pre-miRNA Information
pre-miRNA hsa-mir-4640   
Genomic Coordinates chr6: 30890883 - 30890972
Description Homo sapiens miR-4640 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4640-5p
Sequence 9| UGGGCCAGGGAGCAGCUGGUGGG |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1392105945 7 dbSNP
rs939712790 9 dbSNP
rs762825841 15 dbSNP
rs71552023 20 dbSNP
rs1305909531 21 dbSNP
rs750017220 21 dbSNP
rs1375436057 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B32FZJ miR-4640 Safety Biomarker (SAF) Clinical/Experimental Data Expression lower Urine Quantitative polymerase chain reaction
Gene Information
Gene Symbol SAMD4A   
Synonyms SAMD4, SMAUG, SMAUG1, SMG, SMGA
Description sterile alpha motif domain containing 4A
Transcript NM_001161576   
Other Transcripts NM_001161577 , NM_015589   
Expression
Putative miRNA Targets on SAMD4A
3'UTR of SAMD4A
(miRNA target sites are highlighted)
>SAMD4A|NM_001161576|3'UTR
   1 AAGCTGAAGACGAGAGTGACCGCGCTGGCCGTGAAATCGACTGCTGCGGGTCCAGTGTCCGCCATCTTCAGGGTTGCACA
  81 GAATCCTCCAAGATACTTTGCAGCCTTTTTTCCCCCTGGTCCCTCTCCCGTTTTGATTTTGTGAGAGCGTAGGTCATCCT
 161 CGTAAACATATCAGTAGACCTGGGGTTGGTTATTTTGTCATTTGTTTCTGTCATGGGATGGTTTGGTGTGTGGGGTGGGG
 241 AGGGGTCTCTAGGGAATTATGAGACTGGGAGGGGGGTGGAGGGAATGCAGGTAGCTCTCTGGATGGAACGGGGACAGGGG
 321 AAAGAGTACTGCCATGAAAGAGATAGGAGACACATAAGAGGACAGCAGAAGCCCTGGCCCTGGGGAGGCTTCTCGGAAGG
 401 CCTGGCTTCACAGGCAGGCCACAGAAGGATATCGCGGGCACGTGCACCCAAAGCAAGATAGTGGCTTCCCTTTTATATCC
 481 AATCTAATCCTGATTGGATGTCCCTGAGGCCCCTGCTGGAAACAGCCATAGGAGAGGGCCCATGGCAGTAGGGGAAAGAA
 561 GGAAGAAATTCCCTGCAACAAAACTTCAGCTAAACTTTGATTTGTGTATTGTTTACATAATAATTTTAAAGGGTACATAA
 641 TGTGTAAAGAGTTTGGATAGAACCTCTCTTCATACTATGGTTTTCGTAAAGGATCTGTTGTTGTTACGGATTCATTTTTT
 721 CCCTCTATTTTTATAAGAGCAGCAGAGTTGTCTTCTCAAAACGGCTGCCAAGCTCTGCTTCTTGGGAAGATGGATGCAGT
 801 CATGTAGGCCTGAGCTGTCCGTCTTTCACCGTTAGGTGGGAGGAGCGTATGGGTGGACTTGAAGGACATGGACGTGGCTG
 881 GAATGAGCACAGCATTGGGTGAGCGCACAAGGATGAGGACATCATGTGATCAGTTATGGGTTTGCTCGCAGGGCACCCAG
 961 AGATTCTCAAAGAATCCTGCAGCCTCTTTCTGTGCTGGATTTGCTTGTCACGGAGAGGCCTCCCTCCCTTTCCACCCCAC
1041 CCATGGGGCATTATCCTGTCACTCCCAGCCTTGCTCCACACACACACAGGTGGGTACAAGTTCCACTGGAGGAGAAAAGG
1121 CAAGGATGGACTTTTTCCCCTTGTGAGAGGTTTGATACCCAGAAAATGAGCTCAAAACCTTTACATTAGGGTTGCTTGTA
1201 GGAACTGGAGCCTGGAGGCTGCATCTACTTCACCTGTCACTGCTGAGGGAGAGGAGGGGAGAAAGGCCCAGCAACAGCGT
1281 ACAGAGGGGTCAGTCAGCAAGTCCAGAGAGCACATGCAGGGAGATGTTTGGCCCACACCGCACAGCCCCGCCATCTCCAG
1361 TGGGCGATGAAAGATGTAGGAAAGGTTGATTTCAAGATGGAAATGACAGCGCTATCCGCACAGTATGAATTAGGGATTTG
1441 CTGTGTTAGTTGATTTATCCATCCACACAGAGGGGAGGAAAAAGACACTCGTTACTTGGTGGGAGATTGAGAAACTGTGG
1521 TACCTACCACAAAGTAATAGCTCTGTTTATGAAGGGCAAGAAAGGCTACATTTCAGAATTTGACACAGTGGAGGGTATTA
1601 GAGGAAATCAAAGAGGAGTTGTGTGGAAAATCAGGTTGTGTAAATGAAGGTATGAATGCTCAGCCAGAGGCAAGATCAGG
1681 GAGATGGTACAAGGCCTGTTTGTTACATGGATGAGTCGGGTGCCTGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
1761 TGTGAAGTCAGAGTTGAAATTCAGAAGATCAGACTATGGAAATCACTGCCCTTTTTTTTTTAAAAGCTAATGAACTACAT
1841 ACAGACCTAAAAGGCCTTAATGAAATCCGAACAATTTTCTTTTACTTTCAAGATCAAAAACATGCACCCAACCCAGCCTT
1921 GGATGCCACCACCAGGTTTTTGAAGCCCTTTTGAGTCTAAGAAGGTGAGAACAATGTAACCATAGAAAGCCTTTCGTGAG
2001 CAGAGAAGGCTTGAATCCACAATTTCATTCGCTGAATTAAAAAAAAAAGGTTCAGACCTCTCCTTGGGTGACTAAGTTCT
2081 AAAGATGCAAATCCATGTGCAGAAAGAGATGGCATTTTTTAGTTGATTATTTTTAACCAAGTGCCATTAACATTCATCCC
2161 CCACATCCCTTTTCTAAACAAGCTTAGTGTTACTTGGGGAATGTGTTGGGATGGACGATCACATGTAAGGCAGGAAGAAT
2241 AGGTCAAAGGTTGAAGGCCAAAGGTAAGACCAGAGGGTTTGCGAATGTGGGTTTGTAGGATACTGAGAAAGTGAATAAAG
2321 AGGAGAAAAAACCATGGTATTACACATCTTGCTGAGAAAGGAAAGCATTCGGATCTGCTGCAAAAACACATATATCCATA
2401 AAGACTCATGTTATTCAGAAAACAGATTGTGAACACAATCACATTCGCATGAATCCTTTAAAAGGAAGAAGACCTTAAAG
2481 TATCTGCAAATCTGAATTTCTATTTATTCCTTCACTGAATATAGAAACAATGGTTATCTGATTATTAGAGATATTATTTT
2561 GGATATGTTACTTATTAACTTGCTATGGCTGGTAACCATGATAAAGTCTGTTATTAATAACAACATAATTCTTTTTTTAA
2641 AGAAGAAAAGCTTATTTTTCATTGACAGTGTATAGATTTATCTACTTAGTTGTGTTTTGCTATTAGTGTTTTAATTTTTT
2721 TTTTAAGTTGAGTGTTTGATAAATTTTAAGACCCTGTCCCCACCTTGTTTTGAGTCCTGTGTTGACTACAGGTATATAGC
2801 TCAATTTAAAAATCCTAAAGCAAAAGAATTTTATTTATAAAAGAATCAAACAGTTGCATGCATGAGGCTGTGAAGTCAGA
2881 TATTTAGTAATAAAAGCAGCAGTGCCTTTTTTTGTATTTACCCATTGACCCCCACCAAATGCAACTGTTTTATATTAAGA
2961 AAATAGTAACAATTTTAAAATCTCAGAGTAAAATCTATTTCACTACATGCTTTTCCCCCCTTGTTCTGATTTAAGCAGTG
3041 TGTACTTGGCATCTCTACATTGTCCTAGGGACAGTGGTGTTCTACAATATTATCATGTATGATGTTTTATTGGTGCTTTT
3121 TATTCATAGTGGCTTCTTACCAGAAACAGTAGGAAGAAACACATGAACTGTGTACAAGACATGAAACATTGCTGCTGATA
