pre-miRNA Information
pre-miRNA hsa-mir-4778   
Genomic Coordinates chr2: 66358249 - 66358328
Description Homo sapiens miR-4778 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4778-3p
Sequence 51| UCUUCUUCCUUUGCAGAGUUGA |72
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs936001904 2 dbSNP
rs925922703 3 dbSNP
rs184768286 8 dbSNP
rs1249073833 10 dbSNP
rs977504360 13 dbSNP
rs192300002 18 dbSNP
Putative Targets

Gene Information
Gene Symbol NPTX2   
Synonyms NARP, NP-II, NP2
Description neuronal pentraxin 2
Transcript NM_002523   
Expression
Putative miRNA Targets on NPTX2
3'UTR of NPTX2
(miRNA target sites are highlighted)
>NPTX2|NM_002523|3'UTR
   1 CCGCCTTCTCCTCTGTCCAGGAGGCCGGGATCAGGCTGTTGCCATGGAAGTTCAGGGCCATAGACTGCCCCACTTAAACT
  81 CTTGTCAGTCTGGGCTCAGGGTTCCCAGAGCTCATTCCCCAGGAATCTCTAAGACCAGGGCTGGGGCAGTGTCTGTCACT
 161 GGCTTGTTTGTTCCCTACCAATATTCTGTTGCTGTTTGAAGTAGTGCCAGGGTCCCCTGGGAAGATGCCCCCAAGACACC
 241 TGCCCCAAGTGGGTGGATATCTGCCTTCCTGCTGCAAGTGGAGGCAGGTCCAGCAGCCCCTCTTCAGAGCCCCTGTAAAT
 321 GCTATCGCAGCCTGAGTCCTGCCGCCTTCCAGTTCCTTGGTGTCCCGTGCACCCCTTCTGTCTGTCCCCTTTCATGGCTG
 401 TGCAGCCGTCCCGCTGGAGTGGCCATGTCCCTTGTGCATTGAGTGCATCCCCGCTGGTGACTAAGCTCGCAGCAAGCGGC
 481 TACCCCCCGATCTGCAAAAGGGCCTCTCCCTTTGTGTTCTATACATTGTGAATCTTCCCGTCTGAAGAACGCCCAGCCTG
 561 CCCAGACAAAGCCCCGCCTTCCCCAAAGCAGAGGGGCTGTCTGTGTCTCCAGAAAGGGGACATCGGGGGGGAGGGGGGCT
 641 CAGAAAGGAGAAGGGCTGTGATCTCCGGTCCCTTCCCCCATCATCCTTCCTTAGACTGATGCTTTGACTGAATCATCACT
 721 AGCTATGGCATTAAAAGGCCTCTCTTCTCATCTGGTGCCAAAGGTTCCGTTGCAGCTTTTTACAACCATCCGGTGTGGTT
 801 TGGAGGATTTGTTTTTTTTTTTTCCCAACAGAAAAGAACAGCCATTAGAAGAAGGCTCCCATTTTCTGATGTTCCGCCCC
 881 ACTGTGAAGAGTGTGCTCGTTTTAAATTCATGTTGATTCTTGTAAGCACTGGACTGTCTTCATCAAGTATTTCCCTACAG
 961 AACTCCTCAAGAAAACAGAGATCATTTGGCTAGAGATTGTCTGAGTGACTCCAAGCTACTCACTGTATTGGACGGGAGTA
1041 GTAATTTATTTTAAAGATAAAGTGACTAAGTGGGGAAATTTATAAAGCTAAATATTATATATTTTATTTTTCATACATGT
1121 TTGAAGTGCAAATCTGTGGATATTCCATTTGTAGGACCAAGTCGACATGCCCATCCTGACATTGTATGCTACGAGAACTC
1201 TTCTGATGATGGAATTTCGATTAAAGTGCACTGAAAGATGAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agUUGAGACGUUUCCUUCUUCu 5'
            ::||| | ||| |:||||| 
Target 5' ggGGCTCAG-AAA-GGAGAAGg 3'
635 - 654 142.00 -14.50
2
miRNA  3' aguugagacGUUUCCUUCUUCu 5'
                   ||   ||||||| 
Target 5' aagaacagcCATTAGAAGAAGg 3'
834 - 855 141.00 -10.70
3
miRNA  3' agUUGAGACGUUUCCUUCUUcu 5'
            | ||:  |:   ||||||  
Target 5' gaATCTTCCCGTCTGAAGAAcg 3'
530 - 551 124.00 -5.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19130031 4 COSMIC
COSN31545479 9 COSMIC
COSN20076218 24 COSMIC
COSN30121193 42 COSMIC
COSN23697418 64 COSMIC
COSN31534159 64 COSMIC
COSN28775615 108 COSMIC
COSN22401084 245 COSMIC
COSN21557840 253 COSMIC
COSN24737453 435 COSMIC
COSN15926370 454 COSMIC
COSN31555677 555 COSMIC
