pre-miRNA Information
pre-miRNA hsa-mir-3911   
Genomic Coordinates chr9: 127690687 - 127690795
Description Homo sapiens miR-3911 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3911
Sequence 12| UGUGUGGAUCCUGGAGGAGGCA |33
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
431152 7 ClinVar
COSM3847691 15 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs943029638 2 dbSNP
rs780635543 3 dbSNP
rs371437556 6 dbSNP
rs1135401819 7 dbSNP
rs748706130 14 dbSNP
rs1403241180 15 dbSNP
rs779344153 17 dbSNP
rs755366929 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MS4A1   
Synonyms B1, Bp35, CD20, CVID5, LEU-16, MS4A2, S7
Description membrane spanning 4-domains A1
Transcript NM_021950   
Other Transcripts NM_152866   
Expression
Putative miRNA Targets on MS4A1
3'UTR of MS4A1
(miRNA target sites are highlighted)
>MS4A1|NM_021950|3'UTR
   1 GTGATTTCTTCTGTTTTCTGTTTCCTTTTTTAAACATTAGTGTTCATAGCTTCCAAGAGACATGCTGACTTTCATTTCTT
  81 GAGGTACTCTGCACATACGCACCACATCTCTATCTGGCCTTTGCATGGAGTGACCATAGCTCCTTCTCTCTTACATTGAA
 161 TGTAGAGAATGTAGCCATTGTAGCAGCTTGTGTTGTCACGCTTCTTCTTTTGAGCAACTTTCTTACACTGAAGAAAGGCA
 241 GAATGAGTGCTTCAGAATGTGATTTCCTACTAACCTGTTCCTTGGATAGGCTTTTTAGTATAGTATTTTTTTTTGTCATT
 321 TTCTCCATCAACAACCAGGGAGACTGCACCTGATGGAAAAGATATATGACTGCTTCATGACATTCCTAAACTATCTTTTT
 401 TTTATTCCACATCTACGTTTTTGGTGGAGTCCCTTTTGCATCATTGTTTTAAGGATGATAAAAAAAAATAACAACTAGGG
 481 ACAATACAGAACCCATTCCATTTATCTTTCTACAGGGCTGACATTGTGGCACATTCTTAGAGTTACCACACCCCATGAGG
 561 GAAGCTCTAAATAGCCAACACCCATCTGTTTTTTGTAAAAACAGCATAGCTTATACATGGACATGTCTCTGCCTTAACTT
 641 TTCCTAACTCCCACTCTAGGCTATTGTTTGCATGTCTACCTACTTTTAGCCATTATGCGAGAAAAGAAAAAAATGACCAT
 721 AGAAAATGCCACCATGAGGTGCCCAAATTTCAAATAATAATTAACATTTAGTTATATTTATAATTTCCAGATGACAAAGT
 801 ATTTCATCAAATAACTTCATTTGATGTTCCATGATCAAGAAAGAATCCCTATCTCTATTTTACAAGTAATTCAAAGAGGC
 881 CAAATAACTTGTAAACAAGAAAAGGTAACTTGTCAACAGTCATAACTAGTAATTATGAGAGCCTTGTTTCATAACCAGGT
 961 CTTCTTACTCAAATCCTGTGATGTTTGAAATAACCAAATTGTCTCTCCAATGTCTGCATAAACTGTGAGAGCCAAGTCAA
1041 CAGCTTTTATCAAGAATTTACTCTCTGACCAGCAATAAACAAGCACTGAGAGACACAGAGAGCCAGATTCAGATTTTACC
1121 CATGGGGATAAAAAGACTCAGACTTTCACCACATTTGGAAAACTACTTGCATCATAAATATATAATAACTGGTAGTTTAT
1201 ATGAAGCAGACACTAAGTGCTATAGACACTCTCAGAATATCATACTTGGAAACAATGTAATTAAAATGCCGAATCTGAGT
1281 CAACAGCTGCCCTACTTTTCAATTCAGATATACTAGTACCTTACCTAGAAATAATGTTAACCTAGGGTGAAGTCACTATA
1361 ATCTGTAGTCTATTATTTGGGCATTTGCTACATGATGAGTGCTGCCAGATTGTGGCAGGTAAAGAGACAATGTAATTTGC
1441 ACTCCCTATGATATTTCTACATTTTTAGCGACCACTAGTGGAAGACATTCCCCAAAATTAGAAAAAAAGGAGATAGAAGA
1521 TTTCTGTCTATGTAAAGTTCTCAAAATTTGTTCTAAATTAATAAAACTATCTTTGTGTTCTTTTCTGCAACAGATGATTC
1601 CAACATGGGTGTTTGTCTATTCTTCTTTACTCTTGAAACATTAGACCATGGGAGGCTCTTACAGCCTTGAGTTGATATTT
1681 ATACAACCCAAATCTAGGTTTGAACGGTGAGGTGTCAGGTCATCAAATATTCATGTCTATATAGTCTTACACAGGTTCTC
1761 AAAAAAAATGTTCATGGGATAGGTCATTGATAATGGATTCCTTATTCTGAGAACTCCAGACGACTGAAATATATGAGAGA
