pre-miRNA Information
pre-miRNA hsa-mir-6511b-1   
Genomic Coordinates chr16: 2106669 - 2106753
Description Homo sapiens miR-6511b-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-6511b-2   
Genomic Coordinates chr16: 15134075 - 15134145
Description Homo sapiens miR-6511b-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6511b-3p
Sequence 53| CCUCACCACCCCUUCUGCCUGCA |75
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
993639 5 ClinVar
1196654 15 ClinVar
256998 15 ClinVar
433980 16 ClinVar
586295 18 ClinVar
433979 19 ClinVar
COSM3948368 17 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs769351879 1 dbSNP
rs1001283562 2 dbSNP
rs763611191 3 dbSNP
rs1465530682 4 dbSNP
rs1227492873 4 dbSNP
rs745502224 5 dbSNP
rs551972801 6 dbSNP
rs538162642 6 dbSNP
rs751438298 7 dbSNP
rs1285683081 7 dbSNP
rs1340898267 8 dbSNP
rs4018164 9 dbSNP
rs370568831 9 dbSNP
rs1180919709 10 dbSNP
rs1339482497 10 dbSNP
rs758216756 11 dbSNP
rs1323026290 11 dbSNP
rs1239445091 12 dbSNP
rs1310601001 12 dbSNP
rs1431093969 13 dbSNP
rs752690118 15 dbSNP
rs1371790714 15 dbSNP
rs746463189 16 dbSNP
rs1209415208 17 dbSNP
rs761022804 17 dbSNP
rs1242038386 17 dbSNP
rs370411414 18 dbSNP
rs759723934 19 dbSNP
rs1428318191 19 dbSNP
rs1416441031 20 dbSNP
rs754040914 21 dbSNP
rs776062795 21 dbSNP
rs1273686335 22 dbSNP
rs1182772456 22 dbSNP
rs1472619959 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CASP10   
Synonyms ALPS2, FLICE2, MCH4
Description caspase 10
Transcript NM_001230   
Other Transcripts NM_032974 , NM_032977   
Expression
Putative miRNA Targets on CASP10
3'UTR of CASP10
(miRNA target sites are highlighted)
>CASP10|NM_001230|3'UTR
   1 CAGAGAGTTTTTGTTGGTTCTTAGACCTCAAACGAATCATTGGCTATAACCTCCAGCCTCCTGCCCAGCACAGGAATCGG
  81 TGGTCTCCACCTGTCATTCTAGAAACAGGAAACACCGTGTTTTCTGACACAGTCAATTCTGATTTTCTTTTTCTTTTGCA
 161 AGTCTAAATGTTAGAAAACTTTCTTTTTTTTGGAGATAGTCTCATTCTGTCACCCAGACTGGAGTGCAGGGGGGCAATCA
 241 CGGCTCACTGTAGTCTCGACCTCCCAGGCTCAAGCTGTCCTCCCGCCTCAGCTTCCCAAGTAGCTGGGACCACAGGTGTG
 321 TACCACCGTGCCCGGATTTTTTTTATTCTTTATTTTTTGTAGAGATGGAGGGATCTCACTTTGTTGCACAGGCTGGTTTC
 401 AAACTCCTAGGCCCAAGTGATCCTCCCACCTCTGTCCCCAAAATACTGGGATTATAGGCACGAGCCACCACACCTGGCCA
 481 GAAAACTTTCATTATTGAAGACTTGGATTGTAGCCTTGGTTTTGGATGTCTATTCTGAAGACAGAGTAATTGGCTTTGGT
 561 TTGTGCAGGTACTTTTTCTTTGAGACAGAGTCACTCCGTCACCTGGGCTGGAGTGCAGTGGTGGGATCACTGTTCACTGC
 641 AGCCTTGACCTCCCAGGTTCAAGCGATCCTCCCACCTCAGCCTCCCAAGTAGCTGAGACTACAGGTGTGTGTCCATGCAC
 721 AGCTAACTTTTTATTTTTTTTGTGGAGATGGGGTTTCACTATGTTGCCTAAGCTGGTCTCAAACTCCTGGGCTCAAGCGA
 801 TCCTCCCACCTCAGCTTCTCAAAGTTCTGGGACTACAGGCATGAAATACTGTGCCTGGCCTGGGGACCAGGTGCATTTTA
 881 AGGTTCCTTGGTGTTCAAAAACCACGTTCTTAGCCTAGATTGAGCTTAGATTGCCTCTCTAGACAACTACCCCTTAGTTA
 961 TAATTCTGTGTCCCCTCTGCATGCCCTTAAACATTGGACAGTGAGGTCACAGTCCACCCACCCTCTCTCTGATCTCCCCC
1041 TTCCTAAGACTTCTCTTTTGCACATCTAGTGAGGTGAAAATTTGGTCTATGCCAGGCCCATTTCCTGCTTTTGTGTAAGG
1121 AAGGTGCTCACATAGGAAGTTTTTATTTGGTTAGAGACAGGTTTCCCTGTAGGAAGATGATGGCTCATTTACACTCAGCT
1201 GCTCTGCAAGCAGAAACTTTACAACCTGATGTCATATTCCATTTTGGACTGGGTGCGGTGACTCATGCCTGTAATCCCAG
1281 TACTCTGGGAAGCCAAGGCAGGCAGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAATACGGCAAAACCTCATC
1361 ATTACTAAAAACACAAAAATTAGCCAGGTGTGGCGGCGAGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGACAGGAGA
1441 ATCTCTTGAATCCAGGAGGCAGAGGCTGTGGTGAGCCAAGATGACACAACTGCACTCCAGCTTGGGCAACAGGGCGAGAC
1521 CTTGTTTAAAAAAAAAATTCAATATTGGGGTTGGAACATTTCAGTTGCCATTGACAGAACACCCAATTCAAATTGACTGA
1601 AGCAAAGAAGGGAATTTATTGCCTCTTTCACATTGAAACCCAGGAGTGGATAACACTGGCTTCAGGCAAAGCTTGAATCA
1681 GGACTCAATCTACAGGCCAGCACCTTTCTCTTGGCCGGATGTCCTCAGGGCTGGCAGATGCAGTAGACTGCAGTGGACAG
1761 TCCCCACCTTGTTACTGCTACTACACTTTGCTCCTCTGGCCCAAGGCATGAGGAGAGAGGCTGTGTCAGAAACTGAAGCT
1841 GTTCTCAGGATCACTGGGCTCTTCTTGGCAGAGGGGATGTCTGGCTTGCCTGAAGGGAGTGGCTCTGTAAGGACGCCTTG
1921 ATGCTTTCTTCATTAAGATTTTGAGCATTTTTACGTACTTGAGCTTTTTTTTTTTTTTTTTTCAATTTCTAGAGGAACTT
2001 TTTCTCTGTTAATTCCTGGAACTGTATTTTGAATCCTTAAAGGTGAGCCCTCATAGGGAGATCCAAAGTCCTGTGGTTAA
2081 CGCCTTCATTTATAGATGAGGCAGCTGAGGCCTGGGGATGTGAACAACCTGCTCACAGTCCTCATTTACTGGATTTGACT
2161 TCAGCCAGGTGAACTGGAATGCCTTGGGGCGTGGAAGGGCATTAGGAGTGTTTCATTTGATATGTGAATGCTCATAAAAA
