pre-miRNA Information
pre-miRNA hsa-mir-6132   
Genomic Coordinates chr7: 117020211 - 117020319
Description Homo sapiens miR-6132 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6132
Sequence 21| AGCAGGGCUGGGGAUUGCA |39
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1272646274 4 dbSNP
rs1211969145 8 dbSNP
rs1310278496 11 dbSNP
rs1044115534 13 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CACFD1   
Synonyms C9orf7, D9S2135, FLOWER
Description calcium channel flower domain containing 1
Transcript NM_001135775   
Other Transcripts NM_017586   
Expression
Putative miRNA Targets on CACFD1
3'UTR of CACFD1
(miRNA target sites are highlighted)
>CACFD1|NM_001135775|3'UTR
   1 AGGGCTGGGCGCCCCTCCCTCCCTGTCCCCTCTTCTGGCTCTGTGTGGGTCCAAGTGAGGCCTGGACTGTCCACGCTGAG
  81 GCACAGCCTGGAGAGGGGCCTTTGCACGTGTCCCTACACCTGGAGTCCTCTGCTCCTTTCTCCAGACTGGCTTAAGCCAG
 161 GAGCCACTGGCTGCTGGTGTGAGGGTCTGGGCTGCTGGACTTGAGGCAGAGCCTGCAGCAGCTGTGTGGACACTACCCAG
 241 CCCTACTCCTCTGCTGGGTGGGTCTGCAGATCTCACACCACAGACAGGGCTGCCTGTGACCTGCTGTGACCTGGGAGCAG
 321 CTTCCCCTGGAGATGCTGGTCCTGGCTTGAGGGGAGGGGCAAGTGGGACCCTGCCACCTGGGCACTGAGCAGAGGGACCT
 401 CCCCCAGCTCTCTTAGCAGGTGGAGCCCCAGGGCCTGGGACAGCCTGCCGCTGCCAGCAACCTCCCACTGCTGCCTAGGG
 481 TGCAGCGCCCACTGTCACCCTGCCTTCTGAAGAAGCCCACAGGGCTCCTAAGGTGCACCCCGGTACCTGGAACTGCAGCC
 561 TTGGCAGTGACTGGACAGCTGGGTGGGGGATGCTCCCTGCTGGCCCTGGGAACCTTGGACAGGCCACCTCAAGGCCCCTC
 641 GGCTGCCCCTCCTCCCTGGGCCTGCTGGGGCCCCTAGGTTCTGCCCATCACCCCCCGCCCCTGCTGGCCTTGGTGCTAAG
 721 GAAGTGGGGAGAGCAGGCTCTCCCTGGCACCGAGGGTGCCCACCCTCTCCCTGGTGTGGCCCCGTCAACATCAGCCACAG
 801 CCCAGCCCCATTAGTGGGTTAGTGGGTCTGACCTCAGCCCCACTCAGGTGCTCCTGCTGGCCTGCCCAAGCCCTGCCCTC
 881 AGGGAGCTTCTGCCTTTTAAGAACTGGGCAGAGGCCACAGTCACCTCCCCACACAGAGCTGTCCCCACTGCCCTGGGTGC
 961 CAGGCTGTCCGGAGCCAGGCCTACCCAGGGAGGATGCAGAGAGCTGGTGCCCAGGATGTGCACCCCCATATTCCCTCTGC
1041 CCTGTGGCCTCAGCCCGCTGGCCTCTCTGACCGTGAGGCTGGCTCTCAGCCATCGGGCAGGTGCCTGGTCGGGCCTGGCT
1121 TAGCCCAGGTGGGGTTTGGCAGAAGCGGGCGGGTGTGGAAGATATTCCATCTGGGGCCAACCCCAGGCTGGGCCTGCGCT
1201 GAGCTTCTGGAGCGCAGGTACTGGGTCTTGCTAAGTGAACTGTTTCCCAGGAACACCTCTCGGGCCCATCTGCGTCTGAG
1281 GCTGGGAGTGGCATCTGAGGCCGGGAGTGGCATCTGAGGCCAGGAGTGGCAGGCTGGTGGGCTGGGCGTGGGGTTTTCTG
1361 GGCCCTGCCCAGTACTGCCCTGGGGACTTGGTGGGCTCCTGGGTCAGCAGCATCCCACCCCTGGGAGTCTGGCCAGCTGA
1441 GCCCCAGGGTGGCAGGGGCATTATAGCCTGGTGGACATGTGCCTTCAGGGTTCCTCCGGGGCCACCTTCCTCAGGCCAGT
1521 GCTGGGTTCAAAGGGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATATGTGTGTGGGTGCACACATC
1601 TGTCCCATGTATGCAGTGAGACCTGTCTACCTCCCACAAGGAGCAAGGGCTCTGCCCGCCCTCTGCTCATTCCTACCCAG
1681 GTAGTGGGACCCCGGGCCCCCTTCTGCCTGGCTTGCCTGCTTCTGCCCTTTCCAGAGGGGTCTCACTGACAGCCAGAGAC
1761 AGCAGGAGAAGGGTTGGCTGTGGATCAAGGAAGGCTGCCCCTGTACCCTGTGGGGAAATGGTGGGTGCATGGCTGGATGC
1841 AGAGGTGGAAGGCCCTGGGCCACAGGCGAGAGTGGGCGTGTCACCTGTCCCAGGTTCCCAGCAAGTCTGCAGCTGTGCAG
1921 TCCTGGGGTCCCTGACCCTGTCGCCCAGGGGGCGTGCTGTCCAGCAGGGGCCCTGCCTTGCAAGGAACGTCTCTTCCGGC
