pre-miRNA Information
pre-miRNA hsa-mir-6511b-1   
Genomic Coordinates chr16: 2106669 - 2106753
Description Homo sapiens miR-6511b-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-6511b-2   
Genomic Coordinates chr16: 15134075 - 15134145
Description Homo sapiens miR-6511b-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6511b-3p
Sequence 53| CCUCACCACCCCUUCUGCCUGCA |75
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
993639 5 ClinVar
1196654 15 ClinVar
256998 15 ClinVar
433980 16 ClinVar
586295 18 ClinVar
433979 19 ClinVar
COSM3948368 17 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs769351879 1 dbSNP
rs1001283562 2 dbSNP
rs763611191 3 dbSNP
rs1465530682 4 dbSNP
rs1227492873 4 dbSNP
rs745502224 5 dbSNP
rs551972801 6 dbSNP
rs538162642 6 dbSNP
rs751438298 7 dbSNP
rs1285683081 7 dbSNP
rs1340898267 8 dbSNP
rs4018164 9 dbSNP
rs370568831 9 dbSNP
rs1180919709 10 dbSNP
rs1339482497 10 dbSNP
rs758216756 11 dbSNP
rs1323026290 11 dbSNP
rs1239445091 12 dbSNP
rs1310601001 12 dbSNP
rs1431093969 13 dbSNP
rs752690118 15 dbSNP
rs1371790714 15 dbSNP
rs746463189 16 dbSNP
rs1209415208 17 dbSNP
rs761022804 17 dbSNP
rs1242038386 17 dbSNP
rs370411414 18 dbSNP
rs759723934 19 dbSNP
rs1428318191 19 dbSNP
rs1416441031 20 dbSNP
rs754040914 21 dbSNP
rs776062795 21 dbSNP
rs1273686335 22 dbSNP
rs1182772456 22 dbSNP
rs1472619959 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SRF   
Synonyms MCM1
Description serum response factor
Transcript NM_003131   
Expression
Putative miRNA Targets on SRF
3'UTR of SRF
(miRNA target sites are highlighted)
>SRF|NM_003131|3'UTR
   1 TCCGCCCGCCGCCCTGGACAGATGGCCCAAGGGATGGCACCACTTATTTATTGTTGCCTTTTCACGTTTTCTTTACACAC
  81 ACGTTGACGGGCCGCAGGAGGGAGGCGGGGAGGAGGAACGGGCAGCCACAGGACTGAGCCCTCTCACTCCAGCCAAAGAA
 161 ATGGGCCTGCCTGCCTCCACCCGTCCTCCCTCAGCCTCCCCTTCTTCCCGCCCCACCTCCCATTTCTGTTGCTGGAGGGG
 241 CTGTCCTCCTTCCTGGGACCCCCTCGCCAGCTTGGCTCGATGTTTGCCATGAGTATTAGCTTACCCAATGGGACCGTGCC
 321 CCACCTCCCCACACACAGGCCTTCTGTGGGGCTGGGCACCGTGTCCTCCTCTGAGGAAGCAGTTGGGGCCCTCTTGCCAG
 401 CCTCCTTGCTGACCCCAGGTCAGCCCTGTGTCTGTCACAGGCTGGGTCAAAAGAGCCCTGGCTCTGCCCCTCAGGGGGCC
 481 AGCTGGGGAGATGGGGGCTTCTTCCTCACACTGCTGTCCTCTCCCCCTTCAGCTCCTGAGTAGCTGGGCCTGTGCACTGG
 561 GCAGGTTCCTGGGGCCGCCTGCCCTGCCTTGCCGCTCCCCTTGGACCTCCAGGGGCTCCTGGGTTGGAGGGAACCACCAG
 641 CGTTCCCTTCTCCCCCTTGTCTTCCCCCCTCTCCTCCCAGCTGCTTTACTTAAAGTTGATTTTGAACTTTTTATTTGAGG
 721 AGACGAAGTGAAAACAAATCTATAAATATATATTTTTAAAATATTTAACTTTTTTTTATGGCGTTTTTCTCGTCCCCCTC
 801 CCTGCCCAAACTCCCCTTCCCTGGGGAGCCCTCAGGCTCCCCAGAACTGGCTGGGCCCCTGGGGACAGAGCCACCCCATG
 881 AGCTCGGGGTCCACCAGTGTGTGGGGGAGATTCTGGGTTTGCCCAGTCCTGGGTTGTTTCCAGGAGAAAGCCGGGGGAGG
