pre-miRNA Information
pre-miRNA hsa-mir-605   
Genomic Coordinates chr10: 51299573 - 51299655
Synonyms MIRN605, hsa-mir-605, MIR605
Description Homo sapiens miR-605 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-605-3p
Sequence 51| AGAAGGCACUAUGAGAUUUAGA |72
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 10 + 51299626 27587585, 28550310, 26028588, 26449202, 26487287, 29165639 MiREDiBase
A-to-I 14 10 + 51299636 29233923 MiREDiBase
A-to-I 20 10 + 51299642 18684997, 26449202, 27587585, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs759219082 5 dbSNP
rs1491224174 9 dbSNP
rs746611214 10 dbSNP
rs367648737 11 dbSNP
rs1359467239 14 dbSNP
rs1442565019 16 dbSNP
Putative Targets

Gene Information
Gene Symbol BLOC1S6   
Synonyms BLOS6, HPS9, PA, PALLID, PLDN
Description biogenesis of lysosomal organelles complex 1 subunit 6
Transcript NM_012388   
Expression
Putative miRNA Targets on BLOC1S6
3'UTR of BLOC1S6
(miRNA target sites are highlighted)
>BLOC1S6|NM_012388|3'UTR
   1 AAAGTTGTGTTTGTGTGTTTTCTTCTCCTGTCCCATATTTGGGTTATGATGACTCAAGTGTAGACTGAAGTTGAGGTAGT
  81 GCCTTATGCCATTATGTCATATGTTGAAATCCTTATTCCGGTATTACTGTGTCTCCATGCCTTTTTTCCAAGTAGCAGAC
 161 GTCATGTTGCATGGTTTTTGATATTTATATGTAAGTTTTTCAAATTTTGCTTAATTTTAAAATTTATTATTTTGATCTTG
 241 AATTATTTATAAACTGGAAAGTGGTTTGATTATTGTGAGTCAAAACTCTAAGTGGTTAAAAATTAGTATGAATTTTTTAG
 321 CTTCTTAATGAATATGGATTTAAAACTCTCCAGTTCTTATTTTATGAAATGACTTGCCTTTCTGGTAATACAATGCTGAT
 401 TTTTTAGTAATTGCCTTTTCATTACTTTGTTAAGAAGAAATGCCAGCTGTTTAATCACACCTACCCCTGGAAAAGAGGTA
 481 AACCTTTTGAACAGTTGAATTTCATCAGAAGCTCTATAGCTTTTTGGTGAGAGGAAGTGATACTCTTTATTACAAGAAAC
 561 AAGGAATTAACAAAAATAAGGAACTTGTTGCTACCTTTCTTTTCTGTTGAACATTAAAAATAATTTGGTTTGTGGACTGG
 641 GCATGGTGGCTTATGGAAAAGAGGTGAGCCTTTGTGAAGAACATAATGGAAAAGTGCATGTACGGGAAATAACAGCACTT
 721 TAGGTGTAGTTCAGGTGAGCAAGATGCCAGATAGTTTCTACTAACCATATACTCTTTCTGCTTCTTAGCGTCGTTGTCAC
 801 TGCTTCTGTGGCTTTTGGGTTCAAAGTAGATTATATATATTCCTAAAGCTTGGTGGAGGTAGTGGAGCTATCACACACTC
 881 AAATGAGCTTGTATATTTATAATACAATATAGTATTATAGTAACAGTTATCATACACTGAGATATAGTTTCTGTGCTTGT
 961 AAAAAATTCTTGAAGTGAGGCCGGGTGCGGTGGCTCATGCCTGTAATCCCAACGCTTTGGGACGCCGAGGCGGGTGGATC
1041 ATGAGGTCAAAAGATTGAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAGAAATACAAAAATTAGCTGGGTG
1121 TGGGGGCGTGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCA
1201 GTAAGCCAAGATCGTGCCACTGCACTCCAGCCTTGGTGACAGAGCAAGACTCCGTCTCCAAAAAAAAGAAAAAAAAATTT
1281 CTTGAAGTGGAATGATGTACACCAAATACCCACTTTATAGATAATTACAGGGATGGTGAAAAATTAGTAAATAGCTTCAC
1361 AAAAGAGGCAGCGTGATACCTTTAGTGTTTTCTAGAATTTTTTTCTGGATATTATATGTAAGAATTTATTGTTTGAGGGA
1441 AATACGAGGTTTCATTGTTTAAAATCAAGAGTGTATTGTTTACTGTTTTACAGTATTATTTAATATCCAACTGGTCTCCA
1521 ATCTCCATTACATAGGGACTGTACAGAGCCTGTGAAGATGTATGAATGGTATCTTTTATAATCCACAATACATTTCTGGT
1601 AAGATGGAATCACTACCTCTGATCACATATCAGGCTAACGATAGAGAAAGCATTAGGTTTAAGTTGAGGGCTAAGAACTG
1681 GTTTGTTTAAAGGTTTAAATTGTTGGAAAAGAGCATTTGCCTTCTTTAATGAATGATGGTCTCACAATTCAGTTGACTTT
1761 GACCTAATATTTAAGAATATAAATATATTTTATTTGAAAGGCTGAGTGTTGCCCTCAAACACTTGCTAAAACTGCCTAGG
1841 GCAGGATTCATTAGGGCTTGCAGACAATGTCACCTAAATTGCTGAATGTACTCATTATAATATGATATCTGACAAAGGTA
1921 GTACAGCGTTTCTGAGTCATTTGGGACCAACTGCAGTGGTTGTTTAAAATGCTGGTTCCTGCACACAATTCTCTATCTAC
2001 TGAAGCACATCTGTTTTCTTTGTTTGTTTTGCTTTGCTTTTTGTTTTTAAAGTTTCCCCCAGTGATTCCAGTGCACCTGA
2081 AAAGTTGAGAACCACAGGCTTAGTGGTACGTTGGGGTTTCCCACGCTAGGCTGCATAGCATTATAACCTGGGAACGTTAA