1841 AGGAAAAGGACATAGTAGGAGCAGGCCTGAGAAAAAAATGAAAGTCAGAAATCTTTAAAAAAATACAAGATCTTATTTCT
1921 ATCTTATTTTTTCTCCTCTTCTGAAATATATATGAGGATTCCTCTCCAAACCCATGGTTTCTCTAAGAATTTTGAGTCAT
2001 TTGTATGACCTCAAATAATTAGTTTTAGCTGACCTCACATAACTCCTTATAATAGGAGACATCTTTAATGTCTGCTATTA
2081 AAGAAGGATGAAAATTCCTATGACCTTCTCCCCGATTATCCCTTTGGCAATATAGAGTCAAATAATAACATTGACCAATA
2161 GTAAACATGCTTTGCCAAGAAGTAGAAGATATATTCTCTAGCCTTAGTTTTTCCTCCCAATTTGCATTTTTGTAAAAATA
2241 ATGTTGTATCCACAAAGGAAATAAACTTTAAAAACCCAAGTGCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acGGAGGAGGUCCUAGGUGUGu 5'
            :||::|::    ||||||: 
Target 5' taTCTTTTTTTTATTCCACATc 3'
392 - 413 132.00 -13.00
2
miRNA  3' acggaggagguCCUAGGUGUgu 5'
                     | |||||||  
Target 5' aaaataatgttGTATCCACAaa 3'
2235 - 2256 127.00 -8.70
3
miRNA  3' acgGAGGAGGUCC-U-AGGUGUGu 5'
             :|:||: ||| | ||::||| 
Target 5' tcaTTTCTTGAGGTACTCTGCACa 3'
72 - 95 127.00 -16.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30148997 9 COSMIC
COSN31529079 9 COSMIC
COSN30131825 11 COSMIC
COSN30507415 17 COSMIC
COSN31528536 23 COSMIC
COSN31529631 45 COSMIC
COSN30542704 90 COSMIC
COSN30177454 129 COSMIC
COSN8686481 149 COSMIC
COSN19173374 219 COSMIC
COSN31572963 289 COSMIC
COSN28878812 315 COSMIC
COSN8282226 347 COSMIC
COSN26238209 432 COSMIC
COSN17546916 542 COSMIC
COSN26886286 674 COSMIC
COSN22466949 696 COSMIC
COSN16510608 800 COSMIC
COSN5262641 899 COSMIC
COSN8686482 947 COSMIC
COSN5262642 965 COSMIC
COSN16087754 995 COSMIC
COSN17183327 1002 COSMIC
COSN27788040 1013 COSMIC
COSN5307855 1085 COSMIC
COSN32063937 1421 COSMIC
COSN24522801 1517 COSMIC
COSN18825922 1520 COSMIC
COSN15824630 1653 COSMIC
COSN20092360 1818 COSMIC
COSN26607167 1973 COSMIC
COSN32057887 2051 COSMIC
COSN20092361 2071 COSMIC
COSN22764957 2084 COSMIC
COSN28066505 2208 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1440930477 2 dbSNP
rs200077365 6 dbSNP
rs1372768050 11 dbSNP
rs201161107 16 dbSNP
rs1246697735 17 dbSNP
rs752913290 19 dbSNP
rs1347717186 20 dbSNP
rs1232744631 25 dbSNP
rs756275023 26 dbSNP
rs1438451399 27 dbSNP
rs1203976690 31 dbSNP
rs1231365627 36 dbSNP
rs749370379 38 dbSNP
rs771046093 39 dbSNP
rs201836816 41 dbSNP
rs199924787 42 dbSNP
rs1452430687 44 dbSNP
rs1167875837 47 dbSNP
rs201192611 48 dbSNP
rs746775424 49 dbSNP
rs771863023 51 dbSNP
rs202089260 63 dbSNP
rs200397280 74 dbSNP
rs200785869 76 dbSNP
rs977898272 86 dbSNP
rs903435668 92 dbSNP
rs924840805 93 dbSNP
rs201730785 95 dbSNP
rs1453122910 96 dbSNP
rs1267928154 97 dbSNP
rs186409966 99 dbSNP
rs201574956 100 dbSNP
rs199520538 102 dbSNP
rs200295884 104 dbSNP
rs12800620 111 dbSNP
rs901497911 113 dbSNP
rs201536499 115 dbSNP
rs1332064089 119 dbSNP
rs199753311 120 dbSNP
rs1328659751 123 dbSNP
rs1047937856 125 dbSNP
rs148993277 127 dbSNP
rs201591426 133 dbSNP
rs1349351442 137 dbSNP