 961 GGCCCTCAGGCCATTCCCCAACGGGGTGGGGAGGGTGACCCACAGCTCTGGGCCTCTTTTTGCCCTTTAGGGCTGTTGCT
1041 AGGGAGAGGGAAGAGGGAGACCAAATGTCGGGGTTGGGGTGGGAGGGCGTCAGGCAGAGGCAACTGACTTCATTTGTGCC
1121 ACACGCATGGGCATTGCAGCCTTGCGCTGTCCCAGGCATGCAGCTGCCTGGGGCCCAAGTTGCAGTGAGCAGGGTGGGGT
1201 CTGGGAGGGGGTGAGAGGCAGGAATGGGGGTCAGAAGAAGTGGGAGCAGCTTCTTGGGCTGAGTGCAGCCAAAGGGGAGC
1281 CAGAAATGGGCAGTTCTCCCAGGGAGTGAGCAGCTACTGTAACTTTTTTAAATTAAGACAAAAAGCCTTGAAGAAAATGA
1361 CTTTATTTTTCTAAGTGTAACCTCAGTATTTATGTAATTTGTACAGGGGCCATGCCCCACCCCCCTCCTCCCCCTTTGGG
1441 GTAGACCTTGAGGGTGGGCCAGCATAGGGGGGAGGGTCTTTTACCCTGTGTCAGAGCCTACCTTCACCACCTATATCCAG
1521 AAGGGGAGCTTTTTCAGAAACAGGGCAGCAGTGGGGTGAAATTTTCTTAACCCCTAAGACTGCCTTCAGTAGGAACAAGC
1601 TGGCTTCTGTGATTAGGTGAAGGGATGGGGGAAGATTTTATGCACAGCCTAGTTATCAAGGGGATGATTTGCCGACATGT
1681 TTGAGAACCCCCTAACCTCTAACCCTCATTGCTGTCTTGCCCCAGTTTGGGGTGCCAAGATGGAAGTCACCTTTCTGGGC
1761 TTTCTCCTGGAGATAGCTGGGGCTTATGGGTGGCTTTCAAGGCTGGGGCATGGCAAATCAGGGGCCAGAGAGCAGGGGAG
1841 CTTGGGACTCAGGTCTGTAACTGCCCAGCCCCTTTTCTCTGCTCTTGTTTCACTCCACCATCACTCACTCACTCCCCACT
1921 CCCCCACCCATGGGGAGGAGACCTTTGATGAATTCTTCCTCTCCTTCCCACAAAAGACAGACCCAGTGAGTGAATCAGGC
2001 AAAGTGCTTATAATGTGTGTTGTGTGAGCGTGGCCTTGGGAGGACATGCGTGTGTCAGGGATGAGTTGAGGTGATATTTT
2081 TATGTGCAGCGACCCTTGGTGTTTCCCTTCCTCGGTGGCTCTGGGGTATGTGTGTGTGGGTGTGTGCGCCTGAGTGAGTG
2161 TGTGTGCTTGAATGTGAGTGTGTATGTCAGTGGTTTCTACTTCCCCTGGGATGCTGACCCAGGAATAGTGGACATGGTCA
2241 CAGTCCTATGTACAGAGCTTTCTTTTGTATTAAAAAAAAATACTCTTTCAATAAATGTATCATTTTTGTGCACAGAAAAA
2321 AAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acGUCC-GU-----CUU-CCCCACCACUCc 5'
            |||| ||      || ||||||| ||| 
Target 5' ctCAGGCCATTCCCCAACGGGGTGGGGAGg 3'
965 - 994 133.00 -26.46
2
miRNA  3' acgUCC--GUCUUCCCCACCACUCc 5'
             :||  ::|:||||  |||||| 
Target 5' gtgGGGTCTGGGAGGG--GGTGAGa 3'
1194 - 1216 133.00 -21.10
3
miRNA  3' acguccGUCUUCC---CCACCACUCc 5'
                |||::||   | ||| ||| 
Target 5' gcccctCAGGGGGCCAGCTGGGGAGa 3'
466 - 491 125.00 -16.77
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31597029 4 COSMIC
COSN30472450 8 COSMIC
COSN7883438 10 COSMIC
COSN31538400 12 COSMIC
COSN30156959 32 COSMIC
COSN30167487 66 COSMIC
COSN30101996 72 COSMIC
COSN30100371 83 COSMIC
COSN19703027 90 COSMIC
COSN31584407 108 COSMIC
COSN9783672 147 COSMIC
COSN31517612 159 COSMIC
COSN24301878 210 COSMIC
COSN30169377 244 COSMIC
COSN31531820 317 COSMIC
COSN26585264 364 COSMIC
COSN31485233 366 COSMIC
COSN24482930 422 COSMIC
COSN2510697 429 COSMIC
COSN31590403 549 COSMIC
COSN31549938 563 COSMIC
COSN31543042 573 COSMIC
COSN8514368 578 COSMIC
COSN26636123 624 COSMIC
COSN30170212 726 COSMIC
COSN22738753 927 COSMIC
COSN16360946 1296 COSMIC
COSN31537129 1377 COSMIC
COSN22807936 1575 COSMIC
COSN26645222 1919 COSMIC