2161 AAAAAATACAGACATTCTTGATTCTTAGTGTAGTTATGATGTGGATCCTACGTATTTTTTAAAAAACTCTCCAGATAATT
2241 TTGATGTCACGAGTCACTAGTATAGACTATCTATCTAGTGAGTTGTATTATAAGCGATGAAATACTTTAAAAGCTACCCA
2321 GTAACTCTTGGGATTAATTTTATGAAATAAATTCTGAGCTGCTGCTTTTGATATAGTCAGACTTAAGACTGAACCCCAGT
2401 AGACAGGCAATAGATATAGAATTCTGGTTAGCTAATTGAACTTTTGTGACCTGTTTAAAAACAAATCAAATTTATTGAAC
2481 AAATGACAAGGCACAAATACTTTCAGAATTGTATTTCAGTTTTGAAGATTTAAAAAAAATGTGAAAATAAATATATATTA
2561 GTATCCTTTATTTTAAAGTCAATTGTAAACCAGAAGTACTGTTATTTTGGTGATTAAAATCCAAAACTTTAGCTGTATTT
2641 CAGTAACAAAAACATACCTTACTAGACTGTGATGGCTCACACCTGTAATCCCAGTGCTTTGGGAGGCTGAGGTGGGAAGA
2721 TTCTTTGAGCCCAGGAGTTCAAGGCTGCAGTGAATTCTGATCGCACCACTGAACTCCAGCCCGTATGACAGAGTGAGACC
2801 CTGTTTCTAAAAACAAAACAAACAAACAAACAAACAACGTATCTTACTGACTAAACTGGAATGGAAATCTTATAATTAGT
2881 GTTGTATTTTTCTGCAAAATAGTGAATTGGTACTTGGGAGACTTCTGTTCTTTGTTGAAAAAAATTGCCTTTGTTTTGAA
2961 ATTATATCACCTGTGTTCTGAACTAAAATGATGGGAGTTCATTTTGTATTTACTTTGCAGTAAGTATCATGTAAATATGC
3041 AAATGTTGAATGTAATATAGATTGTGTCCTCATTGAGTTTTTGGGTGATACAGTTTATAAATATAACAATTATACACCCT
3121 CATACATTCGTCTGATTTTGAGCTTGTAAGATGAGAACTGCTTTTTACACATTTAATAAAAAAAGGTCTCTGAATTATCT
3201 GAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agaUUUAGAGUAUCACGGAAGa 5'
             |||   |||  ||||||| 
Target 5' ggaAAAGAGCAT-TTGCCTTCt 3'
1705 - 1725 150.00 -12.20
2
miRNA  3' agAUUUAGAGU--AUCACGGAAga 5'
            |:|| :| |  |||||||||  
Target 5' acTGAAGTTGAGGTAGTGCCTTat 3'
64 - 87 146.00 -15.70
3
miRNA  3' agauUUAGAGUAUC----ACGGAAGa 5'
              :||:|: |||    ||||||: 
Target 5' tgctGATTTTTTAGTAATTGCCTTTt 3'
394 - 419 140.00 -11.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
316229 274 ClinVar
316247 2816 ClinVar
316249 2816 ClinVar
COSM7689501 1 COSMIC
COSN25400573 6 COSMIC
COSN26639048 18 COSMIC
COSN31613428 23 COSMIC
COSN19735987 26 COSMIC
COSN25397603 45 COSMIC
COSN30537200 49 COSMIC
COSN30492019 56 COSMIC
COSN28185725 100 COSMIC
COSN30120355 112 COSMIC
COSN30500268 161 COSMIC
COSN31607309 186 COSMIC
COSN27749979 383 COSMIC
COSN23200687 488 COSMIC
COSN20969333 525 COSMIC
COSN20789804 999 COSMIC
COSN2493391 1035 COSMIC
COSN2455743 1196 COSMIC
COSN31597410 1558 COSMIC
COSN19660085 1618 COSMIC
COSN26556553 1641 COSMIC
COSN31483888 1712 COSMIC
COSN31517996 1760 COSMIC
COSN25273175 1880 COSMIC
COSN8389216 1892 COSMIC
COSN17182062 2019 COSMIC
COSN21937063 2109 COSMIC
COSN19363834 2301 COSMIC
COSN18834279 2569 COSMIC
COSN8744758 2783 COSMIC
COSN16687468 2935 COSMIC
COSN5754703 3038 COSMIC
COSN23082093 3107 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs376213388 14 dbSNP
rs539215480 25 dbSNP
rs1473774740 29 dbSNP
rs750850260 31 dbSNP
rs1414677297 32 dbSNP
rs767022751 36 dbSNP
rs547751780 37 dbSNP
rs751045828 43 dbSNP
rs1041545595 45 dbSNP
rs1430812045 46 dbSNP
rs559243676 50 dbSNP
rs1177587465 54 dbSNP
rs1481538390 60 dbSNP
rs930060902 69 dbSNP
rs1255318516 77 dbSNP
rs1210152948 78 dbSNP
rs1485700573 82 dbSNP
rs776956443 90 dbSNP
rs1281891953 91 dbSNP
rs1391268631 92 dbSNP
rs903024579 99 dbSNP
rs1315992788 103 dbSNP
rs1308068501 112 dbSNP
rs1225827517 116 dbSNP
rs1312778311 117 dbSNP
rs1045829199 118 dbSNP
rs1415976488 119 dbSNP
rs928594704 120 dbSNP
rs1377311481 123 dbSNP
rs937362225 137 dbSNP
rs575803192 138 dbSNP
rs1453256679 141 dbSNP
rs1346018856 143 dbSNP
