pre-miRNA Information
pre-miRNA hsa-mir-2115   
Genomic Coordinates chr3: 48316360 - 48316459
Description Homo sapiens miR-2115 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-2115-5p
Sequence 21| AGCUUCCAUGACUCCUGAUGGA |42
Evidence Experimental
Experiments 454
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs372327506 9 dbSNP
rs1259362191 10 dbSNP
rs1215292065 12 dbSNP
rs1197671843 16 dbSNP
rs1468768022 20 dbSNP
rs1273755407 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PNPO   
Synonyms HEL-S-302, PDXPO
Description pyridoxamine 5'-phosphate oxidase
Transcript NM_018129   
Expression
Putative miRNA Targets on PNPO
3'UTR of PNPO
(miRNA target sites are highlighted)
>PNPO|NM_018129|3'UTR
   1 CTCTGGGACCTGCTGGCCCAGAGTGGAGCTAGGGCTAGGTGTCAAGAGAGGGTGTGGGATTGGGACCCAGGCCCTTCTTT
  81 CTAAACTCAACCCATTTCCCTCCCTACCCCTTATCTTCAGGACTCTTCAGAGCTAATCCTCTAAGTTCTCTGTACTCAGT
 161 TGGTTCTCAGTTAGCTGGTCAAGTGGAGTGTAATGGTGGCGTAGAGAATCACAAATGGAAAATAATTCCATAATTATTTT
 241 TTTGACCTTGCCTATGATTGATTAGGATAGCTCCCTCTAGGGGTAGCAGCCGGTGTGACTCCCTTTCTGGTGACAGACAG
 321 GGCCCCAGCAGCCCTGTCTGTTACCATGTGAGTCATACTGGCCAAAGCTTAGTCCTAGCATATGCACCTGAGCCAACCTG
 401 GCCAATCAGATTGTTTTGTCAATAATTTGAAATTTGAACTGGAGAGATCCAGAACCTTGGGAGTCATTAAAGCCAAGTCA
 481 TTCATAGCAGCCAGGAAACAATAGGAACCAAAAGCCTCTGCCTGCTGCTATTGCAATTCCCAGGATCTCTCCTTCCCTGG
 561 ATCCCTCCCTCCCAGGTCTGGGCTGTGCAGTTCCTCCCCCTGCCTTAAAACACCCCACTATCTCTGTAAAGTCTCTCTCT
 641 CTCTTTTTTTTTTTTTTACTTAATCTAGCTAGAATCTATTTCTGTTGATTACAACTTAACTAACTCATTTACGGATAGGA
 721 CTTTTTTTTTTCTTTTTTTCTTTTTTCTTTTCTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCACCCAGGCTGGAGTG
 801 CAGTGGTGTGATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTG
 881 GGACTACAGGCACACGCCACCACACCCAACTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGAT
 961 TGTCTCCATCTCTTGACCTTGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACACCC
1041 AGCGAGACGGGGTTTCATTATGTTGGCCAGGCTGGTCTCCAACTCCTGACCTAAAGTGATCTGCCCGCCTTGGCCTCCCA
1121 AAGTGCTGGGATTACAGACATGAGCCACCACGCTTGGCCGGGATAGTATATTTTTATAGCACTTCCCCTACTGATTGCTG
1201 CCTTCTCTGTGGCTACAAGGGACCCACAGAATTACAGGGAAGTTACAGGGAAGCAGGTTTCATCTCAATATTGGGAGAGA
1281 TTTCAAACAATCACACCTGCCTGAGAAGGAGTGGGCTGTCACTAGGAATTTTTATTCCCAGTCCGTCAGGAATTTTGTAG
1361 AAGGGCTTCATGTGCTGGTACCAATAGGACAGGAAGATTTTAATCAGCTTTACTATCTATGTTTTTTTATGGAAACTGTG
1441 TGTATGTATACATACATTTTCCAAAAAGAAAAATTAAATGATTATAGAGATTATGTTTTTCAGACTACTCACGTATCTGC
1521 TTTTCTTACTCCCCACCTCTGCTGATAATTCCTAGTTCATTGGTTTTTCCCCCACACTGGAATTACCTGGGGAGCTTAAA
1601 AAACCCTGATGCCTGGGTCCCACCCTCAGAGATGATTGAACCAGCCTGGCCAGCATGGCAAAACCCTGTCTCTACTATGA
1681 TATGAATGCAGCCTGGGCACTGGGAAATTTAAAAACTCCCCAGATAATTCTGTGCAGCCAAGGTTGAGACCTCCTAGTCT
1761 AGAGCTTTGCTATACACAGGGTGGTCCACAAGCCAGGAGCATCAGCATCACTTGGCAGCGCCTTAGAGATTCAGACCCCA
1841 GACCCACTGAATCTGACCCTGCATTTTCACTAGACCCCAGGTGATCAGCTGCACTAGACTCAACCTCTAAACCAAGACCT
1921 CCCACCCTCACAGTCTATGATCCTTTAGTGACCCTCAGCTGAGTCCTGTGCTGAACTGTGTTTGTTCTCCTTGAGCACAT