COSN32057751 1975 COSMIC
COSN31551114 2040 COSMIC
COSN24301880 2050 COSMIC
COSN19471097 2077 COSMIC
COSN31541130 2095 COSMIC
COSN26507001 2140 COSMIC
COSN26894740 2244 COSMIC
COSN31608302 2277 COSMIC
COSN31550239 2281 COSMIC
COSN31550811 2285 COSMIC
COSN31523522 2310 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs750414610 3 dbSNP
rs756224105 4 dbSNP
rs779852507 5 dbSNP
rs888377042 6 dbSNP
rs990397317 7 dbSNP
rs377482725 8 dbSNP
rs754750407 9 dbSNP
rs370939499 11 dbSNP
rs1401456640 12 dbSNP
rs1393220918 15 dbSNP
rs1286889315 21 dbSNP
rs1388623149 22 dbSNP
rs1328024226 26 dbSNP
rs539078296 33 dbSNP
rs1318470421 34 dbSNP
rs981610848 35 dbSNP
rs777483568 48 dbSNP
rs746492753 52 dbSNP
rs1039967845 66 dbSNP
rs1225507158 67 dbSNP
rs899661941 75 dbSNP
rs878939852 78 dbSNP
rs1472433876 79 dbSNP
rs939102111 83 dbSNP
rs1202871673 84 dbSNP
rs1344399224 88 dbSNP
rs991011105 90 dbSNP
rs546176552 95 dbSNP
rs566076296 98 dbSNP
rs745732101 106 dbSNP
rs930274955 107 dbSNP
rs535273153 108 dbSNP
rs1241394281 109 dbSNP
rs1232204612 111 dbSNP
rs554882140 112 dbSNP
rs1217587455 114 dbSNP
rs969399319 116 dbSNP
rs979032670 120 dbSNP
rs574950017 121 dbSNP
rs537229453 136 dbSNP
rs1412345932 144 dbSNP
rs940620637 164 dbSNP
rs1479870002 166 dbSNP
rs1319048300 179 dbSNP
rs1040187255 181 dbSNP
rs141213290 183 dbSNP
rs577407564 184 dbSNP
rs1328819117 187 dbSNP
rs996267938 193 dbSNP
rs1029121357 196 dbSNP
rs1444527667 204 dbSNP
rs755995945 210 dbSNP
rs546266257 211 dbSNP
rs1198937816 232 dbSNP
rs1020316462 233 dbSNP
rs1221850247 235 dbSNP
rs917017541 236 dbSNP
rs1246121793 239 dbSNP
rs1281180485 241 dbSNP
rs967606022 243 dbSNP
rs1269765284 259 dbSNP
rs559738690 261 dbSNP
rs1346912911 263 dbSNP
rs748990979 265 dbSNP
rs573065323 266 dbSNP
rs576285010 267 dbSNP
rs1296069919 269 dbSNP
rs1434981241 271 dbSNP
rs959170865 275 dbSNP
rs1389891298 279 dbSNP
rs73736723 280 dbSNP
rs561754773 288 dbSNP
rs530760919 289 dbSNP
rs192593765 290 dbSNP
rs951813115 302 dbSNP
rs984396311 303 dbSNP
rs1251839706 309 dbSNP
rs1172740982 310 dbSNP
rs1455209443 316 dbSNP
rs1490091667 317 dbSNP
rs1196783876 324 dbSNP
rs1187893285 330 dbSNP
rs1449977008 331 dbSNP
rs1243686780 337 dbSNP
rs1378969139 353 dbSNP
rs907568231 361 dbSNP
rs563876627 362 dbSNP
rs548419488 364 dbSNP
rs532858955 376 dbSNP
rs1169316594 379 dbSNP
rs1350200482 391 dbSNP
rs1272547761 395 dbSNP
rs546189101 402 dbSNP
rs376962783 405 dbSNP
rs773833036 411 dbSNP
rs1366553554 418 dbSNP
rs1364983717 420 dbSNP
rs1272364608 427 dbSNP
rs566098706 434 dbSNP
rs1403150039 437 dbSNP
rs931767628 442 dbSNP
rs1334434131 445 dbSNP
rs1436160252 446 dbSNP
rs1331887902 467 dbSNP
rs1167396470 473 dbSNP