rs1161645194 146 dbSNP
rs893402816 150 dbSNP
rs999905405 151 dbSNP
rs1032799465 152 dbSNP
rs1187099712 153 dbSNP
rs552495414 161 dbSNP
rs1012613576 162 dbSNP
rs181609658 166 dbSNP
rs1260933646 167 dbSNP
rs60561729 172 dbSNP
rs761390996 175 dbSNP
rs1333104398 177 dbSNP
rs1246611735 185 dbSNP
rs58509170 189 dbSNP
rs1234381823 190 dbSNP
rs1357927812 192 dbSNP
rs374825088 211 dbSNP
rs962890967 260 dbSNP
rs1290836690 266 dbSNP
rs1362825360 266 dbSNP
rs974120434 273 dbSNP
rs766946085 274 dbSNP
rs886051206 274 dbSNP
rs1265918888 289 dbSNP
rs1461845326 306 dbSNP
rs1488903860 313 dbSNP
rs921387461 325 dbSNP
rs1187235149 328 dbSNP
rs1261862751 334 dbSNP
rs1190057519 335 dbSNP
rs540286242 337 dbSNP
rs750021620 350 dbSNP
rs1415843725 357 dbSNP
rs1425776221 360 dbSNP
rs932628285 378 dbSNP
rs1368806658 379 dbSNP
rs953136156 385 dbSNP
rs986797519 392 dbSNP
rs1007238319 393 dbSNP
rs1016370010 402 dbSNP
rs1227409918 411 dbSNP
rs1308121535 415 dbSNP
rs1452722756 423 dbSNP
rs1297856731 445 dbSNP
rs878932922 452 dbSNP
rs912568636 455 dbSNP
rs1370550475 460 dbSNP
rs1362308742 462 dbSNP
rs1441346738 463 dbSNP
rs963305151 474 dbSNP
rs148133166 478 dbSNP
rs559998229 479 dbSNP
rs1166056402 480 dbSNP
rs1461445704 484 dbSNP
rs767418035 494 dbSNP
rs1041658232 503 dbSNP
rs903013753 505 dbSNP
rs1452109543 507 dbSNP
rs142031361 509 dbSNP
rs1193940710 514 dbSNP
rs1453666202 517 dbSNP
rs147241822 521 dbSNP
rs34982718 521 dbSNP
rs139057716 527 dbSNP
rs1340710259 545 dbSNP
rs531415743 549 dbSNP
rs763768844 552 dbSNP
rs1023944264 554 dbSNP
rs1347316747 561 dbSNP
rs937311883 580 dbSNP
rs186742956 584 dbSNP
rs1055786379 585 dbSNP
rs753529567 590 dbSNP
rs756881115 594 dbSNP
rs1004420155 595 dbSNP
rs1390688181 620 dbSNP
rs1355032381 624 dbSNP
rs1015833652 629 dbSNP
rs962838615 640 dbSNP
rs974237776 655 dbSNP
rs1041999271 659 dbSNP
rs1484305914 668 dbSNP
rs764795185 670 dbSNP
rs1181557284 682 dbSNP
rs997702015 684 dbSNP
rs1254574386 685 dbSNP
rs190265105 689 dbSNP
rs1051481206 700 dbSNP
rs888856945 704 dbSNP
rs912523398 706 dbSNP
rs533768473 712 dbSNP
rs1277485232 713 dbSNP
rs1420229160 718 dbSNP
rs1238052482 720 dbSNP
rs945397021 721 dbSNP
rs1290117710 722 dbSNP
rs1172981368 727 dbSNP
rs1374284164 730 dbSNP
rs552983749 743 dbSNP
rs143071340 749 dbSNP
rs1415765134 751 dbSNP
rs1382333434 753 dbSNP
rs554855570 754 dbSNP
rs1015925963 756 dbSNP
rs182455294 757 dbSNP
rs1157705324 767 dbSNP
rs572441477 768 dbSNP
rs766108879 772 dbSNP
rs1470703193 777 dbSNP
rs1467091476 784 dbSNP
rs963411784 790 dbSNP
rs924549112 791 dbSNP
rs993343027 793 dbSNP
rs376662009 794 dbSNP
rs1444195553 796 dbSNP
rs11638237 798 dbSNP
rs948463505 799 dbSNP
rs139121655 800 dbSNP
rs1205999268 804 dbSNP
rs1329569853 806 dbSNP
rs970513043 808 dbSNP
rs1269823162 809 dbSNP
rs1378161334 817 dbSNP
rs981924157 825 dbSNP
rs569389750 827 dbSNP
rs538080725 828 dbSNP
rs1314497686 832 dbSNP
rs958799878 833 dbSNP
rs992023062 835 dbSNP
rs906861680 839 dbSNP
rs1400963144 844 dbSNP
rs1250845224 856 dbSNP
rs758841965 860 dbSNP
rs1163236100 865 dbSNP
rs886051207 866 dbSNP
rs1461315510 868 dbSNP
rs1419200602 871 dbSNP
rs780560108 875 dbSNP
rs1474456283 877 dbSNP
rs1241640377 892 dbSNP
rs1194124679 908 dbSNP
rs185165634 910 dbSNP
rs116480545 919 dbSNP
rs1211593954 928 dbSNP
rs1028459526 930 dbSNP
rs1290492158 931 dbSNP