COSN31591766 573 COSMIC
COSN31602872 632 COSMIC
COSN31565341 737 COSMIC
COSN9775317 738 COSMIC
COSN31532992 758 COSMIC
COSN505766 812 COSMIC
COSN20104485 824 COSMIC
COSN27234888 824 COSMIC
COSN30159420 863 COSMIC
COSN31572107 865 COSMIC
COSN31487624 869 COSMIC
COSN8517947 877 COSMIC
COSN8517948 1063 COSMIC
COSN31529567 1076 COSMIC
COSN31567625 1135 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs867368758 2 dbSNP
rs1054753375 3 dbSNP
rs201609959 4 dbSNP
rs775407872 5 dbSNP
rs1272384833 7 dbSNP
rs761712089 8 dbSNP
rs1227752701 9 dbSNP
rs949607792 11 dbSNP
rs1313515621 12 dbSNP
rs760593814 15 dbSNP
rs950326789 16 dbSNP
rs764059343 17 dbSNP
rs1389335803 20 dbSNP
rs769767222 27 dbSNP
rs763114650 28 dbSNP
rs1046609602 35 dbSNP
rs766404726 45 dbSNP
rs1158145990 48 dbSNP
rs1235602679 51 dbSNP
rs1471758510 59 dbSNP
rs1431693750 63 dbSNP
rs1199793753 64 dbSNP
rs141715764 70 dbSNP
rs1451112166 91 dbSNP
rs940774718 98 dbSNP
rs994073916 105 dbSNP
rs1465737615 106 dbSNP
rs1038163167 109 dbSNP
rs1226917181 111 dbSNP
rs887892553 119 dbSNP
rs1276279645 126 dbSNP
rs1221746478 130 dbSNP
rs899235358 133 dbSNP
rs1233437312 136 dbSNP
rs189247607 139 dbSNP
rs1017639121 143 dbSNP
rs966050733 150 dbSNP
rs11978703 159 dbSNP
rs111533375 167 dbSNP
rs80287049 171 dbSNP
rs984570627 174 dbSNP
rs1407981948 185 dbSNP
rs1173387975 202 dbSNP
rs1008726636 213 dbSNP
rs1477812476 214 dbSNP
rs1020090689 221 dbSNP
rs1484000394 224 dbSNP
rs1376057618 231 dbSNP
rs1182923002 238 dbSNP
rs966616240 243 dbSNP
rs1207342132 246 dbSNP
rs763301633 253 dbSNP
rs1279712981 254 dbSNP
rs1200735768 258 dbSNP
rs1343848785 262 dbSNP
rs967153999 265 dbSNP
rs1000018280 281 dbSNP
rs1033197604 291 dbSNP
rs958479130 292 dbSNP
rs529954289 304 dbSNP
rs1471708389 307 dbSNP
rs916884833 310 dbSNP
rs1365229359 313 dbSNP
rs937791700 314 dbSNP
rs1414856489 324 dbSNP
rs990512923 328 dbSNP
rs1405126079 335 dbSNP
rs138630221 344 dbSNP
rs982338259 345 dbSNP
rs908055999 348 dbSNP
rs796066020 356 dbSNP
rs1430519928 357 dbSNP
rs1389560897 359 dbSNP
rs898110810 361 dbSNP
rs1349303347 367 dbSNP
rs940869747 368 dbSNP
rs1037856450 372 dbSNP
rs929566974 375 dbSNP
rs569713463 385 dbSNP
rs932079560 388 dbSNP
rs1206811261 389 dbSNP
rs1342265880 390 dbSNP
rs1273262915 395 dbSNP
rs887925367 398 dbSNP
rs114251033 401 dbSNP
rs890430163 406 dbSNP
rs558545661 408 dbSNP
rs1310090702 409 dbSNP
rs997522106 411 dbSNP
rs1370094340 412 dbSNP
rs1166792547 413 dbSNP
rs1407615783 442 dbSNP
rs1020953769 444 dbSNP
rs1041644723 450 dbSNP
rs369029791 453 dbSNP
rs2301130 455 dbSNP
rs1000474776 456 dbSNP
rs1183919823 458 dbSNP
rs1032836782 467 dbSNP
rs534683819 469 dbSNP
rs1202378549 470 dbSNP
rs1322946339 471 dbSNP
rs1290544620 472 dbSNP
rs561019385 478 dbSNP
rs1032614280 479 dbSNP
rs1289969507 483 dbSNP