rs1050258385 474 dbSNP
rs1430399186 482 dbSNP
rs893196201 489 dbSNP
rs1161346711 493 dbSNP
rs566813628 498 dbSNP
rs1011692758 499 dbSNP
rs1050886622 512 dbSNP
rs1337388416 517 dbSNP
rs1230461982 520 dbSNP
rs1041728586 527 dbSNP
rs903217020 534 dbSNP
rs1308092700 536 dbSNP
rs1003124230 539 dbSNP
rs1227063135 542 dbSNP
rs1356138872 543 dbSNP
rs1285128795 548 dbSNP
rs529025033 557 dbSNP
rs1348232811 558 dbSNP
rs183278667 576 dbSNP
rs548878533 577 dbSNP
rs9462872 578 dbSNP
rs1162648952 579 dbSNP
rs1451902528 584 dbSNP
rs951778615 587 dbSNP
rs984532155 588 dbSNP
rs907538266 591 dbSNP
rs557585459 594 dbSNP
rs747709615 595 dbSNP
rs570963011 610 dbSNP
rs1410049640 617 dbSNP
rs992972118 635 dbSNP
rs923146849 641 dbSNP
rs1234639600 642 dbSNP
rs931930477 643 dbSNP
rs1050234375 653 dbSNP
rs1400286556 654 dbSNP
rs914437071 656 dbSNP
rs1287362732 657 dbSNP
rs1317409265 663 dbSNP
rs1374946694 664 dbSNP
rs951160324 669 dbSNP
rs1350404581 670 dbSNP
rs1327768954 671 dbSNP
rs1324430576 674 dbSNP
rs1455464780 675 dbSNP
rs1387583947 678 dbSNP
rs771420888 691 dbSNP
rs1158756965 708 dbSNP
rs867308962 715 dbSNP
rs1041863480 725 dbSNP
rs1410327753 726 dbSNP
rs903271829 738 dbSNP
rs1436965645 748 dbSNP
rs1003254142 750 dbSNP
rs773736669 754 dbSNP
rs1477699401 758 dbSNP
rs1381925731 759 dbSNP
rs909574603 763 dbSNP
rs1463857419 770 dbSNP
rs941045624 770 dbSNP
rs894697254 778 dbSNP
rs1243221000 780 dbSNP
rs975446677 783 dbSNP
rs539901783 784 dbSNP
rs1356629535 788 dbSNP
rs1371031249 792 dbSNP
rs921193812 793 dbSNP
rs1282631437 796 dbSNP
rs1013143781 811 dbSNP
rs1289214981 816 dbSNP
rs1027094913 817 dbSNP
rs868798902 820 dbSNP
rs1466570440 821 dbSNP
rs1424746448 826 dbSNP
rs1454559951 830 dbSNP
rs1189599612 832 dbSNP
rs1174146067 833 dbSNP
rs564905026 834 dbSNP
rs1196112562 835 dbSNP
rs553418088 837 dbSNP
rs1247869064 851 dbSNP
rs1487021003 863 dbSNP
rs1005921637 867 dbSNP
rs1236658931 871 dbSNP
rs1050938652 875 dbSNP
rs1443252039 876 dbSNP
rs892301776 886 dbSNP
rs1189728570 887 dbSNP
rs1226163510 892 dbSNP
rs1364363025 894 dbSNP
rs1296120869 896 dbSNP
rs1383716646 899 dbSNP
rs1376631354 900 dbSNP
rs1301359891 904 dbSNP
rs946154833 906 dbSNP
rs57014925 934 dbSNP
rs961828879 936 dbSNP
rs976124754 945 dbSNP
rs1030015191 947 dbSNP
rs1157091593 951 dbSNP
rs34841232 953 dbSNP
rs953405368 953 dbSNP
rs1391074160 954 dbSNP
rs1034737199 958 dbSNP
rs894761814 962 dbSNP
rs766776945 973 dbSNP
rs1259082986 979 dbSNP
rs188202318 982 dbSNP
rs1024470426 983 dbSNP
rs947165326 984 dbSNP
rs977263681 987 dbSNP
rs1229482627 989 dbSNP
rs924664213 994 dbSNP
rs1319761992 998 dbSNP
rs1311732216 1004 dbSNP
rs528022670 1020 dbSNP
rs1356344134 1028 dbSNP
rs1450284968 1031 dbSNP
