pre-miRNA Information
pre-miRNA hsa-mir-4477a   
Genomic Coordinates chr9: 41233755 - 41233835
Description Homo sapiens miR-4477a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4477a
Sequence 48| CUAUUAAGGACAUUUGUGAUUC |69
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1281813060 1 dbSNP
rs1352899679 1 dbSNP
rs1283566158 2 dbSNP
rs1236244724 4 dbSNP
rs75019967 4 dbSNP
rs1348124293 5 dbSNP
rs34026740 8 dbSNP
rs1288237115 9 dbSNP
rs71262206 10 dbSNP
rs1355759977 11 dbSNP
rs1300249508 16 dbSNP
rs1328879592 18 dbSNP
rs139133717 20 dbSNP
Putative Targets

Gene Information
Gene Symbol GPBP1   
Synonyms GPBP, SSH6, VASCULIN
Description GC-rich promoter binding protein 1
Transcript NM_001127235   
Other Transcripts NM_001127236 , NM_022913   
Expression
Putative miRNA Targets on GPBP1
3'UTR of GPBP1
(miRNA target sites are highlighted)
>GPBP1|NM_001127235|3'UTR
   1 AGGATTTCCTAACAGCTTTAGAAATCTTAGTGTGATACATCTCTCATACAGTTTGGGGTGAATTGTAAAAATGAAGAACT
  81 ATAATTTATGTAGTGAAATACCCCATTAGAAGAGGATTTTTTGGGGGACTTCAATATGAAGAAAACCAAGAATGTTTTGT
 161 TGGGCTGTGTTGAACATTATTTCTTTGTAAATGAATGTTGTAGGAATGAGGACTTGGGTTGGTCCAACATTGACTTTCTT
 241 CATCACTGCAACATTTCTCTGACTAGCAATGTGACGATGTAACAAATGAGATTTTCTCATTTAATAATAAAAAATTGTGT
 321 AATGTTTTGCAAAGCTTCTGTCTTAAAATGTCCAGGTCTTAAGAAAAAAGGCAGCTTACACTGTTTTGCTTGCAGAGTCA
 401 TATCTTTTTCGTACAATGGAAATCCTCAAGTCCACTTTGTGCGGTCTCCCTCTCCTTCCCCCAAAAAACAACAACAACAA
 481 AACAAAAACCAAAAAGGAAAATGTAGCATGTTGGCTAAAACTGGAGCAAAGTGCACTAAAACAATTTCCTGAACTCACCT
 561 GTTGTACTATTCACCTTTTAAACCATAAATTGCTCTTTAGCCATTTGTAGTGCAGTAAATGTTACAGGAAAAGACTTGGC
 641 ACATTTTCTTCCAAATTTTAAGAGGTGATTTTCAAAAGCTTTATTGGGGTATGTTGTCAGACCAGGGTTTTCAGAGTTGA
 721 TGGAAAAGAGTCTTGTGAGAAAACTTATTTTGATAAATTATTACACACGCAGAAAAACTGATCACACTGACTGGATCTGT
 801 CCACGACATGGAAAATAAACTGGATTTTCAGAATATTGTTGTTTTCTGTAGTGTTCAAGGTATTGTTTCTAAACATAAAC
 881 ATACTCTAAACATGCTTTATTCACTTGTTAAAGTCATACTTTTAAAAGTAATACCTTACTAAAGATGGTGATTACTTTTC
 961 CGAGGTCAGAAAAGGAAAGCTAAGCGTTTTCATTATCAAATACACAAGCTTATTAAATGAATGACTGTTAACTACTTTAT
1041 TTTCATTTGCACATTAATTTTGGAATTGTTTCTGTTTTGCTGCTGACGGAAATACTATTTTGGCTCTGTGTATATTTGTA
1121 TTTTGATTTTTCTGGTTTGTTTACCCCCATTTGCTTTTAGCTCCCCCTTATGTTTAAATATATTCTAACTTATGTAAAGA
1201 GCATAATCTTAGAGCAAAAATACTTGAGGTTTTATGTCAGATCTAATCTTAAGTGTTTGTTGTTTTTTAAAAAGTGTTTT
1281 CTCAGATGGCTGCAGTGTTTTTGCTATTTCTGCATAAATACCCTACCTGGACTCCCCAGTTTTCACCAGAAACTGTTATT
1361 TTTTTTTGTTGTTGTTCCCACTGAGACTGATGGTGATGGGGAAATTAAAAACAACACACTAGCACACTCCCACAAAACTT
1441 GAGGAAGAGTTAGAATGGTAATAAAATATTAAATAGACCTTATACTTAAAATAAGGTTTCACTATATAATTTGTCACAAT