2001 GCCCGCTAACCAGGGACAGACTGGATGAGCAAGCAACCTGCTGGCTATGGAGAAGAGCCAGGCTGGGTAAATGTTTGCTG
2081 TGACTAAGCCAGGATCAAAGAACTGCCTGTTGCTTGCACTGGCTGGCACTGAGCTTGCCACTCTGTGAACTGTGCTTCCT
2161 TCCCCTGCATGGACCTGTGCCTCAGTCACTATTATCCGCAGGCCTTCTCCAAGGGCAGCCCTCTCCTTGTTTATCCCTCT
2241 TAAGCCTGCGTGCAGGAAGGCACATTAACCCTGTGGCCCCCTGCAGGCAGGAGGGTGTTGGGTGCCCTTACCTACCTTGC
2321 CCTTTTTCTTGTACCGTAGGCTGTGCCGTTTATGAGTAAGTGATGTGTGTCTGTGTGTGTGTCTAGAAGTGCTGCACTCA
2401 CCTTGTGTTATTGGAGGTTGTGTAACCCCCTAGCTTTGAGCCTGGTCTCAGATGTTCCTTTTCCGTTCTCTGTCCAGCCG
2481 TTACCGCCCCCAGTCTGTAATAAAAGCCTATCAGCCGTGCACTTTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGUAGUCCUCAGU--ACCUUCGa 5'
            |||||| | |||  ||| ||| 
Target 5' agCATCAGCA-TCACTTGGCAGCg 3'
1798 - 1820 137.00 -13.50
2
miRNA  3' agguaGUCC--UCA--GUACCUUCGa 5'
               ||||  |||  || |||||| 
Target 5' aattaCAGGGAAGTTACAGGGAAGCa 3'
1230 - 1255 133.00 -16.50
3
miRNA  3' agGUAGUCCUCAGU-ACCUUCGa 5'
            || |  | ||:| ||||:|: 
Target 5' ctCACCTTGTGTTATTGGAGGTt 3'
2397 - 2419 124.00 -13.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
323911 73 ClinVar
888577 85 ClinVar
323912 107 ClinVar
888578 142 ClinVar
323913 201 ClinVar
323914 273 ClinVar
323915 282 ClinVar
1195479 294 ClinVar
323916 302 ClinVar
890277 342 ClinVar
323917 353 ClinVar
323918 513 ClinVar
323919 612 ClinVar
323920 644 ClinVar
890278 644 ClinVar
323921 722 ClinVar
890279 730 ClinVar
323922 734 ClinVar
323923 753 ClinVar
890841 757 ClinVar
323924 792 ClinVar
890842 819 ClinVar
323925 826 ClinVar
890843 878 ClinVar
323926 896 ClinVar
323927 905 ClinVar
323928 946 ClinVar
323929 959 ClinVar
323930 1049 ClinVar
323931 1124 ClinVar
323932 1152 ClinVar
892085 1191 ClinVar
323933 1394 ClinVar
892086 1514 ClinVar
323934 1581 ClinVar
323935 1669 ClinVar
323936 1758 ClinVar
323937 1778 ClinVar
888624 1804 ClinVar
323938 1843 ClinVar
323939 1884 ClinVar
888625 1966 ClinVar
323940 2009 ClinVar
890329 2192 ClinVar
890330 2292 ClinVar
323941 2491 ClinVar
COSN30474447 22 COSMIC
COSN30459246 71 COSMIC
COSN21137953 72 COSMIC
COSN30151121 78 COSMIC
COSN30533668 103 COSMIC
COSN30105494 199 COSMIC
COSN18915912 275 COSMIC
COSN20114072 658 COSMIC
COSN27219760 658 COSMIC
COSN28974958 658 COSMIC
COSN20114074 765 COSMIC
COSN18861192 766 COSMIC
COSN8837708 831 COSMIC
COSN5179275 833 COSMIC
COSN24608318 1292 COSMIC
COSN8837709 1340 COSMIC
COSN21961528 1621 COSMIC
COSN8243071 1937 COSMIC
COSN6105072 1993 COSMIC
COSN32058054 2009 COSMIC
COSN25787514 2025 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1172298849 13 dbSNP
rs1404112256 18 dbSNP
rs1371210143 19 dbSNP
rs1338789994 31 dbSNP
rs1461423845 34 dbSNP
rs902078664 35 dbSNP
rs933512450 40 dbSNP
rs779493771 41 dbSNP
rs1450692099 45 dbSNP
rs748610077 53 dbSNP
rs1047900767 54 dbSNP
rs886578063 58 dbSNP
rs1409256328 64 dbSNP
rs958802276 65 dbSNP
rs1181621122 67 dbSNP
rs762247051 71 dbSNP
rs535512907 73 dbSNP
rs1205048579 85 dbSNP