2001 GGCTGGGCCGCTCCTGCCTGGTCTGGGCTGTGTGTGGCGCCCTTTCCTCCTTGTTTGTTCCTCTGTGTTCTGTGTGCGTC
2081 TTAAGCAATAAAGCGTGGCCGTGGCTCGCGTGCCTGCCCTCTGCTCCCTTCTGCAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acguuaGGGGUCGGGACGa 5'
                ||| |||||||| 
Target 5' ggcctgCCCAAGCCCTGCc 3'
859 - 877 157.00 -22.30
2
miRNA  3' acguuAGGGGUCGGGACGa 5'
               |:|: :||||||| 
Target 5' gggttTTCTGGGCCCTGCc 3'
1351 - 1369 150.00 -17.70
3
miRNA  3' acGUUAGG-GGU---CGGGACGa 5'
            | :|||  ||   ||||||| 
Target 5' tgCTGTCCAGCAGGGGCCCTGCc 3'
1955 - 1977 145.00 -18.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM9288659 20 COSMIC
COSM7279614 23 COSMIC
COSM4987891 46 COSMIC
COSM9452919 52 COSMIC
COSN31603745 76 COSMIC
COSN30544954 94 COSMIC
COSN32057845 542 COSMIC
COSN28233146 659 COSMIC
COSN28386404 697 COSMIC
COSN14597912 758 COSMIC
COSN27645660 772 COSMIC
COSN31963121 775 COSMIC
COSN14717462 824 COSMIC
COSN1374766 908 COSMIC
COSN4887094 1073 COSMIC
COSN8520191 1303 COSMIC
COSN20106706 1304 COSMIC
COSN8520192 1304 COSMIC
COSN8520195 1306 COSMIC
COSN28796851 1323 COSMIC
COSN30540560 1482 COSMIC
COSN31593753 1492 COSMIC
COSN26465393 1517 COSMIC
COSN32061866 1567 COSMIC
COSN24641479 1571 COSMIC
COSN26578905 1575 COSMIC
COSN26572115 1610 COSMIC
COSN23113542 1623 COSMIC
COSN8296312 2002 COSMIC
COSN27897071 2120 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs376649019 8 dbSNP
rs891468452 10 dbSNP
rs781793507 11 dbSNP
rs867108595 12 dbSNP
rs782066008 15 dbSNP
rs782725851 16 dbSNP
rs1403979404 17 dbSNP
rs587717952 17 dbSNP
rs1296089467 18 dbSNP
rs1040288710 19 dbSNP
rs1373406949 28 dbSNP
rs782634397 29 dbSNP
rs781883183 31 dbSNP
rs782539600 40 dbSNP
rs180905434 44 dbSNP
rs371182912 46 dbSNP
rs1443064760 49 dbSNP
rs587677414 50 dbSNP
rs587732900 53 dbSNP
rs1194268911 71 dbSNP
rs587612794 76 dbSNP
rs986959224 78 dbSNP
rs782264566 81 dbSNP
rs782406708 82 dbSNP
rs1017916608 86 dbSNP
rs1314946159 88 dbSNP
rs1244967325 97 dbSNP
rs889917257 108 dbSNP
rs587669280 109 dbSNP
rs963719995 115 dbSNP
rs1016997393 118 dbSNP
rs961386955 120 dbSNP
rs1364949324 129 dbSNP
rs990052559 134 dbSNP
rs914516244 136 dbSNP
rs1473192548 141 dbSNP
rs587747454 142 dbSNP
rs376264870 143 dbSNP
rs183595456 147 dbSNP
rs1207805634 152 dbSNP
rs186548485 160 dbSNP
rs41297223 162 dbSNP
rs1056967241 169 dbSNP
rs1291741385 180 dbSNP
rs1210932023 182 dbSNP
rs759338704 194 dbSNP
rs936147882 198 dbSNP
rs1237886180 199 dbSNP
rs989859104 201 dbSNP
rs1289821749 213 dbSNP
rs1402947808 214 dbSNP
rs948081651 225 dbSNP
rs1054380 227 dbSNP
rs1038589283 235 dbSNP
rs1324185447 236 dbSNP
rs1406972199 240 dbSNP
rs898786936 241 dbSNP
rs587645650 245 dbSNP
rs1456759210 246 dbSNP
rs1413056516 256 dbSNP
rs587701221 267 dbSNP
rs1184575799 277 dbSNP
rs1479689308 291 dbSNP
rs1268562478 294 dbSNP
rs1200238120 299 dbSNP
rs587774762 303 dbSNP
rs1453767110 310 dbSNP
rs1281545305 314 dbSNP
rs1204098894 326 dbSNP