1521 TCAATCTAATCAGCTAAAGTTAAATGTAGTTAGAATTAGCCACAGGAGAATGTAAAGCATGCTTTGACGAAGCTATCGGT
1601 AACACATATTGAATGTCTTTGAGACTCTTAGATTGTACTATTTGCTTAATAGATTAATGAAATTTATCAGATACAACCTG
1681 TATTTCCAAAAACAAGCTAGAAGGAACCTGAGGAATGTGGTTTACATTTGAGATCCACCTTACTGTGTTTTCTACTTTCA
1761 GAAAAGATTCTGTAGTTTTGGTTTTTGGCATCTTTCTTATACTCAGTTTTTTCTGCCTTAATTCCCATTTACCAGCAGTT
1841 AACTCATGTTTATTGTGCTTTCATGCATTGTGATATGGAATGTGTTTAGTAATTTACTCCTTATAAATATGGTAAAGTAC
1921 AGTGGTAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuUAGUGU-UUACAGGAAUUAUc 5'
            ||:::|  || | ||||||| 
Target 5' agATTGTACTATTTGCTTAATAg 3'
1630 - 1652 156.00 -9.20
2
miRNA  3' cuUAGUGUUUAC--------AG-GAAUUAUc 5'
            :| |||||||        || :|||||| 
Target 5' atGTAACAAATGAGATTTTCTCATTTAATAa 3'
277 - 307 142.00 -6.30
3
miRNA  3' cuUAGUGUUUACAGGAAUUAUc 5'
            ||   :||||| :|||:|| 
Target 5' tgATATGGAATGTGTTTAGTAa 3'
1871 - 1892 132.00 -8.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN2528751 9 COSMIC
COSN31593100 55 COSMIC
COSN26602084 94 COSMIC
COSN30154650 96 COSMIC
COSN31531277 129 COSMIC
COSN31574315 151 COSMIC
COSN26677393 188 COSMIC
COSN31484986 201 COSMIC
COSN31479415 209 COSMIC
COSN31598453 228 COSMIC
COSN20797743 315 COSMIC
COSN25146650 443 COSMIC
COSN9452449 478 COSMIC
COSN14719457 637 COSMIC
COSN2111301 939 COSMIC
COSN9954014 1366 COSMIC
COSN14736514 1460 COSMIC
COSN21443900 1660 COSMIC
COSN5077697 1768 COSMIC
COSN20886212 1775 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1484709837 4 dbSNP
rs181775847 12 dbSNP
rs1261893843 15 dbSNP
rs778333215 17 dbSNP
rs370921313 21 dbSNP
rs765230956 27 dbSNP
rs1487084631 31 dbSNP
rs1445641562 35 dbSNP
rs752524178 38 dbSNP
rs201510984 40 dbSNP
rs1011104780 43 dbSNP
rs1453382182 46 dbSNP
rs758217605 48 dbSNP
rs1387237263 50 dbSNP
rs1450466712 52 dbSNP
rs1440398166 58 dbSNP
rs1288274522 59 dbSNP
rs1230118307 73 dbSNP
rs1300323733 82 dbSNP
rs779103857 82 dbSNP
rs1022497260 87 dbSNP
rs966973374 89 dbSNP
rs769136941 96 dbSNP
rs1398431317 97 dbSNP
rs200140806 102 dbSNP
rs1431144769 105 dbSNP
rs978317117 106 dbSNP
rs1349237879 121 dbSNP
rs1162663913 123 dbSNP
rs1407009571 123 dbSNP
rs1054614765 135 dbSNP
rs1169312617 142 dbSNP
rs891508174 147 dbSNP
rs1223479718 148 dbSNP
rs1282062384 154 dbSNP
rs1264825970 158 dbSNP
rs924246372 160 dbSNP
rs185401257 165 dbSNP
rs566629741 168 dbSNP
rs1187479610 177 dbSNP
rs1488328745 178 dbSNP
rs1245335776 179 dbSNP
rs1224518529 189 dbSNP
rs965087134 198 dbSNP
rs976883967 216 dbSNP
rs201008237 222 dbSNP