2241 AATGTCAAGGAATGAAGAACAACAACTCTCAGTGGTGCCTGCATTTATAATTATTTATGTGAAAGTCAAATTCATGTACA
2321 GTAAATTTGTTATAAGAATATTCACAAGAACACTGTTCTGATATCTCTGATTGTCATGTGGATTTGAATGTAGCTTGACA
2401 GAGGGAATGTCTAATCTATATTGACAGGGCAGGAACACCGTCATCTTAGACAAACACCGCCACTTTAAGTTCCAGTTCCC
2481 TTTCTAGCCTCATGCATTTCAAGGAAATCACTTCTTTTCTAACAGCGAGCAGCCAGAAAGAGAAGAGAGTAAAATACAGA
2561 TAAGACAGCTCTGGCATAGAGGGAGGTGGGGGGGTGGGGGAAGTCTCTTGGGTAACTGCCAAACTTTGCCTTCATACAAT
2641 GGGTTCCAGGAAAACAATGAGCCTTAATAAGCACATTCCTTTCCCTTCAGGTGCACTAAGTGGGGAAGCTAAAAGCAGAC
2721 TGGAGGGGGGTGGGGTGTACCTACAGCTGCAGAAATATTGTATGGGAACGGACACACAACTCTCCCTCCCAGATAAGCAC
2801 AGCAAAGAGACATAGAAGCAATCCAAGCCTCTGATAAACTCTCCCACCCTAAATCCTTAAAAACTCTTAGTCTGTAAGTG
2881 AGTGGGCTCTGACCTAACTCGGCCAGAAGCCCCTTTCAAATTTGTTTTCTCTAAAATAAACCTGTCCTTGGCTGTCAAGC
2961 CACCTTTCATGTTTCTTTCCTCTTTCTTTAATTCTTACACATGTGTCAGGATGATCTCCCAAAACCGTGTTCATAACAGT
3041 CAGGGCCAAAAGCTAGTGGTCACAGTCCTTGTCCAGTTGGCAGAACTGACATGTGAAGGCAAGTGAAGGATGGTGAGATA
3121 CTGAGGAAAGAGCAAAGGATCTGGAGATCAAAGCCCTGCATTTCCATTTTGTCCTGATTCCTTTGCTCAGAGACACTAAC
3201 TAAATCAAGCTAGCTTTTTTCAGCCTTGTCTGTAAAGTAGAGAAAACATTAGCTGTTGGGAAGACGAAAAAGAATGTGTC
3281 CTATGTGTGCATCTATTTAAATCTAACTGTGCTGAGGTGCATATAAATGCCTTTAGGTGGTAGGGTCTTCCGGTTGTAAC
3361 TGCAACAGAAATAGCAGGACTTAAGTTCCTTTGTGCGTAATTCCAGCTGACTTTATTAGCGGCAACTCAGCACTAGCATT
3441 ACCCCTGACATACTCTGAGTAAGATCTAATTCTTCCCTCACTGGTTCGTGATGTCTACCGCAGCAGAAGGCCAGCTCTTG
3521 ACTCTGAGTTCAGTTGGACAAAATGCTGTTGATAAAACCTCCTGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCC
3601 TTGTGACCTGCACATATATATCCAGATGGCCTGAAGTAACTGAAGAATCACAAAAGAAGTGAAAATGGCCTGTTCCTGCC
3681 TTAACTGATGACATTACCTTGTGAAATTCCTTCTCCTGGCTCATCCTGGCTCAAAAGCTCCCCCAGTGAGCACCTTGTGA
3761 CCCCCATCCCTGCCAGCCAGAGAACAACCCCCTTTGACTGTAATTTTCCACTACTTACCCAAATCCTATAAAACGGCCCC
3841 ACCCCTATCTCCCTTCACTGACTTTCTTTTCGGACTCAGCCCACCTGCACCCAGGTGATTAAAAAGCTTTATTGCTCAC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acgUCCGUCUUCCCCACCACUCc 5'
             |||||||:|  |||||||| 
Target 5' aggAGGCAGAGGCTGTGGTGAGc 3'
1454 - 1476 180.00 -30.80
2
miRNA  3' acgUCCGU---CUUCCCCACCACUCc 5'
             |||||   ||| || ||||||| 
Target 5' tgaAGGCAAGTGAA-GGATGGTGAGa 3'
3094 - 3118 167.00 -22.30
3
miRNA  3' acGUCCGUCUUCCC--CACCACUCc 5'
            ::||| |:|| |  ||||||:| 
Target 5' ccTGGGCTGGAGTGCAGTGGTGGGa 3'
602 - 626 151.00 -21.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
333443 78 ClinVar
896888 117 ClinVar
333444 137 ClinVar
333445 231 ClinVar
333446 278 ClinVar
333447 286 ClinVar
333448 334 ClinVar
896889 368 ClinVar
333449 481 ClinVar
897393 608 ClinVar
897394 633 ClinVar
333450 658 ClinVar
333451 666 ClinVar
333452 733 ClinVar
333453 734 ClinVar
897395 734 ClinVar
333454 740 ClinVar
898548 741 ClinVar
333455 816 ClinVar
898549 847 ClinVar
333456 906 ClinVar
898550 912 ClinVar
898551 1023 ClinVar
333457 1039 ClinVar
333458 1044 ClinVar
333459 1126 ClinVar
333460 1258 ClinVar
895563 1259 ClinVar
895564 1328 ClinVar
333461 1367 ClinVar
895565 1396 ClinVar
333462 1472 ClinVar
333463 1521 ClinVar
333464 1539 ClinVar
896965 1543 ClinVar
333465 1594 ClinVar
896966 1625 ClinVar
896967 1655 ClinVar
333466 1689 ClinVar
333467 1794 ClinVar
333468 1910 ClinVar
897450 1915 ClinVar
333469 1921 ClinVar
897451 1955 ClinVar
333470 1956 ClinVar
333471 1965 ClinVar
333472 2176 ClinVar
333473 2290 ClinVar
333474 2296 ClinVar
897452 2382 ClinVar
333475 2426 ClinVar
333476 2588 ClinVar
333477 2591 ClinVar
333478 2601 ClinVar
333479 2619 ClinVar
333480 2690 ClinVar
898613 2742 ClinVar
333481 2758 ClinVar
333482 2832 ClinVar
333483 2845 ClinVar
333484 2870 ClinVar
333485 2925 ClinVar
333486 2980 ClinVar
333487 2987 ClinVar
333488 3020 ClinVar
333489 3072 ClinVar
333490 3138 ClinVar
333491 3366 ClinVar
333492 3421 ClinVar
895626 3438 ClinVar
333493 3474 ClinVar
333494 3479 ClinVar
897036 3489 ClinVar
897037 3511 ClinVar
333495 3514 ClinVar
897038 3592 ClinVar
897039 3614 ClinVar
333496 3836 ClinVar
897518 3846 ClinVar
COSN31521159 7 COSMIC
COSN31603861 13 COSMIC
COSN21552803 21 COSMIC
COSN31563899 33 COSMIC
COSN30507541 34 COSMIC
COSN13962738 35 COSMIC
COSN30490508 43 COSMIC
COSN30537804 58 COSMIC
COSN30148019 61 COSMIC
COSN30144984 69 COSMIC