rs1329231954 333 dbSNP
rs1269677435 334 dbSNP
rs144436977 338 dbSNP
rs1322584338 339 dbSNP
rs1275182194 353 dbSNP
rs931890039 360 dbSNP
rs1050310864 378 dbSNP
rs887616036 379 dbSNP
rs1006019969 383 dbSNP
rs1161674784 397 dbSNP
rs1468392959 398 dbSNP
rs781847734 409 dbSNP
rs1424911730 413 dbSNP
rs1173464699 417 dbSNP
rs1479201766 423 dbSNP
rs1017043052 430 dbSNP
rs1188453453 445 dbSNP
rs587691166 446 dbSNP
rs587751197 450 dbSNP
rs1460553598 451 dbSNP
rs1278872500 465 dbSNP
rs994193934 474 dbSNP
rs1007949147 479 dbSNP
rs1024724586 484 dbSNP
rs587637086 487 dbSNP
rs1366058302 488 dbSNP
rs980767641 490 dbSNP
rs1034566881 494 dbSNP
rs957788574 505 dbSNP
rs866276689 514 dbSNP
rs587721205 522 dbSNP
rs1416557566 524 dbSNP
rs989854311 526 dbSNP
rs1168540109 528 dbSNP
rs1021544051 536 dbSNP
rs9645011 540 dbSNP
rs587659030 542 dbSNP
rs782288675 543 dbSNP
rs922922713 547 dbSNP
rs587714513 548 dbSNP
rs782421065 554 dbSNP
rs1273600029 556 dbSNP
rs916705557 561 dbSNP
rs587612527 575 dbSNP
rs1038301686 581 dbSNP
rs941871299 584 dbSNP
rs117791022 589 dbSNP
rs587711912 594 dbSNP
rs1285060521 600 dbSNP
rs1450412126 604 dbSNP
rs930221679 606 dbSNP
rs1307743080 609 dbSNP
rs1430787387 619 dbSNP
rs1047775181 631 dbSNP
rs1373013860 637 dbSNP
rs782342430 641 dbSNP
rs142538394 642 dbSNP
rs1413820931 648 dbSNP
rs1183266464 649 dbSNP
rs587663844 652 dbSNP
rs781982361 655 dbSNP
rs1468224604 656 dbSNP
rs1008835050 661 dbSNP
rs587726993 665 dbSNP
rs899616500 671 dbSNP
rs1182708331 673 dbSNP
rs1011338357 674 dbSNP
rs34048304 684 dbSNP
rs1220712385 686 dbSNP
rs1321222012 687 dbSNP
rs782407674 688 dbSNP
rs1230247702 691 dbSNP
rs1371389292 691 dbSNP
rs1287954936 692 dbSNP
rs1410867860 693 dbSNP
rs957606927 694 dbSNP
rs587682869 697 dbSNP
rs1166214883 698 dbSNP
rs1011725874 705 dbSNP
rs1410854830 717 dbSNP
rs1182414424 734 dbSNP
rs967465121 735 dbSNP
rs998752134 736 dbSNP
rs1473479561 738 dbSNP
rs1266450805 739 dbSNP
rs1190581459 746 dbSNP
rs1488730838 748 dbSNP
rs587762575 752 dbSNP
rs959898931 753 dbSNP
rs991317451 777 dbSNP
rs1267792030 780 dbSNP
rs967134579 781 dbSNP
rs976245693 783 dbSNP
rs1299558984 784 dbSNP
rs111275023 785 dbSNP
rs1368987933 787 dbSNP
rs1295798357 793 dbSNP
rs1428088811 799 dbSNP
rs1387252114 801 dbSNP
rs1159474549 803 dbSNP
rs587635821 806 dbSNP
rs923007525 807 dbSNP
rs1175025214 809 dbSNP
rs969407750 816 dbSNP
rs3094380 824 dbSNP
rs1184681361 825 dbSNP
rs188850918 826 dbSNP
rs1247447804 833 dbSNP
rs587619896 834 dbSNP
rs909144560 841 dbSNP
rs919898054 852 dbSNP
rs1254470144 858 dbSNP
rs941923704 859 dbSNP
rs1313117005 866 dbSNP
rs1304117593 867 dbSNP
rs587693201 869 dbSNP
rs1226775917 881 dbSNP
rs1363872890 885 dbSNP
rs1320565912 888 dbSNP
rs929997361 889 dbSNP
rs1436853808 893 dbSNP
rs146613050 898 dbSNP
rs919097184 910 dbSNP
rs1466399625 916 dbSNP
rs1360630500 925 dbSNP
rs181211508 926 dbSNP
rs1448723345 931 dbSNP
rs1189359701 935 dbSNP