rs1434199093 144 dbSNP
rs1373790707 151 dbSNP
rs199625336 156 dbSNP
rs200872082 157 dbSNP
rs1293311957 158 dbSNP
rs1033449147 159 dbSNP
rs908457382 163 dbSNP
rs1471560527 164 dbSNP
rs201813166 165 dbSNP
rs200184944 181 dbSNP
rs1205163803 182 dbSNP
rs35930599 184 dbSNP
rs1013441981 188 dbSNP
rs201964094 189 dbSNP
rs189633925 200 dbSNP
rs73483134 201 dbSNP
rs1352807948 207 dbSNP
rs1289529977 209 dbSNP
rs201677991 218 dbSNP
rs1183189781 230 dbSNP
rs199983028 234 dbSNP
rs148229051 240 dbSNP
rs1054910589 242 dbSNP
rs1032188859 243 dbSNP
rs957454437 244 dbSNP
rs1455445486 248 dbSNP
rs1414037130 251 dbSNP
rs202092127 252 dbSNP
rs990341701 256 dbSNP
rs1165616362 259 dbSNP
rs200636008 269 dbSNP
rs201367222 275 dbSNP
rs950305878 278 dbSNP
rs1331695493 292 dbSNP
rs1424312337 296 dbSNP
rs1045861530 299 dbSNP
rs372583249 302 dbSNP
rs34273920 306 dbSNP
rs903442753 306 dbSNP
rs999035095 307 dbSNP
rs574741004 310 dbSNP
rs943637060 313 dbSNP
rs202019617 316 dbSNP
rs1392861138 317 dbSNP
rs1329456949 318 dbSNP
rs1376151202 324 dbSNP
rs1051756 332 dbSNP
rs923508663 344 dbSNP
rs201494850 347 dbSNP
rs199813136 348 dbSNP
rs1316593901 354 dbSNP
rs1164431211 355 dbSNP
rs556964362 366 dbSNP
rs200648213 374 dbSNP
rs201563749 380 dbSNP
rs199698823 382 dbSNP
rs200940219 393 dbSNP
rs559584718 396 dbSNP
rs576911383 396 dbSNP
rs201303899 400 dbSNP
rs1292647126 401 dbSNP
rs199991623 404 dbSNP
rs1341926741 405 dbSNP
rs200613815 411 dbSNP
rs887540796 412 dbSNP
rs1028862902 414 dbSNP
rs201552453 417 dbSNP
rs200193401 418 dbSNP
rs769579500 423 dbSNP
rs201003714 425 dbSNP
rs894973148 429 dbSNP
rs202201111 439 dbSNP
rs200009543 445 dbSNP
rs1456863381 448 dbSNP
rs1008486309 451 dbSNP
rs141211968 452 dbSNP
rs1015397446 457 dbSNP
rs1243860220 459 dbSNP
rs555998345 460 dbSNP
rs974011331 460 dbSNP
rs201311564 461 dbSNP
rs1025311950 480 dbSNP
rs1437799854 486 dbSNP
rs919829803 488 dbSNP
rs902401985 496 dbSNP
rs201955982 504 dbSNP
rs1462681234 505 dbSNP
rs200214669 513 dbSNP
rs959061773 518 dbSNP
rs1399243987 521 dbSNP
rs201351594 522 dbSNP
rs1365255179 527 dbSNP
rs1464032769 539 dbSNP
rs1437074067 551 dbSNP
rs1338577259 553 dbSNP
rs1382911949 558 dbSNP
rs999283070 560 dbSNP
rs202130852 567 dbSNP
rs1394887585 575 dbSNP
rs1031655119 580 dbSNP
rs76267399 581 dbSNP
rs145209182 582 dbSNP
rs199572946 584 dbSNP
rs1427660172 587 dbSNP
rs200764520 588 dbSNP
rs1046335723 593 dbSNP
rs201247814 595 dbSNP
rs1250263410 597 dbSNP
rs199865052 604 dbSNP
rs200487626 607 dbSNP
rs1255577718 608 dbSNP
rs1208256080 609 dbSNP
rs976213639 609 dbSNP
rs923531237 611 dbSNP
rs201493823 618 dbSNP
rs1468913768 620 dbSNP
rs950971425 624 dbSNP
rs996804012 625 dbSNP
rs761420917 626 dbSNP
rs1286409702 634 dbSNP
rs1411074457 638 dbSNP
rs983544957 639 dbSNP
rs114470736 652 dbSNP
rs200945733 654 dbSNP
rs1360597482 657 dbSNP
rs201628676 663 dbSNP