COSN30483031 75 COSMIC
COSN30120598 76 COSMIC
COSN26969231 79 COSMIC
COSN31503898 86 COSMIC
COSN28878550 88 COSMIC
COSN30495563 97 COSMIC
COSN30104313 100 COSMIC
COSN30480586 103 COSMIC
COSN30103908 109 COSMIC
COSN30107170 125 COSMIC
COSN31558237 154 COSMIC
COSN30578357 167 COSMIC
COSN28880080 192 COSMIC
COSN31578654 192 COSMIC
COSN30115331 204 COSMIC
COSN18003778 229 COSMIC
COSN17182197 599 COSMIC
COSN9304062 866 COSMIC
COSN22454223 899 COSMIC
COSN24496504 934 COSMIC
COSN6932551 1288 COSMIC
COSN29850227 1772 COSMIC
COSN25800467 1808 COSMIC
COSN17677844 1927 COSMIC
COSN20097686 1983 COSMIC
COSN27320666 1983 COSMIC
COSN5494587 2187 COSMIC
COSN18942896 3150 COSMIC
COSN20090704 3614 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1489230567 1 dbSNP
rs750928913 2 dbSNP
rs758062780 3 dbSNP
rs1045537585 4 dbSNP
rs759021918 5 dbSNP
rs746419605 7 dbSNP
rs777571966 8 dbSNP
rs375389117 13 dbSNP
rs756812067 14 dbSNP
rs780608906 17 dbSNP
rs1217513876 25 dbSNP
rs745815199 26 dbSNP
rs557972760 34 dbSNP
rs377581981 35 dbSNP
rs372456822 40 dbSNP
rs199884991 41 dbSNP
rs749091061 44 dbSNP
rs1449763416 46 dbSNP
rs1415606148 47 dbSNP
rs768830139 51 dbSNP
rs1011788084 54 dbSNP
rs1418013171 64 dbSNP
rs1441626195 71 dbSNP
rs191438878 78 dbSNP
rs1479768946 79 dbSNP
rs543951171 80 dbSNP
rs1210558918 86 dbSNP
rs1168137578 89 dbSNP
rs1347139292 91 dbSNP
rs780624364 94 dbSNP
rs182870266 101 dbSNP
rs1353823363 113 dbSNP
rs912143180 117 dbSNP
rs1389356859 118 dbSNP
rs1380879918 125 dbSNP
rs529561375 129 dbSNP
rs747374452 137 dbSNP
rs1449230931 143 dbSNP
rs1376874592 151 dbSNP
rs1375148723 156 dbSNP
rs541093030 162 dbSNP
rs559764746 163 dbSNP
rs533505885 173 dbSNP
rs1019632367 178 dbSNP
rs547391777 184 dbSNP
rs1158437565 194 dbSNP
rs1417626232 196 dbSNP
rs1416601750 228 dbSNP
rs961494978 230 dbSNP
rs565567149 231 dbSNP
rs1218203664 232 dbSNP
rs919941235 235 dbSNP
rs1271172644 239 dbSNP
rs370987136 242 dbSNP
rs952053336 243 dbSNP
rs984738742 251 dbSNP
rs915733803 258 dbSNP
rs570116133 259 dbSNP
rs1322937891 262 dbSNP
rs769002360 263 dbSNP
rs948560120 266 dbSNP
rs1232257269 274 dbSNP
rs1205667481 277 dbSNP
rs3931696 278 dbSNP
rs928345360 283 dbSNP
rs1402442012 284 dbSNP
rs1484964774 285 dbSNP
rs3851974 286 dbSNP
rs1003208096 291 dbSNP
rs1165793087 292 dbSNP
rs1477224326 294 dbSNP
rs568287435 296 dbSNP
rs1009868356 297 dbSNP
rs1478138070 306 dbSNP
rs1421218025 308 dbSNP
rs1022228173 310 dbSNP
rs1410245759 312 dbSNP
rs1489192152 325 dbSNP
rs892843463 326 dbSNP
rs1265463592 327 dbSNP
rs772674650 328 dbSNP
rs762924575 329 dbSNP
rs886055407 334 dbSNP
rs1220837378 335 dbSNP
rs1327336674 342 dbSNP
rs1295510777 345 dbSNP
rs1436468175 349 dbSNP
rs535718566 354 dbSNP
rs1313438863 362 dbSNP
rs1326622097 367 dbSNP
rs41365346 368 dbSNP
rs1392533378 389 dbSNP
rs1173017829 392 dbSNP
rs1465949886 394 dbSNP
rs1029025340 397 dbSNP
rs1008319663 401 dbSNP
rs1268569907 403 dbSNP
rs565329680 408 dbSNP
rs1364334427 411 dbSNP
rs1215431329 412 dbSNP
rs766286100 415 dbSNP
rs1278324374 416 dbSNP
rs1466906024 426 dbSNP
rs1259607581 433 dbSNP
rs1198815890 436 dbSNP
rs1340540877 438 dbSNP
rs897191605 440 dbSNP
rs994301707 442 dbSNP
rs1027391067 448 dbSNP
rs1304326656 452 dbSNP
rs1440275336 460 dbSNP
rs1368791552 461 dbSNP
rs774194383 462 dbSNP
rs1410698125 463 dbSNP
rs952770481 474 dbSNP
rs1395568271 478 dbSNP
rs539196058 481 dbSNP
rs1022865380 482 dbSNP
rs569407232 491 dbSNP
rs981238256 494 dbSNP
rs767284867 495 dbSNP
rs928493352 496 dbSNP
rs1452040387 530 dbSNP
rs934405552 536 dbSNP
rs1436843643 545 dbSNP
rs1250331924 547 dbSNP
rs557437023 555 dbSNP
rs1194418627 564 dbSNP
rs1243400741 570 dbSNP
rs1475522863 572 dbSNP
rs576049653 579 dbSNP
rs914210789 588 dbSNP
rs1455437918 595 dbSNP
rs930793337 597 dbSNP
rs543675659 598 dbSNP
rs947028574 599 dbSNP
rs1049396759 602 dbSNP
rs1326674355 608 dbSNP
rs1397579011 618 dbSNP
rs890001143 619 dbSNP
rs939050160 634 dbSNP
rs1432736589 639 dbSNP
rs1381682787 646 dbSNP
rs1056228926 652 dbSNP
rs944293630 653 dbSNP
rs555904995 655 dbSNP
rs886055408 658 dbSNP
rs1041606604 659 dbSNP
rs1009256618 664 dbSNP
rs574283323 665 dbSNP
rs142072849 666 dbSNP
