTGGCACTAACCTCCCCCAGACAAATAACTGTCCACAGGGTACCTGCCTTACGAGTCACTCCAGGGC
 721 CACTGGTTAGTCACTGACACTGAAGCCACTGCATCAGCCCCCTGATGAGGACAGGGAAGTTGGGCAGAGATGGGGACATA
 801 CAGGGCCCAAGCCACAGCCAGCCAGGAGGGGTTACACTAGGGCTCCCCCACTTTCCCTCTGGGCAGAGCCCTGGGCTGGG
 881 GGTGGGTGTCACTCCTCTGGGCAGTTCCTGATTCCTCACTGGTCAAATGTTCAGCCACACGCTCAGGCCCTGGGGTGCCT
 961 GGCCCAGTTCCAAGTGTGTGCCGGCAGGGGCCACAAGGGCCAACACTGAACATACCCTGGGATGAGGCTGAGGGTGTGGC
1041 TTCTGAGCCAGGGCCCTGAGGCTGGTGGAGGGGACAGCCCCCGAGGAACCTGAGAGCTCTGCAAAGGCACACACCCTCAG
1121 GCCATGGGACTGGGTCACTGACCTCACAGTTCTTTAGTTCCAAGGCTGGGCATAGCATCCAGGTCTGGCTGCAGCACCGG
1201 AGTTCTCTGGCCACAGCAATTGTCACAGGTGCATGCAGGTCAGTGGGAGCCCTCTATGATCTTCCCTGGGGCTGGGCAAG
1281 CAGAGGTGCTGTTTCCCATTCCTGGACTGACTAAGCTGGTAGGATACGCCTGGACCTCCTGGGAGCTGTTTCCCAGCAGT
1361 CAGGGAGAGCTGGCCTCAGAGGGAGAAGGATGGGGCCTCGTGACACCGTTAAGTCTGTTTCTGTAGATGTGTGGTTGGGG
1441 TCAATATATCCCTGTAGCCTCCCTTAAGCCAGTTTCAGTTGGGTTTGTTTCTTACCACCTGGAATCCAAGCTGAAAATAA
1521 ATTTTCACTCCTGTTACCAGGAGTGGGGTGCTGTGAGAGATGCTAACGTGTAGACTTGGCTGGAGGTGAGGGCAGGACTG
1601 AAGCCCCCCATGCCTCAGTAAGAAGCTGCATCAGCCTGGCCAACATGGTGAAGCCCTGTCTCTAATAAAAATACAAAAAG
1681 ATTAGCTGGGCATGGTGGTGCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGTGGGAGGATCACTTGAACCCGGGAG
1761 GTGGTGGCTGGAGCCAAGATGGTGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGACTGATTAAAAAAAAAAG
1841 CCGCAGCCTCTGTTACGTGGTACAAGCTGTGGCCAAACTGTTGGTCACTGTATCTTCACGTGGAGCTGCTATGAGAACTT
1921 GCACCTGTGTAAAGCCACGGGACCGTTGTCACGAACAAAAAAGGAGCACGGCTGACCTGTGCGCCTTTCCCAGCAATGAG
2001 TCAGGGAGCAGGTTTCCCTTCTCCACTCCCTTCCCCCATCTGCCCACTTGATCCGGGATCCTTGAGGCCCTGGGGAGCAA
2081 CAGAGCCCTAAGAGCTTCAAAGGGGCCTGGGTCCAGGAATAACTTGGTGAAGAGCTGCCTGCCACTCTGAACATCCACAT
2161 GTGACAATAAACATCTCCTGTGTTAGGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugCCGAUCACCUGGUCCACUUCa 5'
            | ||:|   ||  ||||||| 
Target 5' caGCCTGGCCAACATGGTGAAGc 3'
1632 - 1654 153.00 -14.00
2
miRNA  3' ugccgaucaccUGGUCCACUUCa 5'
                     ||: ||||||| 
Target 5' gtccaggaataACTTGGTGAAGa 3'
2111 - 2133 148.00 -12.10
3
miRNA  3' ugCCGAU-CACCUG--GUCCACUUCa 5'
            ||||: | ||::  ::|||||:| 
Target 5' gaGGCTGCGGGGGTGGTGGGTGAGGc 3'
395 - 420 143.00 -22.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30507001 15 COSMIC
COSN31512274 45 COSMIC
COSN30518703 50 COSMIC
COSN30126347 80 COSMIC
COSN8261023 95 COSMIC
COSN30568794 140 COSMIC
COSN23506074 305 COSMIC
COSN25871193 377 COSMIC
COSN20694920 507 COSMIC
COSN16878175 629 COSMIC
COSN9226669 678 COSMIC
COSN1216604 830 COSMIC
COSN20115883 845 COSMIC
COSN1216602 917 COSMIC
COSN1216600 962 COSMIC
COSN9850991 1347 COSMIC
COSN20885711 1352 COSMIC
COSN8973544 1409 COSMIC
COSN27277488 1829 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1350553127 1 dbSNP
rs777834643 8 dbSNP
rs575884785 9 dbSNP
rs369832157 14 dbSNP
rs1010462575 15 dbSNP
rs1413567168 27 dbSNP
rs1220640153 32 dbSNP
rs1318890311 39 dbSNP