rs200018414 665 dbSNP
rs1457047713 670 dbSNP
rs200993614 673 dbSNP
rs201809734 680 dbSNP
rs200136695 684 dbSNP
rs200909483 695 dbSNP
rs1473233863 696 dbSNP
rs1255520751 697 dbSNP
rs202017688 698 dbSNP
rs200427955 699 dbSNP
rs201343011 700 dbSNP
rs1429386644 702 dbSNP
rs1192702837 703 dbSNP
rs1266062279 707 dbSNP
rs1230114969 715 dbSNP
rs201943434 716 dbSNP
rs369570028 717 dbSNP
rs1317516318 718 dbSNP
rs200336767 719 dbSNP
rs1311373121 722 dbSNP
rs1422691427 728 dbSNP
rs1393803271 732 dbSNP
rs902453303 736 dbSNP
rs1380801558 738 dbSNP
rs201132358 740 dbSNP
rs999438806 741 dbSNP
rs1386882669 746 dbSNP
rs1053564003 753 dbSNP
rs1161877991 769 dbSNP
rs756483462 771 dbSNP
rs1458229506 779 dbSNP
rs137884191 781 dbSNP
rs199790614 790 dbSNP
rs1368458909 793 dbSNP
rs1178515852 795 dbSNP
rs1026943699 796 dbSNP
rs893140713 807 dbSNP
rs1011544856 819 dbSNP
rs1257057823 833 dbSNP
rs1465472971 856 dbSNP
rs766906073 858 dbSNP
rs1300620768 859 dbSNP
rs754089151 868 dbSNP
rs35080829 871 dbSNP
rs1245956965 878 dbSNP
rs964761727 879 dbSNP
rs1486119659 880 dbSNP
rs201027934 881 dbSNP
rs917563484 891 dbSNP
rs1323022854 897 dbSNP
rs970904143 898 dbSNP
rs182349761 904 dbSNP
rs1362672412 906 dbSNP
rs1436299016 910 dbSNP
rs977895414 910 dbSNP
rs923683331 917 dbSNP
rs142623086 919 dbSNP
rs755287984 926 dbSNP
rs1292328088 928 dbSNP
rs199578420 936 dbSNP
rs1030479355 944 dbSNP
rs200774035 948 dbSNP
rs1338921155 952 dbSNP
rs1054512681 960 dbSNP
rs1392269336 964 dbSNP
rs1190194792 965 dbSNP
rs983711687 968 dbSNP
rs541565636 971 dbSNP
rs1266527879 981 dbSNP
rs1207966573 984 dbSNP
rs35930814 985 dbSNP
rs1489447930 988 dbSNP
rs1291867507 991 dbSNP
rs908907781 994 dbSNP
rs932876162 995 dbSNP
rs146041500 998 dbSNP
rs990411396 1002 dbSNP
rs199764100 1013 dbSNP
rs1228567740 1017 dbSNP
rs1330859919 1020 dbSNP
rs186969494 1037 dbSNP
rs1389027616 1038 dbSNP
rs949123013 1039 dbSNP
rs556895158 1050 dbSNP
rs1427905472 1052 dbSNP
rs570515035 1069 dbSNP
rs1037154551 1081 dbSNP
rs12287265 1088 dbSNP
rs553090374 1092 dbSNP
rs1196565512 1093 dbSNP
rs199971878 1096 dbSNP
rs374779981 1097 dbSNP
rs1441198514 1099 dbSNP
rs893694264 1104 dbSNP
rs1276278238 1107 dbSNP
rs1195986335 1119 dbSNP
rs895079998 1121 dbSNP
rs201137573 1128 dbSNP
rs1343933998 1140 dbSNP
rs1254612481 1142 dbSNP
rs768798828 1144 dbSNP
rs1011596287 1154 dbSNP
rs201635252 1156 dbSNP
rs34899958 1157 dbSNP
rs1288304630 1166 dbSNP
rs200004523 1168 dbSNP
rs1429708003 1170 dbSNP
rs1432563493 1172 dbSNP
rs138664341 1180 dbSNP
rs1414119535 1183 dbSNP
rs202217895 1193 dbSNP
rs978157396 1195 dbSNP
rs200403114 1201 dbSNP
rs1030708580 1202 dbSNP
rs957748421 1203 dbSNP
rs990289822 1206 dbSNP
rs914718455 1223 dbSNP
rs200790187 1227 dbSNP
rs201747912 1242 dbSNP
rs997597502 1243 dbSNP
rs1181976192 1246 dbSNP
rs533116106 1251 dbSNP
rs1202500833 1264 dbSNP
rs748126267 1271 dbSNP
