pre-miRNA Information
pre-miRNA hsa-mir-4708   
Genomic Coordinates chr14: 65335117 - 65335183
Description Homo sapiens miR-4708 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4708-5p
Sequence 9| AGAGAUGCCGCCUUGCUCCUU |29
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1017378847 9 dbSNP
rs750825813 10 dbSNP
rs1297395738 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PNPO   
Synonyms HEL-S-302, PDXPO
Description pyridoxamine 5'-phosphate oxidase
Transcript NM_018129   
Expression
Putative miRNA Targets on PNPO
3'UTR of PNPO
(miRNA target sites are highlighted)
>PNPO|NM_018129|3'UTR
   1 CTCTGGGACCTGCTGGCCCAGAGTGGAGCTAGGGCTAGGTGTCAAGAGAGGGTGTGGGATTGGGACCCAGGCCCTTCTTT
  81 CTAAACTCAACCCATTTCCCTCCCTACCCCTTATCTTCAGGACTCTTCAGAGCTAATCCTCTAAGTTCTCTGTACTCAGT
 161 TGGTTCTCAGTTAGCTGGTCAAGTGGAGTGTAATGGTGGCGTAGAGAATCACAAATGGAAAATAATTCCATAATTATTTT
 241 TTTGACCTTGCCTATGATTGATTAGGATAGCTCCCTCTAGGGGTAGCAGCCGGTGTGACTCCCTTTCTGGTGACAGACAG
 321 GGCCCCAGCAGCCCTGTCTGTTACCATGTGAGTCATACTGGCCAAAGCTTAGTCCTAGCATATGCACCTGAGCCAACCTG
 401 GCCAATCAGATTGTTTTGTCAATAATTTGAAATTTGAACTGGAGAGATCCAGAACCTTGGGAGTCATTAAAGCCAAGTCA
 481 TTCATAGCAGCCAGGAAACAATAGGAACCAAAAGCCTCTGCCTGCTGCTATTGCAATTCCCAGGATCTCTCCTTCCCTGG
 561 ATCCCTCCCTCCCAGGTCTGGGCTGTGCAGTTCCTCCCCCTGCCTTAAAACACCCCACTATCTCTGTAAAGTCTCTCTCT
 641 CTCTTTTTTTTTTTTTTACTTAATCTAGCTAGAATCTATTTCTGTTGATTACAACTTAACTAACTCATTTACGGATAGGA
 721 CTTTTTTTTTTCTTTTTTTCTTTTTTCTTTTCTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCACCCAGGCTGGAGTG
 801 CAGTGGTGTGATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTG
 881 GGACTACAGGCACACGCCACCACACCCAACTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGAT
 961 TGTCTCCATCTCTTGACCTTGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACACCC
1041 AGCGAGACGGGGTTTCATTATGTTGGCCAGGCTGGTCTCCAACTCCTGACCTAAAGTGATCTGCCCGCCTTGGCCTCCCA
1121 AAGTGCTGGGATTACAGACATGAGCCACCACGCTTGGCCGGGATAGTATATTTTTATAGCACTTCCCCTACTGATTGCTG
1201 CCTTCTCTGTGGCTACAAGGGACCCACAGAATTACAGGGAAGTTACAGGGAAGCAGGTTTCATCTCAATATTGGGAGAGA
1281 TTTCAAACAATCACACCTGCCTGAGAAGGAGTGGGCTGTCACTAGGAATTTTTATTCCCAGTCCGTCAGGAATTTTGTAG
1361 AAGGGCTTCATGTGCTGGTACCAATAGGACAGGAAGATTTTAATCAGCTTTACTATCTATGTTTTTTTATGGAAACTGTG
1441 TGTATGTATACATACATTTTCCAAAAAGAAAAATTAAATGATTATAGAGATTATGTTTTTCAGACTACTCACGTATCTGC
1521 TTTTCTTACTCCCCACCTCTGCTGATAATTCCTAGTTCATTGGTTTTTCCCCCACACTGGAATTACCTGGGGAGCTTAAA
1601 AAACCCTGATGCCTGGGTCCCACCCTCAGAGATGATTGAACCAGCCTGGCCAGCATGGCAAAACCCTGTCTCTACTATGA
1681 TATGAATGCAGCCTGGGCACTGGGAAATTTAAAAACTCCCCAGATAATTCTGTGCAGCCAAGGTTGAGACCTCCTAGTCT
1761 AGAGCTTTGCTATACACAGGGTGGTCCACAAGCCAGGAGCATCAGCATCACTTGGCAGCGCCTTAGAGATTCAGACCCCA
1841 GACCCACTGAATCTGACCCTGCATTTTCACTAGACCCCAGGTGATCAGCTGCACTAGACTCAACCTCTAAACCAAGACCT
1921 CCCACCCTCACAGTCTATGATCCTTTAGTGACCCTCAGCTGAGTCCTGTGCTGAACTGTGTTTGTTCTCCTTGAGCACAT
2001 GCCCGCTAACCAGGGACAGACTGGATGAGCAAGCAACCTGCTGGCTATGGAGAAGAGCCAGGCTGGGTAAATGTTTGCTG
2081 TGACTAAGCCAGGATCAAAGAACTGCCTGTTGCTTGCACTGGCTGGCACTGAGCTTGCCACTCTGTGAACTGTGCTTCCT
