pre-miRNA Information
pre-miRNA hsa-mir-744   
Genomic Coordinates chr17: 12081899 - 12081996
Synonyms MIRN744, hsa-mir-744, MIR744
Description Homo sapiens miR-744 stem-loop
Comment This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-744-5p
Sequence 11| UGCGGGGCUAGGGCUAACAGCA |32
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN23015028 1 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs557969425 1 dbSNP
rs748252260 4 dbSNP
rs1470408501 7 dbSNP
rs1178657616 10 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B6B8SM miR-744-5p Safety Biomarker (SAF) Clinical/Experimental Data Expression Increase Urine Real-time polymerase chain reaction
Gene Information
Gene Symbol PIAS4   
Synonyms PIAS-gamma, PIASY, Piasg, ZMIZ6
Description protein inhibitor of activated STAT 4
Transcript NM_015897   
Expression
Putative miRNA Targets on PIAS4
3'UTR of PIAS4
(miRNA target sites are highlighted)
>PIAS4|NM_015897|3'UTR
   1 CCCCGGCCGCACACTCGACTTTCCTGGTGCTCACCACGCAGAGGGGCACGGGCCAGCCTCGGGCGCAGAGGGAGGAGTGA
  81 CCTTTCTTTTTCTTTTTATTGTCGTTCGTTTTGTTTTTCCACCCTTTTGCCTGGCTCCTGGCACCTGTACCTCTGGACTC
 161 TCCTATCGGGGGATTAAAAAAAAAAGTAAAATGACAAAAAAAGATACAAAAAAGAAAAATGAAACAAAAAAGTCAAACTC
 241 TTAAAAACAAGGCCGGCCACCCACACAGCCGCCTCCCCGGCTGGAGTCCGAGCCGGGAAGGGGTAGTGGGCGGGAGGGAC
 321 CAGGACGCCGCCCCGCGCCCTCCCCTCCGGATGCCCCGCCGCCCGCCGCCCTCTGCCCACGACCATTCCAGCCAGTGCGC
 401 GGGGACCCGGGCGGCGGGCGGTGGGGCGCAGCCCCTCTCTGGCGACCACTTTGACGTTTGTCTCTTCCTTTGCTTTTTCT
 481 CTGCAAATGCATCCTCGCCCAGAGACCCTCACGCGCCGAGCAGCGAGCGTTTTAGCCGAGAAGCCATGGAGTGGGTTGGG
 561 GCGGGGAGGGGCAGTAGGGTGGGGGGATGGGTGGGCAGGATGGGGGTACAGTGGGCGGCTGGGGAGGGTTTAGCCACAGA
 641 TGTGTTGTATTTTTTGAAAGTGCAATAATTTGGTATTTTGAAGACCCGGCGTGTGGTCAGGAACCCCCGGGGAAGGCGGG
 721 GGCCCAGGGTGCGGCACCGTGTGGCGTGGGGGGGTCTCAGTTTTCTAGCCAGCTACCTCGGTAATTCCAATTCAGGTTAA
 801 CTTCCCTACGGAACAGCACAGATGTCCACAGATGTCCACAGCTGCCGCCGCCGCCGCCGCCACCATACCCCGGTCCTTGG
 881 GGCATGGGTTGCGGTCGCTTCCCAAGGGGCAGCAGGGACCCCGGCCACCCCGGCTCTCGGTTTGGGTTGATTCCTCTCCT
 961 TTTTGCTCTTGGTTTTCCGACGGGTACGAGGCTGGCCCGGCACCCTGTCCCCCGGGAGCCTCACTCTTCCAGCAGGACCA
1041 GACCAGGGGCCTCCTTCCTGTCCCCAGGCGTTCCCGGCCCCTCGCAGGCCCCACCCATGCCCTTGGCCTCAGGGTCCAAC
1121 AACTGGGGGAGCTACCAGGGCTCTGCCTTCAGGAGCCCACAGCTGGGCACCCCCCTTGCCCCCCAGGAGACCGGGGCGCA
1201 GGCGGGGCACCGGCCTCACCTGGTTCTCCAACACCGCTGCCTGCGGTCTGTTTTGCTTTTGTCCTCCCCAGCCCAGAATT
1281 TTCCTTTGTATAAACAGAACTCCTAGTCAGGAAGCAATATCATTTCAGGTCTAAAGAAAGGGACGTGCATCTGGCCGAGG
1361 GCAGTTCAGTCTCACTGCAGAGCCCGCAGCCCGCTGCGCAGCTCGGCCCCTCCCGCCCGCACGGGCAGCTGAAGGCCGCT
1441 GTTTTCTAATATTTGTATTCTAATTTAATTGTTTTTAAAAAATGCAAATAAAAAAGGTCGAGGTGAAGCCAAAAAAAAAA
1521 AAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acgacaauCGGGAUCGGGGCGu 5'
                  |||   ||||||| 
Target 5' accaggacGCC---GCCCCGCg 3'
319 - 337 143.00 -18.20
2
miRNA  3' acgacaaucGGGA----U-CGGGGCGu 5'
                   ||||    | ||||||| 
Target 5' cgcgccctcCCCTCCGGATGCCCCGCc 3'
334 - 360 143.00 -20.10
3
miRNA  3' acgacaaucGGGAUCGGGGCGu 5'
                   |||| ||||| | 
Target 5' tgggcacccCCCTTGCCCCCCa 3'
1164 - 1185 125.00 -18.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26988964 17 COSMIC
COSN26988965 38 COSMIC
COSN30710744 66 COSMIC
COSN26717988 125 COSMIC
COSN20052060 135 COSMIC
COSN20093487 168 COSMIC
COSN28901344 186 COSMIC
COSN25586075 558 COSMIC
COSN25812637 581 COSMIC
COSN25134463 721 COSMIC
COSN4778207 856 COSMIC
COSN21329756 1154 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1173471757 3 dbSNP
rs574957494 5 dbSNP
rs781196248 6 dbSNP
rs369903714 9 dbSNP
rs777201304 10 dbSNP
rs1252741623 11 dbSNP
rs1267122521 16 dbSNP
rs1488738929 17 dbSNP
rs1191878518 18 dbSNP
rs1268187087 20 dbSNP
rs931370437 21 dbSNP
rs1199709038 22 dbSNP
rs1479586260 23 dbSNP
rs748921773 25 dbSNP
rs770776191 33 dbSNP
rs1257718462 37 dbSNP
rs774845443 39 dbSNP
rs772483629 40 dbSNP
rs1169012131 41 dbSNP
rs1352139932 42 dbSNP
rs1458809606 45 dbSNP
rs113197231 50 dbSNP
rs1363158371 51 dbSNP
rs1275186885 61 dbSNP
rs542710674 62 dbSNP
rs975981155 65 dbSNP
rs921063549 66 dbSNP
rs1389964859 69 dbSNP
rs955282315 74 dbSNP
rs1411267345 75 dbSNP
rs1353236418 82 dbSNP
rs1437751883 82 dbSNP
rs1318882851 83 dbSNP
rs940181220 84 dbSNP
rs553089341 87 dbSNP
rs1453062951 93 dbSNP
rs72976977 94 dbSNP
rs73918127 99 dbSNP
rs1315000275 101 dbSNP
rs1474336198 101 dbSNP
rs1186527715 102 dbSNP
rs1319972431 103 dbSNP
rs986494585 104 dbSNP
rs1280572106 105 dbSNP
rs112184024 108 dbSNP
rs904286573 109 dbSNP
rs14786 114 dbSNP
rs1268187771 117 dbSNP
rs1268720251 119 dbSNP
rs564770470 123 dbSNP
rs1283262658 124 dbSNP
rs913583860 125 dbSNP
rs1342643474 131 dbSNP
rs1031817713 135 dbSNP
rs945000688 139 dbSNP
rs1382142923 140 dbSNP
rs1390083160 141 dbSNP
rs1043671894 142 dbSNP
rs1459969315 144 dbSNP
rs530785241 146 dbSNP
rs1164061004 150 dbSNP
rs937897270 152 dbSNP
rs544198299 153 dbSNP
rs1183212155 161 dbSNP
rs1190825950 168 dbSNP
rs561101233 168 dbSNP
rs1009137448 169 dbSNP
rs1248603652 170 dbSNP
rs529820649 173 dbSNP
rs77769422 175 dbSNP
rs1018869742 176 dbSNP
rs1466761338 176 dbSNP
rs77774566 177 dbSNP
rs1251715005 184 dbSNP
rs1358101411 192 dbSNP
rs546416994 197 dbSNP
rs150006636 201 dbSNP
rs1422757147 202 dbSNP
rs1366504737 205 dbSNP
rs945868993 206 dbSNP
rs921296161 207 dbSNP
rs1324355748 208 dbSNP
rs952697049 208 dbSNP
rs1407279234 212 dbSNP
rs1159132164 213 dbSNP
rs1165903431 217 dbSNP
rs1448669389 218 dbSNP
rs377174475 225 dbSNP
rs1413359257 226 dbSNP
rs1459223024 231 dbSNP
rs894587247 237 dbSNP
rs781549379 238 dbSNP
rs1014303725 241 dbSNP
rs1245612892 243 dbSNP
rs746220346 243 dbSNP
rs1452943678 244 dbSNP
rs1304842858 251 dbSNP
rs1204822313 252 dbSNP
rs1343332878 253 dbSNP