rs200284201 1272 dbSNP
rs1227062580 1275 dbSNP
rs1331929084 1278 dbSNP
rs1051461 1294 dbSNP
rs191259416 1299 dbSNP
rs866886102 1309 dbSNP
rs1447411933 1312 dbSNP
rs199521187 1313 dbSNP
rs1338859064 1320 dbSNP
rs912800054 1324 dbSNP
rs1358312142 1332 dbSNP
rs1406518991 1336 dbSNP
rs200316461 1339 dbSNP
rs1005420296 1340 dbSNP
rs201444383 1342 dbSNP
rs117334147 1348 dbSNP
rs563553359 1359 dbSNP
rs963576091 1360 dbSNP
rs745871468 1363 dbSNP
rs544927271 1364 dbSNP
rs1189164341 1365 dbSNP
rs1037401148 1370 dbSNP
rs1247793952 1374 dbSNP
rs200770014 1376 dbSNP
rs149307450 1379 dbSNP
rs201234122 1380 dbSNP
rs1285584667 1382 dbSNP
rs183010397 1389 dbSNP
rs199618969 1394 dbSNP
rs1354363788 1399 dbSNP
rs529223194 1402 dbSNP
rs200711448 1405 dbSNP
rs1246977602 1408 dbSNP
rs202015731 1411 dbSNP
rs970919176 1416 dbSNP
rs548562144 1417 dbSNP
rs200155913 1421 dbSNP
rs200755814 1425 dbSNP
rs1317604563 1429 dbSNP
rs978621353 1432 dbSNP
rs17155034 1438 dbSNP
rs1318915967 1440 dbSNP
rs935188269 1441 dbSNP
rs200041274 1447 dbSNP
rs200970608 1449 dbSNP
rs748908446 1454 dbSNP
rs1444853140 1455 dbSNP
rs35600635 1468 dbSNP
rs201675440 1469 dbSNP
rs3802957 1470 dbSNP
rs1039081906 1471 dbSNP
rs774078845 1473 dbSNP
rs17155041 1474 dbSNP
rs530669417 1475 dbSNP
rs1221448555 1483 dbSNP
rs1051856976 1486 dbSNP
rs954272554 1492 dbSNP
rs886487504 1493 dbSNP
rs1419601153 1494 dbSNP
rs1157591977 1499 dbSNP
rs1377918620 1500 dbSNP
rs1292091137 1502 dbSNP
rs1426201487 1502 dbSNP
rs1223334247 1511 dbSNP
rs763360319 1513 dbSNP
rs202224807 1514 dbSNP
rs1005062755 1515 dbSNP
rs1225837994 1515 dbSNP
rs1016369723 1517 dbSNP
rs774654458 1523 dbSNP
rs899455177 1532 dbSNP
rs944254159 1533 dbSNP
rs200563443 1536 dbSNP
rs550507758 1539 dbSNP
rs1012448295 1541 dbSNP
rs1023298897 1542 dbSNP
rs201402129 1543 dbSNP
rs1435669015 1551 dbSNP
rs1446678838 1556 dbSNP
rs1307227257 1557 dbSNP
rs972745010 1559 dbSNP
rs202008743 1560 dbSNP
rs970423170 1564 dbSNP
rs1361629369 1579 dbSNP
rs918570639 1592 dbSNP
rs142874024 1595 dbSNP
rs931285687 1596 dbSNP
rs1369515686 1599 dbSNP
rs200353147 1601 dbSNP
rs956636113 1610 dbSNP
rs1166356136 1612 dbSNP
rs1048540771 1615 dbSNP
rs767062009 1619 dbSNP
rs1420636709 1620 dbSNP
rs201491674 1635 dbSNP
rs199810390 1641 dbSNP
rs947914619 1650 dbSNP
rs1271686362 1651 dbSNP
rs73483136 1657 dbSNP
rs942627891 1662 dbSNP
rs1207522029 1665 dbSNP
rs201447352 1667 dbSNP
rs199740275 1670 dbSNP
rs200835972 1672 dbSNP
rs1273430261 1674 dbSNP
rs201804653 1677 dbSNP
rs922470064 1679 dbSNP
rs199989351 1683 dbSNP
rs1285151990 1689 dbSNP
rs200610209 1690 dbSNP
rs201551199 1691 dbSNP
rs1305690936 1695 dbSNP
rs200172791 1695 dbSNP
rs1463199601 1703 dbSNP
rs201122105 1706 dbSNP
rs201999008 1707 dbSNP
rs1028740401 1732 dbSNP
rs1432017061 1739 dbSNP
rs200045540 1740 dbSNP
rs1472573634 1743 dbSNP