rs534819333 228 dbSNP
rs1257560804 230 dbSNP
rs1216825074 242 dbSNP
rs1320740536 248 dbSNP
rs1296492191 250 dbSNP
rs569235196 253 dbSNP
rs1278809326 254 dbSNP
rs1436880715 257 dbSNP
rs921047050 260 dbSNP
rs1438581787 271 dbSNP
rs1234462645 273 dbSNP
rs1029323002 276 dbSNP
rs932462516 277 dbSNP
rs1048290496 278 dbSNP
rs1425349625 287 dbSNP
rs1170783633 292 dbSNP
rs1432233763 304 dbSNP
rs909796657 314 dbSNP
rs1193265634 316 dbSNP
rs939878368 317 dbSNP
rs1469324094 319 dbSNP
rs1427150143 322 dbSNP
rs1036955818 323 dbSNP
rs906496634 331 dbSNP
rs1003572036 335 dbSNP
rs1251960963 337 dbSNP
rs1018120375 339 dbSNP
rs747347861 349 dbSNP
rs1310638439 351 dbSNP
rs895267876 355 dbSNP
rs17735275 371 dbSNP
rs1022381435 372 dbSNP
rs1028163702 374 dbSNP
rs1308376038 381 dbSNP
rs1444465111 383 dbSNP
rs1355526468 384 dbSNP
rs1404740287 387 dbSNP
rs966858882 394 dbSNP
rs999703366 401 dbSNP
rs1301796754 409 dbSNP
rs777015898 412 dbSNP
rs1454927986 414 dbSNP
rs759744797 416 dbSNP
rs965398016 417 dbSNP
rs189715376 422 dbSNP
rs1177387667 425 dbSNP
rs1406190004 427 dbSNP
rs1251395207 428 dbSNP
rs769768258 430 dbSNP
rs1338340941 436 dbSNP
rs1482415650 439 dbSNP
rs757127820 443 dbSNP
rs1028481417 444 dbSNP
rs1342557058 445 dbSNP
rs535449919 450 dbSNP
rs1266615095 452 dbSNP
rs557266946 456 dbSNP
rs1307114971 463 dbSNP
rs936174327 464 dbSNP
rs762854268 466 dbSNP
rs1054662584 467 dbSNP
rs891955875 467 dbSNP
rs909680559 468 dbSNP
rs1474535344 469 dbSNP
rs1360334659 479 dbSNP
rs781257631 479 dbSNP
rs1050789223 486 dbSNP
rs890805653 491 dbSNP
rs1364836149 497 dbSNP
rs1186931964 503 dbSNP
rs575828324 512 dbSNP
rs1258338628 530 dbSNP
rs182799152 539 dbSNP
rs939845838 541 dbSNP
rs1189006370 545 dbSNP
rs1424349827 548 dbSNP
rs558085363 551 dbSNP
rs1262269484 553 dbSNP
rs1006489002 554 dbSNP
rs927934605 555 dbSNP
rs573344714 560 dbSNP
rs1261171053 562 dbSNP
rs1243450995 566 dbSNP
rs1425924716 567 dbSNP
rs1294560536 570 dbSNP
rs1415068464 573 dbSNP
rs1339389728 577 dbSNP
rs1055172660 588 dbSNP
rs895141220 595 dbSNP
rs1384207546 597 dbSNP
rs1323611893 599 dbSNP
rs946769936 602 dbSNP
rs1325398537 607 dbSNP
rs1428069410 613 dbSNP
rs995824455 615 dbSNP
rs1420169041 616 dbSNP
rs1043803450 623 dbSNP
rs1477632577 636 dbSNP
rs763993675 637 dbSNP
rs951274034 638 dbSNP
rs999672047 643 dbSNP
rs1262153686 652 dbSNP
rs7168 660 dbSNP
rs971389652 662 dbSNP
rs1233318405 668 dbSNP
rs561762172 675 dbSNP
rs902125584 678 dbSNP
rs927277207 680 dbSNP
rs780649658 684 dbSNP
rs573719486 686 dbSNP
rs1229137537 692 dbSNP