rs563388633 255 dbSNP
rs887110347 259 dbSNP
rs1288998652 261 dbSNP
rs1367584082 264 dbSNP
rs993365036 268 dbSNP
rs1004138341 271 dbSNP
rs1017222732 272 dbSNP
rs1267324497 276 dbSNP
rs963288403 277 dbSNP
rs997050643 279 dbSNP
rs1044656297 280 dbSNP
rs1211928288 283 dbSNP
rs1389098427 284 dbSNP
rs1452476494 285 dbSNP
rs1235407931 287 dbSNP
rs1424422934 288 dbSNP
rs935648504 290 dbSNP
rs1478736526 291 dbSNP
rs1482692565 295 dbSNP
rs147112970 296 dbSNP
rs1028898709 302 dbSNP
rs1277193522 305 dbSNP
rs1209236502 306 dbSNP
rs1460141183 307 dbSNP
rs1279982328 308 dbSNP
rs1312086471 308 dbSNP
rs955540414 312 dbSNP
rs552501955 313 dbSNP
rs913614826 317 dbSNP
rs370104068 327 dbSNP
rs1309588991 328 dbSNP
rs966399699 328 dbSNP
rs1008750873 329 dbSNP
rs1473886217 330 dbSNP
rs1019166052 331 dbSNP
rs1411821561 333 dbSNP
rs569162878 335 dbSNP
rs925246161 336 dbSNP
rs1253568481 337 dbSNP
rs1357646900 339 dbSNP
rs1483138504 340 dbSNP
rs1465724529 341 dbSNP
rs1212856159 343 dbSNP
rs996075752 345 dbSNP
rs1229133697 346 dbSNP
rs2890214 348 dbSNP
rs1331434835 349 dbSNP
rs937912119 350 dbSNP
rs1378176190 355 dbSNP
rs1394010061 355 dbSNP
rs1450106472 355 dbSNP
rs952749535 355 dbSNP
rs1386419053 356 dbSNP
rs984494999 357 dbSNP
rs1015682169 358 dbSNP
rs1055020852 359 dbSNP
rs917758960 361 dbSNP
rs1035197653 362 dbSNP
rs1414961109 364 dbSNP
rs1045798460 365 dbSNP
rs887187371 366 dbSNP
rs538504321 368 dbSNP
rs948847058 369 dbSNP
rs1004210514 372 dbSNP
rs1271430749 373 dbSNP
rs1276161878 373 dbSNP
rs1311318298 375 dbSNP
rs1244322788 376 dbSNP
rs926182371 378 dbSNP
rs1205412269 381 dbSNP
rs1276206147 382 dbSNP
rs960518015 388 dbSNP
rs1038760947 390 dbSNP
rs1319827591 394 dbSNP
rs1481804478 398 dbSNP
rs867529782 399 dbSNP
rs898778440 400 dbSNP
rs138503894 401 dbSNP
rs891558514 402 dbSNP
rs1167300073 407 dbSNP
rs1390034809 408 dbSNP
rs944485205 408 dbSNP
rs1189779817 409 dbSNP
rs371986296 410 dbSNP
rs1451952143 411 dbSNP
rs1265338356 412 dbSNP
rs568805207 413 dbSNP
rs1028551331 416 dbSNP
rs1267486334 416 dbSNP
rs900383939 417 dbSNP
rs1423483225 420 dbSNP
rs955528291 421 dbSNP
rs534373385 422 dbSNP
rs1229040779 428 dbSNP
rs1020754960 429 dbSNP
rs1298520793 432 dbSNP
rs966430721 433 dbSNP
rs887657632 438 dbSNP
rs979120245 439 dbSNP
rs1390945540 443 dbSNP
rs1032435388 444 dbSNP
rs959044506 445 dbSNP
rs1370332964 455 dbSNP
rs554455115 456 dbSNP
rs917805493 457 dbSNP
rs1307437547 462 dbSNP
rs1350406052 464 dbSNP
rs949257853 464 dbSNP
rs1433860143 465 dbSNP
rs983248192 468 dbSNP
rs1180288825 474 dbSNP
rs908657936 474 dbSNP
rs770071219 482 dbSNP
rs940096809 491 dbSNP
rs926193724 492 dbSNP
rs957829608 497 dbSNP
rs1272917022 498 dbSNP
rs111560835 499 dbSNP
rs1228815781 506 dbSNP
rs912915733 509 dbSNP
rs1308981020 510 dbSNP
rs898509905 511 dbSNP
rs545136675 513 dbSNP
rs558497259 514 dbSNP
rs181802690 516 dbSNP
rs1472369281 517 dbSNP
rs1048857834 518 dbSNP
rs1008423152 519 dbSNP
rs1224394142 525 dbSNP
rs1021119833 526 dbSNP
rs1245388194 527 dbSNP
rs1005236819 529 dbSNP
rs1036263028 530 dbSNP
rs1226079794 533 dbSNP
rs1189562378 538 dbSNP
rs897186641 539 dbSNP
rs1014245397 541 dbSNP
rs1024402194 550 dbSNP
rs902653979 552 dbSNP
rs1447818424 558 dbSNP
rs1405033279 559 dbSNP
rs544226354 562 dbSNP
rs1032050497 563 dbSNP
rs1033209547 564 dbSNP
rs1414609981 565 dbSNP
rs1471970581 567 dbSNP
rs972207482 568 dbSNP
rs957544392 569 dbSNP
rs989509235 571 dbSNP
rs1407062499 573 dbSNP
rs1464058076 575 dbSNP
rs1268288861 580 dbSNP
rs918798287 581 dbSNP
rs1353885113 586 dbSNP
rs930122369 589 dbSNP
rs1349179368 593 dbSNP
rs984381093 593 dbSNP
rs1385553701 595 dbSNP
rs1435559478 596 dbSNP
rs1434383545 599 dbSNP
rs1338952186 602 dbSNP
rs1389461111 604 dbSNP
rs1322221073 607 dbSNP
rs1403791383 613 dbSNP
rs1390338689 617 dbSNP
rs959304437 618 dbSNP
rs913476963 620 dbSNP
rs1227191618 627 dbSNP
rs1473015061 629 dbSNP
rs966109066 636 dbSNP
rs1186593162 640 dbSNP
rs1448853487 641 dbSNP
rs975682134 650 dbSNP
rs990489833 657 dbSNP
rs1449476281 665 dbSNP
rs931702548 676 dbSNP
rs1357808044 681 dbSNP
rs1362047519 685 dbSNP
rs1295947390 687 dbSNP
rs1048783405 688 dbSNP
rs1024890863 689 dbSNP
rs1226083266 691 dbSNP
rs1330689219 692 dbSNP
rs780218089 695 dbSNP
rs940530017 699 dbSNP
rs1166539113 700 dbSNP
rs970602833 705 dbSNP
rs1209758002 706 dbSNP
rs983278914 707 dbSNP
rs896369566 708 dbSNP
rs1014673279 709 dbSNP
rs561000670 710 dbSNP
rs907728215 713 dbSNP
rs765470691 715 dbSNP
rs1204943400 717 dbSNP
rs974567317 718 dbSNP
rs919988837 719 dbSNP
rs1033093374 722 dbSNP
rs932678948 725 dbSNP
rs879151901 730 dbSNP
rs1417082315 733 dbSNP
rs1049731758 734 dbSNP
rs750669323 739 dbSNP
rs891412153 740 dbSNP
rs1354980641 743 dbSNP
rs1020959936 744 dbSNP
rs749377885 746 dbSNP
rs1042637339 747 dbSNP
rs1481195229 748 dbSNP
rs966297896 748 dbSNP
rs1249201052 750 dbSNP
rs975734702 755 dbSNP
rs529983536 769 dbSNP
rs953028706 781 dbSNP
rs1001005671 791 dbSNP
rs1442401082 794 dbSNP
rs1283024171 803 dbSNP
rs1279387346 807 dbSNP
rs1334840938 808 dbSNP
rs984542179 810 dbSNP
rs1287982313 814 dbSNP
rs1041945973 817 dbSNP
rs940527326 817 dbSNP
rs1299730932 830 dbSNP
rs1270473268 832 dbSNP
rs1336766462 836 dbSNP
rs971883005 836 dbSNP
rs1157965911 841 dbSNP
rs917844057 841 dbSNP
rs187597826 842 dbSNP
rs1044986296 844 dbSNP
rs1267664793 844 dbSNP
rs1410594080 844 dbSNP
rs905902514 844 dbSNP
rs937317599 844 dbSNP
rs1209585314 846 dbSNP
rs1444273168 847 dbSNP
rs559924971 848 dbSNP
rs1226426668 851 dbSNP
rs1378283514 851 dbSNP
rs1185593682 852 dbSNP
rs768806416 853 dbSNP
rs1319368621 854 dbSNP
rs1385799777 854 dbSNP
rs1453970870 856 dbSNP
rs894894880 857 dbSNP
rs532422874 859 dbSNP