3201 TGTTGTTTTTTCACATGCTTTTGAGTTTTCACTTTTTAAACGAGAGCCAGCAAGCAAAATAGATGTGGCTGGGTCTGCCT
3281 GTCCGGGCGGCTCTTTGCACCGAGCTCTCAAATCCTGTGTATTGAGGGTTCCTTTTTGGTACTCAGGATTGGAGCTACAG
3361 CTGGGCCCCCCTCTCTCCCATTCGTTTGAAGAGACACTGAGGGAAACAAGGGTTTCTTTTGAGGTGTCCTTGGCTGCCTT
3441 TTACGGGATGGGAGCCTTCTCCGGATCTTTTGTTCTTCTGCACCTCTTGTAGCTACTGCCGGTGCAAGGTTGTAGATGTT
3521 ATTCCCCAGGAGCCTGGGCTTGGGGGCTGAGCTGGGCTGAATGCAAAAGCATGCAACCAGAAGGCGGGCAAGGGGAGGAA
3601 AAGCAGGCCTGGCCTCATTGGTCCCCTGGAGATGTCTGTAGCAGTCAGCTCCAGCTTGGGCCTGGGGAAGCAGCCTGACC
3681 AAGGCGCTCAGGTGTGCCTGTTACAAGAAGAACCTGCAGAAGGATAATTTGCACATGGAGCTGTGATAACACTAATGTTG
3761 ATTTTTTTTTTTTTTACAAGTCATCAGAGATGTTTGCAAAGTGAGTTTTATTTTTTTGTAATTCCTTTATCTTTACTTAA
3841 AGGTGAATGTGTATTCCTCTGGGAGGAATAGGAAGAAAACAGGAATGTTAATAATGTCGAACAGAAAACTTCCTCCCTTA
3921 TTAATATATAATCCTCATGTATTTATGCCTAATGTAAGCTGACTTTTAAAAAGCTTTCTTTTGTTGCATGCCCTGTGCAG
4001 GCATCTGTATTGTACATGCATGCCTTTCGTCCTGTTTTCCTGTATAAAGTTAGTGAACAAAGAAATATTTTTGCCTAGTT
4081 CATGTTGCCAAGCAATGCATATTTTTTAAATTTGTCATATATGGAAAGAGCATGTTTGTTACATGTAAAAGCTTTACTGA
4161 TATACAGATATACTAATGTTTGAAGATGCTGTTCTTTGCAAGTGTACAGTTTTCAAATGTTGTTACCAGTGAAACACCCT
4241 TGTGGTTTAAACTTGCTACAATGTATTTATTATTCATTTCCTCCCATGTAACTAAGAATCATGGCTATATTTCATATCAA
4321 CGTTATATTGAAAGTGAAGGGAAATGATTAATACAAGGTTTTGTAACACTGAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggGUGGUCGACGAGGGACCGGGu 5'
            || |||  |  ||||||||| 
Target 5' gaCAGCAGAAG--CCCTGGCCCt 3'
361 - 381 161.00 -27.00
2
miRNA  3' gggugGUCG-----ACGAGGGACCGGGu 5'
               ||||     | | ||||||:|| 
Target 5' ctttgCAGCCTTTTTTCCCCCTGGTCCc 3'
96 - 123 142.00 -20.00
3
miRNA  3' ggGUGGUCGACGAGGGACCGGGu 5'
            ::| :|  | | ::|||||| 
Target 5' caTGCAGGGAGATGTTTGGCCCa 3'
1313 - 1335 133.00 -18.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN24313362 7 COSMIC
COSN26993727 13 COSMIC
COSN30146938 15 COSMIC
COSN30115790 32 COSMIC
COSN26993725 39 COSMIC
COSN19710965 40 COSMIC
COSN30514676 56 COSMIC
COSN30492443 61 COSMIC
COSN30538403 93 COSMIC
COSN31559885 101 COSMIC
COSN31496416 114 COSMIC
COSN18737826 117 COSMIC
COSN30653131 127 COSMIC
COSN24399635 149 COSMIC
COSN30172627 216 COSMIC
COSN25716271 267 COSMIC
COSN31570466 330 COSMIC
COSN24709178 423 COSMIC
COSN17595544 493 COSMIC
COSN22033385 686 COSMIC
COSN8845193 956 COSMIC
COSN23326256 1013 COSMIC
COSN26126974 1280 COSMIC
COSN16741313 1415 COSMIC
COSN24653852 1596 COSMIC
COSN20111300 1754 COSMIC
COSN23250995 1764 COSMIC
COSN18757230 1765 COSMIC
COSN27430842 1765 COSMIC
COSN15661726 1822 COSMIC
COSN27715480 1823 COSMIC
COSN27587010 2049 COSMIC
COSN19255324 2056 COSMIC
COSN21958911 2161 COSMIC
COSN22385103 2332 COSMIC
COSN19476830 2998 COSMIC
COSN1654184 3028 COSMIC
COSN8845194 3456 COSMIC
COSN17651359 3612 COSMIC
COSN19577573 3698 COSMIC
COSN24006710 3712 COSMIC
COSN20111302 3776 COSMIC
COSN27723970 3777 COSMIC
COSN1169024 4349 COSMIC
rs11431 12 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs747578073 2 dbSNP
rs11431 12 dbSNP
rs1239184325 13 dbSNP
rs370559344 22 dbSNP
rs201226426 23 dbSNP
rs1161545208 24 dbSNP
rs375012808 25 dbSNP
rs367679236 31 dbSNP
rs199523703 32 dbSNP
rs1404118284 35 dbSNP
rs537955352 36 dbSNP
rs757264927 39 dbSNP
rs750575698 40 dbSNP
rs1229631373 45 dbSNP
rs1304251680 47 dbSNP
rs1334093028 47 dbSNP
rs375924063 48 dbSNP
rs556191025 49 dbSNP
rs1257137913 51 dbSNP
rs780966526 53 dbSNP
rs903189716 55 dbSNP
rs577986242 61 dbSNP
rs189811410 62 dbSNP
rs1483293825 75 dbSNP
rs149729986 79 dbSNP
rs1207965696 97 dbSNP
rs910225995 100 dbSNP
rs1258515360 105 dbSNP
rs996746532 107 dbSNP
rs1317585756 110 dbSNP
rs868042061 114 dbSNP
rs1387919309 117 dbSNP
rs1461118381 118 dbSNP
rs1167732445 128 dbSNP
rs1283629147 129 dbSNP
rs1446509857 130 dbSNP
rs943114226 141 dbSNP
rs572677708 146 dbSNP
rs1028197178 147 dbSNP
rs975831471 149 dbSNP
rs543339242 150 dbSNP
rs945250105 151 dbSNP
rs529247944 155 dbSNP
rs759198146 160 dbSNP
rs184097143 162 dbSNP
rs961089271 163 dbSNP
rs576669933 169 dbSNP
rs936598983 172 dbSNP
rs767106315 175 dbSNP
rs1013659147 176 dbSNP
rs1224085540 177 dbSNP
rs1046552685 180 dbSNP
rs1382213149 181 dbSNP
rs897326568 182 dbSNP
rs1354767931 184 dbSNP
rs113218852 185 dbSNP
rs1310634747 193 dbSNP
rs1446621920 195 dbSNP
rs994300270 196 dbSNP
rs1027165303 198 dbSNP
rs1458132098 201 dbSNP
rs1348919908 207 dbSNP
rs1226918451 210 dbSNP
rs1270574267 214 dbSNP
rs544329226 220 dbSNP
rs1420984940 221 dbSNP
rs1380309190 229 dbSNP