rs994645682 669 dbSNP
rs1316285523 671 dbSNP
rs754027514 677 dbSNP
rs1484958894 709 dbSNP
rs1224395669 710 dbSNP
rs996632293 710 dbSNP
rs1349976591 711 dbSNP
rs1027093451 717 dbSNP
rs1028073042 729 dbSNP
rs886055409 733 dbSNP
rs1008914612 734 dbSNP
rs1019052979 734 dbSNP
rs41506545 734 dbSNP
rs886055410 734 dbSNP
rs559831804 740 dbSNP
rs1399617687 742 dbSNP
rs920844950 748 dbSNP
rs186862746 754 dbSNP
rs1475317069 762 dbSNP
rs1419082623 763 dbSNP
rs1304716699 764 dbSNP
rs1187673920 771 dbSNP
rs1474546634 776 dbSNP
rs1244349892 777 dbSNP
rs1353595847 779 dbSNP
rs1446533993 781 dbSNP
rs754203235 789 dbSNP
rs1282187505 799 dbSNP
rs981030239 801 dbSNP
rs1335694394 807 dbSNP
rs17860409 816 dbSNP
rs969926252 835 dbSNP
rs1447106232 838 dbSNP
rs1231236057 840 dbSNP
rs41529249 847 dbSNP
rs531007363 848 dbSNP
rs939516462 851 dbSNP
rs1429877814 856 dbSNP
rs1056595967 866 dbSNP
rs1324918952 872 dbSNP
rs913678149 875 dbSNP
rs1469594573 883 dbSNP
rs1035926992 888 dbSNP
rs1393262833 905 dbSNP
rs886055411 906 dbSNP
rs1187641048 907 dbSNP
rs903530916 911 dbSNP
rs115679933 916 dbSNP
rs1195579775 920 dbSNP
rs779462286 921 dbSNP
rs1272784184 922 dbSNP
rs1379508197 926 dbSNP
rs568231723 927 dbSNP
rs968445335 942 dbSNP
rs1257446347 947 dbSNP
rs1019439155 951 dbSNP
rs985050460 975 dbSNP
rs1359776623 977 dbSNP
rs1276166946 995 dbSNP
rs1441023048 997 dbSNP
rs879147002 999 dbSNP
rs1160260226 1008 dbSNP
rs573611594 1009 dbSNP
rs866603698 1020 dbSNP
rs1356697354 1021 dbSNP
rs540942211 1022 dbSNP
rs1323062174 1023 dbSNP
rs944285473 1027 dbSNP
rs886055412 1039 dbSNP
rs553212718 1044 dbSNP
rs918731788 1050 dbSNP
rs1454786380 1051 dbSNP
rs1252396894 1056 dbSNP
rs1192039075 1064 dbSNP
rs1376685829 1067 dbSNP
rs1481722213 1074 dbSNP
rs1233308777 1075 dbSNP
rs772506757 1083 dbSNP
rs547289297 1088 dbSNP
rs1203540929 1089 dbSNP
rs1237470832 1095 dbSNP
rs1282390788 1102 dbSNP
rs1234883534 1116 dbSNP
rs1346556297 1117 dbSNP
rs565594606 1121 dbSNP
rs1300601864 1122 dbSNP
rs886055413 1126 dbSNP
rs1281806200 1127 dbSNP
rs1373606084 1133 dbSNP
rs759040658 1135 dbSNP
rs374014099 1138 dbSNP
rs528254841 1140 dbSNP
rs1350695155 1155 dbSNP
rs1441933005 1158 dbSNP
rs1353076398 1168 dbSNP
rs185024061 1170 dbSNP
rs1435857782 1171 dbSNP
rs187888242 1179 dbSNP
rs1270799432 1187 dbSNP
rs1469523288 1194 dbSNP
rs1049053824 1201 dbSNP
rs777848389 1225 dbSNP
rs1012341520 1227 dbSNP
rs1421166449 1230 dbSNP
rs1409003925 1239 dbSNP
rs960849939 1240 dbSNP
rs1479554592 1247 dbSNP
rs569677351 1250 dbSNP
rs913638417 1254 dbSNP
rs945105513 1257 dbSNP
rs886055414 1258 dbSNP
rs1043873502 1265 dbSNP
rs1316931787 1267 dbSNP
rs780712346 1269 dbSNP
rs906569012 1272 dbSNP
rs932343702 1281 dbSNP
rs1295465868 1283 dbSNP
rs1003190938 1289 dbSNP
rs1416008268 1291 dbSNP
rs1035638171 1310 dbSNP
rs77842514 1311 dbSNP
rs1311532373 1313 dbSNP
rs956161659 1327 dbSNP
rs572384566 1330 dbSNP
rs41342848 1331 dbSNP
rs1010036204 1334 dbSNP
rs1049619352 1335 dbSNP
rs752057868 1337 dbSNP
rs891076756 1340 dbSNP
rs367793804 1341 dbSNP
rs1188391004 1345 dbSNP
rs866865576 1347 dbSNP
rs1415841130 1355 dbSNP
rs537131893 1356 dbSNP
rs1206777275 1360 dbSNP
rs985209870 1361 dbSNP
rs886055415 1367 dbSNP
rs910874241 1375 dbSNP
rs1336485284 1384 dbSNP
rs1036830011 1387 dbSNP
rs1396169538 1389 dbSNP
rs562831383 1395 dbSNP
rs747068686 1396 dbSNP
rs755324609 1398 dbSNP
rs1384372165 1399 dbSNP
rs781583519 1409 dbSNP
rs1336866749 1414 dbSNP
rs1448017413 1415 dbSNP
rs1455909603 1422 dbSNP
rs771095845 1423 dbSNP
rs747798556 1438 dbSNP
rs372084524 1443 dbSNP
rs1336346282 1444 dbSNP
rs993569376 1446 dbSNP
rs1260511649 1450 dbSNP
rs1184243882 1458 dbSNP
rs910090639 1461 dbSNP
rs1253243155 1464 dbSNP
rs1212637834 1465 dbSNP
rs948113283 1466 dbSNP
rs192319559 1472 dbSNP
rs906516489 1476 dbSNP
rs1337123564 1491 dbSNP
rs1197327409 1493 dbSNP
rs1273515538 1496 dbSNP
rs1003515279 1499 dbSNP
rs1433012194 1507 dbSNP
rs1052871289 1511 dbSNP
rs762716655 1513 dbSNP
rs891668492 1514 dbSNP
rs1010607402 1516 dbSNP
rs1388355512 1519 dbSNP
rs41331447 1521 dbSNP
rs1168150789 1528 dbSNP
rs1372443482 1528 dbSNP
rs578241007 1537 dbSNP
rs78596960 1538 dbSNP
rs886055416 1539 dbSNP