rs1229995973 936 dbSNP
rs954359182 939 dbSNP
rs1269101103 941 dbSNP
rs1190434351 942 dbSNP
rs1422931750 945 dbSNP
rs1008307929 958 dbSNP
rs1366918750 961 dbSNP
rs1323554687 968 dbSNP
rs1416112775 970 dbSNP
rs535393660 971 dbSNP
rs1176136437 983 dbSNP
rs933588570 984 dbSNP
rs1051918104 985 dbSNP
rs1408749323 988 dbSNP
rs747363373 989 dbSNP
rs540209371 990 dbSNP
rs1451490387 997 dbSNP
rs1251371378 1004 dbSNP
rs369031100 1014 dbSNP
rs1333007816 1015 dbSNP
rs553794162 1022 dbSNP
rs925292825 1025 dbSNP
rs1440577986 1027 dbSNP
rs755431255 1028 dbSNP
rs1228485760 1033 dbSNP
rs1370288036 1035 dbSNP
rs1037865521 1046 dbSNP
rs1018760806 1048 dbSNP
rs1233164855 1057 dbSNP
rs898796826 1076 dbSNP
rs1295676357 1079 dbSNP
rs993143986 1088 dbSNP
rs1316189250 1090 dbSNP
rs1026160318 1091 dbSNP
rs906448312 1095 dbSNP
rs1003439288 1098 dbSNP
rs1200742515 1099 dbSNP
rs1258887236 1100 dbSNP
rs576714069 1115 dbSNP
rs1220499107 1120 dbSNP
rs111954968 1125 dbSNP
rs375857871 1128 dbSNP
rs1173202184 1129 dbSNP
rs531504397 1132 dbSNP
rs1192707179 1133 dbSNP
rs915706769 1134 dbSNP
rs770140405 1136 dbSNP
rs1205841200 1137 dbSNP
rs886051208 1140 dbSNP
rs541673184 1144 dbSNP
rs948595430 1146 dbSNP
rs1045472786 1147 dbSNP
rs928411906 1151 dbSNP
rs1222423442 1154 dbSNP
rs939794455 1160 dbSNP
rs1289502469 1174 dbSNP
rs1412257532 1175 dbSNP
rs773434625 1180 dbSNP
rs1312362979 1189 dbSNP
rs561801897 1192 dbSNP
rs1321962974 1194 dbSNP
rs1157270512 1196 dbSNP
rs933555130 1199 dbSNP
rs1417058445 1207 dbSNP
rs1407028025 1214 dbSNP
rs988161221 1215 dbSNP
rs910688968 1218 dbSNP
rs898175689 1219 dbSNP
rs1186611990 1229 dbSNP
rs943538493 1237 dbSNP
rs1288852545 1238 dbSNP
rs754836575 1245 dbSNP
rs1339106688 1246 dbSNP
rs1220471901 1247 dbSNP
rs1316668618 1250 dbSNP
rs1269184008 1251 dbSNP
rs1037434162 1254 dbSNP
rs1334418453 1255 dbSNP
rs1396665652 1260 dbSNP
rs889951805 1260 dbSNP
rs1159651449 1269 dbSNP
rs1287466228 1269 dbSNP
rs1387574597 1269 dbSNP
rs1453361600 1269 dbSNP
rs527442888 1277 dbSNP
rs866791651 1278 dbSNP
rs1222048695 1288 dbSNP
rs547406897 1291 dbSNP
rs1257711160 1298 dbSNP
rs1487285822 1302 dbSNP
rs999624209 1307 dbSNP
rs1047369958 1310 dbSNP
rs570422507 1311 dbSNP
rs1248957559 1328 dbSNP
rs1285987022 1332 dbSNP
rs34975793 1339 dbSNP
rs906248277 1339 dbSNP
rs1423777545 1349 dbSNP
rs749335400 1360 dbSNP
rs958026567 1363 dbSNP
rs1472242073 1373 dbSNP
rs1273082892 1374 dbSNP
rs990076263 1380 dbSNP
rs915844618 1382 dbSNP
rs1161162476 1391 dbSNP
rs1293554078 1398 dbSNP
rs1381807678 1399 dbSNP
rs556667567 1403 dbSNP
rs1322883117 1410 dbSNP
rs1406258399 1420 dbSNP
rs374758234 1435 dbSNP
rs369642116 1446 dbSNP
rs552878862 1447 dbSNP
rs1458377665 1455 dbSNP
rs775459956 1461 dbSNP
rs1022164927 1467 dbSNP
rs569468490 1469 dbSNP
rs998978361 1471 dbSNP
rs1031667731 1473 dbSNP
rs1390384536 1478 dbSNP
rs1190163467 1493 dbSNP
rs1036745110 1506 dbSNP
rs954703060 1508 dbSNP
rs919592432 1510 dbSNP
rs931005881 1511 dbSNP
rs1049995071 1514 dbSNP
rs890054937 1527 dbSNP
rs1489762864 1528 dbSNP
rs1249622631 1533 dbSNP
rs1342459854 1534 dbSNP
rs1340019929 1538 dbSNP
rs944318534 1541 dbSNP
rs1446076836 1542 dbSNP
rs756637770 1562 dbSNP
rs1300072374 1566 dbSNP
rs1232424603 1567 dbSNP
rs538421035 1570 dbSNP
rs868774783 1572 dbSNP
rs1322664944 1580 dbSNP
rs1387208556 1586 dbSNP