2161 TCCCCTGCATGGACCTGTGCCTCAGTCACTATTATCCGCAGGCCTTCTCCAAGGGCAGCCCTCTCCTTGTTTATCCCTCT
2241 TAAGCCTGCGTGCAGGAAGGCACATTAACCCTGTGGCCCCCTGCAGGCAGGAGGGTGTTGGGTGCCCTTACCTACCTTGC
2321 CCTTTTTCTTGTACCGTAGGCTGTGCCGTTTATGAGTAAGTGATGTGTGTCTGTGTGTGTGTCTAGAAGTGCTGCACTCA
2401 CCTTGTGTTATTGGAGGTTGTGTAACCCCCTAGCTTTGAGCCTGGTCTCAGATGTTCCTTTTCCGTTCTCTGTCCAGCCG
2481 TTACCGCCCCCAGTCTGTAATAAAAGCCTATCAGCCGTGCACTTTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuCCUCGUUCCGCCGUAGAGa 5'
            | ||| |||:  |||||| 
Target 5' ggGAAGC-AGGTTTCATCTCa 3'
1248 - 1267 130.00 -16.30
2
miRNA  3' uuCCUCGUUCCGCCGUAGAGa 5'
            ||||||   | ||||| | 
Target 5' caGGAGCA--TCAGCATCACt 3'
1794 - 1812 127.00 -16.20
3
miRNA  3' uuccucguuccgccGUAGAGa 5'
                        |||||| 
Target 5' gccaggattgtctcCATCTCt 3'
953 - 973 120.00 -10.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
323911 73 ClinVar
888577 85 ClinVar
323912 107 ClinVar
888578 142 ClinVar
323913 201 ClinVar
323914 273 ClinVar
323915 282 ClinVar
1195479 294 ClinVar
323916 302 ClinVar
890277 342 ClinVar
323917 353 ClinVar
323918 513 ClinVar
323919 612 ClinVar
323920 644 ClinVar
890278 644 ClinVar
323921 722 ClinVar
890279 730 ClinVar
323922 734 ClinVar
323923 753 ClinVar
890841 757 ClinVar
323924 792 ClinVar
890842 819 ClinVar
323925 826 ClinVar
890843 878 ClinVar
323926 896 ClinVar
323927 905 ClinVar
323928 946 ClinVar
323929 959 ClinVar
323930 1049 ClinVar
323931 1124 ClinVar
323932 1152 ClinVar
892085 1191 ClinVar
323933 1394 ClinVar
892086 1514 ClinVar
323934 1581 ClinVar
323935 1669 ClinVar
323936 1758 ClinVar
323937 1778 ClinVar
888624 1804 ClinVar
323938 1843 ClinVar
323939 1884 ClinVar
888625 1966 ClinVar
323940 2009 ClinVar
890329 2192 ClinVar
890330 2292 ClinVar
323941 2491 ClinVar
COSN30474447 22 COSMIC
COSN30459246 71 COSMIC
COSN21137953 72 COSMIC
COSN30151121 78 COSMIC
COSN30533668 103 COSMIC
COSN30105494 199 COSMIC
COSN18915912 275 COSMIC
COSN20114072 658 COSMIC
COSN27219760 658 COSMIC
COSN28974958 658 COSMIC
COSN20114074 765 COSMIC
COSN18861192 766 COSMIC
COSN8837708 831 COSMIC
COSN5179275 833 COSMIC
COSN24608318 1292 COSMIC
COSN8837709 1340 COSMIC
COSN21961528 1621 COSMIC
COSN8243071 1937 COSMIC
COSN6105072 1993 COSMIC
COSN32058054 2009 COSMIC
COSN25787514 2025 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1172298849 13 dbSNP
rs1404112256 18 dbSNP
rs1371210143 19 dbSNP
rs1338789994 31 dbSNP
rs1461423845 34 dbSNP
rs902078664 35 dbSNP
rs933512450 40 dbSNP
rs779493771 41 dbSNP
rs1450692099 45 dbSNP
rs748610077 53 dbSNP
rs1047900767 54 dbSNP
rs886578063 58 dbSNP
rs1409256328 64 dbSNP
rs958802276 65 dbSNP
rs1181621122 67 dbSNP
rs762247051 71 dbSNP
rs535512907 73 dbSNP
rs1205048579 85 dbSNP
rs1014335830 95 dbSNP
rs1006267889 99 dbSNP
rs1406277505 102 dbSNP
rs1167375782 104 dbSNP
rs772682275 105 dbSNP
rs117508783 107 dbSNP
rs1318643237 116 dbSNP