rs953209924 1744 dbSNP
rs188538512 1753 dbSNP
rs1481049639 1755 dbSNP
rs201954295 1758 dbSNP
rs566321989 1761 dbSNP
rs200205500 1763 dbSNP
rs1321184528 1769 dbSNP
rs1020172511 1770 dbSNP
rs1224016287 1771 dbSNP
rs201349981 1773 dbSNP
rs754211868 1774 dbSNP
rs1412535157 1775 dbSNP
rs376433712 1779 dbSNP
rs1403239994 1780 dbSNP
rs202133624 1783 dbSNP
rs1355447311 1784 dbSNP
rs200569841 1792 dbSNP
rs192928733 1800 dbSNP
rs1045298360 1806 dbSNP
rs973004967 1807 dbSNP
rs1301917455 1814 dbSNP
rs576887252 1815 dbSNP
rs201410616 1822 dbSNP
rs199580963 1823 dbSNP
rs1453384906 1829 dbSNP
rs200483657 1830 dbSNP
rs370821261 1834 dbSNP
rs1031065369 1838 dbSNP
rs1457163891 1844 dbSNP
rs956510091 1847 dbSNP
rs1410420237 1853 dbSNP
rs1161296209 1857 dbSNP
rs545789131 1857 dbSNP
rs1283674438 1863 dbSNP
rs35257728 1872 dbSNP
rs918830923 1872 dbSNP
rs1180315669 1882 dbSNP
rs201555882 1884 dbSNP
rs1244744432 1885 dbSNP
rs199858541 1893 dbSNP
rs1297503532 1895 dbSNP
rs984081389 1897 dbSNP
rs1022176499 1903 dbSNP
rs200512906 1905 dbSNP
rs1240500096 1917 dbSNP
rs963873818 1920 dbSNP
rs559315731 1921 dbSNP
rs1197955500 1928 dbSNP
rs184842320 1936 dbSNP
rs199720149 1948 dbSNP
rs1316097299 1951 dbSNP
rs1462270656 1952 dbSNP
rs758403019 1954 dbSNP
rs955444931 1963 dbSNP
rs188084881 1966 dbSNP
rs1454797754 1967 dbSNP
rs752131854 1973 dbSNP
rs147234865 1974 dbSNP
rs1446662739 1983 dbSNP
rs200820648 1984 dbSNP
rs1386114590 1997 dbSNP
rs201833400 2004 dbSNP
rs1183922879 2014 dbSNP
rs1448681567 2015 dbSNP
rs1206803758 2031 dbSNP
rs1486188121 2032 dbSNP
rs907861347 2035 dbSNP
rs1210289568 2037 dbSNP
rs927810195 2040 dbSNP
rs1051593 2051 dbSNP
rs191400286 2057 dbSNP
rs1037755958 2064 dbSNP
rs920646103 2070 dbSNP
rs201188736 2072 dbSNP
rs201807262 2073 dbSNP
rs1456856934 2077 dbSNP
rs948236480 2078 dbSNP
rs1198363387 2084 dbSNP
rs1367597682 2087 dbSNP
rs564065724 2089 dbSNP
rs1187864917 2096 dbSNP
rs1045188076 2098 dbSNP
rs533077475 2103 dbSNP
rs893722407 2105 dbSNP
rs1239196145 2111 dbSNP
rs200139201 2112 dbSNP
rs1051594 2114 dbSNP
rs1169172658 2121 dbSNP
rs1004189499 2122 dbSNP
rs202020121 2123 dbSNP
rs1371118238 2134 dbSNP
rs1470583292 2136 dbSNP
rs200454078 2138 dbSNP
rs201239500 2140 dbSNP
rs202119351 2147 dbSNP
rs1196587252 2151 dbSNP
rs1490705931 2157 dbSNP
rs1357466853 2159 dbSNP
rs1291918846 2169 dbSNP
rs200293189 2171 dbSNP
rs1203970531 2177 dbSNP
rs1009042556 2178 dbSNP
rs1253440827 2181 dbSNP
rs201130284 2183 dbSNP
rs1022058796 2190 dbSNP
rs963760120 2191 dbSNP
rs965959495 2193 dbSNP
rs996699100 2195 dbSNP
rs3802954 2198 dbSNP
rs200365154 2199 dbSNP
rs1217716911 2220 dbSNP
rs201024406 2225 dbSNP
rs1276063783 2244 dbSNP
rs1389888032 2246 dbSNP
rs1398915102 2258 dbSNP
rs955352627 2275 dbSNP
rs952905317 2277 dbSNP
rs1376958114 2283 dbSNP
rs199604086 2285 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acggAGGAGGUCCU--AGGUGugu 5'