rs1408102467 1045 dbSNP
rs1314274213 1046 dbSNP
rs1395813087 1048 dbSNP
rs1299281465 1053 dbSNP
rs1463959041 1054 dbSNP
rs116032487 1065 dbSNP
rs1367145685 1069 dbSNP
rs1057437476 1070 dbSNP
rs1340504906 1071 dbSNP
rs1237676525 1078 dbSNP
rs1419586595 1089 dbSNP
rs1277472325 1090 dbSNP
rs1482458469 1093 dbSNP
rs1330769192 1096 dbSNP
rs894503979 1099 dbSNP
rs541836215 1111 dbSNP
rs555667096 1116 dbSNP
rs1264723979 1117 dbSNP
rs55848540 1125 dbSNP
rs1295383437 1138 dbSNP
rs1202663472 1142 dbSNP
rs962753108 1145 dbSNP
rs759742965 1146 dbSNP
rs920912629 1156 dbSNP
rs1393714400 1160 dbSNP
rs1004303890 1167 dbSNP
rs1389206457 1168 dbSNP
rs1325749372 1173 dbSNP
rs1015775336 1174 dbSNP
rs1397084983 1176 dbSNP
rs544045398 1183 dbSNP
rs1156571062 1196 dbSNP
rs1437363670 1203 dbSNP
rs1179732856 1207 dbSNP
rs1363946143 1207 dbSNP
rs765482237 1208 dbSNP
rs897545627 1209 dbSNP
rs986708736 1211 dbSNP
rs997304935 1216 dbSNP
rs1030403705 1218 dbSNP
rs560322705 1220 dbSNP
rs752804230 1224 dbSNP
rs953064103 1226 dbSNP
rs985797427 1227 dbSNP
rs563889221 1229 dbSNP
rs1159649314 1233 dbSNP
rs1428279557 1235 dbSNP
rs1464509119 1241 dbSNP
rs193087582 1251 dbSNP
rs1021520723 1254 dbSNP
rs1350222130 1260 dbSNP
rs1043925837 1263 dbSNP
rs968638188 1264 dbSNP
rs977229670 1276 dbSNP
rs1390386062 1283 dbSNP
rs1326205586 1299 dbSNP
rs924494276 1304 dbSNP
rs1442238920 1310 dbSNP
rs539914909 1330 dbSNP
rs559972491 1340 dbSNP
rs1055748731 1351 dbSNP
rs894480683 1353 dbSNP
rs1283084313 1360 dbSNP
rs1476737162 1362 dbSNP
rs1321909029 1364 dbSNP
rs13210208 1372 dbSNP
rs1159889227 1377 dbSNP
rs1464133893 1383 dbSNP
rs992959614 1391 dbSNP
rs915892268 1401 dbSNP
rs528920250 1402 dbSNP
rs1014493942 1403 dbSNP
rs1048389761 1405 dbSNP
rs1192204724 1407 dbSNP
rs1024521235 1409 dbSNP
rs1285242493 1409 dbSNP
rs13210222 1412 dbSNP
rs1207074889 1413 dbSNP
rs1343006081 1420 dbSNP
rs1279691288 1421 dbSNP
rs184493910 1422 dbSNP
rs940294734 1424 dbSNP
rs1480588062 1425 dbSNP
rs1430492552 1431 dbSNP
rs1327349777 1432 dbSNP
rs1037587996 1434 dbSNP
rs1393909965 1437 dbSNP
rs750882341 1443 dbSNP
rs1004404611 1444 dbSNP
rs1173709429 1447 dbSNP
rs1435968971 1448 dbSNP
rs901376343 1455 dbSNP
rs1388263103 1466 dbSNP
rs1167201420 1467 dbSNP
rs1243599383 1467 dbSNP
rs1475634195 1467 dbSNP
rs1195660801 1468 dbSNP
rs3734682 1469 dbSNP
rs1486668700 1472 dbSNP
rs1271543721 1473 dbSNP
rs1051484323 1474 dbSNP
rs758509839 1497 dbSNP
rs1007206139 1498 dbSNP
rs3734681 1503 dbSNP
rs750436067 1506 dbSNP
rs1354434001 1510 dbSNP
rs1313046766 1513 dbSNP
rs1464738672 1514 dbSNP
rs1177965114 1515 dbSNP
rs1368112708 1516 dbSNP
rs1378139725 1518 dbSNP
rs1328143938 1519 dbSNP