rs1307458334 119 dbSNP
rs575866429 126 dbSNP
rs967569458 142 dbSNP
rs1380900277 144 dbSNP
rs370246326 154 dbSNP
rs978080803 161 dbSNP
rs1297102045 170 dbSNP
rs1377070776 171 dbSNP
rs905900161 178 dbSNP
rs1164524277 179 dbSNP
rs926193300 186 dbSNP
rs1383025990 191 dbSNP
rs761169544 201 dbSNP
rs1035636905 202 dbSNP
rs1312411656 203 dbSNP
rs1184199953 215 dbSNP
rs959965529 224 dbSNP
rs766717524 229 dbSNP
rs1220587378 237 dbSNP
rs975027145 257 dbSNP
rs1357076165 267 dbSNP
rs920913638 268 dbSNP
rs933774716 272 dbSNP
rs189065288 273 dbSNP
rs369895318 276 dbSNP
rs1203808748 278 dbSNP
rs968500926 279 dbSNP
rs1363307393 282 dbSNP
rs886053102 283 dbSNP
rs1201883011 284 dbSNP
rs978574512 284 dbSNP
rs576462449 285 dbSNP
rs910954567 287 dbSNP
rs1473254934 292 dbSNP
rs939834693 293 dbSNP
rs111534752 294 dbSNP
rs1417895635 295 dbSNP
rs578179754 300 dbSNP
rs540606185 302 dbSNP
rs1261793749 304 dbSNP
rs1198648980 310 dbSNP
rs933585164 312 dbSNP
rs868226488 324 dbSNP
rs1222873755 329 dbSNP
rs1341728775 333 dbSNP
rs1047930475 334 dbSNP
rs1249796932 334 dbSNP
rs1308203735 335 dbSNP
rs1002103272 336 dbSNP
rs78358763 342 dbSNP
rs529271805 348 dbSNP
rs16949676 353 dbSNP
rs1358149433 355 dbSNP
rs1395358735 359 dbSNP
rs754278955 359 dbSNP
rs1037820283 376 dbSNP
rs1014388301 378 dbSNP
rs1373211226 417 dbSNP
rs1175068988 446 dbSNP
rs905926135 453 dbSNP
rs1024355455 471 dbSNP
rs1285720695 473 dbSNP
rs967960175 478 dbSNP
rs999007338 479 dbSNP
rs867697340 484 dbSNP
rs1057445137 485 dbSNP
rs1359671145 488 dbSNP
rs1213885554 503 dbSNP
rs562654007 505 dbSNP
rs375738552 513 dbSNP
rs7220104 513 dbSNP
rs1010159795 515 dbSNP
rs1262608090 515 dbSNP
rs528733484 521 dbSNP
rs1284437606 523 dbSNP
rs550360186 527 dbSNP
rs752776194 528 dbSNP
rs920967474 531 dbSNP
rs1392829349 533 dbSNP
rs1396692073 548 dbSNP
rs1221698578 549 dbSNP
rs986498791 556 dbSNP
rs1335496578 570 dbSNP
rs1467737440 574 dbSNP
rs1408239109 580 dbSNP
rs1177124462 581 dbSNP
rs1469535773 582 dbSNP
rs1361908571 583 dbSNP
rs566516382 583 dbSNP
rs1000423388 584 dbSNP
rs570588023 585 dbSNP
rs1419901732 586 dbSNP
rs527507323 586 dbSNP
rs1242717875 587 dbSNP
rs955000810 590 dbSNP
rs1018045685 591 dbSNP
rs1462753589 599 dbSNP
rs533218088 608 dbSNP
rs7219707 612 dbSNP
rs1205130292 615 dbSNP
rs1349141871 617 dbSNP
rs1281650515 621 dbSNP
rs1313857295 632 dbSNP
rs1336011749 632 dbSNP
rs976498880 632 dbSNP
rs1426341232 636 dbSNP
rs1479745926 637 dbSNP
rs1336813439 639 dbSNP
rs922278153 641 dbSNP
rs1160119167 642 dbSNP
rs1382610651 642 dbSNP
rs1173632023 643 dbSNP
rs1301069877 644 dbSNP
rs200316134 644 dbSNP
rs35312568 644 dbSNP
rs371386364 644 dbSNP
rs386386191 644 dbSNP
rs375381988 645 dbSNP
rs1414664211 646 dbSNP
rs1243401683 651 dbSNP
rs141160112 652 dbSNP
rs1361080898 658 dbSNP
rs1451322018 659 dbSNP
rs1399108360 663 dbSNP
rs1298595042 664 dbSNP
rs558909659 670 dbSNP
rs1324643550 679 dbSNP
rs369993060 679 dbSNP
rs1342221974 681 dbSNP
rs1221681021 682 dbSNP