rs1014335830 95 dbSNP
rs1006267889 99 dbSNP
rs1406277505 102 dbSNP
rs1167375782 104 dbSNP
rs772682275 105 dbSNP
rs117508783 107 dbSNP
rs1318643237 116 dbSNP
rs1307458334 119 dbSNP
rs575866429 126 dbSNP
rs967569458 142 dbSNP
rs1380900277 144 dbSNP
rs370246326 154 dbSNP
rs978080803 161 dbSNP
rs1297102045 170 dbSNP
rs1377070776 171 dbSNP
rs905900161 178 dbSNP
rs1164524277 179 dbSNP
rs926193300 186 dbSNP
rs1383025990 191 dbSNP
rs761169544 201 dbSNP
rs1035636905 202 dbSNP
rs1312411656 203 dbSNP
rs1184199953 215 dbSNP
rs959965529 224 dbSNP
rs766717524 229 dbSNP
rs1220587378 237 dbSNP
rs975027145 257 dbSNP
rs1357076165 267 dbSNP
rs920913638 268 dbSNP
rs933774716 272 dbSNP
rs189065288 273 dbSNP
rs369895318 276 dbSNP
rs1203808748 278 dbSNP
rs968500926 279 dbSNP
rs1363307393 282 dbSNP
rs886053102 283 dbSNP
rs1201883011 284 dbSNP
rs978574512 284 dbSNP
rs576462449 285 dbSNP
rs910954567 287 dbSNP
rs1473254934 292 dbSNP
rs939834693 293 dbSNP
rs111534752 294 dbSNP
rs1417895635 295 dbSNP
rs578179754 300 dbSNP
rs540606185 302 dbSNP
rs1261793749 304 dbSNP
rs1198648980 310 dbSNP
rs933585164 312 dbSNP
rs868226488 324 dbSNP
rs1222873755 329 dbSNP
rs1341728775 333 dbSNP
rs1047930475 334 dbSNP
rs1249796932 334 dbSNP
rs1308203735 335 dbSNP
rs1002103272 336 dbSNP
rs78358763 342 dbSNP
rs529271805 348 dbSNP
rs16949676 353 dbSNP
rs1358149433 355 dbSNP
rs1395358735 359 dbSNP
rs754278955 359 dbSNP
rs1037820283 376 dbSNP
rs1014388301 378 dbSNP
rs1373211226 417 dbSNP
rs1175068988 446 dbSNP
rs905926135 453 dbSNP
rs1024355455 471 dbSNP
rs1285720695 473 dbSNP
rs967960175 478 dbSNP
rs999007338 479 dbSNP
rs867697340 484 dbSNP
rs1057445137 485 dbSNP
rs1359671145 488 dbSNP
rs1213885554 503 dbSNP
rs562654007 505 dbSNP
rs375738552 513 dbSNP
rs7220104 513 dbSNP
rs1010159795 515 dbSNP
rs1262608090 515 dbSNP
rs528733484 521 dbSNP
rs1284437606 523 dbSNP
rs550360186 527 dbSNP
rs752776194 528 dbSNP
rs920967474 531 dbSNP
rs1392829349 533 dbSNP
rs1396692073 548 dbSNP
rs1221698578 549 dbSNP
rs986498791 556 dbSNP
rs1335496578 570 dbSNP
rs1467737440 574 dbSNP
rs1408239109 580 dbSNP
rs1177124462 581 dbSNP
rs1469535773 582 dbSNP
rs1361908571 583 dbSNP
rs566516382 583 dbSNP
rs1000423388 584 dbSNP
rs570588023 585 dbSNP
rs1419901732 586 dbSNP
rs527507323 586 dbSNP
rs1242717875 587 dbSNP
rs955000810 590 dbSNP
rs1018045685 591 dbSNP
rs1462753589 599 dbSNP
rs533218088 608 dbSNP
rs7219707 612 dbSNP
rs1205130292 615 dbSNP
rs1349141871 617 dbSNP
rs1281650515 621 dbSNP
rs1313857295 632 dbSNP
rs1336011749 632 dbSNP
rs976498880 632 dbSNP
rs1426341232 636 dbSNP
rs1479745926 637 dbSNP
rs1336813439 639 dbSNP
rs922278153 641 dbSNP
rs1160119167 642 dbSNP
rs1382610651 642 dbSNP
rs1173632023 643 dbSNP
rs1301069877 644 dbSNP
rs200316134 644 dbSNP
rs35312568 644 dbSNP
rs371386364 644 dbSNP
rs386386191 644 dbSNP
rs375381988 645 dbSNP
rs1414664211 646 dbSNP
rs1243401683 651 dbSNP
rs141160112 652 dbSNP
rs1361080898 658 dbSNP