rs1289411974 695 dbSNP
rs998255917 695 dbSNP
rs544210134 699 dbSNP
rs1385644721 701 dbSNP
rs1397268857 703 dbSNP
rs1326702735 706 dbSNP
rs562826201 715 dbSNP
rs1283501288 716 dbSNP
rs913429589 717 dbSNP
rs1169928240 718 dbSNP
rs1475846393 725 dbSNP
rs1373480898 732 dbSNP
rs533095229 748 dbSNP
rs946190521 749 dbSNP
rs983841266 751 dbSNP
rs1254737833 762 dbSNP
rs1255598716 763 dbSNP
rs1456972002 763 dbSNP
rs374105381 763 dbSNP
rs151213345 764 dbSNP
rs1444305756 765 dbSNP
rs769675121 769 dbSNP
rs575024962 770 dbSNP
rs972597953 772 dbSNP
rs35950077 773 dbSNP
rs927870338 775 dbSNP
rs1231477760 783 dbSNP
rs1039379968 786 dbSNP
rs1473400398 787 dbSNP
rs546731760 791 dbSNP
rs898154946 798 dbSNP
rs939245926 804 dbSNP
rs991153422 805 dbSNP
rs185615990 806 dbSNP
rs1383440706 810 dbSNP
rs535486090 817 dbSNP
rs1171785373 822 dbSNP
rs1432566706 832 dbSNP
rs1047390667 833 dbSNP
rs886963068 834 dbSNP
rs779055282 836 dbSNP
rs1043772794 837 dbSNP
rs1183288037 839 dbSNP
rs550583495 840 dbSNP
rs1451507385 845 dbSNP
rs1024402287 847 dbSNP
rs1277396217 853 dbSNP
rs1312613227 857 dbSNP
rs1384658633 861 dbSNP
rs1350575422 863 dbSNP
rs1281490988 868 dbSNP
rs1240123352 870 dbSNP
rs902634662 871 dbSNP
rs1281379526 882 dbSNP
rs935493933 885 dbSNP
rs1040585887 887 dbSNP
rs1278817837 892 dbSNP
rs1416846367 896 dbSNP
rs902011330 899 dbSNP
rs1377082009 901 dbSNP
rs996408170 903 dbSNP
rs1174011103 909 dbSNP
rs1419050205 910 dbSNP
rs1001617119 911 dbSNP
rs1348476470 918 dbSNP
rs1029670084 919 dbSNP
rs1236373293 920 dbSNP
rs1268924485 922 dbSNP
rs1461015059 928 dbSNP
rs1258682230 936 dbSNP
rs1202064561 940 dbSNP
rs1216294362 943 dbSNP
rs77827085 947 dbSNP
rs1005252894 956 dbSNP
rs1355809596 962 dbSNP
rs755790209 963 dbSNP
rs140115283 973 dbSNP
rs986897390 977 dbSNP
rs1313296863 980 dbSNP
rs765865385 986 dbSNP
rs1343380052 987 dbSNP
rs1320276294 993 dbSNP
rs1401215941 1004 dbSNP
rs1412498824 1004 dbSNP
rs994327976 1005 dbSNP
rs1162110051 1008 dbSNP
rs1160699770 1009 dbSNP
rs1338062708 1010 dbSNP
rs1193409474 1018 dbSNP
rs912723411 1022 dbSNP
rs942494100 1022 dbSNP
rs1034826848 1025 dbSNP
rs1412125316 1026 dbSNP
rs1217180356 1030 dbSNP
rs960836041 1045 dbSNP
rs1271374899 1053 dbSNP
rs1235173754 1054 dbSNP
rs753369066 1056 dbSNP
rs1277744201 1065 dbSNP
rs1217019818 1071 dbSNP
rs150285037 1072 dbSNP
rs1431455797 1073 dbSNP
rs930948940 1075 dbSNP
rs1462506409 1083 dbSNP
rs1046976081 1088 dbSNP
rs1422151867 1089 dbSNP
rs1426330322 1089 dbSNP
rs1187424951 1095 dbSNP
rs542036457 1098 dbSNP
rs1013500045 1115 dbSNP