rs959218268 484 dbSNP
rs1012633514 487 dbSNP
rs181890605 489 dbSNP
rs574589038 490 dbSNP
rs1323488645 493 dbSNP
rs1350503914 493 dbSNP
rs971027497 496 dbSNP
rs1482101052 510 dbSNP
rs970447546 511 dbSNP
rs1212404146 517 dbSNP
rs1160318542 522 dbSNP
rs982424751 525 dbSNP
rs1015211791 526 dbSNP
rs962310144 531 dbSNP
rs1410794944 533 dbSNP
rs1175075656 538 dbSNP
rs974016925 540 dbSNP
rs535508725 541 dbSNP
rs932075005 544 dbSNP
rs1180423269 551 dbSNP
rs185580957 566 dbSNP
rs1228758065 573 dbSNP
rs565400359 576 dbSNP
rs944739437 577 dbSNP
rs1221091870 580 dbSNP
rs943524128 584 dbSNP
rs1369309503 591 dbSNP
rs1274326318 594 dbSNP
rs1407713337 597 dbSNP
rs1321749278 600 dbSNP
rs1039183131 605 dbSNP
rs1041694029 621 dbSNP
rs1386823016 623 dbSNP
rs1156510055 624 dbSNP
rs901969778 625 dbSNP
rs903148500 625 dbSNP
rs1042812055 626 dbSNP
rs575713171 627 dbSNP
rs546497865 628 dbSNP
rs1217565466 632 dbSNP
rs1367390672 633 dbSNP
rs1298995691 634 dbSNP
rs894279932 635 dbSNP
rs1367047704 636 dbSNP
rs970480073 637 dbSNP
rs1013098649 643 dbSNP
rs1359359271 645 dbSNP
rs532744635 648 dbSNP
rs1174859367 649 dbSNP
rs1432364718 654 dbSNP
rs1391410414 656 dbSNP
rs1189158372 664 dbSNP
rs1024083415 667 dbSNP
rs2642895 668 dbSNP
rs765857764 672 dbSNP
rs984157766 673 dbSNP
rs1208916267 676 dbSNP
rs1344424526 679 dbSNP
rs909468066 681 dbSNP
rs1228396298 690 dbSNP
rs1279437132 715 dbSNP
rs576946984 718 dbSNP
rs1442008363 720 dbSNP
rs1315335916 724 dbSNP
rs1201976701 728 dbSNP
rs1250188383 739 dbSNP
rs1015264047 745 dbSNP
rs943601123 751 dbSNP
rs1301904958 764 dbSNP
rs772680823 769 dbSNP
rs750998888 770 dbSNP
rs1388790555 777 dbSNP
rs1429081081 781 dbSNP
rs1028258697 782 dbSNP
rs1424178656 784 dbSNP
rs756556649 792 dbSNP
rs376722500 793 dbSNP
rs1484156659 794 dbSNP
rs705315 796 dbSNP
rs1267790128 808 dbSNP
rs1479671560 808 dbSNP
rs374519752 808 dbSNP
rs78011165 808 dbSNP
rs1231149496 812 dbSNP
rs1246085525 812 dbSNP
rs200021765 812 dbSNP
rs879150906 812 dbSNP
rs944791572 813 dbSNP
rs1173774870 814 dbSNP
rs1053710923 815 dbSNP
rs977396590 818 dbSNP
rs924601770 821 dbSNP
rs201899324 824 dbSNP
rs1413448892 825 dbSNP
rs1393605887 827 dbSNP
rs1334256442 832 dbSNP
rs935929507 837 dbSNP
rs138163120 839 dbSNP
rs775748787 842 dbSNP
rs1435535158 845 dbSNP
rs189354978 847 dbSNP
rs894365155 856 dbSNP
rs948608588 857 dbSNP
rs1024788010 862 dbSNP
rs576186224 863 dbSNP
rs1436158876 865 dbSNP
rs906989713 866 dbSNP
rs1235355886 869 dbSNP
rs141829146 872 dbSNP
rs548627936 876 dbSNP
rs898129421 877 dbSNP
rs75755515 890 dbSNP
rs1210990907 893 dbSNP
rs767581587 899 dbSNP
rs953751971 900 dbSNP
rs952528108 909 dbSNP
rs180938206 911 dbSNP
rs1333536350 919 dbSNP
rs1302757812 929 dbSNP
rs1387320191 945 dbSNP
rs1389897409 957 dbSNP
rs750661201 962 dbSNP