rs771651440 42 dbSNP
rs1212875758 43 dbSNP
rs1040500306 53 dbSNP
rs944492981 56 dbSNP
rs888888241 57 dbSNP
rs960296085 64 dbSNP
rs190215571 73 dbSNP
rs185685640 79 dbSNP
rs895650269 80 dbSNP
rs557381207 90 dbSNP
rs866511618 102 dbSNP
rs1381099781 117 dbSNP
rs1483426228 118 dbSNP
rs1210202654 119 dbSNP
rs1256053234 121 dbSNP
rs537536772 124 dbSNP
rs1037752531 142 dbSNP
rs974324750 143 dbSNP
rs1419244012 149 dbSNP
rs1006269807 150 dbSNP
rs940155037 153 dbSNP
rs908728035 156 dbSNP
rs886245722 163 dbSNP
rs1047573094 166 dbSNP
rs1057384826 172 dbSNP
rs192224730 176 dbSNP
rs923179062 177 dbSNP
rs563805868 178 dbSNP
rs957367391 183 dbSNP
rs1468087528 184 dbSNP
rs763941672 192 dbSNP
rs867292553 195 dbSNP
rs1371775042 206 dbSNP
rs376849417 211 dbSNP
rs1343078640 217 dbSNP
rs1233725671 221 dbSNP
rs1478160167 222 dbSNP
rs1039399110 230 dbSNP
rs998743714 231 dbSNP
rs902994227 232 dbSNP
rs1186127564 241 dbSNP
rs943048988 247 dbSNP
rs117540719 255 dbSNP
rs529107934 258 dbSNP
rs979168477 259 dbSNP
rs1200818893 263 dbSNP
rs1453396997 271 dbSNP
rs565662923 272 dbSNP
rs748346982 284 dbSNP
rs966461669 291 dbSNP
rs913377975 297 dbSNP
rs1217509564 305 dbSNP
rs115379353 306 dbSNP
rs116106679 307 dbSNP
rs4330014 309 dbSNP
rs1320956289 311 dbSNP
rs758292248 315 dbSNP
rs994465958 320 dbSNP
rs1233836744 324 dbSNP
rs533293282 327 dbSNP
rs1347234306 328 dbSNP
rs1219817627 331 dbSNP
rs1284214301 333 dbSNP
rs1211021818 335 dbSNP
rs1327637198 335 dbSNP
rs117181329 340 dbSNP
rs1467801924 343 dbSNP
rs1191379900 352 dbSNP
rs940266277 355 dbSNP
rs1335277152 356 dbSNP
rs1157432611 361 dbSNP
rs1405763326 362 dbSNP
rs908815884 364 dbSNP
rs1045892312 365 dbSNP
rs752659658 366 dbSNP
rs950302402 370 dbSNP
rs1321833522 373 dbSNP
rs1016691794 375 dbSNP
rs867625253 378 dbSNP
rs1279007694 379 dbSNP
rs1349222626 382 dbSNP
rs915955041 384 dbSNP
rs886509135 386 dbSNP
rs991539812 392 dbSNP
rs1334619276 399 dbSNP
rs957341214 403 dbSNP
rs940108268 408 dbSNP
rs908647950 411 dbSNP
rs984046297 415 dbSNP
rs1451801211 424 dbSNP
rs71352254 425 dbSNP
rs1047832684 434 dbSNP
rs1410959934 437 dbSNP
rs1475042396 439 dbSNP
rs977418040 441 dbSNP
rs1473564145 447 dbSNP
rs1369206555 462 dbSNP
rs1182827120 468 dbSNP
rs369182454 469 dbSNP
rs1443884719 470 dbSNP
rs765271065 472 dbSNP
rs1197985241 474 dbSNP
rs1458145510 475 dbSNP
rs1019314784 476 dbSNP
rs531670017 482 dbSNP
rs953337999 495 dbSNP
rs1411668045 498 dbSNP
rs1289562979 500 dbSNP
rs1355333739 505 dbSNP
rs1390489342 510 dbSNP
rs943286576 512 dbSNP
rs1259501947 519 dbSNP
rs903487774 520 dbSNP
rs563001304 522 dbSNP
rs1356694900 525 dbSNP
rs1211202618 527 dbSNP
rs759655335 533 dbSNP
rs945046627 536 dbSNP
rs913639449 537 dbSNP
rs542822678 538 dbSNP
rs898938074 539 dbSNP
rs1483752062 540 dbSNP
rs991942073 550 dbSNP
rs1334394878 553 dbSNP
rs1256746279 554 dbSNP
rs1036016251 556 dbSNP
rs1189405432 556 dbSNP