rs1389644429 935 dbSNP
rs1046249151 942 dbSNP
rs907254543 958 dbSNP
rs1001971811 961 dbSNP
rs944210947 971 dbSNP
rs1258094713 974 dbSNP
rs1039860546 975 dbSNP
rs1203645198 982 dbSNP
rs1342004642 985 dbSNP
rs893431053 986 dbSNP
rs1338163312 991 dbSNP
rs900003684 992 dbSNP
rs1311595008 1007 dbSNP
rs1011778180 1017 dbSNP
rs1020459996 1022 dbSNP
rs1305889045 1027 dbSNP
rs1428852007 1049 dbSNP
rs967522686 1057 dbSNP
rs1170379546 1058 dbSNP
rs1431757656 1061 dbSNP
rs368081892 1064 dbSNP
rs587714377 1068 dbSNP
rs1187147449 1073 dbSNP
rs1042839149 1074 dbSNP
rs1258721495 1077 dbSNP
rs997672166 1078 dbSNP
rs1482933560 1090 dbSNP
rs1276030327 1095 dbSNP
rs902834650 1096 dbSNP
rs1353679595 1102 dbSNP
rs1264278132 1103 dbSNP
rs1245081843 1105 dbSNP
rs1030522939 1111 dbSNP
rs71503201 1112 dbSNP
rs782051760 1115 dbSNP
rs1409030665 1120 dbSNP
rs1035606156 1125 dbSNP
rs960195961 1127 dbSNP
rs1012790576 1131 dbSNP
rs1022730616 1135 dbSNP
rs3094379 1136 dbSNP
rs974116878 1147 dbSNP
rs1157183167 1148 dbSNP
rs782505692 1151 dbSNP
rs951410380 1152 dbSNP
rs1184972572 1155 dbSNP
rs981955880 1166 dbSNP
rs587716823 1169 dbSNP
rs756760532 1170 dbSNP
rs1227345750 1172 dbSNP
rs587593830 1178 dbSNP
rs983221649 1181 dbSNP
rs912572319 1194 dbSNP
rs944247768 1198 dbSNP
rs111414989 1199 dbSNP
rs921401123 1206 dbSNP
rs116579078 1214 dbSNP
rs587729777 1215 dbSNP
rs1318817400 1218 dbSNP
rs902968052 1219 dbSNP
rs1456846854 1220 dbSNP
rs587625639 1223 dbSNP
rs903418412 1230 dbSNP
rs934437281 1242 dbSNP
rs781819146 1246 dbSNP
rs780506445 1248 dbSNP
rs1477241136 1252 dbSNP
rs1057165863 1256 dbSNP
rs895503209 1257 dbSNP
rs1012758091 1258 dbSNP
rs998115182 1260 dbSNP
rs1022866395 1262 dbSNP
rs1245625735 1263 dbSNP
rs1207720258 1274 dbSNP
rs1269617243 1275 dbSNP
rs57753338 1275 dbSNP
rs587682679 1275 dbSNP
rs782009547 1275 dbSNP
rs782818234 1275 dbSNP
rs1343996937 1281 dbSNP
rs1235267080 1284 dbSNP
rs372595083 1284 dbSNP
rs565448328 1284 dbSNP
rs782769270 1284 dbSNP
rs1295418649 1285 dbSNP
rs1434442395 1291 dbSNP
rs367841108 1294 dbSNP
rs1320496629 1295 dbSNP
rs62576013 1303 dbSNP
rs782221117 1304 dbSNP
rs782725242 1304 dbSNP
rs971693915 1308 dbSNP
rs1387798615 1313 dbSNP
rs1187452719 1322 dbSNP
rs373024776 1323 dbSNP
rs951510016 1326 dbSNP
rs1243531409 1327 dbSNP
rs982889295 1331 dbSNP
rs868409718 1333 dbSNP
rs974257150 1337 dbSNP
rs904837984 1339 dbSNP
rs965381880 1348 dbSNP
rs587743683 1349 dbSNP
rs921536282 1353 dbSNP
rs587616734 1354 dbSNP
rs1001842155 1355 dbSNP
rs1296774022 1361 dbSNP
rs979307120 1371 dbSNP
rs1365991895 1384 dbSNP
rs924807936 1386 dbSNP
rs1272168067 1389 dbSNP
rs934384423 1391 dbSNP
rs1056898113 1396 dbSNP
rs1340254152 1399 dbSNP
rs1335206295 1401 dbSNP
rs895459583 1403 dbSNP
rs1369319374 1406 dbSNP
rs782757817 1419 dbSNP
rs1420950387 1433 dbSNP
rs1179791337 1444 dbSNP
rs782268891 1446 dbSNP
rs914636428 1450 dbSNP
rs1189854060 1451 dbSNP