rs1177952458 230 dbSNP
rs1437699038 231 dbSNP
rs1269244546 232 dbSNP
rs1191530102 237 dbSNP
rs919578863 238 dbSNP
rs1246340549 242 dbSNP
rs1219563690 250 dbSNP
rs1355962155 252 dbSNP
rs1286767067 260 dbSNP
rs549250231 262 dbSNP
rs1198697104 267 dbSNP
rs1303929618 271 dbSNP
rs770033727 271 dbSNP
rs879231945 271 dbSNP
rs991693916 272 dbSNP
rs755619004 273 dbSNP
rs1461422380 274 dbSNP
rs568472134 275 dbSNP
rs950224387 277 dbSNP
rs1176604671 278 dbSNP
rs1432388405 280 dbSNP
rs1422724806 286 dbSNP
rs1355144038 289 dbSNP
rs1197563174 291 dbSNP
rs1045836019 295 dbSNP
rs763637402 310 dbSNP
rs754362585 311 dbSNP
rs1258283715 316 dbSNP
rs1487628459 316 dbSNP
rs1193433088 321 dbSNP
rs1234524987 329 dbSNP
rs1311990278 335 dbSNP
rs922984137 337 dbSNP
rs966441531 345 dbSNP
rs1054486110 346 dbSNP
rs977866116 350 dbSNP
rs925127312 355 dbSNP
rs146728096 360 dbSNP
rs1303370769 361 dbSNP
rs1055481715 365 dbSNP
rs916579938 367 dbSNP
rs1406011235 379 dbSNP
rs1470552282 382 dbSNP
rs996798780 386 dbSNP
rs949406676 389 dbSNP
rs779425984 390 dbSNP
rs1258284899 393 dbSNP
rs544715085 395 dbSNP
rs560075759 396 dbSNP
rs1483188933 399 dbSNP
rs1261710373 400 dbSNP
rs1046437782 406 dbSNP
rs1008453408 412 dbSNP
rs1015356278 413 dbSNP
rs1216347443 415 dbSNP
rs897211940 421 dbSNP
rs961447662 423 dbSNP
rs1395425027 430 dbSNP
rs995215993 433 dbSNP
rs888639648 434 dbSNP
rs868387148 435 dbSNP
rs368925283 437 dbSNP
rs1460617390 439 dbSNP
rs1370307146 442 dbSNP
rs991703774 443 dbSNP
rs1018980352 445 dbSNP
rs1241826696 454 dbSNP
rs763047978 456 dbSNP
rs141272186 459 dbSNP
rs1180977698 460 dbSNP
rs1458502614 470 dbSNP
rs916127729 478 dbSNP
rs1282332345 480 dbSNP
rs997104134 483 dbSNP
rs867204649 491 dbSNP
rs188976304 493 dbSNP
rs192974954 495 dbSNP
rs528458012 500 dbSNP
rs1380578766 501 dbSNP
rs550262550 510 dbSNP
rs750759442 516 dbSNP
rs1447354252 518 dbSNP
rs373762147 523 dbSNP
rs1330659482 529 dbSNP
rs934770580 532 dbSNP
rs1329000671 538 dbSNP
rs571682858 543 dbSNP
rs539099886 544 dbSNP
rs117718747 549 dbSNP
rs550932266 554 dbSNP
rs566055955 555 dbSNP
rs1160511991 568 dbSNP
rs943955609 571 dbSNP
rs1481061561 574 dbSNP
rs1037295230 579 dbSNP
rs949293207 580 dbSNP
rs1237757881 582 dbSNP
rs1179955763 589 dbSNP
rs185151022 593 dbSNP
rs1267795275 596 dbSNP
rs764290970 596 dbSNP
rs1357173416 600 dbSNP
rs896986314 605 dbSNP
rs982081635 608 dbSNP
rs918613087 609 dbSNP
rs1352371251 612 dbSNP
rs1453141112 617 dbSNP
rs780385523 634 dbSNP
rs1438181555 637 dbSNP
rs1331398523 638 dbSNP
rs1324605646 642 dbSNP
rs1387431279 645 dbSNP
rs1386615429 659 dbSNP
rs536956505 661 dbSNP
rs894832483 664 dbSNP
rs768670008 666 dbSNP
rs942822514 676 dbSNP
rs570892884 678 dbSNP
rs1024631931 686 dbSNP
rs1345891174 687 dbSNP
rs1479126054 695 dbSNP
rs1378483366 696 dbSNP
rs555255209 708 dbSNP
rs981716832 709 dbSNP
rs1304779692 710 dbSNP
rs901404895 720 dbSNP
rs1487640196 721 dbSNP
rs1032289746 722 dbSNP
rs956155855 726 dbSNP
rs1220514325 727 dbSNP
rs1345258743 727 dbSNP
rs1273923583 728 dbSNP
rs1315877320 749 dbSNP
rs1300524899 756 dbSNP
rs1401148084 762 dbSNP
rs990233607 763 dbSNP
rs1316293215 764 dbSNP
rs10150278 765 dbSNP
rs1403139605 765 dbSNP
rs1261905414 766 dbSNP
rs1356868149 772 dbSNP
rs1479303685 772 dbSNP
rs1221210640 777 dbSNP
rs1194208693 782 dbSNP
rs932651719 787 dbSNP
rs1240337769 792 dbSNP
rs1490605738 796 dbSNP
rs1211580631 803 dbSNP
rs1442529076 806 dbSNP
rs1277417945 809 dbSNP
rs1201402495 813 dbSNP
rs539916312 821 dbSNP
rs114835885 822 dbSNP
rs1219693716 823 dbSNP
rs1361839585 831 dbSNP
rs943987768 832 dbSNP
rs1249016441 836 dbSNP
rs553197050 839 dbSNP
rs1341161379 841 dbSNP
rs1336252692 843 dbSNP
rs1468431030 848 dbSNP
rs1159928292 853 dbSNP
rs1402805463 854 dbSNP
rs1171099970 860 dbSNP
rs113529159 862 dbSNP
rs543998887 874 dbSNP
rs1417253001 875 dbSNP
rs1183551379 892 dbSNP
rs1472808164 896 dbSNP
rs1236389343 900 dbSNP
rs896996087 901 dbSNP
rs1163139536 904 dbSNP
rs1199628554 905 dbSNP
rs1307313904 906 dbSNP
rs559094176 914 dbSNP
rs577695446 916 dbSNP
rs749182803 923 dbSNP
rs1357056855 926 dbSNP
rs866354289 927 dbSNP
rs1314454825 936 dbSNP
rs1450608949 937 dbSNP
rs1379361370 938 dbSNP
rs894928988 941 dbSNP
rs1011981460 948 dbSNP
rs1296184902 949 dbSNP
rs1372535733 952 dbSNP
rs796434045 970 dbSNP
rs1161106334 971 dbSNP
rs1441042441 983 dbSNP
rs906189772 984 dbSNP
rs1379908845 994 dbSNP
rs145065708 1002 dbSNP
rs1031886577 1005 dbSNP
rs1480475562 1008 dbSNP