rs910815729 1587 dbSNP
rs1296436362 1588 dbSNP
rs189585232 1589 dbSNP
rs1370678813 1592 dbSNP
rs796103023 1597 dbSNP
rs1032467173 1600 dbSNP
rs575222577 1607 dbSNP
rs893798977 1612 dbSNP
rs376038384 1613 dbSNP
rs1228634235 1615 dbSNP
rs148686136 1618 dbSNP
rs920786343 1623 dbSNP
rs1205141021 1640 dbSNP
rs970353576 1641 dbSNP
rs929055961 1644 dbSNP
rs1047504891 1651 dbSNP
rs981392938 1658 dbSNP
rs927593555 1675 dbSNP
rs763926257 1681 dbSNP
rs1035450132 1684 dbSNP
rs1055022420 1686 dbSNP
rs7181436 1707 dbSNP
rs1332656561 1713 dbSNP
rs1184792665 1716 dbSNP
rs1409168112 1718 dbSNP
rs1238776609 1720 dbSNP
rs1350513775 1724 dbSNP
rs1309330265 1731 dbSNP
rs1432411038 1758 dbSNP
rs1401048822 1760 dbSNP
rs1010845212 1765 dbSNP
rs919705086 1791 dbSNP
rs930973965 1812 dbSNP
rs1178356709 1823 dbSNP
rs1378902851 1827 dbSNP
rs1182041830 1829 dbSNP
rs1473219447 1833 dbSNP
rs1422060821 1843 dbSNP
rs1159847797 1850 dbSNP
rs761458667 1856 dbSNP
rs1253980009 1862 dbSNP
rs1402138744 1868 dbSNP
rs1412767334 1876 dbSNP
rs1043574429 1895 dbSNP
rs1441970960 1897 dbSNP
rs1279569461 1898 dbSNP
rs902380128 1899 dbSNP
rs1189671004 1903 dbSNP
rs998904632 1905 dbSNP
rs1031765737 1914 dbSNP
rs954711566 1916 dbSNP
rs1308220606 1917 dbSNP
rs1009328998 1918 dbSNP
rs944254074 1926 dbSNP
rs1242207873 1929 dbSNP
rs1041321381 1933 dbSNP
rs1412370406 1945 dbSNP
rs1339416754 1946 dbSNP
rs1017635386 1947 dbSNP
rs965313565 1948 dbSNP
rs973719955 1953 dbSNP
rs764811629 1958 dbSNP
rs1397452777 1959 dbSNP
rs1344219484 1962 dbSNP
rs749922579 1980 dbSNP
rs1458155087 1982 dbSNP
rs1198187024 1983 dbSNP
rs935515889 1987 dbSNP
rs1163459541 1988 dbSNP
rs983139744 1989 dbSNP
rs1280149651 1992 dbSNP
rs1472489155 1998 dbSNP
rs142235920 2000 dbSNP
rs183928015 2008 dbSNP
rs1445506964 2010 dbSNP
rs893860100 2014 dbSNP
rs1236720828 2015 dbSNP
rs1012346282 2019 dbSNP
rs1329680871 2019 dbSNP
rs1441870273 2020 dbSNP
rs188876635 2023 dbSNP
rs1000760693 2043 dbSNP
rs146657000 2044 dbSNP
rs1324313639 2049 dbSNP
rs1035606852 2054 dbSNP
rs1174368308 2071 dbSNP
rs576287557 2073 dbSNP
rs916285898 2078 dbSNP
rs946616870 2099 dbSNP
rs1414551117 2110 dbSNP
rs193096209 2111 dbSNP
rs1474506915 2112 dbSNP
rs1389770682 2116 dbSNP
rs879518950 2117 dbSNP
rs1402746983 2125 dbSNP
rs1448630944 2126 dbSNP
rs961181093 2128 dbSNP
rs902309741 2138 dbSNP
rs1219227566 2140 dbSNP
rs1450979508 2145 dbSNP
rs561775048 2146 dbSNP
rs1229522167 2152 dbSNP
rs1339511815 2153 dbSNP
rs1053168339 2156 dbSNP
rs1228718198 2159 dbSNP
rs1231037080 2159 dbSNP
rs1273458444 2161 dbSNP
rs1436302565 2163 dbSNP
rs1350969765 2168 dbSNP
rs1276107511 2171 dbSNP
rs1323701489 2175 dbSNP
rs1370073994 2185 dbSNP
rs527490948 2190 dbSNP
rs1197479302 2199 dbSNP
rs541084009 2202 dbSNP
rs1255691912 2205 dbSNP
rs1451591240 2206 dbSNP
rs7183382 2210 dbSNP
rs1189257777 2212 dbSNP
rs1026791726 2213 dbSNP
rs1223726584 2215 dbSNP
rs1481761505 2221 dbSNP
rs952537891 2222 dbSNP
rs1343862942 2227 dbSNP
rs532924446 2229 dbSNP
rs1009007553 2234 dbSNP
rs1018019947 2236 dbSNP
rs1368807097 2237 dbSNP
rs549838962 2251 dbSNP
rs995016659 2252 dbSNP
rs910839992 2270 dbSNP
rs1027879950 2272 dbSNP
rs1308731809 2273 dbSNP
rs1450360724 2274 dbSNP
rs943757567 2279 dbSNP
rs1175678860 2283 dbSNP
rs1413665669 2283 dbSNP
rs1425645276 2291 dbSNP
rs140243429 2296 dbSNP
