pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol STAC   
Synonyms STAC1
Description SH3 and cysteine rich domain
Transcript NM_003149   
Expression
Putative miRNA Targets on STAC
3'UTR of STAC
(miRNA target sites are highlighted)
>STAC|NM_003149|3'UTR
   1 TTGCTGGCTCCTCCTCCGTTTGCAGTAGGCAAGCTCTGCTGCGATGCCTCTGCCTCATCTCACACTGCGTCAACCCAAAG
  81 GAGCTGCCGCACTGACCCAGCCCCCCAGGAAACAGTGAGACAAGAATCAAGTATCTGAGACTGTGGAGTAATAGCCACAA
 161 AACAGAGGGCCCACTGCACAGCATATCCAGGCTGCCACAGGTGGGGACGAGGCTGAGAGAGTCAGCAGGCAGAGCCAGAT
 241 GCCATGCTTGGCAGCAGCAGTAGGACTATAAACCACAGCTGTCCCCCAGGATCCCACTCCTTTCCTGTCTGTGTGGTGTA
 321 AGTTAACACACTGGAGTGTGCTCCAGTTTGCAGGGTAGCCCAGTGCAAGGTTCAGATCCATGTAGCTAAGTATTATCCTG
 401 CTTCCAGACCTATGTCACCAGTACCAATCAGTCAGTGTCATCACATTTCAGGCCCCAAGCAATCTCTGTGCAAAGCATCA
 481 GAAAGACCTGCTTCCCAGCCCCCAGCATTCCAGTGCTCTCCAGGCTTCCTCTCTTTGTGATTGTGCTGTCCAGAGTGTCC
 561 AGCTTGTTCTTTCTTTCTCTTCAGTCCTCTGAGTACATCTGGTGGTGTGCATTAGATGTGAGGGCTATGTTGACATGGCA
 641 TCACCTCCAAAGACCTGACCTGCCTAAAGACTGATGACAGGCCATCCTTCCTGCTGTTCTAGGTACTGGCCTGGGTGACA
 721 GAGCAGGACATGAGACATAGATACAGTGGGGAGGAGAAGTGGGGAAAGGTGGAGCAGAGAGTTCTTACTTATTGAAGATT
 801 ATACAGCCCTTTCGGTTATGAAGTCCCTGCTTGAAGGCAATGGACCTGGGGAAGAGACTATCACAAAAAGTCTCCATTTT
 881 CATTTTACATCCTCTCTATTGGAGGCAGCACTTTTCCCTCATGCTGTCCTATAGGACTCCACTTTGAAGGTTGTGCCTAC
 961 GTTGCAGGGAACTAGGAACATGGAGGGGAACCAACAACAGCATCTTAGAAGAAATGTAGCCAAATTGGAGTCCATTCTTC
1041 TTTAGGGCAGTATATGAAATCCTAGCAGATGTAAAATGGAAAAGAATCCTAATGCTTCTTCCTTCAGAAAGTAGAGGAAC
1121 TAGGGGCCCAATTAGCATCATCTAGGGGAATCTCTATTACTCTGTACTTATACTAATGTTTACAAGAATGCAATATACTG
1201 TGATGCCTTCCTACTCAAGCCTCCTAGCATTCAAACTTCCATCCTATTAGTCATTAACATGGTTAAACTTCAATTCACAA
1281 TCACCTTGGAATCAATGTCAGTTTGATTTATTTTGTTACAGAGCAATAAAATCATTAGAACAATGGTTTTTAAAAGACTT
1361 AAGTGGATGCATCCTATGCATGTAAGCATTATTTCCCAAACCAAAGCATCATTCATCTCCATTTATTTCTTTTGTTCCCG
1441 CTCAGTGTGAAGTTGGGAACTGAGAGGGGATGGCTGCTGGTTTCACAGAAGTTTGGATGCCTTACTCTTATCTTAAAGCC
1521 AGCATCCAGAATTTCCTCCCTCTCTGATGCCACATGCAAAACCAGGTGTACGATGTCAAGATGGATTCTTTGAGAGCCAG
1601 GGTAGATCATATGACTGCCTTTCTGTAAAATTGGATGCCTAGTACAAATGCTCTTTGCCTCTAATTCAGTATTCCATTTA
1681 ATAAAAACAATACAGTGGCTGGAAAGGAGCATCAGAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaUUCUG------GUUCGG-AGGAAGGGa 5'
            |||||      ||:||| |||||||: 
Target 5' taAAGACTGATGACAGGCCATCCTTCCTg 3'
665 - 693 154.00 -23.90
2
miRNA  3' gaUUCU-GGUUCGGAGGAAGGGa 5'
            |:|| || |  ||||||:|| 
Target 5' ccAGGATCCCA--CTCCTTTCCt 3'