rs1231530111 1011 dbSNP
rs1360688216 1012 dbSNP
rs929998279 1013 dbSNP
rs762410875 1019 dbSNP
rs1243824285 1020 dbSNP
rs867877260 1037 dbSNP
rs1310191381 1038 dbSNP
rs1223433977 1044 dbSNP
rs984140676 1046 dbSNP
rs909922652 1049 dbSNP
rs942811853 1050 dbSNP
rs1364851024 1062 dbSNP
rs1040252059 1070 dbSNP
rs1420930521 1081 dbSNP
rs1483546226 1083 dbSNP
rs79038945 1089 dbSNP
rs1157825585 1090 dbSNP
rs1416931321 1092 dbSNP
rs990289062 1093 dbSNP
rs377482832 1094 dbSNP
rs770841160 1097 dbSNP
rs902185499 1106 dbSNP
rs1268742883 1108 dbSNP
rs999559738 1109 dbSNP
rs1240149350 1124 dbSNP
rs1286820700 1142 dbSNP
rs1442853212 1146 dbSNP
rs954293489 1150 dbSNP
rs1215228377 1169 dbSNP
rs1315327644 1170 dbSNP
rs1183283199 1173 dbSNP
rs187084520 1176 dbSNP
rs535756319 1188 dbSNP
rs80079668 1192 dbSNP
rs1012019038 1199 dbSNP
rs78860903 1201 dbSNP
rs1401768131 1205 dbSNP
rs944014659 1209 dbSNP
rs1023873653 1212 dbSNP
rs1451052752 1214 dbSNP
rs560813214 1222 dbSNP
rs1176365377 1229 dbSNP
rs146775913 1240 dbSNP
rs1353659598 1243 dbSNP
rs918474706 1254 dbSNP
rs1462475144 1257 dbSNP
rs1479082206 1272 dbSNP
rs1025526880 1279 dbSNP
rs1403345148 1280 dbSNP
rs1204600515 1282 dbSNP
rs1451256347 1290 dbSNP
rs1052280615 1294 dbSNP
rs931219420 1307 dbSNP
rs1048241671 1316 dbSNP
rs1211100772 1320 dbSNP
rs1384549903 1321 dbSNP
rs1322481741 1325 dbSNP
rs117068735 1326 dbSNP
rs947832085 1332 dbSNP
rs1046111357 1333 dbSNP
rs1341023056 1337 dbSNP
rs909902570 1340 dbSNP
rs571416813 1341 dbSNP
rs759286107 1346 dbSNP
rs866530627 1351 dbSNP
rs1303000385 1361 dbSNP
rs111848299 1362 dbSNP
rs1053378337 1366 dbSNP
rs1260538002 1370 dbSNP
rs1460330544 1376 dbSNP
rs892081117 1377 dbSNP
rs555608496 1399 dbSNP
rs1011816888 1411 dbSNP
rs1041873395 1412 dbSNP
rs1243784087 1414 dbSNP
rs1426748719 1415 dbSNP
rs547829796 1418 dbSNP
rs148937402 1419 dbSNP
rs183641147 1420 dbSNP
rs1428887354 1430 dbSNP
rs936281773 1443 dbSNP
rs1053842297 1454 dbSNP
rs1339859808 1466 dbSNP
rs1250636878 1467 dbSNP
rs1172512922 1469 dbSNP
rs1225158606 1475 dbSNP
rs1312791213 1479 dbSNP
rs893498991 1479 dbSNP
rs1451343264 1481 dbSNP
rs536621531 1488 dbSNP
rs1403833948 1492 dbSNP
rs1449395610 1499 dbSNP
rs1397672228 1500 dbSNP
rs1012399429 1503 dbSNP
rs1007390568 1508 dbSNP
rs1469167958 1516 dbSNP
rs1336852111 1528 dbSNP
rs143805613 1533 dbSNP
rs1370755798 1534 dbSNP
rs1044874803 1535 dbSNP
rs906283424 1545 dbSNP
rs1241475296 1551 dbSNP
rs1428265690 1566 dbSNP
rs1438123315 1569 dbSNP
rs1019672301 1580 dbSNP
rs148178755 1586 dbSNP
rs1287921074 1587 dbSNP
rs1292462394 1595 dbSNP
rs965772974 1596 dbSNP
rs1356670181 1613 dbSNP
rs758963308 1614 dbSNP
rs1310918672 1616 dbSNP
rs1334869946 1632 dbSNP
rs972739206 1635 dbSNP
rs1390073119 1638 dbSNP
rs574915105 1641 dbSNP
rs1322075292 1650 dbSNP
rs1304306492 1658 dbSNP
rs1424037734 1671 dbSNP
rs558934411 1673 dbSNP
rs1160603845 1692 dbSNP
rs577362331 1701 dbSNP
rs1470627868 1707 dbSNP
rs1263889155 1714 dbSNP
rs1444169093 1719 dbSNP
rs914809395 1719 dbSNP
rs1179358463 1722 dbSNP
rs1213996596 1728 dbSNP
rs1484282172 1728 dbSNP
rs1180143346 1729 dbSNP
rs1193231896 1729 dbSNP
rs1198502539 1729 dbSNP
rs1265305417 1729 dbSNP
rs1300090935 1729 dbSNP
rs1383008216 1729 dbSNP
rs1384478100 1729 dbSNP
rs1401402636 1729 dbSNP
rs1429741156 1729 dbSNP
rs1478853154 1729 dbSNP
rs1479405639 1729 dbSNP
rs1485195111 1729 dbSNP
rs370482381 1729 dbSNP
rs778469604 1729 dbSNP
rs878857916 1729 dbSNP
rs1491326535 1730 dbSNP
rs952671206 1731 dbSNP
rs1486281587 1733 dbSNP
rs544778066 1736 dbSNP
rs1201832065 1737 dbSNP
rs1323904804 1738 dbSNP
rs922650792 1740 dbSNP
rs1480080900 1741 dbSNP
rs916421432 1741 dbSNP
rs73276819 1742 dbSNP
rs1046587665 1744 dbSNP
rs927704562 1747 dbSNP
rs1272464531 1748 dbSNP
rs1431507835 1749 dbSNP
rs543891229 1751 dbSNP
rs1157663061 1753 dbSNP
rs571722956 1757 dbSNP
rs1471075565 1758 dbSNP
rs756488348 1770 dbSNP
rs1407183215 1777 dbSNP
rs936234998 1790 dbSNP
rs139269934 1793 dbSNP
rs1183227248 1808 dbSNP
rs1474758094 1812 dbSNP
rs149642747 1812 dbSNP
rs199743583 1812 dbSNP
rs914885784 1812 dbSNP
rs1300460281 1814 dbSNP
rs1189094306 1821 dbSNP
rs372104958 1822 dbSNP
rs552505573 1822 dbSNP
rs560523771 1822 dbSNP
rs201493365 1823 dbSNP
rs1321884425 1826 dbSNP
rs543691733 1847 dbSNP
rs1215669328 1848 dbSNP
rs1268475405 1849 dbSNP
rs1339385598 1849 dbSNP
rs116144040 1851 dbSNP
rs1284476123 1855 dbSNP
rs1347284456 1865 dbSNP
rs1222151541 1866 dbSNP