rs1215653554 1124 dbSNP
rs979435469 1126 dbSNP
rs1469010323 1136 dbSNP
rs1328002391 1140 dbSNP
rs1333904206 1145 dbSNP
rs1257501068 1149 dbSNP
rs747470289 1151 dbSNP
rs137987347 1160 dbSNP
rs1040865428 1162 dbSNP
rs923433100 1170 dbSNP
rs1297494893 1177 dbSNP
rs932158203 1182 dbSNP
rs1050679005 1183 dbSNP
rs1265165679 1186 dbSNP
rs888064794 1194 dbSNP
rs1001648324 1196 dbSNP
rs1443001486 1196 dbSNP
rs1330062270 1198 dbSNP
rs73757334 1218 dbSNP
rs1171570920 1230 dbSNP
rs772076344 1239 dbSNP
rs1038005014 1244 dbSNP
rs1196129392 1249 dbSNP
rs1248906879 1253 dbSNP
rs1440037068 1260 dbSNP
rs557764284 1263 dbSNP
rs1175508074 1274 dbSNP
rs6878147 1274 dbSNP
rs1481743989 1277 dbSNP
rs183617481 1288 dbSNP
rs1209663849 1299 dbSNP
rs1020544419 1302 dbSNP
rs1277882585 1307 dbSNP
rs1236462081 1317 dbSNP
rs1348437061 1318 dbSNP
rs562357140 1322 dbSNP
rs1466294118 1323 dbSNP
rs960553682 1325 dbSNP
rs1375096614 1326 dbSNP
rs1167075490 1327 dbSNP
rs1446831429 1329 dbSNP
rs1374069304 1331 dbSNP
rs1175896976 1332 dbSNP
rs1435911018 1332 dbSNP
rs1394134164 1336 dbSNP
rs1421017847 1339 dbSNP
rs1012524386 1345 dbSNP
rs1181536063 1348 dbSNP
rs1484798573 1352 dbSNP
rs1023498616 1353 dbSNP
rs1254630350 1354 dbSNP
rs557887479 1354 dbSNP
rs1348514512 1355 dbSNP
rs1236782223 1359 dbSNP
rs964170802 1359 dbSNP
rs975205714 1359 dbSNP
rs919628981 1360 dbSNP
rs931000262 1362 dbSNP
rs149481496 1366 dbSNP
rs908203843 1366 dbSNP
rs546159833 1368 dbSNP
rs979320985 1369 dbSNP
rs545025153 1372 dbSNP
rs1227026773 1375 dbSNP
rs1249856370 1380 dbSNP
rs1455777575 1382 dbSNP
rs1364505668 1392 dbSNP
rs188206602 1393 dbSNP
rs956932127 1398 dbSNP
rs1046332650 1400 dbSNP
rs905039874 1401 dbSNP
rs1485912072 1407 dbSNP
rs781635009 1407 dbSNP
rs923372380 1410 dbSNP
rs1203359881 1412 dbSNP
rs1486794654 1415 dbSNP
rs1490019949 1416 dbSNP
rs746141728 1417 dbSNP
rs1332234526 1419 dbSNP
rs1051072544 1420 dbSNP
rs1294807182 1420 dbSNP
rs1055886984 1425 dbSNP
rs893177864 1429 dbSNP
rs909384739 1432 dbSNP
rs1402821950 1439 dbSNP
rs1204885647 1441 dbSNP
rs1325303693 1441 dbSNP
rs942227716 1444 dbSNP
rs1166015139 1451 dbSNP
rs1268894351 1452 dbSNP
rs146862953 1459 dbSNP
rs71624159 1460 dbSNP
rs1190699457 1461 dbSNP
rs1430270898 1462 dbSNP
rs1019799218 1468 dbSNP
rs1212973416 1474 dbSNP
rs1466802115 1475 dbSNP
rs964180906 1477 dbSNP
rs73757335 1478 dbSNP
rs529363550 1479 dbSNP
rs551013729 1483 dbSNP
rs1056204500 1486 dbSNP
rs1027144422 1488 dbSNP
rs1250003583 1488 dbSNP
rs1431335198 1488 dbSNP
rs1169045623 1491 dbSNP