286 - 306 144.00 -20.50
3
miRNA  3' gaUUC-UGG---UUC-GGAGGAAGGGa 5'
            ||| |:|   ||| ||| |||||| 
Target 5' caAAGCATCAGAAAGACCTGCTTCCCa 3'
471 - 497 136.00 -17.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31599985 5 COSMIC
COSN31614364 15 COSMIC
COSN14061023 18 COSMIC
COSN28194679 30 COSMIC
COSN14061026 43 COSMIC
COSN30162551 44 COSMIC
COSN30494657 63 COSMIC
COSN20074863 69 COSMIC
COSN30187447 78 COSMIC
COSN26997123 90 COSMIC
COSN30451759 95 COSMIC
COSN28839142 96 COSMIC
COSN31498480 107 COSMIC
COSN14896378 148 COSMIC
COSN24309459 182 COSMIC
COSN28903441 187 COSMIC
COSN31567380 214 COSMIC
COSN5002976 267 COSMIC
COSN26736249 287 COSMIC
COSN32173095 322 COSMIC
COSN26240544 457 COSMIC
COSN22442718 585 COSMIC
COSN25355380 736 COSMIC
COSN24988237 920 COSMIC
COSN17029473 970 COSMIC
COSN16807599 1021 COSMIC
COSN16808146 1033 COSMIC
COSN31571117 1099 COSMIC
COSN30167020 1153 COSMIC
COSN28660364 1260 COSMIC
COSN31531240 1333 COSMIC
COSN20098278 1384 COSMIC
COSN8925388 1562 COSMIC
COSN17591095 1581 COSMIC
COSN15705266 1677 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1400418419 5 dbSNP
rs752355979 9 dbSNP
rs551002187 10 dbSNP
rs763888537 11 dbSNP
rs936083682 18 dbSNP
rs753385751 19 dbSNP
rs1354758984 21 dbSNP
rs1232301010 22 dbSNP
rs756786426 27 dbSNP
rs1177462182 28 dbSNP
rs368809301 35 dbSNP
rs746378344 38 dbSNP
rs563238442 43 dbSNP
rs370735447 44 dbSNP
rs1486115473 45 dbSNP
rs768848684 48 dbSNP
rs530306055 53 dbSNP
rs866395718 54 dbSNP
rs867278222 55 dbSNP
rs1243789964 65 dbSNP
rs948737253 67 dbSNP
rs1046096535 70 dbSNP
rs907117180 75 dbSNP
rs993337971 77 dbSNP
rs548209101 90 dbSNP
rs1300077809 97 dbSNP
rs1214655695 101 dbSNP
rs1323165905 101 dbSNP
rs549518125 101 dbSNP
rs1433297023 102 dbSNP
rs1388419276 105 dbSNP
rs977826823 106 dbSNP
rs927696729 107 dbSNP
rs1196003688 110 dbSNP
rs1265907636 114 dbSNP
rs964759904 116 dbSNP
rs566492091 122 dbSNP
rs975764537 132 dbSNP
rs1175378118 134 dbSNP
rs939522166 143 dbSNP
rs560066382 145 dbSNP
rs534046671 147 dbSNP
rs369074939 153 dbSNP
rs373679227 162 dbSNP
rs1448619309 164 dbSNP
rs1049082718 167 dbSNP
rs1482034424 184 dbSNP
rs886426471 199 dbSNP
rs924792391 204 dbSNP
rs936136136 205 dbSNP
rs1170026281 209 dbSNP
rs940643130 210 dbSNP
rs570562828 213 dbSNP
rs1316084689 214 dbSNP
rs1398168480 215 dbSNP
rs1377188961 218 dbSNP
rs377600849 220 dbSNP
rs1462530928 224 dbSNP
rs1463103384 230 dbSNP