rs760361834 1869 dbSNP
rs1329376072 1870 dbSNP
rs1409291978 1874 dbSNP
rs1283567369 1875 dbSNP
rs1417356674 1875 dbSNP
rs1003311178 1880 dbSNP
rs1317777368 1884 dbSNP
rs1181382422 1886 dbSNP
rs1460206083 1887 dbSNP
rs1046912072 1893 dbSNP
rs1205734209 1895 dbSNP
rs886974808 1905 dbSNP
rs1271548183 1909 dbSNP
rs1248209862 1916 dbSNP
rs1360282230 1918 dbSNP
rs1011869124 1924 dbSNP
rs763579537 1927 dbSNP
rs889970339 1928 dbSNP
rs3813402 1929 dbSNP
rs1298517483 1934 dbSNP
rs1020188737 1939 dbSNP
rs188302615 1947 dbSNP
rs1352653094 1973 dbSNP
rs994211348 1976 dbSNP
rs1025636108 1981 dbSNP
rs1248396443 1983 dbSNP
rs180882772 1995 dbSNP
rs984003788 1996 dbSNP
rs765792993 1997 dbSNP
rs955436013 2002 dbSNP
rs540317837 2004 dbSNP
rs1469972583 2008 dbSNP
rs1408018222 2012 dbSNP
rs1231619568 2018 dbSNP
rs530203754 2028 dbSNP
rs1490676615 2031 dbSNP
rs142734221 2032 dbSNP
rs957598192 2039 dbSNP
rs990724753 2040 dbSNP
rs916130439 2049 dbSNP
rs1222946966 2050 dbSNP
rs1171291983 2065 dbSNP
rs1375239747 2067 dbSNP
rs1424406829 2073 dbSNP
rs981995337 2075 dbSNP
rs570064017 2081 dbSNP
rs1333333041 2082 dbSNP
rs1300720865 2087 dbSNP
rs980409690 2098 dbSNP
rs1279057518 2102 dbSNP
rs1345372202 2106 dbSNP
rs927769119 2115 dbSNP
rs1400430451 2117 dbSNP
rs935106596 2121 dbSNP
rs1289848371 2124 dbSNP
rs758878072 2128 dbSNP
rs147388096 2159 dbSNP
rs1046880665 2161 dbSNP
rs1486903510 2169 dbSNP
rs1261474558 2170 dbSNP
rs914914304 2175 dbSNP
rs1222959856 2190 dbSNP
rs1315421188 2192 dbSNP
rs185663679 2194 dbSNP
rs946343295 2195 dbSNP
rs1043342223 2203 dbSNP
rs941165020 2204 dbSNP
rs7143282 2217 dbSNP
rs1383362110 2218 dbSNP
rs1362055046 2241 dbSNP
rs748196743 2251 dbSNP
rs137885597 2263 dbSNP
rs1428204975 2270 dbSNP
rs1041257596 2278 dbSNP
rs780547094 2284 dbSNP
rs1232997281 2308 dbSNP
rs891157495 2326 dbSNP
rs998890987 2326 dbSNP
rs1440991270 2329 dbSNP
rs994222428 2331 dbSNP
rs560390524 2333 dbSNP
rs118188546 2340 dbSNP
rs1463694859 2350 dbSNP
rs1245243465 2357 dbSNP
rs1204013027 2360 dbSNP
rs990303700 2367 dbSNP
rs535938777 2371 dbSNP
rs1308067975 2372 dbSNP
rs1023572387 2377 dbSNP
rs970279545 2380 dbSNP
rs1384497594 2386 dbSNP
rs1005477821 2388 dbSNP
rs981718412 2391 dbSNP
rs939038705 2392 dbSNP
rs1024041555 2393 dbSNP
rs969356058 2394 dbSNP
rs1301527554 2396 dbSNP
rs1393264872 2406 dbSNP
rs1463965336 2407 dbSNP
rs1374195909 2408 dbSNP
rs781142319 2410 dbSNP
rs1408763841 2414 dbSNP
rs190569524 2423 dbSNP
rs941122108 2435 dbSNP
rs117174233 2447 dbSNP
rs987908110 2448 dbSNP
rs543355867 2450 dbSNP
rs1382350282 2452 dbSNP
rs748206711 2456 dbSNP
rs1360992513 2459 dbSNP
rs1315232701 2464 dbSNP
rs1285788889 2465 dbSNP
rs914966206 2478 dbSNP
rs1380194162 2483 dbSNP
rs565160157 2490 dbSNP
rs1195231216 2492 dbSNP
rs1298122628 2501 dbSNP
rs985838761 2501 dbSNP
rs1458989840 2503 dbSNP
rs1367532946 2510 dbSNP
rs1164367285 2526 dbSNP
rs1444214845 2531 dbSNP
rs868589314 2532 dbSNP
rs1201231559 2548 dbSNP
rs576981623 2555 dbSNP
rs571913541 2562 dbSNP
rs1249662544 2564 dbSNP
rs559567137 2568 dbSNP
rs1490839706 2573 dbSNP
rs1189164641 2580 dbSNP
rs1041660531 2588 dbSNP
rs530266364 2596 dbSNP
rs548695301 2602 dbSNP
rs1262156119 2603 dbSNP
rs1241561394 2604 dbSNP
rs1336735431 2607 dbSNP
rs1288199031 2611 dbSNP
rs1474627927 2611 dbSNP
rs1347990309 2614 dbSNP
rs1167645622 2615 dbSNP
rs1424978341 2616 dbSNP
rs1303806609 2618 dbSNP
rs1467608503 2619 dbSNP
rs1334818962 2625 dbSNP
rs1012098231 2629 dbSNP
rs370528844 2629 dbSNP
rs1023119756 2632 dbSNP
rs140209396 2640 dbSNP
rs72713439 2643 dbSNP
rs759529958 2643 dbSNP
rs1336399905 2652 dbSNP
rs1198013020 2654 dbSNP
rs888557411 2665 dbSNP
rs1285845551 2667 dbSNP
rs1324523896 2667 dbSNP
rs1205359181 2669 dbSNP
rs775387422 2670 dbSNP
rs1267876126 2679 dbSNP
rs1226989219 2685 dbSNP
rs1312222221 2689 dbSNP
rs114105039 2693 dbSNP
rs1319949702 2702 dbSNP
rs1284510499 2703 dbSNP
rs1221557840 2707 dbSNP
rs1320451474 2710 dbSNP
rs1329427697 2710 dbSNP
rs1382979889 2714 dbSNP
rs757880126 2715 dbSNP
rs950952970 2715 dbSNP
rs982441331 2715 dbSNP
rs962508340 2723 dbSNP
rs1175629076 2726 dbSNP
rs778859289 2728 dbSNP
rs1476716872 2733 dbSNP
rs1262018529 2735 dbSNP
rs1243341276 2739 dbSNP
rs1193349491 2752 dbSNP
rs1446041121 2754 dbSNP
rs1245850754 2759 dbSNP
rs760573089 2765 dbSNP
rs1201888112 2783 dbSNP
rs921101720 2784 dbSNP
rs1219157466 2787 dbSNP
rs1343567333 2793 dbSNP
rs1271982280 2797 dbSNP
rs745783344 2798 dbSNP