rs1451322018 659 dbSNP
rs1399108360 663 dbSNP
rs1298595042 664 dbSNP
rs558909659 670 dbSNP
rs1324643550 679 dbSNP
rs369993060 679 dbSNP
rs1342221974 681 dbSNP
rs1221681021 682 dbSNP
rs1320268391 697 dbSNP
rs951009441 699 dbSNP
rs983704535 700 dbSNP
rs1161432221 701 dbSNP
rs1274318107 713 dbSNP
rs908123917 714 dbSNP
rs1474438009 718 dbSNP
rs1194567092 722 dbSNP
rs796725211 722 dbSNP
rs886053103 722 dbSNP
rs1221122734 725 dbSNP
rs1490328303 725 dbSNP
rs181016187 730 dbSNP
rs1225100881 733 dbSNP
rs1317350031 733 dbSNP
rs1290088435 734 dbSNP
rs1316569657 734 dbSNP
rs886053104 734 dbSNP
rs1351806814 741 dbSNP
rs1217722935 747 dbSNP
rs147001691 748 dbSNP
rs1265881704 749 dbSNP
rs1219240456 751 dbSNP
rs1350706786 753 dbSNP
rs199634607 753 dbSNP
rs868475443 753 dbSNP
rs886053105 753 dbSNP
rs566414102 757 dbSNP
rs1199394085 763 dbSNP
rs1245596736 765 dbSNP
rs912251618 766 dbSNP
rs1173839998 769 dbSNP
rs963742342 773 dbSNP
rs1255992778 778 dbSNP
rs886053106 792 dbSNP
rs1421823605 796 dbSNP
rs1168554246 800 dbSNP
rs1480399590 808 dbSNP
rs1405268225 809 dbSNP
rs769226094 819 dbSNP
rs2325749 826 dbSNP
rs1232637145 838 dbSNP
rs1435708558 841 dbSNP
rs939867612 842 dbSNP
rs1057179395 855 dbSNP
rs762474156 857 dbSNP
rs1403002079 878 dbSNP
rs1038229743 880 dbSNP
rs1322856583 883 dbSNP
rs925187268 888 dbSNP
rs919742103 890 dbSNP
rs1331633245 892 dbSNP
rs1438633029 894 dbSNP
rs767554923 896 dbSNP
rs555442954 897 dbSNP
rs568969318 904 dbSNP
rs1962201 905 dbSNP
rs1357798375 910 dbSNP
rs1356438796 911 dbSNP
rs1332165724 914 dbSNP
rs949998847 915 dbSNP
rs1222260922 916 dbSNP
rs1291152801 921 dbSNP
rs1403975647 930 dbSNP
rs185504672 932 dbSNP
rs1453844416 942 dbSNP
rs886053107 946 dbSNP
rs1200287075 947 dbSNP
rs1481049414 948 dbSNP
rs1230741307 955 dbSNP
rs1438677950 956 dbSNP
rs1178917435 957 dbSNP
rs189494213 959 dbSNP
rs1175794383 960 dbSNP
rs779927183 965 dbSNP
rs1234213682 1013 dbSNP
rs904422101 1024 dbSNP
rs181553384 1028 dbSNP
rs1162446525 1035 dbSNP
rs1000094020 1044 dbSNP
rs1205555481 1045 dbSNP
rs114087393 1049 dbSNP
rs999329033 1060 dbSNP
rs963876308 1067 dbSNP
rs1326921197 1079 dbSNP
rs1033213471 1090 dbSNP
rs1310328888 1099 dbSNP
rs748979106 1102 dbSNP
rs1029361874 1105 dbSNP
rs893300354 1107 dbSNP
rs1380888645 1108 dbSNP
rs1338769822 1116 dbSNP
rs1244442996 1118 dbSNP
rs1177670586 1120 dbSNP
rs886053108 1124 dbSNP
rs982396160 1126 dbSNP
rs1157411431 1129 dbSNP
rs1402748596 1132 dbSNP
rs997056208 1134 dbSNP
rs1178905583 1136 dbSNP
rs754626928 1151 dbSNP
rs145323612 1152 dbSNP
rs955053950 1153 dbSNP
rs1483539591 1159 dbSNP
rs1241399275 1160 dbSNP
rs1194648942 1161 dbSNP
rs1255577939 1163 dbSNP
rs963979694 1165 dbSNP
rs747736053 1188 dbSNP
rs771480322 1197 dbSNP
rs1456961442 1200 dbSNP
rs1198761729 1208 dbSNP
rs1286467923 1210 dbSNP
rs1239557372 1221 dbSNP
rs1015656439 1233 dbSNP
rs973647964 1235 dbSNP
rs1396642841 1237 dbSNP
rs961182411 1242 dbSNP