rs983570317 2297 dbSNP
rs1250341314 2304 dbSNP
rs879008991 2307 dbSNP
rs1182262353 2315 dbSNP
rs1417635068 2329 dbSNP
rs1483783050 2330 dbSNP
rs531957344 2331 dbSNP
rs924214053 2363 dbSNP
rs1168627054 2366 dbSNP
rs1209036432 2375 dbSNP
rs935589466 2379 dbSNP
rs1281200410 2381 dbSNP
rs1227035784 2383 dbSNP
rs1329086954 2390 dbSNP
rs1276628761 2392 dbSNP
rs1289603949 2397 dbSNP
rs1425998546 2399 dbSNP
rs1466354071 2401 dbSNP
rs1053929992 2403 dbSNP
rs13376 2405 dbSNP
rs1449055724 2410 dbSNP
rs948098050 2418 dbSNP
rs1455505318 2422 dbSNP
rs1384997265 2430 dbSNP
rs960732113 2433 dbSNP
rs183813503 2436 dbSNP
rs755524457 2437 dbSNP
rs1473269836 2447 dbSNP
rs906521228 2451 dbSNP
rs748461591 2460 dbSNP
rs1003526598 2467 dbSNP
rs946404994 2470 dbSNP
rs1056958185 2471 dbSNP
rs568517979 2475 dbSNP
rs1464777394 2487 dbSNP
rs923868881 2495 dbSNP
rs564382292 2510 dbSNP
rs1312107885 2519 dbSNP
rs1229037599 2529 dbSNP
rs1027198839 2532 dbSNP
rs773617591 2540 dbSNP
rs1432607556 2552 dbSNP
rs1050899749 2561 dbSNP
rs778005816 2564 dbSNP
rs1345547860 2565 dbSNP
rs944779796 2571 dbSNP
rs1265221070 2583 dbSNP
rs886051209 2587 dbSNP
rs1018056921 2591 dbSNP
rs1212016811 2597 dbSNP
rs1186321459 2609 dbSNP
rs1464693769 2617 dbSNP
rs749361490 2622 dbSNP
rs900463217 2659 dbSNP
rs1211059693 2665 dbSNP
rs1487793585 2678 dbSNP
rs994810049 2679 dbSNP
rs1265436224 2683 dbSNP
rs965399575 2684 dbSNP
rs976393339 2709 dbSNP
rs1227981203 2722 dbSNP
rs923615242 2724 dbSNP
rs1298080156 2727 dbSNP
rs1383787280 2750 dbSNP
rs1027639908 2753 dbSNP
rs547458131 2763 dbSNP
rs573029090 2764 dbSNP
rs1035588334 2765 dbSNP
rs1478250916 2768 dbSNP
rs1164422213 2776 dbSNP
rs960911854 2781 dbSNP
rs990934400 2782 dbSNP
rs540456269 2783 dbSNP
rs967679568 2784 dbSNP
rs1431856583 2786 dbSNP
rs989735619 2789 dbSNP
rs979082448 2790 dbSNP
rs766882061 2793 dbSNP
rs1489483231 2795 dbSNP
rs1272601713 2797 dbSNP
rs1204632544 2800 dbSNP
rs948282441 2815 dbSNP
rs1293102203 2816 dbSNP
rs1387298072 2816 dbSNP
rs188301800 2816 dbSNP
rs376870196 2816 dbSNP
rs530123816 2816 dbSNP
rs886051210 2816 dbSNP
rs1164817702 2817 dbSNP
rs757133275 2820 dbSNP
rs1399382583 2836 dbSNP
rs539431808 2838 dbSNP
rs556331643 2839 dbSNP
rs374571585 2840 dbSNP
rs939454699 2842 dbSNP
rs1382423384 2848 dbSNP
rs1311493673 2853 dbSNP
rs368743002 2874 dbSNP
rs1291394384 2876 dbSNP
rs747025877 2880 dbSNP
rs1247385177 2886 dbSNP
rs191880341 2896 dbSNP
rs912351602 2904 dbSNP
rs1353585210 2915 dbSNP
rs1215132272 2920 dbSNP
rs1342548118 2922 dbSNP
rs942552114 2931 dbSNP
rs1039499371 2944 dbSNP
rs1233795568 2945 dbSNP
rs922024895 2948 dbSNP
rs555638363 2949 dbSNP
rs1286440966 2960 dbSNP
rs888268043 2974 dbSNP
rs1006752445 2977 dbSNP
rs1330424273 2988 dbSNP
rs1018543496 2998 dbSNP
rs1181361083 3005 dbSNP
rs774771057 3009 dbSNP
rs1471200238 3019 dbSNP
rs1049047867 3021 dbSNP
rs886473388 3025 dbSNP
rs965097618 3033 dbSNP
rs997943622 3035 dbSNP
rs768513452 3043 dbSNP
rs1365623413 3046 dbSNP
rs1005055657 3056 dbSNP
rs572243953 3058 dbSNP
rs541245642 3059 dbSNP
rs1385678196 3060 dbSNP
rs564156372 3061 dbSNP
rs1204042032 3063 dbSNP
rs896621986 3072 dbSNP
rs577843179 3074 dbSNP
rs1012431340 3076 dbSNP
rs1362390460 3083 dbSNP
rs1350705432 3084 dbSNP
rs1453766669 3088 dbSNP
rs989724136 3092 dbSNP
rs1242078111 3105 dbSNP
rs1339506319 3110 dbSNP