rs745755121 860 dbSNP
rs763124170 860 dbSNP
rs901993623 866 dbSNP
rs997745010 868 dbSNP
rs1247470347 869 dbSNP
rs1189339111 871 dbSNP
rs1024585174 872 dbSNP
rs970340905 873 dbSNP
rs552414320 876 dbSNP
rs1320894015 877 dbSNP
rs1292311761 879 dbSNP
rs1403914132 882 dbSNP
rs1016430355 883 dbSNP
rs1412399278 885 dbSNP
rs961796450 893 dbSNP
rs1350546183 894 dbSNP
rs1014757062 897 dbSNP
rs148317529 898 dbSNP
rs1291438948 912 dbSNP
rs1457156661 917 dbSNP
rs1366571458 922 dbSNP
rs973253654 923 dbSNP
rs1390132048 928 dbSNP
rs920028196 928 dbSNP
rs917782685 932 dbSNP
rs1430391643 933 dbSNP
rs370976817 934 dbSNP
rs954142113 937 dbSNP
rs1490591052 939 dbSNP
rs985512844 940 dbSNP
rs1339919074 941 dbSNP
rs1198920594 947 dbSNP
rs1227439395 953 dbSNP
rs1308749921 954 dbSNP
rs1298637079 955 dbSNP
rs1385857690 957 dbSNP
rs937329271 961 dbSNP
rs1305295235 966 dbSNP
rs1408407703 968 dbSNP
rs1054440153 971 dbSNP
rs912584619 979 dbSNP
rs1249551737 980 dbSNP
rs1464039961 982 dbSNP
rs1375985396 983 dbSNP
rs189946702 988 dbSNP
rs766175265 989 dbSNP
rs548592564 999 dbSNP
rs1201243109 1000 dbSNP
rs116076186 1003 dbSNP
rs774259208 1006 dbSNP
rs1481606042 1007 dbSNP
rs1172595891 1009 dbSNP
rs902057677 1010 dbSNP
rs1323735086 1012 dbSNP
rs1370748080 1014 dbSNP
rs534541653 1021 dbSNP
rs1284816477 1024 dbSNP
rs997630292 1029 dbSNP
rs936872287 1034 dbSNP
rs1350248816 1037 dbSNP
rs1431117909 1037 dbSNP
rs1029205387 1045 dbSNP
rs1053942347 1046 dbSNP
rs1305570681 1048 dbSNP
rs1395046682 1055 dbSNP
rs751266019 1059 dbSNP
rs894920095 1064 dbSNP
rs539572746 1070 dbSNP
rs1431636634 1071 dbSNP
rs1157212811 1073 dbSNP
rs1333155903 1073 dbSNP
rs1046109302 1074 dbSNP
rs867744902 1076 dbSNP
rs1004472457 1077 dbSNP
rs1343071520 1079 dbSNP
rs1014829075 1081 dbSNP
rs369250823 1084 dbSNP
rs1272569511 1085 dbSNP
rs1349567238 1086 dbSNP
rs1280469896 1096 dbSNP
rs1241663568 1098 dbSNP
rs1339167977 1102 dbSNP
rs995107208 1103 dbSNP
rs1408375147 1107 dbSNP
rs1318682240 1115 dbSNP
rs1456886590 1118 dbSNP
rs1210338524 1124 dbSNP
rs1025137737 1136 dbSNP
rs1158877994 1142 dbSNP
rs1455162354 1151 dbSNP
rs1269251734 1162 dbSNP
rs1366573357 1168 dbSNP
rs970557703 1171 dbSNP
rs752647989 1175 dbSNP
rs953310206 1176 dbSNP
rs926546800 1179 dbSNP
rs10405522 1184 dbSNP
rs10405525 1187 dbSNP
rs117110626 1193 dbSNP
rs1247325262 1194 dbSNP
rs1385679431 1198 dbSNP
rs1295448520 1201 dbSNP
rs1430137049 1201 dbSNP
rs1327184094 1204 dbSNP
rs965401763 1205 dbSNP
rs914600898 1210 dbSNP
rs777333817 1213 dbSNP
rs978082610 1216 dbSNP
rs924213428 1217 dbSNP
rs1425187684 1219 dbSNP
rs558351304 1230 dbSNP
rs1166117957 1232 dbSNP
rs1054419877 1234 dbSNP
rs1242264678 1236 dbSNP
rs916774846 1237 dbSNP
rs948181172 1245 dbSNP
rs1050529985 1246 dbSNP
rs889378526 1249 dbSNP
rs1340144888 1255 dbSNP
rs1293587380 1256 dbSNP
rs1046140317 1262 dbSNP
rs1434552258 1265 dbSNP
rs906284429 1267 dbSNP
rs1004544950 1271 dbSNP
rs1035972978 1274 dbSNP
rs1302257647 1276 dbSNP
rs1006500855 1285 dbSNP
rs1306963912 1289 dbSNP
rs545212450 1291 dbSNP
rs1267172103 1292 dbSNP
rs1409363625 1296 dbSNP
rs1419585631 1304 dbSNP
rs1169188645 1307 dbSNP
rs748942641 1309 dbSNP
rs1332505052 1312 dbSNP
rs1212908822 1318 dbSNP
rs897525401 1319 dbSNP
rs770438040 1324 dbSNP
rs1186242358 1332 dbSNP
rs1204421416 1336 dbSNP
rs1029286000 1345 dbSNP
rs1275167524 1346 dbSNP
rs1217575494 1349 dbSNP
rs970444857 1352 dbSNP
rs537438838 1357 dbSNP
rs888961416 1358 dbSNP
rs1347149251 1362 dbSNP
rs1166211520 1364 dbSNP
rs554184014 1365 dbSNP
rs1330258146 1371 dbSNP
rs1460338288 1371 dbSNP
rs1450430302 1372 dbSNP
rs148023396 1373 dbSNP
rs376395571 1373 dbSNP
rs768659614 1373 dbSNP
rs371238760 1375 dbSNP
rs989450158 1377 dbSNP
rs913798864 1384 dbSNP
rs1481245788 1385 dbSNP
rs574350502 1386 dbSNP
rs540137834 1387 dbSNP
rs1361472148 1390 dbSNP
rs1208039051 1391 dbSNP
rs559888459 1391 dbSNP
rs778655934 1393 dbSNP
rs1031016735 1394 dbSNP
rs747267294 1398 dbSNP
rs1050456419 1399 dbSNP
rs989752400 1405 dbSNP
rs1373901088 1406 dbSNP
rs1281220679 1408 dbSNP
rs1268567827 1410 dbSNP
rs769152673 1411 dbSNP
rs376036814 1413 dbSNP
rs1330985236 1415 dbSNP
rs948258725 1419 dbSNP
rs546014064 1420 dbSNP
rs1483336475 1423 dbSNP
rs927742406 1423 dbSNP
rs940457379 1424 dbSNP
rs1410711353 1432 dbSNP
rs1183167790 1434 dbSNP
rs1444614198 1435 dbSNP
rs1036498123 1436 dbSNP
rs540264409 1438 dbSNP
rs762476574 1439 dbSNP
rs1214731906 1446 dbSNP
rs993196527 1452 dbSNP
rs562820433 1456 dbSNP
rs1413292490 1472 dbSNP
rs1050397769 1482 dbSNP
rs889025851 1486 dbSNP
rs199659719 1493 dbSNP
rs1008756995 1495 dbSNP
rs1454137169 1495 dbSNP
rs1001978975 1496 dbSNP
rs769961613 1497 dbSNP
rs1431086499 1498 dbSNP
rs893672589 1500 dbSNP
rs902992372 1501 dbSNP
rs531883485 1504 dbSNP
rs1165489046 1510 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acgacaaucGGGAU-CGGGGCGu 5'
                   ||  | ||||||| 
Target 5' --------uCCGGAUGCCCCGCc 3'
1 - 15
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000262971.2 | 3UTR | UCCGGAUGCCCCGCCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000262971.2 | 3UTR | UCCGGAUGCCCCGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer 0.533 3.7e-3 0.532 3.7e-3 24 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.544 6.6e-3 -0.770 3.6e-5 20 Click to see details
GSE19783 ER+ ER+ breast cancer 0.508 1.1e-2 0.595 2.8e-3 20 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.453 1.1e-2 0.423 1.8e-2 25 Click to see details
GSE17498 Multiple myeloma -0.288 3.6e-2 -0.317 2.3e-2 40 Click to see details
GSE19350 CNS germ cell tumors -0.505 4.7e-2 -0.483 5.6e-2 12 Click to see details