              | ||  || |  |||||   
Target 5' ----UGCU-GAGAAAUUCCAC--- 3'
1 - 16
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000278888.3 | 3UTR | UGCUGAGAAAUUCCAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC 0.612 0.07 0.393 0.19 7 Click to see details
THCA -0.852 0.07 -1.000 0.5 4 Click to see details
LUSC -0.784 0.11 -0.600 0.2 4 Click to see details
BRCA -0.615 0.13 -0.900 0.02 5 Click to see details
BRCA -0.615 0.13 -0.900 0.02 5 Click to see details
BRCA -0.615 0.13 -0.900 0.02 5 Click to see details
BRCA -0.615 0.13 -0.900 0.02 5 Click to see details
BRCA -0.615 0.13 -0.900 0.02 5 Click to see details
BRCA -0.615 0.13 -0.900 0.02 5 Click to see details
BRCA -0.615 0.13 -0.900 0.02 5 Click to see details
70 hsa-miR-3911 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT207399 MAT2A methionine adenosyltransferase 2A 2 6
MIRT284537 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT291946 TPM4 tropomyosin 4 2 2
MIRT293609 PVR poliovirus receptor 2 2
MIRT357688 PAIP2 poly(A) binding protein interacting protein 2 2 2
MIRT451607 MEIS3P1 Meis homeobox 3 pseudogene 1 2 2
MIRT452110 IFITM1 interferon induced transmembrane protein 1 2 2
MIRT457804 KLHL25 kelch like family member 25 2 2
MIRT462730 EFNB1 ephrin B1 2 2
MIRT463219 ZNF131 zinc finger protein 131 2 2
MIRT464141 VPS28 VPS28, ESCRT-I subunit 2 2
MIRT467582 SLC7A5 solute carrier family 7 member 5 2 6
MIRT470824 PLXND1 plexin D1 2 2
MIRT474230 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT478989 COLGALT1 collagen beta(1-O)galactosyltransferase 1 2 2
MIRT479462 CDK6 cyclin dependent kinase 6 2 2
MIRT483558 SYT2 synaptotagmin 2 2 2
MIRT484483 SLC9A1 solute carrier family 9 member A1 2 2
MIRT485224 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT490356 DPYSL5 dihydropyrimidinase like 5 2 4
MIRT493177 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 2
MIRT509802 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT511815 HDGF heparin binding growth factor 2 2
MIRT512254 ARPP19 cAMP regulated phosphoprotein 19 2 6
MIRT513025 GPT2 glutamic--pyruvic transaminase 2 2 2
MIRT519640 ZNF772 zinc finger protein 772 2 4
MIRT531178 SIGLEC12 sialic acid binding Ig like lectin 12 (gene/pseudogene) 2 2
MIRT537870 EDA2R ectodysplasin A2 receptor 2 2
MIRT551914 IGLON5 IgLON family member 5 2 2
MIRT558359 DMTF1 cyclin D binding myb like transcription factor 1 2 2
MIRT559771 URGCP-MRPS24 URGCP-MRPS24 readthrough 2 4
MIRT559813 ZNF83 zinc finger protein 83 2 2
MIRT561999 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT565754 SERTAD2 SERTA domain containing 2 2 2
MIRT569423 DCAF8 DDB1 and CUL4 associated factor 8 2 2
MIRT569845 RGS5 regulator of G protein signaling 5 2 2
MIRT606928 CDK15 cyclin dependent kinase 15 2 2
MIRT607616 TMEM130 transmembrane protein 130 2 4