rs534954729 963 dbSNP
rs770538522 966 dbSNP
rs553312078 972 dbSNP
rs1007722247 977 dbSNP
rs796505987 977 dbSNP
rs1019032505 978 dbSNP
rs1479815258 985 dbSNP
rs966107996 988 dbSNP
rs1173717237 993 dbSNP
rs1433169642 995 dbSNP
rs1251692281 997 dbSNP
rs570646483 998 dbSNP
rs1457453396 1010 dbSNP
rs571403731 1012 dbSNP
rs780252539 1015 dbSNP
rs924625013 1019 dbSNP
rs974975931 1024 dbSNP
rs923495902 1025 dbSNP
rs957416651 1026 dbSNP
rs990543038 1027 dbSNP
rs1382548375 1028 dbSNP
rs534743066 1032 dbSNP
rs538847580 1034 dbSNP
rs546592498 1035 dbSNP
rs978633139 1038 dbSNP
rs568073396 1045 dbSNP
rs1290309980 1052 dbSNP
rs1045591677 1060 dbSNP
rs928416303 1063 dbSNP
rs535567479 1066 dbSNP
rs557145548 1071 dbSNP
rs1228053313 1093 dbSNP
rs1249663381 1098 dbSNP
rs1259229301 1103 dbSNP
rs1358878110 1110 dbSNP
rs1463454893 1113 dbSNP
rs1404596651 1116 dbSNP
rs774773803 1118 dbSNP
rs1036808852 1140 dbSNP
rs898228648 1146 dbSNP
rs575820781 1154 dbSNP
rs139506365 1164 dbSNP
rs1049860820 1165 dbSNP
rs895130102 1170 dbSNP
rs1196573623 1171 dbSNP
rs948033465 1177 dbSNP
rs889379783 1180 dbSNP
rs780551460 1181 dbSNP
rs142901812 1183 dbSNP
rs1180608907 1187 dbSNP
rs543599109 1191 dbSNP
rs998961141 1193 dbSNP
rs1031784273 1194 dbSNP
rs1346550366 1205 dbSNP
rs1277541290 1207 dbSNP
rs186230098 1220 dbSNP
rs1269434144 1223 dbSNP
rs559409597 1233 dbSNP
rs990205336 1241 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aguugagacguuucCUUCUUCu 5'
                        ||||||| 
Target 5' -------------aGAAGAAGg 3'
1 - 9
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000265634.3 | 3UTR | AGAAGAAGGCUCCCAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
169 hsa-miR-4778-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT199338 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT203028 MAP3K2 mitogen-activated protein kinase kinase kinase 2 2 2
MIRT260646 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT336468 SRP9 signal recognition particle 9 2 2
MIRT389212 SERTAD2 SERTA domain containing 2 2 2
MIRT441814 TENM1 teneurin transmembrane protein 1 2 2
MIRT444029 GREM1 gremlin 1, DAN family BMP antagonist 2 4
MIRT454171 HIST1H2BK histone cluster 1 H2B family member k 2 2
MIRT469663 RABEPK Rab9 effector protein with kelch motifs 2 2
MIRT495579 PLEKHA8 pleckstrin homology domain containing A8 2 2
MIRT498340 PRELID2 PRELI domain containing 2 2 2
MIRT498696 LYRM2 LYR motif containing 2 2 6
MIRT504156 OPN5 opsin 5 2 4
MIRT506321 OTUD4 OTU deubiquitinase 4 2 4
MIRT507608 DCAF7 DDB1 and CUL4 associated factor 7 2 2
MIRT525431 PROX2 prospero homeobox 2 2 2
MIRT526973 PAX7 paired box 7 2 2
MIRT527814 TMEM74B transmembrane protein 74B 2 2
MIRT527960 MTAP methylthioadenosine phosphorylase 2 2
MIRT528083 NOL9 nucleolar protein 9 2 2