rs1050879337 2801 dbSNP
rs1278075029 2803 dbSNP
rs1003469273 2804 dbSNP
rs1318807564 2810 dbSNP
rs149470426 2818 dbSNP
rs1406548752 2824 dbSNP
rs956539513 2830 dbSNP
rs1412672615 2847 dbSNP
rs1421625392 2857 dbSNP
rs1445996231 2858 dbSNP
rs1474808826 2863 dbSNP
rs1192958804 2866 dbSNP
rs1264288345 2896 dbSNP
rs988001382 2901 dbSNP
rs1185055311 2907 dbSNP
rs1461547881 2921 dbSNP
rs546208641 2929 dbSNP
rs185915258 2932 dbSNP
rs546835415 2933 dbSNP
rs144134203 2935 dbSNP
rs1428768429 2938 dbSNP
rs1209921271 2940 dbSNP
rs1466608568 2971 dbSNP
rs967831694 2989 dbSNP
rs986278551 2992 dbSNP
rs1295588219 2998 dbSNP
rs1383074984 3005 dbSNP
rs1248439777 3006 dbSNP
rs910227997 3007 dbSNP
rs1381821013 3008 dbSNP
rs1445591035 3012 dbSNP
rs1298603155 3016 dbSNP
rs1329471658 3017 dbSNP
rs114833731 3039 dbSNP
rs1368163661 3040 dbSNP
rs1164999314 3058 dbSNP
rs1444845849 3061 dbSNP
rs373409358 3076 dbSNP
rs575970540 3078 dbSNP
rs905943426 3080 dbSNP
rs1472025504 3083 dbSNP
rs930212946 3088 dbSNP
rs1003075580 3094 dbSNP
rs1483053750 3099 dbSNP
rs142221717 3111 dbSNP
rs771911180 3113 dbSNP
rs1360398448 3117 dbSNP
rs1289461104 3127 dbSNP
rs950967437 3142 dbSNP
rs1005520124 3145 dbSNP
rs1015271267 3154 dbSNP
rs962655920 3156 dbSNP
rs188717260 3164 dbSNP
rs1304401745 3166 dbSNP
rs1424783859 3175 dbSNP
rs910050442 3182 dbSNP
rs1348887065 3183 dbSNP
rs1162270226 3188 dbSNP
rs577097460 3193 dbSNP
rs1205332029 3196 dbSNP
rs1410610927 3198 dbSNP
rs1160445039 3200 dbSNP
rs181410430 3204 dbSNP
rs185691510 3207 dbSNP
rs1201634003 3216 dbSNP
rs1490538484 3217 dbSNP
rs189972469 3230 dbSNP
rs1219641575 3231 dbSNP
rs953784970 3233 dbSNP
rs1284672280 3237 dbSNP
rs986621423 3238 dbSNP
rs1434189421 3242 dbSNP
rs375754050 3243 dbSNP
rs796272238 3244 dbSNP
rs912372817 3248 dbSNP
rs1345469259 3250 dbSNP
rs1160320784 3265 dbSNP
rs182781252 3266 dbSNP
rs1410325655 3272 dbSNP
rs146234955 3282 dbSNP
rs1056457504 3284 dbSNP
rs187276369 3285 dbSNP
rs530890863 3286 dbSNP
rs768299317 3289 dbSNP
rs1022173275 3290 dbSNP
rs967840258 3292 dbSNP
rs776028701 3293 dbSNP
rs1058811 3294 dbSNP
rs1207828160 3300 dbSNP
rs1422499763 3301 dbSNP
rs1302232617 3302 dbSNP
rs1007315015 3303 dbSNP
rs761349259 3305 dbSNP
rs1304297512 3308 dbSNP
rs905975744 3313 dbSNP
rs1215856422 3323 dbSNP
rs1362170429 3324 dbSNP
rs965751321 3327 dbSNP
rs542957784 3332 dbSNP
rs1319496900 3336 dbSNP
rs976180198 3341 dbSNP
rs918903624 3347 dbSNP
rs1339172656 3348 dbSNP
rs951669679 3363 dbSNP
rs1359140460 3366 dbSNP
rs886576930 3367 dbSNP
rs1240512009 3368 dbSNP
rs982987598 3369 dbSNP
rs910061742 3370 dbSNP
rs1188169308 3371 dbSNP
rs192181085 3378 dbSNP
rs1356756137 3385 dbSNP
rs1200872985 3388 dbSNP
rs1482868391 3389 dbSNP
rs564318723 3394 dbSNP
rs1205947285 3399 dbSNP
rs528820238 3402 dbSNP
rs1307574422 3408 dbSNP
rs546849456 3412 dbSNP
rs926728809 3420 dbSNP
rs939434243 3427 dbSNP
rs1056519061 3428 dbSNP
rs534597857 3429 dbSNP
rs568318440 3433 dbSNP
rs892466480 3445 dbSNP
rs1402064400 3453 dbSNP
rs1301623640 3454 dbSNP
rs1009496407 3456 dbSNP
rs1463527862 3457 dbSNP
rs1027929068 3458 dbSNP
rs1248559005 3463 dbSNP
rs1043627598 3464 dbSNP
rs1428037582 3465 dbSNP
rs1387359643 3472 dbSNP
rs1187951715 3481 dbSNP
rs6572974 3490 dbSNP
rs1253920967 3497 dbSNP
rs986485583 3501 dbSNP
rs1007774768 3502 dbSNP
rs1202461503 3505 dbSNP
rs1017421627 3509 dbSNP
rs1361107076 3510 dbSNP
rs1265689536 3518 dbSNP
rs1245916625 3519 dbSNP
rs11421330 3520 dbSNP
rs966210172 3520 dbSNP
rs911615 3542 dbSNP
rs1307464288 3546 dbSNP
rs1408113118 3547 dbSNP
rs914508407 3549 dbSNP
rs1459417439 3553 dbSNP
rs753438011 3556 dbSNP
rs1025969895 3557 dbSNP
rs569767513 3570 dbSNP
rs982997699 3572 dbSNP
rs938760845 3573 dbSNP
rs1251035231 3575 dbSNP
rs1057201849 3583 dbSNP
rs536726498 3586 dbSNP
rs940891873 3587 dbSNP
rs1208862926 3589 dbSNP
rs1446907491 3592 dbSNP
rs1017116860 3593 dbSNP
rs1482203977 3598 dbSNP
rs558571565 3600 dbSNP
rs1380159254 3604 dbSNP
rs1230664380 3608 dbSNP
rs8016429 3610 dbSNP
rs981371750 3619 dbSNP
rs996421221 3628 dbSNP
rs79147367 3643 dbSNP
rs1386403907 3650 dbSNP
rs939466541 3657 dbSNP
rs1388896990 3661 dbSNP
rs992211320 3665 dbSNP
rs1007934848 3666 dbSNP
rs751020049 3681 dbSNP
rs1019361897 3686 dbSNP
rs955807755 3687 dbSNP
rs945338110 3692 dbSNP
rs1481413773 3697 dbSNP
rs989079350 3701 dbSNP
rs1181467124 3702 dbSNP
rs1021439462 3703 dbSNP
rs1449481648 3704 dbSNP
rs1263445591 3705 dbSNP