rs955030442 1534 dbSNP
rs1161250990 1537 dbSNP
rs1421480855 1537 dbSNP
rs1474727396 1545 dbSNP
rs986424000 1559 dbSNP
rs551206201 1572 dbSNP
rs1486717932 1573 dbSNP
rs966999126 1581 dbSNP
rs1204509798 1585 dbSNP
rs998812981 1591 dbSNP
rs1371829918 1603 dbSNP
rs1438893815 1604 dbSNP
rs1031912994 1607 dbSNP
rs1409873001 1608 dbSNP
rs1302204961 1613 dbSNP
rs1293559525 1625 dbSNP
rs959938117 1629 dbSNP
rs993070198 1632 dbSNP
rs571024483 1641 dbSNP
rs1348136758 1651 dbSNP
rs1388952958 1653 dbSNP
rs549299058 1659 dbSNP
rs1442218335 1660 dbSNP
rs879760681 1663 dbSNP
rs1321459462 1664 dbSNP
rs970128553 1670 dbSNP
rs915963143 1675 dbSNP
rs1225812550 1684 dbSNP
rs1476303370 1706 dbSNP
rs35018230 1716 dbSNP
rs1405970488 1718 dbSNP
rs1176693772 1728 dbSNP
rs984062462 1732 dbSNP
rs1235123673 1734 dbSNP
rs909908896 1742 dbSNP
rs553532425 1749 dbSNP
rs940270188 1750 dbSNP
rs1274171538 1751 dbSNP
rs1343012360 1752 dbSNP
rs1037327399 1760 dbSNP
rs922848012 1763 dbSNP
rs1314773280 1764 dbSNP
rs1283052434 1768 dbSNP
rs934141774 1770 dbSNP
rs780062225 1771 dbSNP
rs1489551203 1775 dbSNP
rs1050362824 1789 dbSNP
rs566835582 1805 dbSNP
rs1007340652 1809 dbSNP
rs535881874 1810 dbSNP
rs1440053056 1812 dbSNP
rs1371534051 1817 dbSNP
rs1427884971 1820 dbSNP
rs1327665463 1821 dbSNP
rs898651811 1821 dbSNP
rs1343665045 1823 dbSNP
rs1158593854 1826 dbSNP
rs1401391196 1833 dbSNP
rs1410208004 1834 dbSNP
rs996983392 1839 dbSNP
rs1186643641 1847 dbSNP
rs1042733399 1858 dbSNP
rs1195914146 1873 dbSNP
rs375424268 1877 dbSNP
rs555470444 1885 dbSNP
rs1028076104 1886 dbSNP
rs999175004 1888 dbSNP
rs1347759511 1901 dbSNP
rs1459066097 1903 dbSNP
rs1294511056 1910 dbSNP
rs192636381 1913 dbSNP
rs35780248 1914 dbSNP
rs960235350 1926 dbSNP
rs544059443 1928 dbSNP
rs1014060135 1933 dbSNP
rs183507239 1944 dbSNP
rs189540775 1946 dbSNP
rs1305459487 1952 dbSNP
rs1380334322 1960 dbSNP
rs540025420 1964 dbSNP
rs1288548518 1968 dbSNP
rs979757555 1970 dbSNP
rs78734542 1975 dbSNP
rs959475552 1986 dbSNP
rs1245345805 1987 dbSNP
rs984198390 1995 dbSNP
rs1296721626 1996 dbSNP
rs1396237896 1999 dbSNP
rs1176037441 2001 dbSNP
rs1323756529 2018 dbSNP
rs1222537690 2024 dbSNP
rs1427156965 2030 dbSNP
rs1419225702 2032 dbSNP
rs1186803845 2033 dbSNP
rs1260335932 2038 dbSNP
rs1254876667 2040 dbSNP
rs990574768 2050 dbSNP
rs754675262 2051 dbSNP
rs9395 2060 dbSNP
rs1225113689 2062 dbSNP
rs1449928036 2066 dbSNP
rs1296006931 2068 dbSNP
rs1215444297 2071 dbSNP
rs1342614638 2072 dbSNP
rs1311244000 2084 dbSNP
rs41274924 2107 dbSNP
rs1376117443 2114 dbSNP
rs1305165645 2115 dbSNP
rs973152607 2116 dbSNP
rs922850805 2120 dbSNP
rs1171569774 2134 dbSNP
rs1430607489 2138 dbSNP
rs1415239359 2139 dbSNP