rs41484449 1543 dbSNP
rs1466836727 1550 dbSNP
rs1265794846 1565 dbSNP
rs1197913600 1568 dbSNP
rs545441814 1569 dbSNP
rs774284226 1577 dbSNP
rs967293073 1581 dbSNP
rs979188048 1583 dbSNP
rs1226792766 1585 dbSNP
rs1350203311 1587 dbSNP
rs564618271 1594 dbSNP
rs1233920564 1599 dbSNP
rs932312616 1607 dbSNP
rs985130709 1616 dbSNP
rs1391774550 1617 dbSNP
rs1397721649 1624 dbSNP
rs150841386 1625 dbSNP
rs965515471 1634 dbSNP
rs1436470786 1635 dbSNP
rs1395209350 1639 dbSNP
rs976412420 1647 dbSNP
rs775335156 1650 dbSNP
rs1476874374 1651 dbSNP
rs951660640 1655 dbSNP
rs1037371548 1664 dbSNP
rs896965507 1665 dbSNP
rs1420071073 1673 dbSNP
rs1049159505 1689 dbSNP
rs41515650 1689 dbSNP
rs1414869863 1697 dbSNP
rs887894351 1698 dbSNP
rs1277091317 1701 dbSNP
rs910041306 1712 dbSNP
rs948227015 1717 dbSNP
rs149971137 1718 dbSNP
rs1229211438 1725 dbSNP
rs145632258 1743 dbSNP
rs1239981261 1748 dbSNP
rs1334990306 1752 dbSNP
rs1286201911 1776 dbSNP
rs939433696 1791 dbSNP
rs1375986357 1792 dbSNP
rs114760847 1794 dbSNP
rs1412270805 1797 dbSNP
rs892493954 1817 dbSNP
rs1386425052 1819 dbSNP
rs199729683 1825 dbSNP
rs1158814709 1826 dbSNP
rs373636173 1829 dbSNP
rs896485820 1832 dbSNP
rs1180468900 1834 dbSNP
rs1042978095 1839 dbSNP
rs544040210 1855 dbSNP
rs1006648938 1857 dbSNP
rs547151138 1862 dbSNP
rs1187397410 1880 dbSNP
rs1440801578 1882 dbSNP
rs1286392039 1895 dbSNP
rs559240772 1904 dbSNP
rs1486656936 1908 dbSNP
rs886055417 1910 dbSNP
rs185318287 1915 dbSNP
rs1021649490 1916 dbSNP
rs1018072875 1918 dbSNP
rs11885191 1921 dbSNP
rs979605217 1922 dbSNP
rs767513426 1936 dbSNP
rs772973444 1939 dbSNP
rs569620920 1944 dbSNP
rs1318393928 1948 dbSNP
rs998383242 1955 dbSNP
rs139807893 1956 dbSNP
rs549065681 1960 dbSNP
rs368898723 1962 dbSNP
rs567209427 1963 dbSNP
rs111572089 1965 dbSNP
rs1463367700 1965 dbSNP
rs546372536 1965 dbSNP
rs878898185 1965 dbSNP
rs886055418 1965 dbSNP
rs79528144 1967 dbSNP
rs1193985800 1979 dbSNP
rs1215731801 1983 dbSNP
rs1246435743 1983 dbSNP
rs535246667 1983 dbSNP
rs1172242962 1984 dbSNP
rs1377791529 1985 dbSNP
rs1435946624 1986 dbSNP
rs937490024 1990 dbSNP
rs1382186629 1992 dbSNP
rs1383521953 1999 dbSNP
rs1295883320 2005 dbSNP
rs1270632405 2009 dbSNP
rs1429433059 2010 dbSNP
rs1362339050 2012 dbSNP
rs1327539309 2014 dbSNP
rs1441145344 2032 dbSNP
rs951152686 2043 dbSNP
rs750607862 2056 dbSNP
rs1404163461 2063 dbSNP
rs1017176150 2071 dbSNP
rs1231817381 2075 dbSNP
rs1334099540 2082 dbSNP
rs912202535 2083 dbSNP
rs1348490509 2088 dbSNP
rs1388355299 2103 dbSNP
rs1239398957 2131 dbSNP
rs1195772384 2140 dbSNP
rs147622791 2147 dbSNP
rs969635056 2155 dbSNP
rs578257204 2158 dbSNP
rs528903184 2176 dbSNP
rs886055419 2176 dbSNP
rs1484947008 2181 dbSNP
rs41443046 2182 dbSNP
rs1262701300 2186 dbSNP
rs918526263 2191 dbSNP
rs557116741 2192 dbSNP
rs939442171 2210 dbSNP
rs988659453 2218 dbSNP
rs1339504443 2220 dbSNP
rs1304963446 2221 dbSNP
rs1048295684 2222 dbSNP
rs1369781821 2223 dbSNP
rs905697630 2229 dbSNP
rs1434775271 2231 dbSNP
rs1192128429 2236 dbSNP
rs1356589619 2236 dbSNP
rs1330180006 2247 dbSNP
rs1429636905 2254 dbSNP
rs1368841421 2258 dbSNP
rs1175598852 2261 dbSNP
rs766522807 2263 dbSNP
rs1055227067 2268 dbSNP
rs1189646501 2269 dbSNP
rs1471058072 2273 dbSNP
rs946694713 2279 dbSNP
rs749986569 2280 dbSNP
rs1043719761 2283 dbSNP
rs41369551 2290 dbSNP
rs1159052814 2291 dbSNP
rs886055420 2296 dbSNP
rs1210981144 2302 dbSNP
rs1311042383 2306 dbSNP
rs1298766824 2308 dbSNP
rs1042638107 2314 dbSNP
rs1376029395 2315 dbSNP
rs1280478155 2333 dbSNP
rs942625140 2337 dbSNP
rs542611835 2349 dbSNP
rs1039509871 2355 dbSNP
rs1454908826 2360 dbSNP
rs529468783 2361 dbSNP
rs954227943 2368 dbSNP
rs1006573826 2398 dbSNP
rs1402643490 2402 dbSNP
rs1408514578 2404 dbSNP
rs1181183611 2410 dbSNP
rs1471449248 2414 dbSNP
rs1259544604 2419 dbSNP
rs1393275539 2421 dbSNP
rs561446666 2422 dbSNP
rs886055421 2426 dbSNP
rs1438333434 2437 dbSNP
rs901036443 2440 dbSNP
rs1371512120 2441 dbSNP
rs997934424 2446 dbSNP
rs1217555748 2456 dbSNP
rs547807530 2459 dbSNP
rs1304800411 2460 dbSNP
rs1228183245 2464 dbSNP
rs1348966873 2464 dbSNP
rs1295690598 2467 dbSNP
rs972842845 2468 dbSNP