rs1361891396 1247 dbSNP
rs1287677570 1248 dbSNP
rs145189700 1256 dbSNP
rs1433463749 1257 dbSNP
rs1361647535 1263 dbSNP
rs974222349 1269 dbSNP
rs1423619004 1272 dbSNP
rs919798773 1274 dbSNP
rs937788889 1279 dbSNP
rs990745612 1281 dbSNP
rs917812525 1286 dbSNP
rs773828185 1288 dbSNP
rs1166321763 1292 dbSNP
rs866212061 1294 dbSNP
rs1057271099 1298 dbSNP
rs950052491 1300 dbSNP
rs1045757217 1301 dbSNP
rs1184781315 1310 dbSNP
rs903172774 1313 dbSNP
rs934798349 1320 dbSNP
rs552370457 1346 dbSNP
rs771293608 1364 dbSNP
rs1263652546 1367 dbSNP
rs893311707 1372 dbSNP
rs1221379714 1373 dbSNP
rs996940153 1381 dbSNP
rs1294157513 1389 dbSNP
rs1245762277 1391 dbSNP
rs149121830 1394 dbSNP
rs1216886458 1413 dbSNP
rs1293515761 1413 dbSNP
rs891401236 1416 dbSNP
rs1408048021 1420 dbSNP
rs1302928598 1421 dbSNP
rs1402000790 1424 dbSNP
rs1399504095 1433 dbSNP
rs1466166866 1437 dbSNP
rs1008882385 1439 dbSNP
rs1403448995 1441 dbSNP
rs1367824483 1443 dbSNP
rs1294967503 1446 dbSNP
rs1015294282 1453 dbSNP
rs1333456109 1454 dbSNP
rs935922878 1456 dbSNP
rs150290786 1457 dbSNP
rs961331345 1457 dbSNP
rs1424205953 1460 dbSNP
rs1404092428 1471 dbSNP
rs796801439 1476 dbSNP
rs1335257599 1478 dbSNP
rs899700380 1486 dbSNP
rs998017863 1493 dbSNP
rs1249701624 1495 dbSNP
rs1206630050 1498 dbSNP
rs1319252963 1508 dbSNP
rs1283263567 1513 dbSNP
rs776945316 1514 dbSNP
rs1347857369 1517 dbSNP
rs1302399154 1520 dbSNP
rs1278078492 1533 dbSNP
rs1026701755 1546 dbSNP
rs568578486 1564 dbSNP
rs1218642721 1566 dbSNP
rs1295980885 1567 dbSNP
rs1003891321 1568 dbSNP
rs1259506777 1568 dbSNP
rs1482064616 1569 dbSNP
rs765547704 1569 dbSNP
rs1468161154 1570 dbSNP
rs1199573485 1572 dbSNP
rs1379208351 1580 dbSNP
rs143175555 1581 dbSNP
rs1418725338 1587 dbSNP
rs1248640378 1592 dbSNP
rs990631066 1595 dbSNP
rs1180612228 1620 dbSNP
rs763149268 1627 dbSNP
rs1458304368 1636 dbSNP
rs1262586385 1650 dbSNP
rs1443893012 1656 dbSNP
rs970700986 1667 dbSNP
rs7208554 1669 dbSNP
rs924636054 1672 dbSNP
rs1422767705 1673 dbSNP
rs1256960149 1675 dbSNP
rs974102029 1681 dbSNP
rs1034599245 1682 dbSNP
rs1334831303 1686 dbSNP
rs959157604 1690 dbSNP
rs569292493 1694 dbSNP
rs934621619 1696 dbSNP
rs1172898737 1709 dbSNP
rs564277151 1719 dbSNP
rs992977910 1722 dbSNP
rs1468178752 1723 dbSNP
rs1404177536 1750 dbSNP
rs886053109 1758 dbSNP
rs1173414653 1773 dbSNP
rs1404657533 1774 dbSNP
rs1361817546 1775 dbSNP
rs932719235 1777 dbSNP
rs886053110 1778 dbSNP
rs1160748921 1807 dbSNP
rs1049912829 1821 dbSNP
rs1297978723 1822 dbSNP
rs1242626282 1830 dbSNP
rs1181763064 1837 dbSNP
rs1341677186 1839 dbSNP
rs532983168 1840 dbSNP
rs1402463000 1841 dbSNP
rs886053111 1843 dbSNP
rs1309975806 1844 dbSNP
rs1349030101 1845 dbSNP
rs553430118 1850 dbSNP
rs1037651786 1860 dbSNP
rs566645126 1861 dbSNP
rs925946926 1862 dbSNP
rs1449783575 1871 dbSNP
rs1342219426 1878 dbSNP
rs936011983 1880 dbSNP
rs1040057889 1882 dbSNP
rs1986694 1884 dbSNP
rs1299745094 1887 dbSNP