rs1043678648 3708 dbSNP
rs1210917916 3724 dbSNP
rs903795592 3736 dbSNP
rs34054330 3737 dbSNP
rs943279640 3753 dbSNP
rs1227080454 3761 dbSNP
rs1329516001 3762 dbSNP
rs1347809522 3762 dbSNP
rs5808799 3762 dbSNP
rs1414348286 3776 dbSNP
rs763544839 3778 dbSNP
rs927284572 3788 dbSNP
rs1167990790 3790 dbSNP
rs1387635534 3791 dbSNP
rs1372438615 3792 dbSNP
rs1470900419 3815 dbSNP
rs938622741 3824 dbSNP
rs992822762 3833 dbSNP
rs1476767504 3837 dbSNP
rs1332814273 3848 dbSNP
rs1374377514 3851 dbSNP
rs1403235084 3852 dbSNP
rs907983677 3860 dbSNP
rs1448568062 3881 dbSNP
rs1207271572 3896 dbSNP
rs1247773405 3896 dbSNP
rs1039316891 3900 dbSNP
rs766851150 3911 dbSNP
rs1038296335 3914 dbSNP
rs997227673 3915 dbSNP
rs1380420217 3927 dbSNP
rs1229389864 3929 dbSNP
rs1364790347 3934 dbSNP
rs1025979731 3937 dbSNP
rs1230401501 3949 dbSNP
rs1340937662 3952 dbSNP
rs1412202849 3954 dbSNP
rs1371864393 3963 dbSNP
rs1434927736 3984 dbSNP
rs1168733137 3995 dbSNP
rs1293796384 4002 dbSNP
rs1428672309 4004 dbSNP
rs553259343 4009 dbSNP
rs886124587 4024 dbSNP
rs1219760054 4029 dbSNP
rs1005872458 4030 dbSNP
rs1473988063 4039 dbSNP
rs1238492986 4043 dbSNP
rs1187460667 4057 dbSNP
rs1015864825 4063 dbSNP
rs1276832183 4092 dbSNP
rs1050598833 4093 dbSNP
rs890705541 4097 dbSNP
rs1209755689 4099 dbSNP
rs963330109 4100 dbSNP
rs751889557 4101 dbSNP
rs1356790827 4102 dbSNP
rs1283450054 4108 dbSNP
rs1445712823 4110 dbSNP
rs1184597985 4117 dbSNP
rs1352302837 4118 dbSNP
rs981038999 4120 dbSNP
rs1034273082 4121 dbSNP
rs764641649 4129 dbSNP
rs1478133788 4132 dbSNP
rs1040702834 4134 dbSNP
rs1166482786 4139 dbSNP
rs891562468 4145 dbSNP
rs1009964181 4146 dbSNP
rs992265062 4164 dbSNP
rs1472075541 4168 dbSNP
rs1176083174 4169 dbSNP
rs913961259 4172 dbSNP
rs1360541792 4174 dbSNP
rs183435716 4178 dbSNP
rs1001454069 4192 dbSNP
rs979449058 4199 dbSNP
rs1340264073 4206 dbSNP
rs749999533 4208 dbSNP
rs925303398 4209 dbSNP
rs1331073595 4217 dbSNP
rs1288926118 4220 dbSNP
rs187226136 4225 dbSNP
rs907848587 4229 dbSNP
rs962453405 4230 dbSNP
rs1344114608 4234 dbSNP
rs1436727597 4239 dbSNP
rs973479301 4241 dbSNP
rs1460222866 4246 dbSNP
rs1414756239 4257 dbSNP
rs1160556958 4260 dbSNP
rs1218728721 4260 dbSNP
rs943312883 4262 dbSNP
rs1405867797 4264 dbSNP
rs1193039084 4275 dbSNP
rs920764183 4287 dbSNP
rs533269926 4288 dbSNP
rs901674544 4295 dbSNP
rs933131173 4300 dbSNP
rs1219039926 4304 dbSNP
rs546649807 4307 dbSNP
rs35057354 4310 dbSNP
rs1268604830 4315 dbSNP
rs912174711 4322 dbSNP
rs556853737 4323 dbSNP
rs1219334637 4327 dbSNP
rs1041126298 4328 dbSNP
rs1195830261 4329 dbSNP
rs1266697804 4331 dbSNP
rs1395009124 4332 dbSNP
rs891431122 4334 dbSNP
rs1477618104 4340 dbSNP
rs1010407913 4356 dbSNP
rs1191299373 4359 dbSNP
rs575738143 4362 dbSNP
rs1005924740 4371 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gggUGGUCGACGAGGGACCGggu 5'
             | |||  |  |||||||   
Target 5' ---AGCAGAAG--CCCUGGC--- 3'
1 - 15
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_015589 | 3UTR | GUUUGGCCCACACCGCACAGCCCCGCCAUCUCCAGUGGGCGAUGAAAGAUGUAGGAAAGGUUGAUUUCAAGAUGGAAAUGACAGCGCUAUCCGCACAGUAUGAAUUAGGGAUUUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000392067.3 | 3UTR | AGCAGAAGCCCUGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
87 hsa-miR-4640-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT100106 ABT1 activator of basal transcription 1 2 8
MIRT248144 LMBR1L limb development membrane protein 1 like 2 2
MIRT327062 KLHL15 kelch like family member 15 2 2
MIRT347231 GATAD2A GATA zinc finger domain containing 2A 2 2
MIRT450221 CENPN centromere protein N 2 2
MIRT451264 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT452701 C1orf226 chromosome 1 open reading frame 226 2 2
MIRT453212 CERS1 ceramide synthase 1 2 2
MIRT454822 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT454883 RAD50 RAD50 double strand break repair protein 2 2
MIRT455783 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT455858 TMEM254 transmembrane protein 254 2 2
MIRT457615 UPK3BL uroplakin 3B like 1 2 2
MIRT457822 ITPRIP inositol 1,4,5-trisphosphate receptor interacting protein 2 4
MIRT458344 NOC2L NOC2 like nucleolar associated transcriptional repressor 2 2
MIRT458376 ITM2C integral membrane protein 2C 2 2
MIRT458928 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459066 WFIKKN2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 2 2
MIRT460138 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460818 FSTL4 follistatin like 4 2 2