rs1315133754 2478 dbSNP
rs540852774 2478 dbSNP
rs918505961 2480 dbSNP
rs952565992 2481 dbSNP
rs1433234549 2485 dbSNP
rs984045435 2486 dbSNP
rs1241267470 2493 dbSNP
rs1158628777 2515 dbSNP
rs886882862 2527 dbSNP
rs1334411673 2528 dbSNP
rs1212096691 2534 dbSNP
rs1253532527 2550 dbSNP
rs189798514 2552 dbSNP
rs1232561524 2556 dbSNP
rs1016611249 2560 dbSNP
rs937175347 2561 dbSNP
rs1177081439 2571 dbSNP
rs1249042325 2575 dbSNP
rs1275417985 2575 dbSNP
rs551661105 2578 dbSNP
rs1311122137 2581 dbSNP
rs1002489130 2583 dbSNP
rs1035179839 2584 dbSNP
rs199859568 2587 dbSNP
rs1320178256 2588 dbSNP
rs1433126568 2588 dbSNP
rs41351949 2588 dbSNP
rs886055422 2588 dbSNP
rs551256605 2589 dbSNP
rs1457401928 2590 dbSNP
rs74267227 2591 dbSNP
rs1172390529 2592 dbSNP
rs1459520025 2594 dbSNP
rs1042742697 2595 dbSNP
rs1186337008 2596 dbSNP
rs72491092 2596 dbSNP
rs988345595 2597 dbSNP
rs886055423 2601 dbSNP
rs41477650 2603 dbSNP
rs41431151 2619 dbSNP
rs1230209118 2620 dbSNP
rs889935159 2631 dbSNP
rs1296302188 2633 dbSNP
rs1373458622 2639 dbSNP
rs1302177534 2640 dbSNP
rs1019351165 2644 dbSNP
rs979363513 2648 dbSNP
rs775405244 2658 dbSNP
rs910592889 2658 dbSNP
rs942613708 2659 dbSNP
rs1430308031 2663 dbSNP
rs376034565 2676 dbSNP
rs1289030060 2677 dbSNP
rs1166168732 2679 dbSNP
rs41447745 2690 dbSNP
rs933796265 2695 dbSNP
rs181477362 2699 dbSNP
rs1197660928 2705 dbSNP
rs1432996978 2706 dbSNP
rs1046908074 2710 dbSNP
rs753090757 2712 dbSNP
rs1025697943 2715 dbSNP
rs1231627778 2725 dbSNP
rs952370533 2726 dbSNP
rs372156178 2727 dbSNP
rs958521240 2728 dbSNP
rs1329186562 2729 dbSNP
rs41412149 2738 dbSNP
rs1481895284 2742 dbSNP
rs766003916 2749 dbSNP
rs1038032706 2752 dbSNP
rs13414860 2758 dbSNP
rs1002438419 2759 dbSNP
rs41435647 2761 dbSNP
rs1473946901 2765 dbSNP
rs978215743 2768 dbSNP
rs961000546 2770 dbSNP
rs1010114709 2771 dbSNP
rs1021125577 2778 dbSNP
rs1409068286 2789 dbSNP
rs1473083429 2790 dbSNP
rs1168028891 2792 dbSNP
rs968102128 2795 dbSNP
rs979521783 2809 dbSNP
rs1356100057 2813 dbSNP
rs910540542 2815 dbSNP
rs1279400345 2820 dbSNP
rs151162733 2832 dbSNP
rs569412089 2844 dbSNP
rs886055424 2845 dbSNP
rs753522265 2848 dbSNP
rs376511354 2851 dbSNP
rs770449640 2853 dbSNP
rs1286411185 2864 dbSNP
rs890068368 2869 dbSNP
rs886055425 2870 dbSNP
rs536667456 2872 dbSNP
rs1312219520 2874 dbSNP
rs1393990292 2874 dbSNP
rs1374871651 2875 dbSNP
rs1413023209 2879 dbSNP
rs1295272942 2880 dbSNP
rs1380149780 2886 dbSNP
rs922484961 2901 dbSNP
rs933932851 2902 dbSNP
rs1293847057 2916 dbSNP
rs1309665052 2920 dbSNP
rs1206437043 2921 dbSNP
rs886055426 2925 dbSNP
rs942867773 2925 dbSNP
rs1485015310 2926 dbSNP
rs1212385593 2930 dbSNP
rs1464304814 2942 dbSNP
rs1237597123 2945 dbSNP
rs1235118402 2946 dbSNP
rs1474857790 2952 dbSNP
rs1184436443 2961 dbSNP
rs1241996489 2970 dbSNP
rs1421320050 2971 dbSNP
rs886055427 2980 dbSNP
rs1327639206 2982 dbSNP
rs764212197 2983 dbSNP
rs1320860144 2984 dbSNP
rs886055428 2987 dbSNP
rs778352353 2988 dbSNP
rs941074027 3003 dbSNP
rs368336354 3012 dbSNP
rs1428907187 3018 dbSNP
rs548104022 3020 dbSNP
rs1373557320 3027 dbSNP
rs1041567394 3028 dbSNP
rs1436570583 3031 dbSNP
rs901346978 3034 dbSNP
rs569419852 3036 dbSNP
rs140099864 3038 dbSNP
rs994294045 3059 dbSNP
rs1002246972 3062 dbSNP
rs1246032446 3064 dbSNP
rs41339144 3072 dbSNP
rs1451906799 3091 dbSNP
rs888093961 3092 dbSNP
rs1287358610 3104 dbSNP
rs1207958662 3118 dbSNP
rs1005256398 3120 dbSNP
rs1034266229 3124 dbSNP
rs896690882 3128 dbSNP
rs1229593004 3129 dbSNP
rs41522046 3138 dbSNP
rs1346314056 3139 dbSNP
rs1021533457 3147 dbSNP
rs1305101137 3154 dbSNP
rs904059899 3154 dbSNP
rs1439081809 3155 dbSNP
rs775218479 3174 dbSNP
rs1024532395 3177 dbSNP
rs1404070451 3186 dbSNP
rs967258115 3194 dbSNP
rs978564570 3198 dbSNP
rs1448865928 3201 dbSNP
rs544834871 3202 dbSNP
rs1388562266 3215 dbSNP
rs1193082405 3219 dbSNP
rs1017621829 3223 dbSNP
rs1478258556 3232 dbSNP
rs1245893236 3237 dbSNP
rs1054564918 3243 dbSNP
rs924058344 3249 dbSNP
rs563614665 3251 dbSNP
rs1275184708 3259 dbSNP
rs964779266 3266 dbSNP
rs1339389262 3267 dbSNP
rs1243496681 3273 dbSNP
rs1280335910 3275 dbSNP
rs976457396 3278 dbSNP
rs1465124021 3279 dbSNP