rs1214090079 1888 dbSNP
rs933887793 1890 dbSNP
rs1161770560 1892 dbSNP
rs1026755654 1899 dbSNP
rs1473843345 1904 dbSNP
rs1050900467 1908 dbSNP
rs1193183046 1909 dbSNP
rs548976526 1922 dbSNP
rs959136387 1923 dbSNP
rs1488567314 1938 dbSNP
rs1265815955 1950 dbSNP
rs1011992218 1957 dbSNP
rs1290522662 1959 dbSNP
rs1226237338 1966 dbSNP
rs1265318563 1971 dbSNP
rs1432626591 1982 dbSNP
rs185694413 1988 dbSNP
rs1003922382 1992 dbSNP
rs1016636411 2000 dbSNP
rs970925711 2005 dbSNP
rs978040616 2006 dbSNP
rs1986693 2009 dbSNP
rs956082813 2024 dbSNP
rs990132223 2028 dbSNP
rs1158405015 2038 dbSNP
rs1035038241 2054 dbSNP
rs959003674 2056 dbSNP
rs1426364713 2066 dbSNP
rs993050123 2084 dbSNP
rs1301791178 2086 dbSNP
rs1024484299 2090 dbSNP
rs371698017 2105 dbSNP
rs1367542169 2106 dbSNP
rs1385673161 2107 dbSNP
rs376944611 2111 dbSNP
rs557590556 2119 dbSNP
rs1289975367 2129 dbSNP
rs912734171 2134 dbSNP
rs936025930 2135 dbSNP
rs1316010611 2138 dbSNP
rs1280068447 2139 dbSNP
rs975460454 2140 dbSNP
rs921236673 2146 dbSNP
rs148253026 2172 dbSNP
rs1438899135 2173 dbSNP
rs753734052 2174 dbSNP
rs1037299911 2189 dbSNP
rs1050930604 2190 dbSNP
rs897377683 2190 dbSNP
rs1285020542 2192 dbSNP
rs534139222 2198 dbSNP
rs190549163 2199 dbSNP
rs1469725769 2217 dbSNP
rs112926481 2219 dbSNP
rs1488124938 2220 dbSNP
rs1012003474 2224 dbSNP
rs1193218010 2233 dbSNP
rs939850004 2237 dbSNP
rs1246875711 2242 dbSNP
rs1180615132 2250 dbSNP
rs1456095260 2251 dbSNP
rs1191841874 2252 dbSNP
rs1024693306 2267 dbSNP
rs376451647 2268 dbSNP
rs999741349 2280 dbSNP
rs1438039632 2281 dbSNP
rs1276253852 2283 dbSNP
rs557440264 2286 dbSNP
rs1220703136 2289 dbSNP
rs76311835 2292 dbSNP
rs1279243421 2298 dbSNP
rs989348218 2312 dbSNP
rs1444798255 2313 dbSNP
rs1379297988 2314 dbSNP
rs1381181625 2315 dbSNP
rs1441874446 2317 dbSNP
rs1021619599 2319 dbSNP
rs1163133753 2321 dbSNP
rs1332056119 2332 dbSNP
rs1002338292 2335 dbSNP
rs1357889004 2336 dbSNP
rs1349738188 2337 dbSNP
rs1415449218 2338 dbSNP
rs954008702 2343 dbSNP
rs985518960 2347 dbSNP
rs912610985 2348 dbSNP
rs1239484951 2349 dbSNP
rs1178649041 2363 dbSNP
rs754788286 2376 dbSNP
rs973336914 2384 dbSNP
rs918752902 2396 dbSNP
rs931589895 2400 dbSNP
rs1312601036 2402 dbSNP
rs778694738 2406 dbSNP
rs1238264132 2412 dbSNP
rs1377212948 2417 dbSNP
rs894818576 2427 dbSNP
rs1310317763 2429 dbSNP
rs947671143 2433 dbSNP
rs747745181 2440 dbSNP
rs1310335664 2443 dbSNP
rs906297110 2453 dbSNP
rs999268964 2458 dbSNP
rs1024559235 2459 dbSNP
rs374343714 2466 dbSNP
rs1031286139 2468 dbSNP
rs967570266 2471 dbSNP
rs879381213 2472 dbSNP
rs1164552167 2474 dbSNP
rs893638037 2479 dbSNP
rs1381737868 2481 dbSNP
rs556101569 2491 dbSNP
rs1422780596 2497 dbSNP
rs1183596525 2500 dbSNP
rs1483529820 2504 dbSNP
rs1241309890 2506 dbSNP
rs1214127776 2507 dbSNP
rs1456467530 2508 dbSNP
rs957491818 2509 dbSNP
rs115786729 2511 dbSNP
rs975871489 2517 dbSNP
rs1198112274 2518 dbSNP
rs1320063833 2519 dbSNP