MIRT461285 COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor 2 2
MIRT462738 EFNB1 ephrin B1 2 2
MIRT464556 UBTF upstream binding transcription factor, RNA polymerase I 2 2
MIRT477910 DUSP2 dual specificity phosphatase 2 2 2
MIRT479073 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 4
MIRT479534 CDC5L cell division cycle 5 like 2 4
MIRT485628 EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 2 2
MIRT489896 PPIC peptidylprolyl isomerase C 2 4
MIRT490737 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT491201 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT492681 PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein 2 2
MIRT494593 ATG7 autophagy related 7 2 2
MIRT495061 PADI3 peptidyl arginine deiminase 3 2 4
MIRT496623 TMEM67 transmembrane protein 67 2 2
MIRT497177 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT498217 TLN2 talin 2 2 2
MIRT498306 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT499668 NPHP3 nephrocystin 3 2 2
MIRT508080 ANKRD52 ankyrin repeat domain 52 2 2
MIRT509707 ANKRD23 ankyrin repeat domain 23 2 2
MIRT509841 FOS Fos proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT512814 ARRDC2 arrestin domain containing 2 2 2
MIRT513353 SLIT1 slit guidance ligand 1 2 2
MIRT514293 FXYD5 FXYD domain containing ion transport regulator 5 2 2
MIRT516598 FAM89A family with sequence similarity 89 member A 2 4
MIRT516616 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT518348 CCL5 C-C motif chemokine ligand 5 2 2
MIRT520130 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT522072 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT526461 OSBPL5 oxysterol binding protein like 5 2 2
MIRT528278 MBL2 mannose binding lectin 2 2 2
MIRT534844 RAB15 RAB15, member RAS oncogene family 2 4
MIRT542245 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT543299 ZNF585B zinc finger protein 585B 2 2
MIRT552456 ZNF410 zinc finger protein 410 2 2
MIRT553641 TJAP1 tight junction associated protein 1 2 2
MIRT557103 HOXA3 homeobox A3 2 2
MIRT570782 FANCA Fanconi anemia complementation group A 2 2
MIRT630912 ZMAT2 zinc finger matrin-type 2 2 2
MIRT631034 ZNF878 zinc finger protein 878 2 2
MIRT639017 AAK1 AP2 associated kinase 1 2 2
MIRT648596 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT648939 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 2 2
MIRT652834 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT659347 CSRP1 cysteine and glycine rich protein 1 2 2
MIRT664163 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT670511 ZSCAN22 zinc finger and SCAN domain containing 22 2 2
MIRT671246 TMEM41B transmembrane protein 41B 2 2
MIRT672120 ATP6V0A2 ATPase H+ transporting V0 subunit a2 2 2
MIRT672313 CD3D CD3d molecule 2 2
MIRT672543 BRMS1L breast cancer metastasis-suppressor 1 like 2 2
MIRT673036 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT673814 DARS aspartyl-tRNA synthetase 2 2
MIRT674858 GINM1 glycoprotein integral membrane 1 2 2
MIRT674970 SH3BP2 SH3 domain binding protein 2 2 2
MIRT675185 KIF1C kinesin family member 1C 2 2
MIRT675219 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT675558 MED16 mediator complex subunit 16 2 2
MIRT682566 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2 2
MIRT684640 PDE4C phosphodiesterase 4C 2 2
MIRT689722 ATXN2 ataxin 2 2 2
MIRT693594 SLC39A1 solute carrier family 39 member 1 2 2
MIRT704745 CDKN2B cyclin dependent kinase inhibitor 2B 2 2
MIRT712779 ZNF154 zinc finger protein 154 2 2
MIRT718118 OTOF otoferlin 2 2
MIRT720115 SAMD4A sterile alpha motif domain containing 4A 2 2
MIRT720275 EIF1AD eukaryotic translation initiation factor 1A domain containing 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4640 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4640 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4640-5p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4640-5p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4640-5p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-4640-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4640-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4640-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4640-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4640-5p Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)

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