rs947405134 1455 dbSNP
rs782096392 1456 dbSNP
rs1273906457 1458 dbSNP
rs1205713105 1465 dbSNP
rs948414596 1467 dbSNP
rs1275156522 1480 dbSNP
rs1041681041 1486 dbSNP
rs1044289357 1490 dbSNP
rs1355970637 1492 dbSNP
rs899121415 1495 dbSNP
rs587702401 1498 dbSNP
rs372667133 1499 dbSNP
rs1307971336 1500 dbSNP
rs933579532 1501 dbSNP
rs1026527464 1502 dbSNP
rs886292009 1503 dbSNP
rs1162151581 1510 dbSNP
rs1004673575 1511 dbSNP
rs1404212788 1517 dbSNP
rs1414158771 1518 dbSNP
rs1166632154 1523 dbSNP
rs1471495910 1527 dbSNP
rs1250714580 1532 dbSNP
rs879666970 1535 dbSNP
rs1219514514 1536 dbSNP
rs1244887899 1536 dbSNP
rs889290529 1536 dbSNP
rs1008115148 1537 dbSNP
rs112337436 1537 dbSNP
rs1159693883 1537 dbSNP
rs1190536707 1537 dbSNP
rs1215818089 1537 dbSNP
rs1248243009 1537 dbSNP
rs1253625811 1537 dbSNP
rs1376220227 1537 dbSNP
rs1420620596 1537 dbSNP
rs1437176611 1537 dbSNP
rs1488203468 1537 dbSNP
rs36075119 1537 dbSNP
rs59342550 1537 dbSNP
rs72336869 1537 dbSNP
rs782137955 1537 dbSNP
rs782367808 1537 dbSNP
rs782425688 1537 dbSNP
rs878872235 1537 dbSNP
rs878909509 1537 dbSNP
rs879145200 1537 dbSNP
rs879193322 1537 dbSNP
rs879232588 1537 dbSNP
rs587759984 1538 dbSNP
rs1267712785 1540 dbSNP
rs1217042576 1542 dbSNP
rs1219088531 1543 dbSNP
rs898900414 1543 dbSNP
rs1371134277 1546 dbSNP
rs1025985026 1547 dbSNP
rs1432235184 1549 dbSNP
rs781916024 1552 dbSNP
rs781979372 1552 dbSNP
rs879855649 1552 dbSNP
rs782740008 1553 dbSNP
rs782134104 1554 dbSNP
rs782728762 1554 dbSNP
rs1320803919 1556 dbSNP
rs918763995 1556 dbSNP
rs1357152048 1557 dbSNP
rs868145014 1557 dbSNP
rs1175271227 1561 dbSNP
rs1396793195 1563 dbSNP
rs1433658082 1563 dbSNP
rs781819776 1563 dbSNP
rs866847102 1563 dbSNP
rs1195625319 1564 dbSNP
rs1205883920 1565 dbSNP
rs28487570 1565 dbSNP
rs1033975416 1566 dbSNP
rs1254592123 1566 dbSNP
rs1349296906 1567 dbSNP
rs781839523 1567 dbSNP
rs782445156 1567 dbSNP
rs782453917 1567 dbSNP
rs1283052111 1568 dbSNP
rs1295863036 1569 dbSNP
rs1363809679 1569 dbSNP
rs782820613 1569 dbSNP
rs1383488405 1570 dbSNP
rs79959773 1571 dbSNP
rs879117594 1571 dbSNP
rs989245488 1571 dbSNP
rs930151573 1572 dbSNP
rs1254310812 1573 dbSNP
rs867575915 1573 dbSNP
rs1181678180 1574 dbSNP
rs868328324 1575 dbSNP
rs1203553663 1577 dbSNP
rs75342652 1577 dbSNP
rs867002066 1581 dbSNP
rs587683827 1590 dbSNP
rs1319598836 1591 dbSNP
rs992970138 1592 dbSNP
rs1311571672 1593 dbSNP
rs1415232225 1594 dbSNP
rs968770162 1595 dbSNP
rs917037263 1599 dbSNP
rs1409095854 1600 dbSNP
rs1395891841 1601 dbSNP
rs1168618334 1604 dbSNP
rs948382466 1604 dbSNP
rs1463562431 1606 dbSNP
rs1044004641 1607 dbSNP
rs1009772478 1609 dbSNP
rs920261682 1617 dbSNP
rs1164325999 1624 dbSNP
rs1475746394 1626 dbSNP
rs140602006 1628 dbSNP
rs1180684559 1630 dbSNP
rs750996632 1632 dbSNP
rs1482984907 1638 dbSNP
rs1251836636 1641 dbSNP
rs587636308 1658 dbSNP
rs782462787 1659 dbSNP
rs150414217 1666 dbSNP
rs1008752457 1669 dbSNP