rs1024254105 3114 dbSNP
rs1301786970 3117 dbSNP
rs915526872 3122 dbSNP
rs543400627 3130 dbSNP
rs1000658378 3131 dbSNP
rs1030665091 3154 dbSNP
rs1458238472 3158 dbSNP
rs1387139507 3165 dbSNP
rs956368658 3167 dbSNP
rs939402402 3169 dbSNP
rs1238453118 3172 dbSNP
rs1369246443 3174 dbSNP
rs563175953 3175 dbSNP
rs184061558 3177 dbSNP
rs1446188257 3184 dbSNP
rs1245987129 3185 dbSNP
rs548549836 3185 dbSNP
rs1312019782 3187 dbSNP
rs912500200 3191 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agaUUUAGAGUAUCACGGAAga 5'
             |||   |||  ||||||  
Target 5' --aAAAGAGCAU-UUGCCUU-- 3'
1 - 17
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000220531.3 | 3UTR | AAAAGAGCAUUUGCCUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
100 hsa-miR-605-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061339 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT061584 BTG2 BTG anti-proliferation factor 2 2 6
MIRT076140 WDR81 WD repeat domain 81 2 2
MIRT079361 CCDC137 coiled-coil domain containing 137 2 2
MIRT079547 VAMP3 vesicle associated membrane protein 3 2 2
MIRT096242 CANX calnexin 2 2
MIRT243877 G3BP1 G3BP stress granule assembly factor 1 2 4
MIRT249186 AKIRIN1 akirin 1 2 8
MIRT273604 SP1 Sp1 transcription factor 2 2
MIRT316766 FOXC1 forkhead box C1 2 4
MIRT322410 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT370117 TRIB3 tribbles pseudokinase 3 2 2
MIRT392725 UBN2 ubinuclein 2 2 2
MIRT406910 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT407440 CTDSP1 CTD small phosphatase 1 2 2
MIRT441887 RD3 retinal degeneration 3 2 4
MIRT444979 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT445241 FOXD4 forkhead box D4 2 2
MIRT445500 FOXD4L5 forkhead box D4 like 5 2 2
MIRT445503 FOXD4L4 forkhead box D4 like 4 2 2
MIRT447025 FOXD4L1 forkhead box D4 like 1 2 2
MIRT447743 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT448761 HDX highly divergent homeobox 2 2
MIRT450003 HAX1 HCLS1 associated protein X-1 2 2
MIRT452830 FAM131B family with sequence similarity 131 member B 2 2
MIRT452872 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT453506 ARRB1 arrestin beta 1 2 2
MIRT454169 HIST1H2BK histone cluster 1 H2B family member k 2 2
MIRT458742 CES2 carboxylesterase 2 2 2
MIRT459166 HSPA6 heat shock protein family A (Hsp70) member 6 2 21
MIRT460246 IL17RB interleukin 17 receptor B 2 4
MIRT460514 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT460698 RNF157 ring finger protein 157 2 2
MIRT461481 METTL1 methyltransferase like 1 2 2
MIRT462617 C20orf27 chromosome 20 open reading frame 27 2 4
MIRT463233 ZNF131 zinc finger protein 131 2 2
MIRT465699 TNPO2 transportin 2 2 8
MIRT466304 TIMM22 translocase of inner mitochondrial membrane 22 2 2
MIRT468957 RPS14 ribosomal protein S14 2 6
MIRT469571 RARA retinoic acid receptor alpha 2 2
MIRT469685 RAB5B RAB5B, member RAS oncogene family 2 2
MIRT470800 PMP22 peripheral myelin protein 22 2 2
MIRT471649 PANK2 pantothenate kinase 2 2 4
MIRT471722 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT472281 NFIB nuclear factor I B 2 4
MIRT473680 MAPKBP1 mitogen-activated protein kinase binding protein 1 2 2
MIRT475859 H6PD hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase 2 2
MIRT477326 EPHA2 EPH receptor A2 2 2
MIRT477831 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT478572 CTNND1 catenin delta 1 2 4