rs146964345 2140 dbSNP
rs985611053 2141 dbSNP
rs1194060457 2147 dbSNP
rs531247933 2149 dbSNP
rs556541114 2151 dbSNP
rs1251748295 2153 dbSNP
rs995184824 2154 dbSNP
rs911423462 2159 dbSNP
rs1291712169 2165 dbSNP
rs943093909 2175 dbSNP
rs1232881129 2178 dbSNP
rs1356242506 2181 dbSNP
rs754157684 2188 dbSNP
rs997034001 2207 dbSNP
rs576713719 2208 dbSNP
rs1049892060 2229 dbSNP
rs1322893308 2242 dbSNP
rs1467539019 2250 dbSNP
rs181102628 2258 dbSNP
rs1007964820 2261 dbSNP
rs1020659263 2263 dbSNP
rs1000504782 2272 dbSNP
rs1032676167 2272 dbSNP
rs879210143 2272 dbSNP
rs904275189 2272 dbSNP
rs1251199365 2279 dbSNP
rs1391826995 2280 dbSNP
rs1178851167 2281 dbSNP
rs1452486488 2283 dbSNP
rs1467010883 2287 dbSNP
rs1272306503 2290 dbSNP
rs934307170 2293 dbSNP
rs1335733042 2296 dbSNP
rs1053211001 2297 dbSNP
rs990627240 2301 dbSNP
rs1308385083 2309 dbSNP
rs1449623992 2316 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000265354.4 | 3UTR | GUGAGAGGCAGGAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
69 hsa-miR-6511b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059269 CELF1 CUGBP Elav-like family member 1 2 2
MIRT061287 IPO7 importin 7 2 2
MIRT115533 MAZ MYC associated zinc finger protein 2 2
MIRT345986 BIRC5 baculoviral IAP repeat containing 5 2 8
MIRT379536 HNRNPK heterogeneous nuclear ribonucleoprotein K 2 2
MIRT442491 RBBP5 RB binding protein 5, histone lysine methyltransferase complex subunit 2 8
MIRT443701 HUNK hormonally up-regulated Neu-associated kinase 2 4
MIRT459167 HSPA6 heat shock protein family A (Hsp70) member 6 2 21
MIRT497179 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT497846 GATA6 GATA binding protein 6 2 4
MIRT519625 ZNF781 zinc finger protein 781 2 2
MIRT519838 ZFP69B ZFP69 zinc finger protein B 2 4
MIRT528560 DNAAF3 dynein axonemal assembly factor 3 2 2
MIRT530718 ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 2 2
MIRT530810 GPR182 G protein-coupled receptor 182 2 2
MIRT533265 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT533726 TMEM246 transmembrane protein 246 2 2
MIRT535547 P2RY2 purinergic receptor P2Y2 2 2
MIRT536019 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT539494 ACTN4 actinin alpha 4 2 2
MIRT541793 MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 2 8
MIRT554509 RUNX1T1 RUNX1 translocation partner 1 2 2
MIRT558784 CEP55 centrosomal protein 55 2 2
MIRT560013 ZNF525 zinc finger protein 525 2 2
MIRT560078 ZNF195 zinc finger protein 195 2 2
MIRT570135 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT570890 ZNF780A zinc finger protein 780A 2 2
MIRT607972 SNX22 sorting nexin 22 2 2