rs915991488 240 dbSNP
rs948771318 241 dbSNP
rs1040485305 243 dbSNP
rs538083428 245 dbSNP
rs141168901 246 dbSNP
rs574704957 248 dbSNP
rs535733768 256 dbSNP
rs1177468187 259 dbSNP
rs751000102 259 dbSNP
rs928607655 261 dbSNP
rs757829044 269 dbSNP
rs553819521 270 dbSNP
rs1216457451 275 dbSNP
rs1271936104 280 dbSNP
rs1277212835 281 dbSNP
rs1334865236 283 dbSNP
rs889731401 285 dbSNP
rs879158674 288 dbSNP
rs1011226230 294 dbSNP
rs1339114871 309 dbSNP
rs572043146 312 dbSNP
rs1022137623 317 dbSNP
rs966364803 319 dbSNP
rs977691191 322 dbSNP
rs1392239359 332 dbSNP
rs1352403338 334 dbSNP
rs1047611796 335 dbSNP
rs1409304264 352 dbSNP
rs1366064494 353 dbSNP
rs1403155275 356 dbSNP
rs1488475920 360 dbSNP
rs1164967937 362 dbSNP
rs1034742544 364 dbSNP
rs960437674 367 dbSNP
rs991044647 377 dbSNP
rs781760494 383 dbSNP
rs1005994895 385 dbSNP
rs916718313 386 dbSNP
rs1039227476 387 dbSNP
rs17188371 388 dbSNP
rs564170499 392 dbSNP
rs73827559 397 dbSNP
rs775631597 398 dbSNP
rs1030006630 406 dbSNP
rs1265291299 411 dbSNP
rs1240217159 420 dbSNP
rs1331417761 427 dbSNP
rs1286714486 430 dbSNP
rs544839784 434 dbSNP
rs901966585 435 dbSNP
rs1346276261 446 dbSNP
rs1325420294 449 dbSNP
rs1476192050 454 dbSNP
rs932040513 469 dbSNP
rs1049609099 476 dbSNP
rs889629341 477 dbSNP
rs181739021 484 dbSNP
rs530341220 487 dbSNP
rs1348036785 491 dbSNP
rs1022168611 495 dbSNP
rs1480463490 498 dbSNP
rs1289200570 501 dbSNP
rs138594030 502 dbSNP
rs370439236 510 dbSNP
rs1267290185 511 dbSNP
rs1386816828 515 dbSNP
rs1209701216 520 dbSNP
rs1397937053 522 dbSNP
rs1031915992 538 dbSNP
rs186495915 542 dbSNP
rs1228068158 567 dbSNP
rs1297134822 569 dbSNP
rs1345794273 595 dbSNP
rs957561279 601 dbSNP
rs1231170541 605 dbSNP
rs1355703073 607 dbSNP
rs1296244836 610 dbSNP
rs990332981 619 dbSNP
rs1386246558 627 dbSNP
rs1319451965 633 dbSNP
rs1470053740 634 dbSNP
rs916026364 645 dbSNP
rs1170235759 655 dbSNP
rs1477423501 660 dbSNP
rs1234583650 664 dbSNP
rs1377525588 673 dbSNP
rs1189828166 675 dbSNP
rs117097843 677 dbSNP
rs1321617070 683 dbSNP
rs1240436835 691 dbSNP
rs1263042467 695 dbSNP
rs1281021112 714 dbSNP
rs960512185 716 dbSNP
rs990965179 721 dbSNP
rs1487481103 725 dbSNP
rs1198761244 730 dbSNP
rs749489969 733 dbSNP
rs761031461 739 dbSNP
rs1344448603 761 dbSNP
rs1275233265 771 dbSNP
rs562222931 773 dbSNP
rs1230591473 775 dbSNP
rs1362761879 776 dbSNP
rs970177827 779 dbSNP
rs552279466 785 dbSNP
rs144107710 793 dbSNP
rs1331828967 794 dbSNP