GSE21687 Ependynoma primary tumors 0.192 6.4e-2 0.144 1.3e-1 64 Click to see details
GSE19536 Breast cancer 0.12 1.2e-1 0.142 7.9e-2 100 Click to see details
GSE38226 Liver fibrosis 0.243 1.4e-1 0.266 1.2e-1 21 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.156 2.3e-1 0.104 3.1e-1 25 Click to see details
GSE42095 Differentiated embryonic stem cells -0.156 2.4e-1 -0.218 1.6e-1 23 Click to see details
GSE32688 Pancreatic cancer -0.09 3.1e-1 0.012 4.7e-1 32 Click to see details
GSE28260 Renal cortex and medulla -0.142 3.2e-1 -0.077 4.0e-1 13 Click to see details
GSE19783 ER- ER- breast cancer 0.04 3.6e-1 0.051 3.3e-1 79 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.073 4.3e-1 0.083 4.2e-1 9 Click to see details
GSE26953 Aortic valvular endothelial cells 0.038 4.3e-1 0.042 4.2e-1 24 Click to see details
GSE21032 Prostate cancer 0 5.0e-1 -0.011 4.6e-1 83 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
CHOL -0.796 0.01 -0.417 0.13 9 Click to see details
UCEC 0.497 0.02 0.546 0.01 19 Click to see details
LUAD 0.448 0.07 0.413 0.09 12 Click to see details
HNSC 0.22 0.08 0.270 0.04 42 Click to see details
COAD -0.528 0.09 -0.643 0.04 8 Click to see details
STAD 0.239 0.09 0.122 0.25 32 Click to see details
BLCA 0.273 0.14 0.240 0.17 18 Click to see details
THCA 0.141 0.14 0.202 0.06 59 Click to see details
KIRP 0.163 0.19 -0.040 0.41 32 Click to see details
BRCA -0.092 0.2 -0.085 0.22 84 Click to see details
PRAD 0.085 0.28 0.050 0.37 50 Click to see details
LUSC 0.098 0.28 0.102 0.27 38 Click to see details
PCPG -0.447 0.35 -0.500 0.33 3 Click to see details
LIHC -0.041 0.39 -0.052 0.36 49 Click to see details
KICH 0.046 0.41 0.172 0.21 25 Click to see details
ESCA -0.053 0.44 0.036 0.46 11 Click to see details
KIRC -0.009 0.47 0.022 0.43 68 Click to see details
CESC 0.09 0.47 -0.500 0.33 3 Click to see details
PAAD -0.033 0.48 0.000 0.5 4 Click to see details
PAAD -0.033 0.48 0.000 0.5 4 Click to see details
PAAD -0.033 0.48 0.000 0.5 4 Click to see details
412 hsa-miR-744-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT016085 ARL15 ADP ribosylation factor like GTPase 15 1 1
MIRT016086 AGPAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 1 2
MIRT016087 PPTC7 PTC7 protein phosphatase homolog 2 3
MIRT016088 RASSF1 Ras association domain family member 1 1 1
MIRT016089 IER5 immediate early response 5 1 1
MIRT037383 UFC1 ubiquitin-fold modifier conjugating enzyme 1 1 1
MIRT037384 STAM2 signal transducing adaptor molecule 2 1 1
MIRT037385 SRRM2 serine/arginine repetitive matrix 2 1 1
MIRT037386 DCXR dicarbonyl and L-xylulose reductase 1 1
MIRT037387 TSPAN17 tetraspanin 17 1 1
MIRT037388 ACTB actin beta 1 1
MIRT037389 HIST1H2BC histone cluster 1 H2B family member c 1 1
MIRT037390 ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 1 1
MIRT037391 VDAC1 voltage dependent anion channel 1 1 1
MIRT037392 RNASEK ribonuclease K 1 1
MIRT037393 CDK16 cyclin dependent kinase 16 1 1
MIRT037394 ZCCHC24 zinc finger CCHC-type containing 24 1 1
MIRT037395 ARRDC2 arrestin domain containing 2 1 1
MIRT037396 SGMS1 sphingomyelin synthase 1 1 1
MIRT037397 HSPD1 heat shock protein family D (Hsp60) member 1 1 1
MIRT037398 MRPL46 mitochondrial ribosomal protein L46 1 1
MIRT037399 RHEB Ras homolog, mTORC1 binding 1 1
MIRT037400 ND1 NADH dehydrogenase, subunit 1 (complex I) 1 1
MIRT037401 TP53I13 tumor protein p53 inducible protein 13 1 1
MIRT037402 CD44 CD44 molecule (Indian blood group) 1 1
MIRT037403 USP12 ubiquitin specific peptidase 12 1 1
MIRT037404 AP2B1 adaptor related protein complex 2 beta 1 subunit 1 1
MIRT037405 RPL18A ribosomal protein L18a 1 1
MIRT037406 PPP1CA protein phosphatase 1 catalytic subunit alpha 1 1
MIRT037407 TNRC6B trinucleotide repeat containing 6B 1 1
MIRT037408 PXK PX domain containing serine/threonine kinase like 1 1
MIRT037409 TDRKH tudor and KH domain containing 1 1
MIRT037410 PRRC2A proline rich coiled-coil 2A 1 1
MIRT037411 ATP11A ATPase phospholipid transporting 11A 1 1
MIRT037412 NDE1 nudE neurodevelopment protein 1 1 1
MIRT037413 STK16 serine/threonine kinase 16 1 1
MIRT037414 PSMB2 proteasome subunit beta 2 1 1
MIRT037415 EPN1 epsin 1 1 1
MIRT037416 EN2 engrailed homeobox 2 1 1
MIRT037417 LARP1 La ribonucleoprotein domain family member 1 1 1
MIRT037418 SRCAP Snf2 related CREBBP activator protein 1 1
MIRT037419 SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 1 1
MIRT037420 AP2A2 adaptor related protein complex 2 alpha 2 subunit 1 1
MIRT037421 ACTG1 actin gamma 1 1 1
MIRT037422 PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing 1 1
MIRT037423 UBE2O ubiquitin conjugating enzyme E2 O 1 1
MIRT037424 KLHL15 kelch like family member 15 1 1
MIRT037425 SECISBP2 SECIS binding protein 2 1 1
MIRT037426 KIAA0922 transmembrane 131 like 1 1
MIRT037427 PTMA prothymosin, alpha 1 1
MIRT037428 WDR45B WD repeat domain 45B 1 1
MIRT037429 ZNF282 zinc finger protein 282 1 1
MIRT037430 GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase 1 1
MIRT037431 TNKS tankyrase 1 1
MIRT037432 NOP2 NOP2 nucleolar protein 1 1
MIRT037433 GAK cyclin G associated kinase 1 1
MIRT037434 ATP6 ATP synthase F0 subunit 6 1 1
MIRT037435 DIDO1 death inducer-obliterator 1 1 1
MIRT037436 RPL3 ribosomal protein L3 1 1
MIRT037437 AIMP2 aminoacyl tRNA synthetase complex interacting multifunctional protein 2 1 1
MIRT037438 PIGC phosphatidylinositol glycan anchor biosynthesis class C 1 1
MIRT037439 ARHGEF2 Rho/Rac guanine nucleotide exchange factor 2 1 1
MIRT037440 USP21 ubiquitin specific peptidase 21 1 1
MIRT037441 NUFIP2 NUFIP2, FMR1 interacting protein 2 1 1
MIRT037442 RPS6 ribosomal protein S6 1 1