rs1320268391 697 dbSNP
rs951009441 699 dbSNP
rs983704535 700 dbSNP
rs1161432221 701 dbSNP
rs1274318107 713 dbSNP
rs908123917 714 dbSNP
rs1474438009 718 dbSNP
rs1194567092 722 dbSNP
rs796725211 722 dbSNP
rs886053103 722 dbSNP
rs1221122734 725 dbSNP
rs1490328303 725 dbSNP
rs181016187 730 dbSNP
rs1225100881 733 dbSNP
rs1317350031 733 dbSNP
rs1290088435 734 dbSNP
rs1316569657 734 dbSNP
rs886053104 734 dbSNP
rs1351806814 741 dbSNP
rs1217722935 747 dbSNP
rs147001691 748 dbSNP
rs1265881704 749 dbSNP
rs1219240456 751 dbSNP
rs1350706786 753 dbSNP
rs199634607 753 dbSNP
rs868475443 753 dbSNP
rs886053105 753 dbSNP
rs566414102 757 dbSNP
rs1199394085 763 dbSNP
rs1245596736 765 dbSNP
rs912251618 766 dbSNP
rs1173839998 769 dbSNP
rs963742342 773 dbSNP
rs1255992778 778 dbSNP
rs886053106 792 dbSNP
rs1421823605 796 dbSNP
rs1168554246 800 dbSNP
rs1480399590 808 dbSNP
rs1405268225 809 dbSNP
rs769226094 819 dbSNP
rs2325749 826 dbSNP
rs1232637145 838 dbSNP
rs1435708558 841 dbSNP
rs939867612 842 dbSNP
rs1057179395 855 dbSNP
rs762474156 857 dbSNP
rs1403002079 878 dbSNP
rs1038229743 880 dbSNP
rs1322856583 883 dbSNP
rs925187268 888 dbSNP
rs919742103 890 dbSNP
rs1331633245 892 dbSNP
rs1438633029 894 dbSNP
rs767554923 896 dbSNP
rs555442954 897 dbSNP
rs568969318 904 dbSNP
rs1962201 905 dbSNP
rs1357798375 910 dbSNP
rs1356438796 911 dbSNP
rs1332165724 914 dbSNP
rs949998847 915 dbSNP
rs1222260922 916 dbSNP
rs1291152801 921 dbSNP
rs1403975647 930 dbSNP
rs185504672 932 dbSNP
rs1453844416 942 dbSNP
rs886053107 946 dbSNP
rs1200287075 947 dbSNP
rs1481049414 948 dbSNP
rs1230741307 955 dbSNP
rs1438677950 956 dbSNP
rs1178917435 957 dbSNP
rs189494213 959 dbSNP
rs1175794383 960 dbSNP
rs779927183 965 dbSNP
rs1234213682 1013 dbSNP
rs904422101 1024 dbSNP
rs181553384 1028 dbSNP
rs1162446525 1035 dbSNP
rs1000094020 1044 dbSNP
rs1205555481 1045 dbSNP
rs114087393 1049 dbSNP
rs999329033 1060 dbSNP
rs963876308 1067 dbSNP
rs1326921197 1079 dbSNP
rs1033213471 1090 dbSNP
rs1310328888 1099 dbSNP
rs748979106 1102 dbSNP
rs1029361874 1105 dbSNP
rs893300354 1107 dbSNP
rs1380888645 1108 dbSNP
rs1338769822 1116 dbSNP
rs1244442996 1118 dbSNP
rs1177670586 1120 dbSNP
rs886053108 1124 dbSNP
rs982396160 1126 dbSNP
rs1157411431 1129 dbSNP
rs1402748596 1132 dbSNP
rs997056208 1134 dbSNP
rs1178905583 1136 dbSNP
rs754626928 1151 dbSNP
rs145323612 1152 dbSNP
rs955053950 1153 dbSNP
rs1483539591 1159 dbSNP
rs1241399275 1160 dbSNP
rs1194648942 1161 dbSNP
rs1255577939 1163 dbSNP
rs963979694 1165 dbSNP
rs747736053 1188 dbSNP
rs771480322 1197 dbSNP
rs1456961442 1200 dbSNP
rs1198761729 1208 dbSNP
rs1286467923 1210 dbSNP
rs1239557372 1221 dbSNP
rs1015656439 1233 dbSNP
rs973647964 1235 dbSNP
rs1396642841 1237 dbSNP
rs961182411 1242 dbSNP
rs1361891396 1247 dbSNP
rs1287677570 1248 dbSNP
rs145189700 1256 dbSNP
rs1433463749 1257 dbSNP
rs1361647535 1263 dbSNP
rs974222349 1269 dbSNP
rs1423619004 1272 dbSNP
rs919798773 1274 dbSNP