rs545434650 2520 dbSNP
rs1238955326 2525 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agguaguccucaguaCCUUCGa 5'
                         |||||| 
Target 5' ------------cagGGAAGCa 3'
1 - 10
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000225573.4 | 3UTR | CAGGGAAGCAGGUUUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC 0.808 0.03 0.886 0.01 6 Click to see details
LUSC 0.4 0.16 0.190 0.33 8 Click to see details
BLCA 0.584 0.3 0.500 0.33 3 Click to see details
BRCA -0.043 0.45 0.070 0.41 12 Click to see details
BRCA -0.043 0.45 0.070 0.41 12 Click to see details
BRCA -0.043 0.45 0.070 0.41 12 Click to see details
BRCA -0.043 0.45 0.070 0.41 12 Click to see details
84 hsa-miR-2115-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT155281 IFNAR2 interferon alpha and beta receptor subunit 2 2 6
MIRT257301 MYLIP myosin regulatory light chain interacting protein 2 8
MIRT441907 SEPN1 selenoprotein N 2 2
MIRT442300 ZNF496 zinc finger protein 496 2 2
MIRT468235 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT469331 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT470203 PSAT1 phosphoserine aminotransferase 1 2 6
MIRT475945 GXYLT1 glucoside xylosyltransferase 1 2 4
MIRT481449 ARRB2 arrestin beta 2 2 2
MIRT497440 SLC16A10 solute carrier family 16 member 10 2 2
MIRT498270 KIAA1644 KIAA1644 2 2
MIRT499225 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT501742 NSD1 nuclear receptor binding SET domain protein 1 2 2
MIRT501762 NRF1 nuclear respiratory factor 1 2 6
MIRT527902 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT528559 DNAAF3 dynein axonemal assembly factor 3 2 2
MIRT531252 PDF peptide deformylase, mitochondrial 2 2
MIRT539490 ACTN4 actinin alpha 4 2 2
MIRT550683 YARS tyrosyl-tRNA synthetase 2 2
MIRT573441 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT616740 DCTN5 dynactin subunit 5 2 2
MIRT617626 RAB3IP RAB3A interacting protein 2 2
MIRT620780 MT1A metallothionein 1A 2 2
MIRT623174 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT624880 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT625799 MDC1 mediator of DNA damage checkpoint 1 2 2
MIRT629790 CHRFAM7A CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion 2 2
MIRT630535 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT630762 ZNF445 zinc finger protein 445 2 2
MIRT630921 UNC93A unc-93 homolog A 2 2
MIRT630949 PANK1 pantothenate kinase 1 2 2
MIRT631688 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT633898 FGF10 fibroblast growth factor 10 2 2
MIRT635935 PLA2G12A phospholipase A2 group XIIA 2 2
MIRT636177 THBD thrombomodulin 2 2
MIRT636730 AFAP1 actin filament associated protein 1 2 2
MIRT638038 SHPK sedoheptulokinase 2 2
MIRT639164 LAMTOR3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 2 2
MIRT639260 MANEAL mannosidase endo-alpha like 2 2
MIRT639327 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT639849 YY1 YY1 transcription factor 2 2