rs1413377940 799 dbSNP
rs530860100 812 dbSNP
rs1169773081 814 dbSNP
rs549983573 815 dbSNP
rs940919009 821 dbSNP
rs976103532 829 dbSNP
rs1388867842 833 dbSNP
rs1188265037 836 dbSNP
rs551048469 843 dbSNP
rs1047663960 849 dbSNP
rs1185745149 852 dbSNP
rs1419782335 855 dbSNP
rs570549384 856 dbSNP
rs1252714586 867 dbSNP
rs1207385993 868 dbSNP
rs535769888 875 dbSNP
rs914620669 897 dbSNP
rs1228635719 900 dbSNP
rs1282043356 901 dbSNP
rs533143578 903 dbSNP
rs79867369 908 dbSNP
rs867758164 918 dbSNP
rs902480217 920 dbSNP
rs900299351 923 dbSNP
rs1406295078 924 dbSNP
rs1416478107 930 dbSNP
rs999382440 933 dbSNP
rs1161675097 934 dbSNP
rs997288339 946 dbSNP
rs1056087252 950 dbSNP
rs1184374348 951 dbSNP
rs896154234 952 dbSNP
rs1416293108 961 dbSNP
rs999184234 962 dbSNP
rs1031968459 965 dbSNP
rs1329354125 969 dbSNP
rs957613661 983 dbSNP
rs1012209771 984 dbSNP
rs1011891573 987 dbSNP
rs1300532061 988 dbSNP
rs371530678 992 dbSNP
rs753976628 992 dbSNP
rs546521017 1001 dbSNP
rs1352127763 1003 dbSNP
rs78236047 1018 dbSNP
rs557468066 1029 dbSNP
rs1461267172 1035 dbSNP
rs866217522 1041 dbSNP
rs1239860789 1047 dbSNP
rs1281555483 1048 dbSNP
rs928712223 1051 dbSNP
rs779580206 1057 dbSNP
rs1015080968 1059 dbSNP
rs1208236035 1067 dbSNP
rs983416229 1072 dbSNP
rs1191703262 1073 dbSNP
rs1478932885 1096 dbSNP
rs759339625 1097 dbSNP
rs1220496124 1101 dbSNP
rs764962902 1103 dbSNP
rs1269601959 1106 dbSNP
rs2176995 1107 dbSNP
rs1327856653 1111 dbSNP
rs1301274814 1115 dbSNP
rs953504169 1118 dbSNP
rs1370295279 1124 dbSNP
rs188416277 1128 dbSNP
rs556735994 1133 dbSNP
rs897942181 1136 dbSNP
rs1389905291 1137 dbSNP
rs947473627 1149 dbSNP
rs933136674 1150 dbSNP
rs1051545886 1156 dbSNP
rs1344840865 1163 dbSNP
rs1176814319 1172 dbSNP
rs574643733 1174 dbSNP
rs1422930064 1186 dbSNP
rs1415988724 1192 dbSNP
rs1449828919 1202 dbSNP
rs1173451798 1215 dbSNP
rs1358225969 1217 dbSNP
rs139904536 1227 dbSNP
rs1464117265 1228 dbSNP
rs1256249031 1234 dbSNP
rs1211566051 1237 dbSNP
rs923764896 1243 dbSNP
rs935027957 1245 dbSNP
rs560453548 1247 dbSNP
rs796251539 1249 dbSNP
rs1300194665 1255 dbSNP
rs1446749055 1257 dbSNP
rs3772105 1260 dbSNP
rs1056328912 1262 dbSNP
rs896364712 1269 dbSNP
rs1467626225 1275 dbSNP
rs1012360046 1280 dbSNP
rs576938762 1281 dbSNP
rs1023623144 1283 dbSNP
rs568937660 1285 dbSNP
rs1430250847 1287 dbSNP
rs77916914 1293 dbSNP
rs545785031 1299 dbSNP
rs1166430601 1301 dbSNP
rs1427734362 1302 dbSNP