MIRT528480 STAMBPL1 STAM binding protein like 1 2 2
MIRT528947 PNMA5 paraneoplastic Ma antigen family member 5 2 2
MIRT530687 C8orf46 chromosome 8 open reading frame 46 2 2
MIRT531733 SLC2A9 solute carrier family 2 member 9 2 2
MIRT532445 PLGRKT plasminogen receptor with a C-terminal lysine 2 2
MIRT533331 UNK unkempt family zinc finger 2 2
MIRT534205 SLC38A9 solute carrier family 38 member 9 2 2
MIRT534322 SHISA6 shisa family member 6 2 2
MIRT535197 PLCL1 phospholipase C like 1 (inactive) 2 2
MIRT538076 DIAPH2 diaphanous related formin 2 2 2
MIRT539250 ANKRD50 ankyrin repeat domain 50 2 2
MIRT548733 CREBRF CREB3 regulatory factor 2 2
MIRT556406 LRRC8B leucine rich repeat containing 8 VRAC subunit B 2 2
MIRT559576 AP1AR adaptor related protein complex 1 associated regulatory protein 2 2
MIRT567661 ERGIC2 ERGIC and golgi 2 2 2
MIRT572750 FAM204A family with sequence similarity 204 member A 2 2
MIRT609355 ZNF664 zinc finger protein 664 2 2
MIRT611194 TMEM105 transmembrane protein 105 2 2
MIRT611545 BIRC5 baculoviral IAP repeat containing 5 2 4
MIRT611690 NODAL nodal growth differentiation factor 2 2
MIRT611810 FCRL4 Fc receptor like 4 2 2
MIRT612746 MYOCD myocardin 2 2
MIRT614177 FAM53B family with sequence similarity 53 member B 2 2
MIRT614431 TAZ tafazzin 2 2
MIRT614586 SDC1 syndecan 1 2 2
MIRT615547 TNFSF15 TNF superfamily member 15 2 2
MIRT615872 BRD3 bromodomain containing 3 2 2
MIRT615970 ASCL1 achaete-scute family bHLH transcription factor 1 2 2
MIRT616024 PRRG4 proline rich and Gla domain 4 2 4
MIRT616242 NFIC nuclear factor I C 2 2
MIRT616282 HMGB1 high mobility group box 1 2 2
MIRT616674 PRR15 proline rich 15 2 2
MIRT618302 COL4A4 collagen type IV alpha 4 chain 2 2
MIRT618657 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT618754 SLC38A5 solute carrier family 38 member 5 2 2
MIRT619505 TXLNB taxilin beta 2 2
MIRT619545 GABRG2 gamma-aminobutyric acid type A receptor gamma2 subunit 2 2
MIRT619605 MKKS McKusick-Kaufman syndrome 2 2
MIRT619804 CDC42EP4 CDC42 effector protein 4 2 2
MIRT619923 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT620442 SEMA3E semaphorin 3E 2 4
MIRT620730 CCL16 C-C motif chemokine ligand 16 2 2
MIRT625345 TAPBP TAP binding protein 2 2
MIRT627510 ST8SIA3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 2 2
MIRT632584 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636901 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT637873 UTP6 UTP6, small subunit processome component 2 2
MIRT639011 ABI2 abl interactor 2 2 2
MIRT639054 FPR1 formyl peptide receptor 1 2 2
MIRT639085 ADCYAP1 adenylate cyclase activating polypeptide 1 2 2
MIRT639589 RGS5 regulator of G protein signaling 5 2 2
MIRT639718 NPRL3 NPR3 like, GATOR1 complex subunit 2 2