MIRT608104 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT610471 ADAMTS13 ADAM metallopeptidase with thrombospondin type 1 motif 13 2 4
MIRT611134 GGT7 gamma-glutamyltransferase 7 2 2
MIRT611448 NRIP3 nuclear receptor interacting protein 3 2 2
MIRT613019 GABPB1 GA binding protein transcription factor beta subunit 1 2 4
MIRT615753 C6 complement C6 2 2
MIRT620464 CERS6 ceramide synthase 6 2 2
MIRT632248 VPS41 VPS41, HOPS complex subunit 2 2
MIRT636099 ZDHHC22 zinc finger DHHC-type containing 22 2 2
MIRT637452 ZNF324B zinc finger protein 324B 2 2
MIRT638927 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT646768 WDR3 WD repeat domain 3 2 2
MIRT652610 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT652868 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT653655 SLC27A4 solute carrier family 27 member 4 2 2
MIRT657089 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT657884 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT662919 MED18 mediator complex subunit 18 2 2
MIRT685622 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT687427 NRIP1 nuclear receptor interacting protein 1 2 2
MIRT692304 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT695127 PRY2 PTPN13-like, Y-linked 2 2 2
MIRT695144 PRY PTPN13-like, Y-linked 2 2
MIRT696286 IER3IP1 immediate early response 3 interacting protein 1 2 2
MIRT699350 SLC35E1 solute carrier family 35 member E1 2 2
MIRT709901 AGO1 argonaute 1, RISC catalytic component 2 2
MIRT710877 SLC25A42 solute carrier family 25 member 42 2 2
MIRT711365 MED7 mediator complex subunit 7 2 2
MIRT711444 FRMPD3 FERM and PDZ domain containing 3 2 2
MIRT713221 RCAN2 regulator of calcineurin 2 2 2
MIRT713281 LAIR1 leukocyte associated immunoglobulin like receptor 1 2 2
MIRT714195 TRAF7 TNF receptor associated factor 7 2 2
MIRT715152 IL12B interleukin 12B 2 2
MIRT719197 CASP10 caspase 10 2 2
MIRT719469 SRF serum response factor 2 2
MIRT720197 MPP6 membrane palmitoylated protein 6 2 2
MIRT720449 SLC16A5 solute carrier family 16 member 5 2 2
MIRT720461 RAB31 RAB31, member RAS oncogene family 2 2
MIRT721646 ZNF207 zinc finger protein 207 2 2
MIRT722001 CLLU1OS chronic lymphocytic leukemia up-regulated 1 opposite strand 2 2
MIRT725521 FAM229B family with sequence similarity 229 member B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6511b-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-6511b-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-6511b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-6511b-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6511b-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-6511b-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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