rs937788889 1279 dbSNP
rs990745612 1281 dbSNP
rs917812525 1286 dbSNP
rs773828185 1288 dbSNP
rs1166321763 1292 dbSNP
rs866212061 1294 dbSNP
rs1057271099 1298 dbSNP
rs950052491 1300 dbSNP
rs1045757217 1301 dbSNP
rs1184781315 1310 dbSNP
rs903172774 1313 dbSNP
rs934798349 1320 dbSNP
rs552370457 1346 dbSNP
rs771293608 1364 dbSNP
rs1263652546 1367 dbSNP
rs893311707 1372 dbSNP
rs1221379714 1373 dbSNP
rs996940153 1381 dbSNP
rs1294157513 1389 dbSNP
rs1245762277 1391 dbSNP
rs149121830 1394 dbSNP
rs1216886458 1413 dbSNP
rs1293515761 1413 dbSNP
rs891401236 1416 dbSNP
rs1408048021 1420 dbSNP
rs1302928598 1421 dbSNP
rs1402000790 1424 dbSNP
rs1399504095 1433 dbSNP
rs1466166866 1437 dbSNP
rs1008882385 1439 dbSNP
rs1403448995 1441 dbSNP
rs1367824483 1443 dbSNP
rs1294967503 1446 dbSNP
rs1015294282 1453 dbSNP
rs1333456109 1454 dbSNP
rs935922878 1456 dbSNP
rs150290786 1457 dbSNP
rs961331345 1457 dbSNP
rs1424205953 1460 dbSNP
rs1404092428 1471 dbSNP
rs796801439 1476 dbSNP
rs1335257599 1478 dbSNP
rs899700380 1486 dbSNP
rs998017863 1493 dbSNP
rs1249701624 1495 dbSNP
rs1206630050 1498 dbSNP
rs1319252963 1508 dbSNP
rs1283263567 1513 dbSNP
rs776945316 1514 dbSNP
rs1347857369 1517 dbSNP
rs1302399154 1520 dbSNP
rs1278078492 1533 dbSNP
rs1026701755 1546 dbSNP
rs568578486 1564 dbSNP
rs1218642721 1566 dbSNP
rs1295980885 1567 dbSNP
rs1003891321 1568 dbSNP
rs1259506777 1568 dbSNP
rs1482064616 1569 dbSNP
rs765547704 1569 dbSNP
rs1468161154 1570 dbSNP
rs1199573485 1572 dbSNP
rs1379208351 1580 dbSNP
rs143175555 1581 dbSNP
rs1418725338 1587 dbSNP
rs1248640378 1592 dbSNP
rs990631066 1595 dbSNP
rs1180612228 1620 dbSNP
rs763149268 1627 dbSNP
rs1458304368 1636 dbSNP
rs1262586385 1650 dbSNP
rs1443893012 1656 dbSNP
rs970700986 1667 dbSNP
rs7208554 1669 dbSNP
rs924636054 1672 dbSNP
rs1422767705 1673 dbSNP
rs1256960149 1675 dbSNP
rs974102029 1681 dbSNP
rs1034599245 1682 dbSNP
rs1334831303 1686 dbSNP
rs959157604 1690 dbSNP
rs569292493 1694 dbSNP
rs934621619 1696 dbSNP
rs1172898737 1709 dbSNP
rs564277151 1719 dbSNP
rs992977910 1722 dbSNP
rs1468178752 1723 dbSNP
rs1404177536 1750 dbSNP
rs886053109 1758 dbSNP
rs1173414653 1773 dbSNP
rs1404657533 1774 dbSNP
rs1361817546 1775 dbSNP
rs932719235 1777 dbSNP
rs886053110 1778 dbSNP
rs1160748921 1807 dbSNP
rs1049912829 1821 dbSNP
rs1297978723 1822 dbSNP
rs1242626282 1830 dbSNP
rs1181763064 1837 dbSNP
rs1341677186 1839 dbSNP
rs532983168 1840 dbSNP
rs1402463000 1841 dbSNP
rs886053111 1843 dbSNP
rs1309975806 1844 dbSNP
rs1349030101 1845 dbSNP
rs553430118 1850 dbSNP
rs1037651786 1860 dbSNP
rs566645126 1861 dbSNP
rs925946926 1862 dbSNP
rs1449783575 1871 dbSNP
rs1342219426 1878 dbSNP
rs936011983 1880 dbSNP
rs1040057889 1882 dbSNP
rs1986694 1884 dbSNP
rs1299745094 1887 dbSNP
rs1214090079 1888 dbSNP
rs933887793 1890 dbSNP
rs1161770560 1892 dbSNP
rs1026755654 1899 dbSNP
rs1473843345 1904 dbSNP
rs1050900467 1908 dbSNP
rs1193183046 1909 dbSNP
rs548976526 1922 dbSNP