MIRT639904 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT640392 ZNF785 zinc finger protein 785 2 2
MIRT640786 GRIK3 glutamate ionotropic receptor kainate type subunit 3 2 2
MIRT641290 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT641442 PELO pelota mRNA surveillance and ribosome rescue factor 2 2
MIRT642426 STAT3 signal transducer and activator of transcription 3 2 2
MIRT642682 KRT74 keratin 74 2 2
MIRT643362 TRIM10 tripartite motif containing 10 2 2
MIRT643982 DUSP28 dual specificity phosphatase 28 2 2
MIRT644466 ZNF747 zinc finger protein 747 2 2
MIRT644561 SPOP speckle type BTB/POZ protein 2 2
MIRT645748 FAM213A family with sequence similarity 213 member A 2 2
MIRT646737 FADS1 fatty acid desaturase 1 2 2
MIRT647446 SIX6 SIX homeobox 6 2 2
MIRT648317 SCNN1G sodium channel epithelial 1 gamma subunit 2 2
MIRT649327 POLG DNA polymerase gamma, catalytic subunit 2 2
MIRT649453 WDR70 WD repeat domain 70 2 2
MIRT650066 CCDC134 coiled-coil domain containing 134 2 2
MIRT650156 JUND JunD proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT650317 TMX4 thioredoxin related transmembrane protein 4 2 2
MIRT650429 BBS9 Bardet-Biedl syndrome 9 2 2
MIRT651325 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT651843 USP13 ubiquitin specific peptidase 13 2 2
MIRT652532 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT652816 TARDBP TAR DNA binding protein 2 2
MIRT652971 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT653466 SLC5A12 solute carrier family 5 member 12 2 4
MIRT653568 SLC35B3 solute carrier family 35 member B3 2 2
MIRT655678 NUMBL NUMB like, endocytic adaptor protein 2 2
MIRT656785 KPNA4 karyopherin subunit alpha 4 2 2
MIRT656798 KNTC1 kinetochore associated 1 2 2
MIRT656988 KDM5A lysine demethylase 5A 2 2
MIRT657292 HOXB5 homeobox B5 2 2
MIRT657497 HBEGF heparin binding EGF like growth factor 2 4
MIRT658012 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT658146 STXBP2 syntaxin binding protein 2 2 2
MIRT658259 FAXC failed axon connections homolog 2 2
MIRT659051 DGKH diacylglycerol kinase eta 2 2
MIRT659171 DCTN3 dynactin subunit 3 2 2
MIRT659936 CACHD1 cache domain containing 1 2 2
MIRT660079 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT660167 BNIP3L BCL2 interacting protein 3 like 2 2
MIRT660292 BICC1 BicC family RNA binding protein 1 2 2
MIRT660317 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT660340 BCAT1 branched chain amino acid transaminase 1 2 2
MIRT660447 ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 2 2
MIRT661634 UGT2B28 UDP glucuronosyltransferase family 2 member B28 2 2
MIRT662438 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664202 TBCA tubulin folding cofactor A 2 2
MIRT666436 SH2B3 SH2B adaptor protein 3 2 2
MIRT666666 RBM47 RNA binding motif protein 47 2 4