rs1041522363 1674 dbSNP
rs587753209 1678 dbSNP
rs587645233 1681 dbSNP
rs1227531659 1684 dbSNP
rs1336318288 1690 dbSNP
rs781917540 1694 dbSNP
rs1393272620 1695 dbSNP
rs587727854 1697 dbSNP
rs1325476980 1698 dbSNP
rs1037853894 1699 dbSNP
rs1028306547 1702 dbSNP
rs782536929 1710 dbSNP
rs898955968 1717 dbSNP
rs1469947244 1720 dbSNP
rs587625250 1721 dbSNP
rs1000844428 1726 dbSNP
rs1031947810 1728 dbSNP
rs1266009863 1732 dbSNP
rs993240929 1739 dbSNP
rs1469574891 1740 dbSNP
rs956402660 1742 dbSNP
rs756574135 1747 dbSNP
rs993046255 1755 dbSNP
rs781797738 1756 dbSNP
rs917422278 1760 dbSNP
rs1329446412 1763 dbSNP
rs1302699636 1764 dbSNP
rs1441697851 1787 dbSNP
rs1397006393 1791 dbSNP
rs1318774846 1799 dbSNP
rs587675227 1801 dbSNP
rs1386050346 1804 dbSNP
rs1160835764 1805 dbSNP
rs1464942616 1807 dbSNP
rs782454764 1811 dbSNP
rs112092403 1819 dbSNP
rs979839701 1825 dbSNP
rs920232119 1827 dbSNP
rs1187476644 1828 dbSNP
rs930352814 1842 dbSNP
rs71503202 1843 dbSNP
rs1048086231 1856 dbSNP
rs1010733045 1868 dbSNP
rs138121308 1869 dbSNP
rs1280913799 1874 dbSNP
rs944529319 1876 dbSNP
rs782615230 1878 dbSNP
rs1327412443 1879 dbSNP
rs587604153 1879 dbSNP
rs1320750407 1881 dbSNP
rs977478556 1886 dbSNP
rs900357096 1891 dbSNP
rs1174799558 1895 dbSNP
rs1436058020 1899 dbSNP
rs996907945 1919 dbSNP
rs1387713284 1923 dbSNP
rs1166994298 1924 dbSNP
rs1475508092 1926 dbSNP
rs1049871019 1931 dbSNP
rs1185187517 1932 dbSNP
rs187098485 1933 dbSNP
rs1258158759 1937 dbSNP
rs1212855800 1938 dbSNP
rs904506682 1941 dbSNP
rs910827849 1943 dbSNP
rs191685507 1944 dbSNP
rs943600974 1945 dbSNP
rs1446355550 1946 dbSNP
rs1355156697 1949 dbSNP
rs1314026448 1953 dbSNP
rs149166186 1954 dbSNP
rs587604258 1955 dbSNP
rs1410006873 1975 dbSNP
rs1014921865 1983 dbSNP
rs1024403593 1984 dbSNP
rs920769770 1988 dbSNP
rs929420668 1989 dbSNP
rs1418260434 1990 dbSNP
rs749596475 1998 dbSNP
rs45627341 1999 dbSNP
rs1204000762 2001 dbSNP
rs369375908 2001 dbSNP
rs1438453724 2002 dbSNP
rs1275396231 2009 dbSNP
rs951798143 2010 dbSNP
rs146501678 2011 dbSNP
rs907539098 2012 dbSNP
rs1235497178 2017 dbSNP
rs1349221394 2022 dbSNP
rs1055182167 2029 dbSNP
rs1442372369 2038 dbSNP
rs115934943 2039 dbSNP
rs1022126314 2044 dbSNP
rs902370706 2046 dbSNP
rs999286078 2047 dbSNP
rs1054379 2050 dbSNP
rs954938638 2050 dbSNP
rs921751887 2051 dbSNP
rs931828852 2053 dbSNP
rs1212079809 2058 dbSNP
rs1049838294 2061 dbSNP
rs1216014029 2061 dbSNP
rs904640220 2062 dbSNP
rs936093125 2063 dbSNP
rs1306925750 2071 dbSNP
rs1374915089 2071 dbSNP
rs1053085634 2076 dbSNP
rs587740698 2077 dbSNP
rs112767008 2078 dbSNP
rs587696631 2079 dbSNP
rs1014429813 2080 dbSNP
rs1371365425 2083 dbSNP
rs1024541027 2085 dbSNP
rs1327488787 2088 dbSNP
rs373192527 2090 dbSNP
rs1455458087 2095 dbSNP
rs377314373 2096 dbSNP
rs1159782518 2098 dbSNP
rs920824127 2099 dbSNP
rs45489391 2101 dbSNP
rs587650684 2108 dbSNP
rs951794170 2109 dbSNP