rs1448242745 560 dbSNP
rs938828766 562 dbSNP
rs928804582 563 dbSNP
rs1368909132 567 dbSNP
rs187319433 571 dbSNP
rs867240442 579 dbSNP
rs887363440 592 dbSNP
rs980351730 597 dbSNP
rs1308691101 604 dbSNP
rs1375415385 606 dbSNP
rs1394798320 610 dbSNP
rs75029548 611 dbSNP
rs1323979580 616 dbSNP
rs1016540500 617 dbSNP
rs879624204 619 dbSNP
rs184055419 620 dbSNP
rs916094397 620 dbSNP
rs140405738 622 dbSNP
rs984744872 627 dbSNP
rs577961689 628 dbSNP
rs191567664 629 dbSNP
rs1026357154 632 dbSNP
rs537852115 635 dbSNP
rs754116507 636 dbSNP
rs1446246603 644 dbSNP
rs1388603706 646 dbSNP
rs901641169 649 dbSNP
rs1451529015 654 dbSNP
rs778999112 655 dbSNP
rs1169385288 657 dbSNP
rs967823150 658 dbSNP
rs1017865447 660 dbSNP
rs987801465 664 dbSNP
rs1239867064 670 dbSNP
rs1007451039 673 dbSNP
rs758347810 677 dbSNP
rs1450495267 678 dbSNP
rs1435355900 683 dbSNP
rs1289931971 686 dbSNP
rs1302130350 694 dbSNP
rs568832814 705 dbSNP
rs142470380 706 dbSNP
rs371256536 717 dbSNP
rs1256540823 719 dbSNP
rs1285841531 720 dbSNP
rs755066591 723 dbSNP
rs1241245505 725 dbSNP
rs1466466495 727 dbSNP
rs1189473483 740 dbSNP
rs1043691648 745 dbSNP
rs945015439 749 dbSNP
rs1379784092 751 dbSNP
rs1301819528 754 dbSNP
rs1178262086 755 dbSNP
rs1435892336 763 dbSNP
rs1457147312 764 dbSNP
rs1157488792 769 dbSNP
rs1331796891 775 dbSNP
rs1458040540 776 dbSNP
rs535232390 779 dbSNP
rs1364993324 786 dbSNP
rs931319747 791 dbSNP
rs1388060592 793 dbSNP
rs994701487 798 dbSNP
rs367812484 802 dbSNP
rs1335173427 803 dbSNP
rs1399239255 806 dbSNP
rs921296339 808 dbSNP
rs1360058456 812 dbSNP
rs114356221 813 dbSNP
rs1329612523 816 dbSNP
rs1014719916 817 dbSNP
rs1056186703 823 dbSNP
rs1420030220 825 dbSNP
rs1004511555 830 dbSNP
rs546862596 831 dbSNP
rs1191709995 837 dbSNP
rs533253685 845 dbSNP
rs1477643621 846 dbSNP
rs980659903 849 dbSNP
rs148195725 850 dbSNP
rs1414746090 857 dbSNP
rs948944673 859 dbSNP
rs570767618 873 dbSNP
rs894756993 881 dbSNP
rs1347800067 882 dbSNP
rs1459118841 884 dbSNP
rs1293671347 885 dbSNP
rs1369420462 886 dbSNP
rs1444929827 892 dbSNP
rs1407381623 894 dbSNP
rs1290168255 895 dbSNP
rs1350977917 896 dbSNP
rs1055877370 909 dbSNP
rs936208583 921 dbSNP
rs904615026 928 dbSNP
rs1356250625 929 dbSNP
rs1278597280 931 dbSNP
rs1482771425 933 dbSNP
rs1203051704 935 dbSNP
rs1254655372 937 dbSNP
rs985050228 940 dbSNP
rs551437552 941 dbSNP
rs1425868980 942 dbSNP
rs950682837 945 dbSNP
rs1165048402 951 dbSNP
rs911894882 955 dbSNP
rs1026278782 958 dbSNP
rs1346316757 962 dbSNP
rs976107400 977 dbSNP
rs987513196 981 dbSNP
rs1276690901 982 dbSNP
rs966543299 983 dbSNP
rs531751469 984 dbSNP
rs1363480981 991 dbSNP
rs1428648758 1005 dbSNP
rs1007791163 1006 dbSNP
rs1300923425 1007 dbSNP
rs1381090322 1013 dbSNP
rs1228607261 1017 dbSNP
rs1316030994 1025 dbSNP
rs931873010 1026 dbSNP
rs562804251 1032 dbSNP
rs1226328051 1033 dbSNP
rs1340145970 1035 dbSNP