MIRT037443 ILKAP ILK associated serine/threonine phosphatase 1 1
MIRT037444 COX1 cytochrome c oxidase subunit I 1 1
MIRT037445 VPS37C VPS37C, ESCRT-I subunit 1 1
MIRT037446 CDK12 cyclin dependent kinase 12 1 1
MIRT037447 RBM8A RNA binding motif protein 8A 1 1
MIRT037448 CKB creatine kinase B 1 1
MIRT037449 DHX57 DExH-box helicase 57 1 1
MIRT037450 DDX23 DEAD-box helicase 23 1 1
MIRT037451 ABI3 ABI family member 3 1 1
MIRT037452 GATAD2B GATA zinc finger domain containing 2B 1 1
MIRT037453 PDPK1 3-phosphoinositide dependent protein kinase 1 1 1
MIRT037454 C17orf70 Fanconi anemia core complex associated protein 100 1 1
MIRT037455 SKI SKI proto-oncogene 1 1
MIRT037456 KCTD11 potassium channel tetramerization domain containing 11 1 1
MIRT037457 GNB2L1 receptor for activated C kinase 1 1 1
MIRT037458 NCOA3 nuclear receptor coactivator 3 1 1
MIRT037459 PAK4 p21 (RAC1) activated kinase 4 2 3
MIRT037460 GDI2 GDP dissociation inhibitor 2 1 1
MIRT037461 SLC2A4RG SLC2A4 regulator 1 1
MIRT037462 SLX4 SLX4 structure-specific endonuclease subunit 1 1
MIRT037463 COPA coatomer protein complex subunit alpha 1 1
MIRT037464 GPRASP2 G protein-coupled receptor associated sorting protein 2 1 1
MIRT037465 GGA3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 1 1
MIRT037466 LIMS1 LIM zinc finger domain containing 1 1 1
MIRT037467 COTL1 coactosin like F-actin binding protein 1 1 1
MIRT037468 CAPNS1 calpain small subunit 1 1 1
MIRT037469 FRZB frizzled-related protein 1 1
MIRT037470 UBQLN4 ubiquilin 4 1 1
MIRT037471 NUP153 nucleoporin 153 1 1
MIRT037472 TMEM175 transmembrane protein 175 1 1
MIRT037473 HIST1H2BD histone cluster 1 H2B family member d 1 1
MIRT037474 SREBF1 sterol regulatory element binding transcription factor 1 1 1
MIRT037475 BCL2L12 BCL2 like 12 1 1
MIRT037476 HIST2H2AA3 histone cluster 2 H2A family member a3 1 1
MIRT037477 MINK1 misshapen like kinase 1 1 1
MIRT037478 PDXK pyridoxal kinase 1 1
MIRT037479 FAM110A family with sequence similarity 110 member A 1 1
MIRT037480 ZNF598 zinc finger protein 598 1 1
MIRT037481 ILK integrin linked kinase 1 1
MIRT037482 HINT1 histidine triad nucleotide binding protein 1 1 1
MIRT037483 WBP2 WW domain binding protein 2 1 1
MIRT037484 CYTB cytochrome b 1 1
MIRT037485 SCAMP2 secretory carrier membrane protein 2 1 1
MIRT037486 TRIM33 tripartite motif containing 33 1 1
MIRT037487 SLC25A3 solute carrier family 25 member 3 1 1
MIRT037488 IRS4 insulin receptor substrate 4 1 1
MIRT037489 TSR1 TSR1, ribosome maturation factor 1 1
MIRT037490 TCOF1 treacle ribosome biogenesis factor 1 1 1
MIRT037491 ATXN2L ataxin 2 like 1 1
MIRT037492 MTOR mechanistic target of rapamycin kinase 1 1
MIRT037493 ZNF318 zinc finger protein 318 1 1
MIRT037494 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 3
MIRT037495 SAMD4B sterile alpha motif domain containing 4B 1 1
MIRT037496 STMN1 stathmin 1 1 1
MIRT037497 SAT1 spermidine/spermine N1-acetyltransferase 1 1 1
MIRT037498 SALL1 spalt like transcription factor 1 1 1
MIRT037499 ZSCAN18 zinc finger and SCAN domain containing 18 1 1
MIRT037500 SLC35D1 solute carrier family 35 member D1 1 1
MIRT037501 TM9SF3 transmembrane 9 superfamily member 3 1 1
MIRT037502 TIAM1 T-cell lymphoma invasion and metastasis 1 1 1
MIRT037503 CHD5 chromodomain helicase DNA binding protein 5 1 1
MIRT037504 BAG6 BCL2 associated athanogene 6 1 1
MIRT037505 MED28 mediator complex subunit 28 1 1
MIRT037506 ANKRD52 ankyrin repeat domain 52 1 1
MIRT037507 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 1 1
MIRT037508 PPDPF pancreatic progenitor cell differentiation and proliferation factor 1 1
MIRT037509 PRKACA protein kinase cAMP-activated catalytic subunit alpha 1 1
MIRT037510 HPCAL4 hippocalcin like 4 1 1
MIRT037511 ZNF256 zinc finger protein 256 1 1
MIRT037512 CGNL1 cingulin like 1 1 1
MIRT037513 TUBA1B tubulin alpha 1b 1 1
MIRT037514 LNPEP leucyl and cystinyl aminopeptidase 1 1
MIRT037515 PDE4A phosphodiesterase 4A 1 1
MIRT037516 HOXD11 homeobox D11 2 3
MIRT037517 QARS glutaminyl-tRNA synthetase 1 1
MIRT037518 G3BP1 G3BP stress granule assembly factor 1 1 1
MIRT037519 PLEKHM2 pleckstrin homology and RUN domain containing M2 1 1
MIRT037520 POLR2A RNA polymerase II subunit A 1 1
MIRT037521 KIAA1462 junctional cadherin 5 associated 1 1
MIRT037522 SF3A1 splicing factor 3a subunit 1 1 1
MIRT037523 YBX1 Y-box binding protein 1 1 1
MIRT037524 PTGES3 prostaglandin E synthase 3 1 1
MIRT037525 FOXO3 forkhead box O3 1 1
MIRT037526 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 1 1
MIRT037527 AARS alanyl-tRNA synthetase 1 1
MIRT037528 ZNF155 zinc finger protein 155 1 1
MIRT037529 NCS1 neuronal calcium sensor 1 1 1
MIRT037530 FKBP4 FK506 binding protein 4 1 1
MIRT037531 ARHGDIA Rho GDP dissociation inhibitor alpha 1 1
MIRT037532 MAPK7 mitogen-activated protein kinase 7 1 1
MIRT037533 AGPAT2 1-acylglycerol-3-phosphate O-acyltransferase 2 1 1
MIRT037534 HIST1H1E histone cluster 1 H1 family member e 1 1
MIRT037535 MLF2 myeloid leukemia factor 2 1 1
MIRT037536 EDC3 enhancer of mRNA decapping 3 1 1
MIRT037537 CHRAC1 chromatin accessibility complex 1 1 1
MIRT037538 WIPF3 WAS/WASL interacting protein family member 3 1 1
MIRT037539 COX2 cytochrome c oxidase subunit II 1 1
MIRT037540 SRSF1 serine and arginine rich splicing factor 1 1 1
MIRT037541 CTNNBIP1 catenin beta interacting protein 1 1 1
MIRT037542 RPL4 ribosomal protein L4 1 1
MIRT037543 COX3 cytochrome c oxidase III 1 1
MIRT037544 DDX54 DEAD-box helicase 54 1 1
MIRT037545 TOB2 transducer of ERBB2, 2 1 1
MIRT037546 MAN2C1 mannosidase alpha class 2C member 1 1 1
MIRT037547 SMCR7L mitochondrial elongation factor 1 1 1