MIRT669253 C4orf36 chromosome 4 open reading frame 36 2 2
MIRT669502 ARL3 ADP ribosylation factor like GTPase 3 2 2
MIRT693912 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT700435 PURB purine rich element binding protein B 2 2
MIRT702857 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT708857 TMSB4X thymosin beta 4, X-linked 2 2
MIRT709030 KBTBD13 kelch repeat and BTB domain containing 13 2 2
MIRT709609 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT709810 AR androgen receptor 2 2
MIRT709872 A1CF APOBEC1 complementation factor 2 2
MIRT710208 ENAH ENAH, actin regulator 2 2
MIRT710964 CMKLR1 chemerin chemokine-like receptor 1 2 2
MIRT711173 EMCN endomucin 2 2
MIRT711219 RETSAT retinol saturase 2 2
MIRT711345 FMNL2 formin like 2 2 2
MIRT711441 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT711631 PEBP1 phosphatidylethanolamine binding protein 1 2 2
MIRT711823 MAPK8IP3 mitogen-activated protein kinase 8 interacting protein 3 2 2
MIRT712164 SURF4 surfeit 4 2 2
MIRT712632 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT713692 CYB5R4 cytochrome b5 reductase 4 2 2
MIRT714906 CHMP3 charged multivesicular body protein 3 2 2
MIRT715161 FIG4 FIG4 phosphoinositide 5-phosphatase 2 2
MIRT715430 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT715660 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT715968 FADS3 fatty acid desaturase 3 2 2
MIRT716203 TYW3 tRNA-yW synthesizing protein 3 homolog 2 2
MIRT716234 SRSF12 serine and arginine rich splicing factor 12 2 2
MIRT716251 PALM2 paralemmin 2 2 2
MIRT716375 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT716490 PHACTR2 phosphatase and actin regulator 2 2 2
MIRT716744 APOL6 apolipoprotein L6 2 2
MIRT717624 AGPAT4 1-acylglycerol-3-phosphate O-acyltransferase 4 2 2
MIRT718480 TMEM151A transmembrane protein 151A 2 2
MIRT718805 PRKCB protein kinase C beta 2 2
MIRT719276 SETD7 SET domain containing lysine methyltransferase 7 2 2
MIRT719432 NPTX2 neuronal pentraxin 2 2 2
MIRT721011 ZNF619 zinc finger protein 619 2 2
MIRT721819 HEATR5A HEAT repeat containing 5A 2 2
MIRT721997 CLLU1OS chronic lymphocytic leukemia up-regulated 1 opposite strand 2 2
MIRT723143 METTL24 methyltransferase like 24 2 2
MIRT723213 PIP5K1C phosphatidylinositol-4-phosphate 5-kinase type 1 gamma 2 2
MIRT723427 MC2R melanocortin 2 receptor 2 2
MIRT723436 ADI1 acireductone dioxygenase 1 2 2
MIRT723542 PAGR1 PAXIP1 associated glutamate rich protein 1 2 2
MIRT724474 MMD monocyte to macrophage differentiation associated 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4778-3p Platinum 23939 sensitive tissue (non-small cell lung cancer)
hsa-miR-4778-3p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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