rs779593159 1302 dbSNP
rs887545703 1307 dbSNP
rs756714787 1312 dbSNP
rs1183288534 1314 dbSNP
rs1014651381 1320 dbSNP
rs1481982910 1322 dbSNP
rs144752655 1332 dbSNP
rs962221160 1340 dbSNP
rs768139320 1348 dbSNP
rs1205260613 1352 dbSNP
rs1256286328 1352 dbSNP
rs1277428031 1357 dbSNP
rs1439376411 1380 dbSNP
rs180928448 1383 dbSNP
rs35006991 1383 dbSNP
rs755893131 1383 dbSNP
rs1398072476 1388 dbSNP
rs1377248025 1394 dbSNP
rs983467115 1398 dbSNP
rs1410539796 1400 dbSNP
rs1016231878 1407 dbSNP
rs1031004966 1408 dbSNP
rs1456357841 1411 dbSNP
rs148506351 1414 dbSNP
rs756581707 1424 dbSNP
rs1166467401 1426 dbSNP
rs986577987 1434 dbSNP
rs1421623306 1435 dbSNP
rs144239400 1436 dbSNP
rs557877537 1440 dbSNP
rs201744465 1441 dbSNP
rs1428803267 1446 dbSNP
rs987303343 1447 dbSNP
rs1172159360 1463 dbSNP
rs923734665 1468 dbSNP
rs924676157 1477 dbSNP
rs935169035 1487 dbSNP
rs1292940562 1496 dbSNP
rs935078909 1501 dbSNP
rs991971889 1508 dbSNP
rs1464672323 1511 dbSNP
rs1306093908 1519 dbSNP
rs917866686 1521 dbSNP
rs1391369593 1524 dbSNP
rs947978124 1531 dbSNP
rs1045157455 1534 dbSNP
rs1053506529 1537 dbSNP
rs893493956 1539 dbSNP
rs780610042 1541 dbSNP
rs1044687949 1559 dbSNP
rs906107402 1567 dbSNP
rs146548620 1572 dbSNP
rs1268689974 1580 dbSNP
rs1362893946 1585 dbSNP
rs184901434 1589 dbSNP
rs1467447443 1595 dbSNP
rs1272755820 1599 dbSNP
rs1209658564 1600 dbSNP
rs1331318721 1600 dbSNP
rs1286461403 1606 dbSNP
rs1036114857 1611 dbSNP
rs897543015 1613 dbSNP
rs997716650 1615 dbSNP
rs1384835845 1618 dbSNP
rs1030498963 1622 dbSNP
rs754133742 1627 dbSNP
rs1320801581 1629 dbSNP
rs577741663 1632 dbSNP
rs1007798701 1635 dbSNP
rs755288633 1637 dbSNP
rs1157428638 1639 dbSNP
rs1273736581 1643 dbSNP
rs1004942339 1650 dbSNP
rs1022267699 1652 dbSNP
rs370583451 1654 dbSNP
rs566027953 1661 dbSNP
rs1219083059 1697 dbSNP
rs977354244 1707 dbSNP
rs190933203 1711 dbSNP
rs1031725698 1719 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gauucuggUUC-GGAGGAAGGGa 5'
                  ||| ||| |||||| 
Target 5' ------gaAAGACCUGCUUCCC- 3'
1 - 16
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset GSM4903830
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_b
Location of target site NM_003149 | 3UTR | UGCUUCCCAGCCCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000273183.3 | 3UTR | GAAAGACCUGCUUCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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