MIRT037548 RPLP1 ribosomal protein lateral stalk subunit P1 1 1
MIRT037549 RAN RAN, member RAS oncogene family 1 1
MIRT037550 NONO non-POU domain containing octamer binding 1 1
MIRT037551 CYB5R3 cytochrome b5 reductase 3 1 1
MIRT037552 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 1 1
MIRT037553 COLGALT1 collagen beta(1-O)galactosyltransferase 1 1 1
MIRT037554 MGRN1 mahogunin ring finger 1 1 1
MIRT037555 ANAPC1 anaphase promoting complex subunit 1 1 1
MIRT037556 TBX1 T-box 1 1 1
MIRT037557 NXPH4 neurexophilin 4 1 1
MIRT037558 HSPA1B heat shock protein family A (Hsp70) member 1B 1 1
MIRT037559 UBE2A ubiquitin conjugating enzyme E2 A 1 1
MIRT037560 KPNB1 karyopherin subunit beta 1 1 1
MIRT037561 NDUFB10 NADH:ubiquinone oxidoreductase subunit B10 1 1
MIRT037562 SYMPK symplekin 1 1
MIRT037563 SYPL1 synaptophysin like 1 1 1
MIRT037564 LRP3 LDL receptor related protein 3 1 1
MIRT037565 DDX24 DEAD-box helicase 24 1 1
MIRT037566 WDR37 WD repeat domain 37 1 1
MIRT037567 RPS14 ribosomal protein S14 1 1
MIRT037568 FAM53C family with sequence similarity 53 member C 1 1
MIRT037569 NMT1 N-myristoyltransferase 1 1 1
MIRT037570 PAGR1 PAXIP1 associated glutamate rich protein 1 1 1
MIRT037571 AKT2 AKT serine/threonine kinase 2 1 1
MIRT037572 TMEM14C transmembrane protein 14C 1 1
MIRT037573 MEX3D mex-3 RNA binding family member D 1 1
MIRT037574 BRAF B-Raf proto-oncogene, serine/threonine kinase 1 1
MIRT037575 POLR2L RNA polymerase II subunit L 1 1
MIRT037576 SERP1 stress associated endoplasmic reticulum protein 1 1 1
MIRT037577 C8orf33 chromosome 8 open reading frame 33 1 1
MIRT037578 NR1D2 nuclear receptor subfamily 1 group D member 2 1 1
MIRT037579 POLD3 DNA polymerase delta 3, accessory subunit 1 1
MIRT037580 HMGA1 high mobility group AT-hook 1 1 1
MIRT037581 SLC35B4 solute carrier family 35 member B4 1 1
MIRT037582 PELP1 proline, glutamate and leucine rich protein 1 1 1
MIRT037583 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 1 1
MIRT037584 RPL7A ribosomal protein L7a 1 1
MIRT037585 LAIR1 leukocyte associated immunoglobulin like receptor 1 1 1
MIRT037586 RPL10 ribosomal protein L10 1 1
MIRT037587 MRPS16 mitochondrial ribosomal protein S16 1 1
MIRT037588 SRM spermidine synthase 1 1
MIRT037589 EIF3K eukaryotic translation initiation factor 3 subunit K 1 1
MIRT037590 DESI1 desumoylating isopeptidase 1 1 1
MIRT037591 BET1 Bet1 golgi vesicular membrane trafficking protein 1 1
MIRT037592 HTRA2 HtrA serine peptidase 2 1 1
MIRT037593 LARP6 La ribonucleoprotein domain family member 6 1 1
MIRT037594 NOTCH2 notch 2 1 1
MIRT037595 ADCY9 adenylate cyclase 9 1 1
MIRT037596 C6orf62 chromosome 6 open reading frame 62 1 1
MIRT037597 FBXL19 F-box and leucine rich repeat protein 19 1 1
MIRT037598 L3MBTL2 L3MBTL2, polycomb repressive complex 1 subunit 1 1
MIRT037599 TRIM28 tripartite motif containing 28 1 1
MIRT037600 LGALS3 galectin 3 1 1
MIRT037601 IGSF8 immunoglobulin superfamily member 8 1 1
MIRT037602 LIN37 lin-37 DREAM MuvB core complex component 1 1
MIRT037603 PTPRF protein tyrosine phosphatase, receptor type F 1 1
MIRT037604 MTSS1L MTSS1L, I-BAR domain containing 1 1
MIRT037605 TRMT2A tRNA methyltransferase 2 homolog A 1 1
MIRT037606 DVL1 dishevelled segment polarity protein 1 1 1
MIRT037607 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 1 1
MIRT037608 TOR2A torsin family 2 member A 1 1
MIRT037609 RPS6KA5 ribosomal protein S6 kinase A5 1 1
MIRT037610 SMYD4 SET and MYND domain containing 4 1 1
MIRT037611 TJAP1 tight junction associated protein 1 1 1
MIRT037612 IRAK1 interleukin 1 receptor associated kinase 1 1 1
MIRT037613 PPM1M protein phosphatase, Mg2+/Mn2+ dependent 1M 1 1
MIRT037614 EIF4A2 eukaryotic translation initiation factor 4A2 1 1
MIRT037615 GFER growth factor, augmenter of liver regeneration 1 1
MIRT037616 PKP2 plakophilin 2 1 1
MIRT037617 FARSB phenylalanyl-tRNA synthetase beta subunit 1 1
MIRT037618 OPRD1 opioid receptor delta 1 1 1
MIRT037619 CCNY cyclin Y 1 1
MIRT037620 CNOT1 CCR4-NOT transcription complex subunit 1 1 1
MIRT037621 CXCL16 C-X-C motif chemokine ligand 16 1 1
MIRT037622 CEBPA CCAAT/enhancer binding protein alpha 1 1
MIRT037623 DDX11 DEAD/H-box helicase 11 1 1
MIRT037624 URB1 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) 1 1
MIRT037625 SBF1 SET binding factor 1 1 1
MIRT037626 GNB2 G protein subunit beta 2 1 1
MIRT037627 KMT2D lysine methyltransferase 2D 2 3
MIRT037628 DDX17 DEAD-box helicase 17 1 1
MIRT037629 SORBS3 sorbin and SH3 domain containing 3 1 1
MIRT037630 TAPBP TAP binding protein 1 1
MIRT037631 BCR BCR, RhoGEF and GTPase activating protein 1 1
MIRT037632 RPL18 ribosomal protein L18 1 1
MIRT037633 INTS3 integrator complex subunit 3 1 1
MIRT037634 CDC25B cell division cycle 25B 1 1
MIRT037635 LDOC1L retrotransposon Gag like 6 1 1
MIRT037636 TUB tubby bipartite transcription factor 1 1
MIRT037637 NUDT2 nudix hydrolase 2 1 1
MIRT037638 CDAN1 codanin 1 1 1
MIRT037639 MRS2 MRS2, magnesium transporter 1 1
MIRT037640 PYGB glycogen phosphorylase B 1 1
MIRT037641 LDLRAD3 low density lipoprotein receptor class A domain containing 3 1 1
MIRT037642 COL5A1 collagen type V alpha 1 chain 1 1
MIRT037643 ATF7IP activating transcription factor 7 interacting protein 1 1
MIRT037644 AGO1 argonaute 1, RISC catalytic component 1 1
MIRT037645 ZNF212 zinc finger protein 212 1 1
MIRT037646 TSC2 TSC complex subunit 2 1 1
MIRT037647 FASN fatty acid synthase 1 1
MIRT037648 NOL9 nucleolar protein 9 1 1
MIRT037649 CLUH clustered mitochondria homolog 1 1
MIRT037650 PHF8 PHD finger protein 8 1 1
MIRT037651 EIF4G1 eukaryotic translation initiation factor 4 gamma 1 1 1