rs921878568 1044 dbSNP
rs973229757 1060 dbSNP
rs903718269 1067 dbSNP
rs1022218866 1071 dbSNP
rs1009489792 1073 dbSNP
rs1182752786 1079 dbSNP
rs892108655 1082 dbSNP
rs781176727 1083 dbSNP
rs970398673 1085 dbSNP
rs1056160737 1094 dbSNP
rs1025046045 1114 dbSNP
rs1402044682 1142 dbSNP
rs1011899035 1149 dbSNP
rs369145932 1149 dbSNP
rs766601215 1161 dbSNP
rs1003235237 1164 dbSNP
rs1448547362 1173 dbSNP
rs904928881 1181 dbSNP
rs894724436 1182 dbSNP
rs1433153166 1183 dbSNP
rs1300027457 1191 dbSNP
rs1340164183 1192 dbSNP
rs1218683601 1194 dbSNP
rs1413903544 1198 dbSNP
rs1044857064 1199 dbSNP
rs543089587 1201 dbSNP
rs373015825 1203 dbSNP
rs1049270506 1220 dbSNP
rs1190124941 1226 dbSNP
rs147684473 1228 dbSNP
rs929571475 1231 dbSNP
rs560306080 1233 dbSNP
rs1489056449 1234 dbSNP
rs919234037 1235 dbSNP
rs147041223 1236 dbSNP
rs1041776616 1239 dbSNP
rs966098563 1242 dbSNP
rs1158222042 1246 dbSNP
rs1386201404 1254 dbSNP
rs910617786 1256 dbSNP
rs1206803545 1261 dbSNP
rs577871102 1271 dbSNP
rs1443507434 1277 dbSNP
rs1327197671 1283 dbSNP
rs968246053 1286 dbSNP
rs1273118959 1289 dbSNP
rs773593880 1290 dbSNP
rs1212912246 1291 dbSNP
rs1317409053 1296 dbSNP
rs932008755 1298 dbSNP
rs921805408 1308 dbSNP
rs1450656449 1310 dbSNP
rs201531065 1313 dbSNP
rs1220711564 1315 dbSNP
rs1353724942 1318 dbSNP
rs941812397 1323 dbSNP
rs558052561 1326 dbSNP
rs140419945 1327 dbSNP
rs575162940 1328 dbSNP
rs555096872 1330 dbSNP
rs762273473 1333 dbSNP
rs534667968 1334 dbSNP
rs904898155 1336 dbSNP
rs568406332 1340 dbSNP
rs1463961995 1348 dbSNP
rs1045175979 1353 dbSNP
rs572814200 1355 dbSNP
rs990445784 1381 dbSNP
rs1349116790 1384 dbSNP
rs535531695 1389 dbSNP
rs1230675686 1396 dbSNP
rs1280502367 1399 dbSNP
rs959034365 1400 dbSNP
rs1207715871 1406 dbSNP
rs1291499308 1407 dbSNP
rs1005311471 1408 dbSNP
rs762628317 1412 dbSNP
rs887915962 1415 dbSNP
rs1203756105 1417 dbSNP
rs1478598522 1422 dbSNP
rs548313287 1428 dbSNP
rs187883757 1431 dbSNP
rs528518085 1435 dbSNP
rs1483979261 1439 dbSNP
rs553162911 1440 dbSNP
rs1367658932 1443 dbSNP
rs16979703 1444 dbSNP
rs1473314489 1451 dbSNP
rs1239541745 1457 dbSNP
rs1161683076 1459 dbSNP
rs1020858279 1463 dbSNP
rs1425404281 1464 dbSNP
rs1160177819 1469 dbSNP
rs929498038 1470 dbSNP
rs1369318170 1472 dbSNP
rs1412208721 1482 dbSNP
rs554412866 1487 dbSNP
rs570728946 1493 dbSNP
rs1330074146 1497 dbSNP
rs1010437850 1501 dbSNP
rs890532581 1503 dbSNP
rs1203064865 1511 dbSNP
rs919495767 1514 dbSNP
rs1457666699 1518 dbSNP
rs62118467 1540 dbSNP
rs1234605733 1544 dbSNP
rs1258800734 1555 dbSNP
rs1051858623 1559 dbSNP
rs1344301675 1561 dbSNP
rs752315934 1567 dbSNP
rs769248307 1570 dbSNP
rs1255300428 1573 dbSNP
rs1440516952 1580 dbSNP
rs1189301024 1591 dbSNP
rs1312251051 1598 dbSNP
rs900514268 1602 dbSNP
rs1168106010 1604 dbSNP
rs1227570704 1611 dbSNP
rs910554854 1623 dbSNP
rs1285683401 1640 dbSNP
rs536073206 1646 dbSNP