rs1364880126 1495 dbSNP
rs1422709295 1502 dbSNP
rs896258764 1504 dbSNP
rs952607329 1506 dbSNP
rs1368335476 1514 dbSNP
rs1381752532 1517 dbSNP
rs569160941 1521 dbSNP
rs533357895 1525 dbSNP
rs1023385546 1527 dbSNP
rs1229583270 1532 dbSNP
rs1390554580 1547 dbSNP
rs1192973189 1554 dbSNP
rs139220054 1561 dbSNP
rs1254355163 1562 dbSNP
rs1193667585 1569 dbSNP
rs1436864192 1573 dbSNP
rs908236698 1578 dbSNP
rs949004721 1583 dbSNP
rs982043801 1589 dbSNP
rs1280026889 1590 dbSNP
rs1232809871 1596 dbSNP
rs1000707666 1598 dbSNP
rs1030892396 1599 dbSNP
rs1266573069 1600 dbSNP
rs749354873 1604 dbSNP
rs1334217916 1606 dbSNP
rs771341472 1606 dbSNP
rs1392147374 1607 dbSNP
rs976516273 1608 dbSNP
rs768678846 1610 dbSNP
rs1259163950 1619 dbSNP
rs953549881 1625 dbSNP
rs1054063013 1628 dbSNP
rs893639668 1632 dbSNP
rs1188928932 1633 dbSNP
rs1384430472 1635 dbSNP
rs1442562223 1638 dbSNP
rs1183592223 1641 dbSNP
rs1483168414 1649 dbSNP
rs1257286460 1654 dbSNP
rs947483758 1656 dbSNP
rs574337820 1663 dbSNP
rs567155216 1666 dbSNP
rs1041773604 1667 dbSNP
rs777235208 1669 dbSNP
rs909353484 1671 dbSNP
rs903197531 1673 dbSNP
rs1350402806 1674 dbSNP
rs1453071516 1675 dbSNP
rs1287247087 1677 dbSNP
rs1391106044 1678 dbSNP
rs1008162427 1681 dbSNP
rs1019838450 1683 dbSNP
rs1412634168 1685 dbSNP
rs1377032041 1689 dbSNP
rs900114220 1694 dbSNP
rs1405230338 1699 dbSNP
rs193254649 1708 dbSNP
rs1472732557 1710 dbSNP
rs972290955 1711 dbSNP
rs997091657 1714 dbSNP
rs556016566 1717 dbSNP
rs1380976763 1719 dbSNP
rs774477891 1721 dbSNP
rs1313983738 1724 dbSNP
rs1316860089 1725 dbSNP
rs1237693832 1729 dbSNP
rs1286469269 1731 dbSNP
rs1027606861 1732 dbSNP
rs1334454769 1735 dbSNP
rs567823114 1735 dbSNP
rs952903271 1740 dbSNP
rs919538849 1745 dbSNP
rs1265736216 1748 dbSNP
rs1465955307 1755 dbSNP
rs1429965225 1757 dbSNP
rs982947324 1768 dbSNP
rs1015313134 1772 dbSNP
rs537945470 1776 dbSNP
rs1056571740 1781 dbSNP
rs1188143323 1787 dbSNP
rs1393081839 1791 dbSNP
rs1162395884 1796 dbSNP
rs1462669638 1799 dbSNP
rs556224232 1801 dbSNP
rs1186249202 1803 dbSNP
rs1474715654 1806 dbSNP
rs981744410 1807 dbSNP
rs926262740 1810 dbSNP
rs774290411 1815 dbSNP
rs896155368 1822 dbSNP
rs1183391486 1828 dbSNP
rs577608350 1832 dbSNP
rs937948245 1834 dbSNP
rs1044805392 1835 dbSNP
rs1322505492 1840 dbSNP
rs1290368328 1844 dbSNP
rs183132375 1847 dbSNP
rs1359801964 1848 dbSNP
rs1271921395 1850 dbSNP
rs1435723247 1859 dbSNP
rs1418502810 1863 dbSNP
rs1323246726 1866 dbSNP
rs1462716890 1868 dbSNP
rs1350036509 1873 dbSNP
rs1170206128 1877 dbSNP