MIRT037652 TRAPPC12 trafficking protein particle complex 12 1 1
MIRT037653 HOXC11 homeobox C11 1 1
MIRT037654 DGCR14 ess-2 splicing factor homolog 1 1
MIRT037655 SLC25A1 solute carrier family 25 member 1 1 1
MIRT037656 MEX3C mex-3 RNA binding family member C 1 1
MIRT037657 RAI1 retinoic acid induced 1 1 1
MIRT037658 LY6E lymphocyte antigen 6 family member E 1 1
MIRT037659 SEC16A SEC16 homolog A, endoplasmic reticulum export factor 1 1
MIRT037660 RPL37 ribosomal protein L37 1 1
MIRT037661 CNN2 calponin 2 1 1
MIRT037662 ALDH18A1 aldehyde dehydrogenase 18 family member A1 1 1
MIRT037663 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 1 1
MIRT037664 EIF4A1 eukaryotic translation initiation factor 4A1 1 1
MIRT037665 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 1 1
MIRT037666 PTPMT1 protein tyrosine phosphatase, mitochondrial 1 1 1
MIRT037667 NCEH1 neutral cholesterol ester hydrolase 1 1 1
MIRT037668 ART5 ADP-ribosyltransferase 5 1 1
MIRT037669 MRPS2 mitochondrial ribosomal protein S2 1 1
MIRT037670 NCL nucleolin 1 1
MIRT037671 NCKAP5L NCK associated protein 5 like 1 1
MIRT037672 ZCCHC14 zinc finger CCHC-type containing 14 1 1
MIRT037673 CCDC71 coiled-coil domain containing 71 1 1
MIRT037674 SURF4 surfeit 4 1 1
MIRT037675 RPL13 ribosomal protein L13 1 1
MIRT037676 ACTN4 actinin alpha 4 1 1
MIRT037677 PA2G4 proliferation-associated 2G4 1 1
MIRT037678 MIF macrophage migration inhibitory factor 1 1
MIRT037679 UBE2N ubiquitin conjugating enzyme E2 N 1 1
MIRT037680 LYNX1 Ly6/neurotoxin 1 1 1
MIRT037681 TACC3 transforming acidic coiled-coil containing protein 3 1 1
MIRT037682 GSR glutathione-disulfide reductase 1 1
MIRT037683 GSK3A glycogen synthase kinase 3 alpha 1 1
MIRT037684 ZMYM3 zinc finger MYM-type containing 3 1 1
MIRT037685 ERP29 endoplasmic reticulum protein 29 1 1
MIRT037686 MATR3 matrin 3 1 1
MIRT037687 FANCG Fanconi anemia complementation group G 1 1
MIRT037688 FAM83G family with sequence similarity 83 member G 1 1
MIRT037689 DUSP18 dual specificity phosphatase 18 1 1
MIRT037690 MYC MYC proto-oncogene, bHLH transcription factor 3 2
MIRT037691 TSPAN7 tetraspanin 7 1 1
MIRT037692 ATMIN ATM interactor 1 1
MIRT037693 SEPT2 septin 2 1 1
MIRT037694 FOXRED2 FAD dependent oxidoreductase domain containing 2 1 1
MIRT037695 TECR trans-2,3-enoyl-CoA reductase 1 1
MIRT037696 MRPL11 mitochondrial ribosomal protein L11 1 1
MIRT037697 IP6K1 inositol hexakisphosphate kinase 1 1 1
MIRT037698 PSMD4 proteasome 26S subunit, non-ATPase 4 1 1
MIRT037699 SH3GL1 SH3 domain containing GRB2 like 1, endophilin A2 1 1
MIRT037700 CTNNB1 catenin beta 1 1 1
MIRT037701 TMEM189 transmembrane protein 189 1 1
MIRT037702 LDLR low density lipoprotein receptor 1 1
MIRT037703 OGFR opioid growth factor receptor 1 1
MIRT037704 ADAP2 ArfGAP with dual PH domains 2 1 1
MIRT037705 LIPA lipase A, lysosomal acid type 1 1
MIRT037706 SNAPC4 small nuclear RNA activating complex polypeptide 4 1 1
MIRT037707 FBN2 fibrillin 2 1 1
MIRT037708 ZNF704 zinc finger protein 704 1 1
MIRT037709 EIF3M eukaryotic translation initiation factor 3 subunit M 1 1
MIRT037710 SMC1A structural maintenance of chromosomes 1A 1 1
MIRT037711 FZR1 fizzy and cell division cycle 20 related 1 1 1
MIRT037712 NANOS1 nanos C2HC-type zinc finger 1 1 1
MIRT037713 PRR12 proline rich 12 1 1
MIRT037714 PHC2 polyhomeotic homolog 2 1 1
MIRT037715 NOP9 NOP9 nucleolar protein 1 1
MIRT037716 HM13 histocompatibility minor 13 1 1
MIRT037717 PRDX5 peroxiredoxin 5 1 1
MIRT037718 IRGQ immunity related GTPase Q 1 1
MIRT037719 TGFB1 transforming growth factor beta 1 7 2
MIRT037720 MARCH3 membrane associated ring-CH-type finger 3 1 1
MIRT037721 TBX2 T-box 2 1 1
MIRT037722 TSC22D3 TSC22 domain family member 3 1 1
MIRT037723 DUT deoxyuridine triphosphatase 1 1
MIRT037724 FAM171A2 family with sequence similarity 171 member A2 1 1
MIRT037725 FGFR1 fibroblast growth factor receptor 1 1 1
MIRT037726 FRAT1 FRAT1, WNT signaling pathway regulator 1 1
MIRT037727 PSMD11 proteasome 26S subunit, non-ATPase 11 1 1
MIRT037728 PABPC1 poly(A) binding protein cytoplasmic 1 1 1
MIRT037729 ENO1 enolase 1 1 1
MIRT037730 AP3D1 adaptor related protein complex 3 delta 1 subunit 1 1
MIRT037731 TUBA1A tubulin alpha 1a 1 1
MIRT037732 ULK3 unc-51 like kinase 3 1 1
MIRT037733 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase type 1 alpha 1 1
MIRT037734 SLC25A46 solute carrier family 25 member 46 1 1
MIRT037735 MED15 mediator complex subunit 15 1 1
MIRT037736 IRF2BP1 interferon regulatory factor 2 binding protein 1 1 1
MIRT037737 UBA1 ubiquitin like modifier activating enzyme 1 1 1
MIRT037738 ATHL1 protein-glucosylgalactosylhydroxylysine glucosidase 1 1
MIRT037739 CTNNA1 catenin alpha 1 1 1
MIRT037740 ADRM1 adhesion regulating molecule 1 1 1
MIRT037741 CCDC106 coiled-coil domain containing 106 1 1
MIRT054493 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 3 1
MIRT451195 PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 2 2
MIRT452931 DISC1 disrupted in schizophrenia 1 2 2
MIRT455468 LYPLA2 lysophospholipase II 2 2
MIRT457068 TOR4A torsin family 4 member A 2 2
MIRT464195 VGLL4 vestigial like family member 4 2 4
MIRT483030 KHSRP KH-type splicing regulatory protein 2 4
MIRT486062 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT486120 INO80E INO80 complex subunit E 2 2
MIRT486866 DPF1 double PHD fingers 1 2 2
MIRT488343 PAX2 paired box 2 2 2
MIRT488790 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT490249 MFI2 melanotransferrin 2 2
MIRT490264 HAAO 3-hydroxyanthranilate 3,4-dioxygenase 2 2