rs907817190 1647 dbSNP
rs1399364171 1649 dbSNP
rs1048014380 1658 dbSNP
rs1288919741 1658 dbSNP
rs1394708918 1662 dbSNP
rs1336526621 1664 dbSNP
rs550864787 1674 dbSNP
rs1466715138 1680 dbSNP
rs151223945 1683 dbSNP
rs990539026 1692 dbSNP
rs1227468260 1693 dbSNP
rs1255361084 1698 dbSNP
rs959002474 1700 dbSNP
rs1202005095 1703 dbSNP
rs1263515059 1708 dbSNP
rs1464227043 1718 dbSNP
rs924969299 1723 dbSNP
rs987960447 1734 dbSNP
rs1246383924 1735 dbSNP
rs1163678338 1739 dbSNP
rs569210301 1742 dbSNP
rs956560810 1750 dbSNP
rs182388335 1755 dbSNP
rs1416431909 1756 dbSNP
rs1003467464 1758 dbSNP
rs969368113 1759 dbSNP
rs770739294 1761 dbSNP
rs1020572608 1766 dbSNP
rs969428531 1766 dbSNP
rs1023315894 1770 dbSNP
rs1439692727 1774 dbSNP
rs1239305177 1779 dbSNP
rs1005688316 1786 dbSNP
rs888176166 1789 dbSNP
rs1180642242 1792 dbSNP
rs868495241 1798 dbSNP
rs113140337 1805 dbSNP
rs777761880 1806 dbSNP
rs1382344418 1808 dbSNP
rs1040988284 1810 dbSNP
rs944985466 1821 dbSNP
rs1030390193 1822 dbSNP
rs1283774616 1830 dbSNP
rs1328260265 1833 dbSNP
rs1206538308 1840 dbSNP
rs996278149 1840 dbSNP
rs889086317 1842 dbSNP
rs1205865525 1843 dbSNP
rs1266750423 1847 dbSNP
rs1237677512 1856 dbSNP
rs1037694827 1857 dbSNP
rs1309854019 1859 dbSNP
rs1050431461 1863 dbSNP
rs1430557145 1890 dbSNP
rs1472480715 1892 dbSNP
rs946728420 1899 dbSNP
rs1346640013 1900 dbSNP
rs1453991295 1904 dbSNP
rs1292524198 1918 dbSNP
rs560218810 1922 dbSNP
rs988264745 1928 dbSNP
rs1406206744 1938 dbSNP
rs1283876422 1939 dbSNP
rs935114696 1944 dbSNP
rs927828846 1945 dbSNP
rs982411092 1946 dbSNP
rs949208574 1952 dbSNP
rs546763839 1953 dbSNP
rs1054470 1962 dbSNP
rs1023994678 1968 dbSNP
rs8108762 1969 dbSNP
rs80182863 1970 dbSNP
rs1381519113 1974 dbSNP
rs1025343865 1976 dbSNP
rs993879522 1983 dbSNP
rs897964304 1986 dbSNP
rs1419980435 1990 dbSNP
rs1163675246 1992 dbSNP
rs1431893138 1996 dbSNP
rs1019124277 2006 dbSNP
rs754812693 2009 dbSNP
rs575895689 2012 dbSNP
rs889362124 2019 dbSNP
rs559429199 2021 dbSNP
rs1369949440 2026 dbSNP
rs1051152806 2030 dbSNP
rs1299759844 2037 dbSNP
rs1373788375 2038 dbSNP
rs1395193538 2041 dbSNP
rs1312305387 2043 dbSNP
rs1320117201 2047 dbSNP
rs546585875 2054 dbSNP
rs113257925 2055 dbSNP
rs1203641580 2058 dbSNP
rs1261281823 2058 dbSNP
rs913440467 2064 dbSNP
rs893815341 2073 dbSNP
rs572927360 2075 dbSNP
rs545930512 2077 dbSNP
rs1181618380 2078 dbSNP
rs989088761 2081 dbSNP
rs1052487723 2087 dbSNP
rs955018399 2088 dbSNP
rs1352760257 2093 dbSNP
rs935417845 2094 dbSNP
rs1389030570 2103 dbSNP
rs1030484765 2104 dbSNP
rs1172479033 2115 dbSNP
rs1354985925 2119 dbSNP
rs1286408396 2125 dbSNP
rs927765959 2127 dbSNP
rs553124180 2140 dbSNP
rs76598479 2141 dbSNP
rs35070962 2156 dbSNP
rs1300074874 2161 dbSNP
rs556902530 2165 dbSNP
rs1158278141 2166 dbSNP
rs1016398521 2167 dbSNP
rs916491793 2168 dbSNP
rs1369345589 2171 dbSNP
rs549682648 2175 dbSNP