rs959136387 1923 dbSNP
rs1488567314 1938 dbSNP
rs1265815955 1950 dbSNP
rs1011992218 1957 dbSNP
rs1290522662 1959 dbSNP
rs1226237338 1966 dbSNP
rs1265318563 1971 dbSNP
rs1432626591 1982 dbSNP
rs185694413 1988 dbSNP
rs1003922382 1992 dbSNP
rs1016636411 2000 dbSNP
rs970925711 2005 dbSNP
rs978040616 2006 dbSNP
rs1986693 2009 dbSNP
rs956082813 2024 dbSNP
rs990132223 2028 dbSNP
rs1158405015 2038 dbSNP
rs1035038241 2054 dbSNP
rs959003674 2056 dbSNP
rs1426364713 2066 dbSNP
rs993050123 2084 dbSNP
rs1301791178 2086 dbSNP
rs1024484299 2090 dbSNP
rs371698017 2105 dbSNP
rs1367542169 2106 dbSNP
rs1385673161 2107 dbSNP
rs376944611 2111 dbSNP
rs557590556 2119 dbSNP
rs1289975367 2129 dbSNP
rs912734171 2134 dbSNP
rs936025930 2135 dbSNP
rs1316010611 2138 dbSNP
rs1280068447 2139 dbSNP
rs975460454 2140 dbSNP
rs921236673 2146 dbSNP
rs148253026 2172 dbSNP
rs1438899135 2173 dbSNP
rs753734052 2174 dbSNP
rs1037299911 2189 dbSNP
rs1050930604 2190 dbSNP
rs897377683 2190 dbSNP
rs1285020542 2192 dbSNP
rs534139222 2198 dbSNP
rs190549163 2199 dbSNP
rs1469725769 2217 dbSNP
rs112926481 2219 dbSNP
rs1488124938 2220 dbSNP
rs1012003474 2224 dbSNP
rs1193218010 2233 dbSNP
rs939850004 2237 dbSNP
rs1246875711 2242 dbSNP
rs1180615132 2250 dbSNP
rs1456095260 2251 dbSNP
rs1191841874 2252 dbSNP
rs1024693306 2267 dbSNP
rs376451647 2268 dbSNP
rs999741349 2280 dbSNP
rs1438039632 2281 dbSNP
rs1276253852 2283 dbSNP
rs557440264 2286 dbSNP
rs1220703136 2289 dbSNP
rs76311835 2292 dbSNP
rs1279243421 2298 dbSNP
rs989348218 2312 dbSNP
rs1444798255 2313 dbSNP
rs1379297988 2314 dbSNP
rs1381181625 2315 dbSNP
rs1441874446 2317 dbSNP
rs1021619599 2319 dbSNP
rs1163133753 2321 dbSNP
rs1332056119 2332 dbSNP
rs1002338292 2335 dbSNP
rs1357889004 2336 dbSNP
rs1349738188 2337 dbSNP
rs1415449218 2338 dbSNP
rs954008702 2343 dbSNP
rs985518960 2347 dbSNP
rs912610985 2348 dbSNP
rs1239484951 2349 dbSNP
rs1178649041 2363 dbSNP
rs754788286 2376 dbSNP
rs973336914 2384 dbSNP
rs918752902 2396 dbSNP
rs931589895 2400 dbSNP
rs1312601036 2402 dbSNP
rs778694738 2406 dbSNP
rs1238264132 2412 dbSNP
rs1377212948 2417 dbSNP
rs894818576 2427 dbSNP
rs1310317763 2429 dbSNP
rs947671143 2433 dbSNP
rs747745181 2440 dbSNP
rs1310335664 2443 dbSNP
rs906297110 2453 dbSNP
rs999268964 2458 dbSNP
rs1024559235 2459 dbSNP
rs374343714 2466 dbSNP
rs1031286139 2468 dbSNP
rs967570266 2471 dbSNP
rs879381213 2472 dbSNP
rs1164552167 2474 dbSNP
rs893638037 2479 dbSNP
rs1381737868 2481 dbSNP
rs556101569 2491 dbSNP
rs1422780596 2497 dbSNP
rs1183596525 2500 dbSNP
rs1483529820 2504 dbSNP
rs1241309890 2506 dbSNP
rs1214127776 2507 dbSNP
rs1456467530 2508 dbSNP
rs957491818 2509 dbSNP
rs115786729 2511 dbSNP
rs975871489 2517 dbSNP
rs1198112274 2518 dbSNP
rs1320063833 2519 dbSNP
rs545434650 2520 dbSNP
rs1238955326 2525 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuccucGUUCCGCCGU--AGAGa 5'
                ||:||  |||  |:|| 
Target 5' ------CAGGGAAGCAGGUUUCa 3'
1 - 17