MIRT607629 TRIOBP TRIO and F-actin binding protein 2 2
MIRT607885 SATB1 SATB homeobox 1 2 2
MIRT607942 SSX2 SSX family member 2 2 4
MIRT608017 CARNS1 carnosine synthase 1 2 4
MIRT608036 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT608063 SSX2B SSX family member 2B 2 4
MIRT608558 SBK1 SH3 domain binding kinase 1 2 6
MIRT608915 NCDN neurochondrin 2 6
MIRT615876 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT618023 ELFN1 extracellular leucine rich repeat and fibronectin type III domain containing 1 2 2
MIRT620505 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT628101 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2 2
MIRT628700 ZNF548 zinc finger protein 548 2 2
MIRT630658 POU2F1 POU class 2 homeobox 1 2 2
MIRT643508 ZNF28 zinc finger protein 28 2 2
MIRT646379 SLC22A6 solute carrier family 22 member 6 2 2
MIRT660041 C15orf61 chromosome 15 open reading frame 61 2 2
MIRT687700 KRR1 KRR1, small subunit processome component homolog 2 2
MIRT688858 CAMKK2 calcium/calmodulin dependent protein kinase kinase 2 2 2
MIRT690443 REPIN1 replication initiator 1 2 2
MIRT690456 ZNF33A zinc finger protein 33A 2 2
MIRT693796 RHOG ras homolog family member G 2 2
MIRT694274 ZNF529 zinc finger protein 529 2 4
MIRT697697 WAC WW domain containing adaptor with coiled-coil 2 2
MIRT700242 RCC2 regulator of chromosome condensation 2 2 2
MIRT701836 MRPL37 mitochondrial ribosomal protein L37 2 2
MIRT704255 DHCR24 24-dehydrocholesterol reductase 2 2
MIRT707203 SDK2 sidekick cell adhesion molecule 2 2 2
MIRT710365 CREB5 cAMP responsive element binding protein 5 2 2
MIRT711943 WDFY1 WD repeat and FYVE domain containing 1 2 2
MIRT715496 MAZ MYC associated zinc finger protein 2 2
MIRT719250 MS4A1 membrane spanning 4-domains A1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3911 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3911 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-3911 Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-3911 Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3911 Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3911 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-mir-3911 Vincristine 5978 approved resistant cell line (W1)
hsa-mir-3911 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-miR-3911 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-3911 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3911 Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-3911 Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-3911 Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-3911 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3911 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3911 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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