rs760523499 3280 dbSNP
rs955460194 3284 dbSNP
rs1192763285 3285 dbSNP
rs982746965 3289 dbSNP
rs1309104169 3290 dbSNP
rs911222498 3306 dbSNP
rs908355147 3308 dbSNP
rs942910587 3308 dbSNP
rs1178570176 3315 dbSNP
rs796347456 3322 dbSNP
rs1424288495 3324 dbSNP
rs1393097479 3330 dbSNP
rs1189258903 3331 dbSNP
rs1455509497 3340 dbSNP
rs1174221410 3342 dbSNP
rs879512859 3345 dbSNP
rs1041313108 3348 dbSNP
rs901313139 3352 dbSNP
rs1047237750 3353 dbSNP
rs1275980169 3361 dbSNP
rs1157096312 3362 dbSNP
rs886055429 3366 dbSNP
rs1289555588 3367 dbSNP
rs1409731127 3375 dbSNP
rs530687264 3378 dbSNP
rs941149465 3386 dbSNP
rs973913470 3394 dbSNP
rs1448770645 3397 dbSNP
rs542634156 3398 dbSNP
rs1174161984 3400 dbSNP
rs1458648443 3412 dbSNP
rs536711035 3421 dbSNP
rs1158397187 3422 dbSNP
rs1443686978 3423 dbSNP
rs1181943850 3424 dbSNP
rs1482609086 3426 dbSNP
rs1275972013 3436 dbSNP
rs1235402112 3437 dbSNP
rs1349250158 3438 dbSNP
rs1221574832 3440 dbSNP
rs937777759 3442 dbSNP
rs1269149882 3443 dbSNP
rs1228395060 3446 dbSNP
rs528237173 3449 dbSNP
rs1212727813 3456 dbSNP
rs1250866127 3470 dbSNP
rs1056531666 3471 dbSNP
rs886055430 3474 dbSNP
rs1378480419 3477 dbSNP
rs886055431 3479 dbSNP
rs1437522296 3484 dbSNP
rs945607314 3486 dbSNP
rs1232228847 3488 dbSNP
rs773594343 3489 dbSNP
rs1370134007 3495 dbSNP
rs904133783 3496 dbSNP
rs1000960935 3498 dbSNP
rs546715677 3500 dbSNP
rs1017738461 3501 dbSNP
rs763231323 3505 dbSNP
rs1422757000 3513 dbSNP
rs6752492 3514 dbSNP
rs1030732308 3515 dbSNP
rs1449697452 3522 dbSNP
rs1246964501 3525 dbSNP
rs1414332561 3528 dbSNP
rs1457926400 3537 dbSNP
rs1208515661 3540 dbSNP
rs950771076 3541 dbSNP
rs967604227 3550 dbSNP
rs1267789040 3554 dbSNP
rs977317491 3555 dbSNP
rs1321250561 3558 dbSNP
rs184599061 3560 dbSNP
rs1312992421 3567 dbSNP
rs368946094 3574 dbSNP
rs1366205593 3585 dbSNP
rs983874834 3586 dbSNP
rs1297066259 3592 dbSNP
rs1392663108 3595 dbSNP
rs1380331135 3597 dbSNP
rs766608918 3599 dbSNP
rs962626194 3611 dbSNP
rs1252009209 3614 dbSNP
rs774470649 3614 dbSNP
rs1457323159 3616 dbSNP
rs1363248643 3618 dbSNP
rs958074769 3637 dbSNP
rs1429767366 3646 dbSNP
rs1389195551 3652 dbSNP
rs926482607 3657 dbSNP
rs1427151086 3662 dbSNP
rs911191408 3664 dbSNP
rs937750533 3671 dbSNP
rs202089864 3693 dbSNP
rs199723186 3694 dbSNP
rs200619033 3695 dbSNP
rs201705079 3697 dbSNP
rs555167698 3699 dbSNP
rs1207399748 3700 dbSNP
rs550863240 3706 dbSNP
rs1274225776 3714 dbSNP
rs1225473398 3717 dbSNP
rs917557434 3719 dbSNP
rs1280759187 3721 dbSNP
rs945039338 3724 dbSNP
rs1350606665 3726 dbSNP
rs1042051838 3733 dbSNP
rs1343585217 3735 dbSNP
rs1409937448 3745 dbSNP
rs904081061 3745 dbSNP
rs936929606 3757 dbSNP
rs1336591964 3763 dbSNP
rs1210198825 3766 dbSNP
rs1165843290 3768 dbSNP
rs760015673 3769 dbSNP
rs1379799708 3770 dbSNP
rs1177249794 3772 dbSNP
rs910059416 3777 dbSNP
rs1267402311 3790 dbSNP
rs41486645 3793 dbSNP
rs997989145 3795 dbSNP
rs761952500 3799 dbSNP
rs1251139888 3804 dbSNP
rs1183941347 3812 dbSNP
rs1254002966 3813 dbSNP
rs768062101 3816 dbSNP
rs1232288419 3824 dbSNP
rs1055574054 3826 dbSNP
rs753074254 3829 dbSNP
rs1472964728 3831 dbSNP
rs1290185925 3835 dbSNP
rs536525827 3836 dbSNP
rs1013952450 3843 dbSNP
rs1415945196 3846 dbSNP
rs886535066 3846 dbSNP
rs1004852055 3848 dbSNP
rs1016275437 3852 dbSNP
rs1469635142 3854 dbSNP
rs1427601072 3864 dbSNP
rs1246940959 3866 dbSNP
rs41486549 3867 dbSNP
rs903137576 3872 dbSNP
rs756480881 3873 dbSNP
rs1444155696 3885 dbSNP
rs1032772083 3888 dbSNP
rs1200064609 3894 dbSNP
rs1459854459 3907 dbSNP
rs1269773612 3909 dbSNP
rs1033500071 3915 dbSNP
rs959259807 3916 dbSNP
rs992420256 3917 dbSNP
rs917648366 3918 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acguccgucuuccccACCACUCc 5'
                         ||||||| 
Target 5' ---------------UGGUGAGc 3'
1 - 8
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000286186.6 | 3UTR | UGGUGAGCCAAGAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
69 hsa-miR-6511b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059269 CELF1 CUGBP Elav-like family member 1 2 2
MIRT061287 IPO7 importin 7 2 2
MIRT115533 MAZ MYC associated zinc finger protein 2 2