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_018129 | 3UTR | CAUCUCAAUAUUGGGAGAGAUUUCAAACAAUCACACCUGCCUGAGAAGGAGUGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000225573.4 | 3UTR | CAGGGAAGCAGGUUUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
94 hsa-miR-4708-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT095681 RBM27 RNA binding motif protein 27 2 4
MIRT104033 USP42 ubiquitin specific peptidase 42 2 6
MIRT114773 CMPK1 cytidine/uridine monophosphate kinase 1 2 2
MIRT246923 CCND1 cyclin D1 2 2
MIRT392569 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT443949 LRIT3 leucine rich repeat, Ig-like and transmembrane domains 3 2 2
MIRT446695 PAPPA pappalysin 1 2 2
MIRT447383 VOPP1 vesicular, overexpressed in cancer, prosurvival protein 1 2 2
MIRT449321 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT449717 C1orf61 chromosome 1 open reading frame 61 2 2
MIRT449738 TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 2 2
MIRT450531 PGLS 6-phosphogluconolactonase 2 2
MIRT455650 YARS tyrosyl-tRNA synthetase 2 2
MIRT458036 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT463468 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT466677 TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D 2 4
MIRT467789 SLC2A14 solute carrier family 2 member 14 2 2
MIRT468167 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT468652 SECISBP2L SECIS binding protein 2 like 2 6
MIRT469380 RER1 retention in endoplasmic reticulum sorting receptor 1 2 2
MIRT470346 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT472418 NCKAP1 NCK associated protein 1 2 2
MIRT474612 KLF3 Kruppel like factor 3 2 2
MIRT478703 CSRNP2 cysteine and serine rich nuclear protein 2 2 2
MIRT481008 BBC3 BCL2 binding component 3 2 4
MIRT483098 TFPI tissue factor pathway inhibitor 2 2
MIRT485113 SHISA6 shisa family member 6 2 2
MIRT497533 ZNF607 zinc finger protein 607 2 2
MIRT500644 TUBB2A tubulin beta 2A class IIa 2 6
MIRT500890 STRN striatin 2 4
MIRT501900 MED13 mediator complex subunit 13 2 2
MIRT506646 MAPK1 mitogen-activated protein kinase 1 2 4
MIRT512675 ENO4 enolase family member 4 2 2
MIRT516977 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT528754 RPS27 ribosomal protein S27 2 6
MIRT539670 ZBTB44 zinc finger and BTB domain containing 44 2 2
MIRT544129 PPIL1 peptidylprolyl isomerase like 1 2 2
MIRT546382 STOX2 storkhead box 2 2 4
MIRT562143 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT568713 TMEM30B transmembrane protein 30B 2 2
MIRT571029 CENPP centromere protein P 2 2
MIRT572781 ZNF277 zinc finger protein 277 2 2
MIRT573162 SLC30A9 solute carrier family 30 member 9 2 2
MIRT609126 NUDT3 nudix hydrolase 3 2 2
MIRT609284 OAS3 2'-5'-oligoadenylate synthetase 3 2 2
MIRT613430 GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 2 2
MIRT613770 TTC38 tetratricopeptide repeat domain 38 2 2
MIRT616645 LRAT lecithin retinol acyltransferase 2 4