rs1364587811 2176 dbSNP
rs1295928663 2178 dbSNP
rs1275782585 2179 dbSNP
rs1308568006 2181 dbSNP
rs750619187 2182 dbSNP
rs1398961632 2184 dbSNP
rs984041215 2185 dbSNP
rs1361595886 2191 dbSNP
rs529968793 2195 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000317951.4 | 3UTR | UGAAGAGCUGCCUGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
138 hsa-miR-412-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT005780 ACVR1C activin A receptor type 1C 1 1
MIRT062013 YOD1 YOD1 deubiquitinase 2 2
MIRT345112 ATXN7L3 ataxin 7 like 3 2 2
MIRT383735 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 2
MIRT396956 CELF1 CUGBP Elav-like family member 1 2 2
MIRT439280 XIAP X-linked inhibitor of apoptosis 1 1
MIRT439313 VAT1 vesicle amine transport 1 1 1
MIRT439375 TUBA1A tubulin alpha 1a 1 1
MIRT439418 TMOD1 tropomodulin 1 1 1
MIRT439503 SURF4 surfeit 4 1 1
MIRT439563 SON SON DNA binding protein 1 1
MIRT439598 SLC3A2 solute carrier family 3 member 2 1 1
MIRT439670 SETD1B SET domain containing 1B 1 1
MIRT439767 RMND5A required for meiotic nuclear division 5 homolog A 1 1
MIRT439922 PPL periplakin 1 1
MIRT439947 PLEKHA6 pleckstrin homology domain containing A6 1 1
MIRT439952 PLCB4 phospholipase C beta 4 1 1
MIRT439961 PKD1 polycystin 1, transient receptor potential channel interacting 1 1
MIRT440005 PEG3 paternally expressed 3 1 1
MIRT440061 OSBPL8 oxysterol binding protein like 8 1 1
MIRT440166 MYH14 myosin heavy chain 14 1 1
MIRT440276 MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 1 1
MIRT440437 IPO13 importin 13 1 1
MIRT440441 INTS3 integrator complex subunit 3 1 1
MIRT440448 INS insulin 1 1
MIRT440461 IGF2R insulin like growth factor 2 receptor 1 1
MIRT440472 IARS isoleucyl-tRNA synthetase 1 1
MIRT440530 GUCY1A3 guanylate cyclase 1 soluble subunit alpha 1 1
MIRT440542 GOLGA2 golgin A2 1 1
MIRT440569 GIGYF1 GRB10 interacting GYF protein 1 1 1
MIRT440608 FTSJD2 cap methyltransferase 1 1 1
MIRT440750 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 1 1
MIRT440781 DOT1L DOT1 like histone lysine methyltransferase 1 1
MIRT440804 DNAJA4 DnaJ heat shock protein family (Hsp40) member A4 1 1
MIRT440867 CSDE1 cold shock domain containing E1 1 1
MIRT440890 CPEB4 cytoplasmic polyadenylation element binding protein 4 1 1
MIRT440917 COL1A1 collagen type I alpha 1 chain 1 1
MIRT440967 CDH22 cadherin 22 1 1
MIRT440968 CDH2 cadherin 2 1 1
MIRT441024 CALR calreticulin 1 1
MIRT441278 ACTB actin beta 1 1
MIRT448421 TNFAIP3 TNF alpha induced protein 3 2 2
MIRT462833 BCL3 B-cell CLL/lymphoma 3 2 2
MIRT465062 TSR1 TSR1, ribosome maturation factor 2 2
MIRT476050 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT485318 MZT1 mitotic spindle organizing protein 1 2 4
MIRT493584 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 6