rs939088737 2110 dbSNP
rs772296587 2111 dbSNP
rs983626249 2113 dbSNP
rs1014565679 2114 dbSNP
rs966132760 2120 dbSNP
rs1216933311 2126 dbSNP
rs1319296054 2132 dbSNP
rs975980955 2138 dbSNP
rs921884737 2142 dbSNP
rs1233005440 2143 dbSNP
rs782106556 2144 dbSNP
rs56409531 2145 dbSNP
rs1380127769 2151 dbSNP
rs902424701 2151 dbSNP
rs999389706 2153 dbSNP
rs979226591 2171 dbSNP
rs372242658 2173 dbSNP
rs369985651 2175 dbSNP
rs1357421405 2176 dbSNP
rs1172918652 2177 dbSNP
rs1434194294 2181 dbSNP
rs1009405436 2194 dbSNP
rs936075718 2196 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000291722.7 | 3UTR | CGUGGGGUUUUCUGGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-6132 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT067294 NECAP1 NECAP endocytosis associated 1 2 10
MIRT100110 ABT1 activator of basal transcription 1 2 8
MIRT358583 CANX calnexin 2 2
MIRT445247 SEMA5A semaphorin 5A 2 2
MIRT445764 CCND3 cyclin D3 2 2
MIRT452388 LY6E lymphocyte antigen 6 family member E 2 4
MIRT452829 FAM131B family with sequence similarity 131 member B 2 2
MIRT453450 GLG1 golgi glycoprotein 1 2 2
MIRT455435 ID3 inhibitor of DNA binding 3, HLH protein 2 2
MIRT460629 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT461607 DPH2 DPH2 homolog 2 2
MIRT461989 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT464258 VCL vinculin 2 2
MIRT465713 TNFAIP1 TNF alpha induced protein 1 2 2
MIRT466475 TECPR2 tectonin beta-propeller repeat containing 2 2 7
MIRT467119 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 4
MIRT468299 SFT2D2 SFT2 domain containing 2 2 2
MIRT469696 RAB5B RAB5B, member RAS oncogene family 2 8
MIRT469904 PTRF caveolae associated protein 1 2 2
MIRT470015 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT471385 PDPR pyruvate dehydrogenase phosphatase regulatory subunit 2 2
MIRT471409 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT471719 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT473608 MARK2 microtubule affinity regulating kinase 2 2 2
MIRT476328 GLTSCR1L BRD4 interacting chromatin remodeling complex associated protein like 2 2
MIRT479448 CDK6 cyclin dependent kinase 6 2 2
MIRT482032 AMER1 APC membrane recruitment protein 1 2 2
MIRT482360 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT484661 HOXD3 homeobox D3 2 4
MIRT486828 NDOR1 NADPH dependent diflavin oxidoreductase 1 2 2
MIRT487069 CLASP1 cytoplasmic linker associated protein 1 2 4
MIRT487196 NFASC neurofascin 2 4
MIRT487448 TFAP2B transcription factor AP-2 beta 2 4
MIRT487517 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT487640 BRSK2 BR serine/threonine kinase 2 2 4
MIRT487755 SKI SKI proto-oncogene 2 4
MIRT489944 CPLX1 complexin 1 2 2
MIRT491101 MSI1 musashi RNA binding protein 1 2 4
MIRT491181 LAMA5 laminin subunit alpha 5 2 2
MIRT492355 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493918 FAM127B retrotransposon Gag like 8A 2 4