MIRT490756 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT492321 SETD1B SET domain containing 1B 2 2
MIRT492851 NRGN neurogranin 2 2
MIRT499604 ANKRD45 ankyrin repeat domain 45 2 2
MIRT500189 BARX1 BARX homeobox 1 2 4
MIRT516765 FAM212B family with sequence similarity 212 member B 2 4
MIRT517949 TRIM59 tripartite motif containing 59 2 2
MIRT521182 SCAF4 SR-related CTD associated factor 4 2 2
MIRT526462 OSBPL5 oxysterol binding protein like 5 2 2
MIRT535148 PLEKHG5 pleckstrin homology and RhoGEF domain containing G5 2 2
MIRT569528 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT570593 NFIX nuclear factor I X 2 2
MIRT571219 F2R coagulation factor II thrombin receptor 2 2
MIRT574145 MARVELD1 MARVEL domain containing 1 2 2
MIRT608758 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT649509 RAB17 RAB17, member RAS oncogene family 2 2
MIRT692165 RNF207 ring finger protein 207 2 2
MIRT703495 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT711081 NEUROD2 neuronal differentiation 2 2 2
MIRT712090 UNC13A unc-13 homolog A 2 2
MIRT712531 CYTH2 cytohesin 2 2 2
MIRT712755 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT712893 TGFA transforming growth factor alpha 2 2
MIRT714684 PRX periaxin 2 2
MIRT714723 VPS8 VPS8, CORVET complex subunit 2 2
MIRT714814 NOB1 NIN1/PSMD8 binding protein 1 homolog 2 2
MIRT716774 C1orf229 chromosome 1 open reading frame 229 2 2
MIRT717511 HRNR hornerin 2 2
MIRT717653 THBS2 thrombospondin 2 2 2
MIRT719595 PIAS4 protein inhibitor of activated STAT 4 2 2
MIRT720525 PTGR2 prostaglandin reductase 2 2 2
MIRT724925 VPS18 VPS18, CORVET/HOPS core subunit 2 2
MIRT737146 NOS3 nitric oxide synthase 3 1 0
MIRT756003 SLC7A5 solute carrier family 7 member 5 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-744 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-744 Tert-butyl hydroperoxide (t-BHP) NULL 6410 Microarray mouse auditory cells 20510889 2010 up-regulated
miR-744 Ursodeoxycholic acid (UDCA) approved 31401 Microarray rat Liver 20689055 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-744 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901)
hsa-mir-744 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-744 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-744 Fluorouracil 3385 NSC19893 approved resistant cell line (OE19)
hsa-mir-744 Fluorouracil 3385 NSC19893 approved resistant cell line (KYSE)
hsa-mir-744 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-744 Cisplatin 5460033 NSC119875 approved resistant cell line (SGC-7901)
hsa-miR-744-5p [1,1'-binaphthalene]-2,2',3,3'-tetrol 316673 NSC245006 sensitive
hsa-miR-744-5p 4-n-[12-[(5-amino-6-chloropyrimidin-4-yl)amino]dodecyl]-6-chloropyrimidine-4,5-diamine 358989 NSC619196 sensitive
hsa-miR-744-5p 5,7-dibromo-2-[(e)-2-(4-hydroxy-3-methoxyphenyl)ethenyl]quinolin-8-ol 135460261 NSC67090 sensitive
hsa-miR-744-5p Benzyl 2-(dibenzylamino)-3-phenylpropanoate 375616 NSC655438 sensitive
hsa-miR-744-5p N'-[(Z)-[(4Z)-2-(1,3-benzodioxol-5-yl)-4-[[4-oxo-4-[2-(trifluoromethyl)anilino]butanoyl]hydrazinylidene]chromen-3-ylidene]amino]-N-[2-(trifluoromethyl)phenyl]butanediamide 6399328 NSC641210 sensitive
hsa-miR-744-5p Paullone analog 47 396411 NSC702373 sensitive
hsa-miR-744-5p Ursa-11,13(18)-dien-28-oic acid-3.beta.-ol 378695 NSC661747 sensitive
hsa-miR-744-5p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7, LY2)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-744-5p Carboplatin 38904 NSC241240 approved sensitive High Ovarian Cancer tissue and cell line (MDAH-2274, SKOV3)
hsa-miR-744-5p Gefitinib 123631 NSC715055 approved resistant High Lung Adenocarcinoma cell line (A549)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive High Esophageal Squamous Cell Carcinoma cell line (KYSE410)
hsa-miR-744-5p Tamoxifen 2733525 NSC180973 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-744-5p Vinorelbine 44424639 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-744-5p Epirubicin 41867 NSC256942 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-744-5p Erlotinib 176870 NSC718781 approved sensitive High Non-Small Cell Lung Cancer tissue
hsa-miR-744-5p Gefitinib 123631 NSC715055 approved sensitive High Non-Small Cell Lung Cancer tissue
hsa-miR-744-5p Sunitinib 5329102 NSC750690 approved sensitive High Renal Cell Cancer tissue
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-744-5p Sorafenib 216239 NSC747971 approved sensitive Low Hepatocellular Carcinoma cell line (HepG2)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901, BGC-823)
hsa-miR-744-5p Oxaliplatin 6857599 NSC266046 approved resistant Low Colorectal Cancer cell line (HCT-116)
hsa-miR-744-5p Bortezomib 387447 NSC681239 approved sensitive Low Multiple Myeloma tissue
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-744-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-744-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-744-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-744-5p Fluorouracil 3385 NSC19893 approved sensitive cell line (HCT15)
hsa-miR-744-5p 4-Hydroxytamoxifen+Tamoxifen sensitive cell line (LY2)
hsa-miR-744-5p Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-744-5p Methotrexate 126941 NSC740 approved resistant cell line (HT29)
hsa-miR-744-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-744-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (MDA-231)
hsa-miR-744-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (PC3PR20)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)
hsa-miR-744-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (H23)

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