MIRT479634 CD81 CD81 molecule 2 2
MIRT481950 ANKRD11 ankyrin repeat domain 11 2 2
MIRT483696 ZNF74 zinc finger protein 74 2 6
MIRT488798 MALT1 MALT1 paracaspase 2 2
MIRT489066 STARD3 StAR related lipid transfer domain containing 3 2 2
MIRT492533 PSMD11 proteasome 26S subunit, non-ATPase 11 2 2
MIRT492857 NRARP NOTCH regulated ankyrin repeat protein 2 2
MIRT496793 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT500122 ZNF106 zinc finger protein 106 2 4
MIRT505359 TMEM167A transmembrane protein 167A 2 2
MIRT506786 KLHL15 kelch like family member 15 2 6
MIRT510692 SRM spermidine synthase 2 6
MIRT515841 CEP104 centrosomal protein 104 2 4
MIRT516448 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT528855 PKP1 plakophilin 1 2 2
MIRT533848 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT539025 ATXN7L1 ataxin 7 like 1 2 4
MIRT542872 NR6A1 nuclear receptor subfamily 6 group A member 1 2 2
MIRT546543 SATB2 SATB homeobox 2 2 2
MIRT554114 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT560569 ZNF460 zinc finger protein 460 2 2
MIRT560796 EPM2AIP1 EPM2A interacting protein 1 2 2
MIRT562836 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT563109 IFRD2 interferon related developmental regulator 2 2 2
MIRT564177 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT564283 ASB1 ankyrin repeat and SOCS box containing 1 2 2
MIRT564350 USP22 ubiquitin specific peptidase 22 2 2
MIRT565279 TNFRSF21 TNF receptor superfamily member 21 2 2
MIRT565338 TMEM104 transmembrane protein 104 2 2
MIRT565905 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT567108 ITGB1 integrin subunit beta 1 2 2
MIRT567601 FANCF Fanconi anemia complementation group F 2 2
MIRT567779 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT568075 CENPQ centromere protein Q 2 2
MIRT624304 COL12A1 collagen type XII alpha 1 chain 2 2
MIRT644395 CDKL1 cyclin dependent kinase like 1 2 2
MIRT661547 ZNF674 zinc finger protein 674 2 4
MIRT670949 IRAK3 interleukin 1 receptor associated kinase 3 2 2
MIRT672951 AKAP5 A-kinase anchoring protein 5 2 2
MIRT697426 ZFP36 ZFP36 ring finger protein 2 2
MIRT700793 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT702657 ITGA3 integrin subunit alpha 3 2 2
MIRT708945 FZR1 fizzy and cell division cycle 20 related 1 2 2
MIRT713657 PLCE1 phospholipase C epsilon 1 2 2
MIRT719239 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719951 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT722048 HLA-E major histocompatibility complex, class I, E 2 2
MIRT722201 URM1 ubiquitin related modifier 1 2 2
MIRT724790 C1D C1D nuclear receptor corepressor 2 2
MIRT734347 CYP2B6 cytochrome P450 family 2 subfamily B member 6 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-605 Anthranilamide-pyrazolo[1,5-a]pyrimidine NULL NULL Quantitative real-time PCR neuroblastoma cells 23992861 2013 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-605 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-605 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-605 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-605 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-605-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)

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