MIRT493932 FAM127A retrotransposon Gag like 8C 2 4
MIRT494679 ARID3A AT-rich interaction domain 3A 2 2
MIRT494814 AKAP11 A-kinase anchoring protein 11 2 2
MIRT494835 ADCY9 adenylate cyclase 9 2 2
MIRT495455 PNMAL2 paraneoplastic Ma antigen family member 8B 2 2
MIRT496962 MAP1LC3B microtubule associated protein 1 light chain 3 beta 2 2
MIRT526228 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT531028 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT557110 HOXA3 homeobox A3 2 2
MIRT560514 POGK pogo transposable element derived with KRAB domain 2 2
MIRT567753 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT569608 TRIM29 tripartite motif containing 29 2 2
MIRT570242 CPNE5 copine 5 2 2
MIRT572327 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT572373 ATOX1 antioxidant 1 copper chaperone 2 2
MIRT575024 Tecpr2 tectonin beta-propeller repeat containing 2 2 5
MIRT576146 Hmox1 heme oxygenase 1 2 2
MIRT612443 SMOC2 SPARC related modular calcium binding 2 2 2
MIRT615404 VDAC2 voltage dependent anion channel 2 2 2
MIRT629114 CYCS cytochrome c, somatic 2 2
MIRT631362 FOXI2 forkhead box I2 2 2
MIRT639322 THBD thrombomodulin 2 2
MIRT643797 ABCC12 ATP binding cassette subfamily C member 12 2 2
MIRT669687 ABLIM1 actin binding LIM protein 1 2 2
MIRT670595 LLGL1 LLGL1, scribble cell polarity complex component 2 4
MIRT691190 NIF3L1 NGG1 interacting factor 3 like 1 2 2
MIRT691688 FLOT2 flotillin 2 2 2
MIRT697127 OTUD5 OTU deubiquitinase 5 2 2
MIRT700814 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT701248 NUP35 nucleoporin 35 2 2
MIRT702362 KLHL15 kelch like family member 15 2 2
MIRT703325 GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 2 2
MIRT706060 PKD1 polycystin 1, transient receptor potential channel interacting 2 2
MIRT710475 CDH5 cadherin 5 2 2
MIRT713018 SLC4A2 solute carrier family 4 member 2 2 2
MIRT716427 RAB15 RAB15, member RAS oncogene family 2 2
MIRT718093 ABHD12 abhydrolase domain containing 12 2 2
MIRT718542 PIGQ phosphatidylinositol glycan anchor biosynthesis class Q 2 2
MIRT719122 CACFD1 calcium channel flower domain containing 1 2 2
MIRT721393 LDLRAD4 low density lipoprotein receptor class A domain containing 4 2 2
MIRT736283 CDC42 cell division cycle 42 2 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6132 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-6132 Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-6132 Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-6132 Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-6132 Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-6132 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-6132 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-6132 Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-6132 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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