MIRT641474 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT642783 CHCHD3 coiled-coil-helix-coiled-coil-helix domain containing 3 2 2
MIRT643653 MYOCD myocardin 2 2
MIRT645717 PTPRF protein tyrosine phosphatase, receptor type F 2 2
MIRT648018 SLCO4C1 solute carrier organic anion transporter family member 4C1 2 2
MIRT648236 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT648563 MEMO1 mediator of cell motility 1 2 2
MIRT648731 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT650179 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT650721 TNFSF8 TNF superfamily member 8 2 2
MIRT652179 TRIM44 tripartite motif containing 44 2 2
MIRT654272 RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase 2 2
MIRT654493 RAD51L3-RFFL RAD51L3-RFFL readthrough 2 2
MIRT654861 PPM1F protein phosphatase, Mg2+/Mn2+ dependent 1F 2 2
MIRT656392 MCU mitochondrial calcium uniporter 2 2
MIRT656623 LRRC15 leucine rich repeat containing 15 2 2
MIRT657085 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT659793 CBLB Cbl proto-oncogene B 2 2
MIRT660155 BRCC3 BRCA1/BRCA2-containing complex subunit 3 2 2
MIRT662444 SERPINB5 serpin family B member 5 2 2
MIRT663116 SPTA1 spectrin alpha, erythrocytic 1 2 2
MIRT665759 TMEM43 transmembrane protein 43 2 2
MIRT666357 SIKE1 suppressor of IKBKE 1 2 2
MIRT668521 ESRRG estrogen related receptor gamma 2 2
MIRT677776 FKTN fukutin 2 2
MIRT678900 TTLL12 tubulin tyrosine ligase like 12 2 2
MIRT702825 HOOK3 hook microtubule tethering protein 3 2 2
MIRT704424 CTNNBIP1 catenin beta interacting protein 1 2 2
MIRT709470 KRTAP19-1 keratin associated protein 19-1 2 2
MIRT710939 MRPL45 mitochondrial ribosomal protein L45 2 2
MIRT713306 TYRP1 tyrosinase related protein 1 2 2
MIRT716932 FAM13A family with sequence similarity 13 member A 2 2
MIRT717539 PYGO2 pygopus family PHD finger 2 2 2
MIRT718060 CYP3A5 cytochrome P450 family 3 subfamily A member 5 2 2
MIRT718934 TRIM66 tripartite motif containing 66 2 2
MIRT719770 ZNF236 zinc finger protein 236 2 2
MIRT720164 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT721280 RAD54L2 RAD54 like 2 2 2
MIRT721359 ENTHD1 ENTH domain containing 1 2 2
MIRT721506 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT721920 LINGO2 leucine rich repeat and Ig domain containing 2 2 2
MIRT722791 FUT4 fucosyltransferase 4 2 2
MIRT723933 SVOP SV2 related protein 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-2115 Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-mir-2115 Decitabine 451668 approved sensitive tissue (esopheageal cancer)
hsa-miR-2115-5p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-2115-5p Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)
hsa-miR-2115-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-2115-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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