MIRT630892 SLC25A33 solute carrier family 25 member 33 2 2
MIRT636526 FAXC failed axon connections homolog 2 4
MIRT641394 NUBPL nucleotide binding protein like 2 2
MIRT641412 SCN2B sodium voltage-gated channel beta subunit 2 2 2
MIRT642528 CERS4 ceramide synthase 4 2 2
MIRT643186 HYPK huntingtin interacting protein K 2 2
MIRT647800 FRMD8 FERM domain containing 8 2 2
MIRT652150 TRIM71 tripartite motif containing 71 2 2
MIRT652602 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT661606 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT666339 SKAP2 src kinase associated phosphoprotein 2 2 2
MIRT670414 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT671122 ZNF573 zinc finger protein 573 2 2
MIRT671155 ANKRD9 ankyrin repeat domain 9 2 2
MIRT671338 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT671869 ZNF429 zinc finger protein 429 2 2
MIRT671974 IKZF3 IKAROS family zinc finger 3 2 2
MIRT672064 KIAA0930 KIAA0930 2 2
MIRT672654 SLC25A16 solute carrier family 25 member 16 2 4
MIRT672673 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT672771 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT672929 LRRC2 leucine rich repeat containing 2 2 2
MIRT673159 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT673272 RUNDC1 RUN domain containing 1 2 2
MIRT673332 THAP1 THAP domain containing 1 2 2
MIRT673351 SLC35F6 solute carrier family 35 member F6 2 2
MIRT673667 ZNF440 zinc finger protein 440 2 2
MIRT673904 DCTN6 dynactin subunit 6 2 2
MIRT674096 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674401 MYCBP MYC binding protein 2 2
MIRT674525 PRR23A proline rich 23A 2 2
MIRT674793 NPR1 natriuretic peptide receptor 1 2 2
MIRT674833 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 2
MIRT675066 FGD6 FYVE, RhoGEF and PH domain containing 6 2 2
MIRT675080 CCR6 C-C motif chemokine receptor 6 2 2
MIRT675126 FSD2 fibronectin type III and SPRY domain containing 2 2 2
MIRT679401 IL10RB interleukin 10 receptor subunit beta 2 2
MIRT689229 RPS19 ribosomal protein S19 2 2
MIRT694008 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT699671 SFT2D2 SFT2 domain containing 2 2 2
MIRT706213 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT706548 GJD2 gap junction protein delta 2 2 2
MIRT707418 RRP7A ribosomal RNA processing 7 homolog A 2 2
MIRT710648 GLUL glutamate-ammonia ligase 2 2
MIRT719393 NPCA1 Nasopharyngeal carcinoma 1 2 2
MIRT720166 PNPO pyridoxamine 5'-phosphate oxidase 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4708-5p Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-4708-5p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-4708-5p Tripterygium wilfordii Hook F sensitive tissue
hsa-miR-4708-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-4708-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4708-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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