MIRT345986 BIRC5 baculoviral IAP repeat containing 5 2 8
MIRT379536 HNRNPK heterogeneous nuclear ribonucleoprotein K 2 2
MIRT442491 RBBP5 RB binding protein 5, histone lysine methyltransferase complex subunit 2 8
MIRT443701 HUNK hormonally up-regulated Neu-associated kinase 2 4
MIRT459167 HSPA6 heat shock protein family A (Hsp70) member 6 2 21
MIRT497179 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT497846 GATA6 GATA binding protein 6 2 4
MIRT519625 ZNF781 zinc finger protein 781 2 2
MIRT519838 ZFP69B ZFP69 zinc finger protein B 2 4
MIRT528560 DNAAF3 dynein axonemal assembly factor 3 2 2
MIRT530718 ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 2 2
MIRT530810 GPR182 G protein-coupled receptor 182 2 2
MIRT533265 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT533726 TMEM246 transmembrane protein 246 2 2
MIRT535547 P2RY2 purinergic receptor P2Y2 2 2
MIRT536019 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT539494 ACTN4 actinin alpha 4 2 2
MIRT541793 MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 2 8
MIRT554509 RUNX1T1 RUNX1 translocation partner 1 2 2
MIRT558784 CEP55 centrosomal protein 55 2 2
MIRT560013 ZNF525 zinc finger protein 525 2 2
MIRT560078 ZNF195 zinc finger protein 195 2 2
MIRT570135 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT570890 ZNF780A zinc finger protein 780A 2 2
MIRT607972 SNX22 sorting nexin 22 2 2
MIRT608104 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT610471 ADAMTS13 ADAM metallopeptidase with thrombospondin type 1 motif 13 2 4
MIRT611134 GGT7 gamma-glutamyltransferase 7 2 2
MIRT611448 NRIP3 nuclear receptor interacting protein 3 2 2
MIRT613019 GABPB1 GA binding protein transcription factor beta subunit 1 2 4
MIRT615753 C6 complement C6 2 2
MIRT620464 CERS6 ceramide synthase 6 2 2
MIRT632248 VPS41 VPS41, HOPS complex subunit 2 2
MIRT636099 ZDHHC22 zinc finger DHHC-type containing 22 2 2
MIRT637452 ZNF324B zinc finger protein 324B 2 2
MIRT638927 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT646768 WDR3 WD repeat domain 3 2 2
MIRT652610 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT652868 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT653655 SLC27A4 solute carrier family 27 member 4 2 2
MIRT657089 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT657884 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT662919 MED18 mediator complex subunit 18 2 2
MIRT685622 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT687427 NRIP1 nuclear receptor interacting protein 1 2 2
MIRT692304 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT695127 PRY2 PTPN13-like, Y-linked 2 2 2
MIRT695144 PRY PTPN13-like, Y-linked 2 2
MIRT696286 IER3IP1 immediate early response 3 interacting protein 1 2 2
MIRT699350 SLC35E1 solute carrier family 35 member E1 2 2
MIRT709901 AGO1 argonaute 1, RISC catalytic component 2 2
MIRT710877 SLC25A42 solute carrier family 25 member 42 2 2
MIRT711365 MED7 mediator complex subunit 7 2 2
MIRT711444 FRMPD3 FERM and PDZ domain containing 3 2 2
MIRT713221 RCAN2 regulator of calcineurin 2 2 2
MIRT713281 LAIR1 leukocyte associated immunoglobulin like receptor 1 2 2
MIRT714195 TRAF7 TNF receptor associated factor 7 2 2
MIRT715152 IL12B interleukin 12B 2 2
MIRT719197 CASP10 caspase 10 2 2
MIRT719469 SRF serum response factor 2 2
MIRT720197 MPP6 membrane palmitoylated protein 6 2 2
MIRT720449 SLC16A5 solute carrier family 16 member 5 2 2
MIRT720461 RAB31 RAB31, member RAS oncogene family 2 2
MIRT721646 ZNF207 zinc finger protein 207 2 2
MIRT722001 CLLU1OS chronic lymphocytic leukemia up-regulated 1 opposite strand 2 2
MIRT725521 FAM229B family with sequence similarity 229 member B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6511b-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-6511b-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-6511b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-6511b-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6511b-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-6511b-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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