MIRT494567 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497393 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT503250 ZNF257 zinc finger protein 257 2 10
MIRT503656 ZNF138 zinc finger protein 138 2 10
MIRT505882 RNF219 ring finger protein 219 2 2
MIRT507525 DSTN destrin, actin depolymerizing factor 2 4
MIRT510663 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT514682 ZNF701 zinc finger protein 701 2 4
MIRT515370 ZNF208 zinc finger protein 208 2 6
MIRT525237 KCNJ12 potassium voltage-gated channel subfamily J member 12 2 2
MIRT527963 MTAP methylthioadenosine phosphorylase 2 2
MIRT528482 STAMBPL1 STAM binding protein like 1 2 2
MIRT529909 C1orf64 steroid receptor associated and regulated protein 2 4
MIRT531558 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT532234 KLF2 Kruppel like factor 2 2 4
MIRT532480 HOXA13 homeobox A13 2 2
MIRT535544 P2RY2 purinergic receptor P2Y2 2 2
MIRT547311 NR1D2 nuclear receptor subfamily 1 group D member 2 2 2
MIRT551795 ZNF117 zinc finger protein 117 2 4
MIRT554939 RAP1A RAP1A, member of RAS oncogene family 2 2
MIRT558171 EIF5A2 eukaryotic translation initiation factor 5A2 2 2
MIRT568771 LY6K lymphocyte antigen 6 family member K 2 2
MIRT570766 ZNF99 zinc finger protein 99 2 2
MIRT572405 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT573396 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT610403 RXRB retinoid X receptor beta 2 2
MIRT610886 SCN8A sodium voltage-gated channel alpha subunit 8 2 2
MIRT611197 TMEM105 transmembrane protein 105 2 2
MIRT611244 ZNF550 zinc finger protein 550 2 2
MIRT615669 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 4
MIRT617974 DOCK4 dedicator of cytokinesis 4 2 2
MIRT619150 ZNF326 zinc finger protein 326 2 2
MIRT619608 MKKS McKusick-Kaufman syndrome 2 2
MIRT621053 DGKD diacylglycerol kinase delta 2 2
MIRT623665 HRK harakiri, BCL2 interacting protein 2 2
MIRT624883 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT624939 MARCH2 membrane associated ring-CH-type finger 2 2 2
MIRT634198 TMOD2 tropomodulin 2 2 4
MIRT636727 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT637741 POLR3K RNA polymerase III subunit K 2 2
MIRT638002 ZC3H13 zinc finger CCCH-type containing 13 2 2
MIRT640395 ZNF785 zinc finger protein 785 2 2
MIRT640505 ANTXR1 anthrax toxin receptor 1 2 2
MIRT641293 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT641863 STOML1 stomatin like 1 2 2
MIRT642600 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT642895 CASP1 caspase 1 2 2
MIRT643967 FHL2 four and a half LIM domains 2 2 4
MIRT645237 KCTD12 potassium channel tetramerization domain containing 12 2 2
MIRT646621 CENPL centromere protein L 2 2
MIRT648620 CYB561A3 cytochrome b561 family member A3 2 2
MIRT648908 ZNF551 zinc finger protein 551 2 2
MIRT649439 HIBADH 3-hydroxyisobutyrate dehydrogenase 2 2
MIRT650637 LTF lactotransferrin 2 2
MIRT650971 STARD3NL STARD3 N-terminal like 2 2
MIRT651067 ZNF518B zinc finger protein 518B 2 4
MIRT652384 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT653958 SEPN1 selenoprotein N 2 2
MIRT656885 KIF1C kinesin family member 1C 2 2
MIRT657965 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT658080 FOXR2 forkhead box R2 2 2
MIRT662570 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT663089 METTL10 EEF1A lysine methyltransferase 2 2 2
MIRT683705 ZNF195 zinc finger protein 195 2 2
MIRT683835 ZNF682 zinc finger protein 682 2 2
MIRT706811 APOL4 apolipoprotein L4 2 2
MIRT707575 DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 2 2
MIRT708606 ZNF260 zinc finger protein 260 2 2
MIRT708859 TMSB4X thymosin beta 4, X-linked 2 2
MIRT709861 PDIK1L PDLIM1 interacting kinase 1 like 2 2
MIRT709987 RBM41 RNA binding motif protein 41 2 2
MIRT710098 KPNA5 karyopherin subunit alpha 5 2 2
MIRT710211 ENAH ENAH, actin regulator 2 2
MIRT710868 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 2 2
MIRT710986 SUSD5 sushi domain containing 5 2 2
MIRT711460 RNF145 ring finger protein 145 2 2
MIRT712302 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT713609 SYTL4 synaptotagmin like 4 2 2
MIRT713789 MAK16 MAK16 homolog 2 2
MIRT715480 MYO9B myosin IXB 2 2
MIRT716328 POU5F1 POU class 5 homeobox 1 2 2
MIRT717252 TMEM246 transmembrane protein 246 2 2
MIRT718077 CLIC5 chloride intracellular channel 5 2 2
MIRT718463 EED embryonic ectoderm development 2 2
MIRT718645 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT718982 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT721078 RPS9 ribosomal protein S9 2 2
MIRT721419 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT721863 CENPJ centromere protein J 2 2
MIRT722492 PNKD paroxysmal nonkinesigenic dyskinesia 2 2
MIRT723391 CALN1 calneuron 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-412 Gemcitabine approved 60750 Northern blot Mz-ChA-1 human cholangiocarcinoma cell lines 16762633 2006 down-regulated
miR-412 Progesterone approved 5994 Microarray Breast cancer 22330642 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-412 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-412 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-412-3p Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (RKO)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (HCT-116)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved sensitive High Anaplastic Thyroid Cancer tissue
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM47)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM43)
hsa-miR-412-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-412-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-412-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR1)
hsa-miR-412-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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