rs541654702 1878 dbSNP
rs1030861227 1883 dbSNP
rs1041804534 1891 dbSNP
rs924671537 1897 dbSNP
rs373353082 1901 dbSNP
rs1336280290 1906 dbSNP
rs1041049187 1908 dbSNP
rs143349713 1914 dbSNP
rs1232462345 1922 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000424459.3 | 3UTR | AUGAGAUUUUCUCAUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-4477a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055843 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT061259 AMOTL1 angiomotin like 1 2 4
MIRT071895 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT076933 MLLT6 MLLT6, PHD finger containing 2 2
MIRT078652 ICT1 mitochondrial ribosomal protein L58 2 2
MIRT083633 PRNP prion protein 2 2
MIRT091629 RPL15 ribosomal protein L15 2 4
MIRT107076 PPP6C protein phosphatase 6 catalytic subunit 2 2
MIRT111191 TRIM33 tripartite motif containing 33 2 2
MIRT114515 ARF6 ADP ribosylation factor 6 2 2
MIRT175250 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT175430 ACSL4 acyl-CoA synthetase long chain family member 4 2 2
MIRT178687 FAM102B family with sequence similarity 102 member B 2 2
MIRT189771 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT229450 RPL10 ribosomal protein L10 2 2
MIRT244899 PHF6 PHD finger protein 6 2 2
MIRT249189 AKIRIN1 akirin 1 2 8
MIRT261134 TRIM8 tripartite motif containing 8 2 2
MIRT275561 ZIC5 Zic family member 5 2 4
MIRT275652 ABHD13 abhydrolase domain containing 13 2 2
MIRT288082 UTP18 UTP18, small subunit processome component 2 2
MIRT303605 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT307924 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT316787 FOXC1 forkhead box C1 2 2
MIRT326910 SCML2 Scm polycomb group protein like 2 2 2
MIRT327713 SPIN4 spindlin family member 4 2 2
MIRT331632 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT342506 TMOD3 tropomodulin 3 2 4
MIRT354470 LRRC58 leucine rich repeat containing 58 2 2
MIRT378711 TRIM24 tripartite motif containing 24 2 2
MIRT407462 YDJC YdjC chitooligosaccharide deacetylase homolog 2 2
MIRT408226 SMAD5 SMAD family member 5 2 4
MIRT441824 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT442783 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT443184 NHS NHS actin remodeling regulator 2 4
MIRT447615 CUL3 cullin 3 2 2
MIRT450156 DSEL dermatan sulfate epimerase-like 2 2
MIRT454801 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT463050 ZNF644 zinc finger protein 644 2 2
MIRT467400 SOCS3 suppressor of cytokine signaling 3 2 2
MIRT468174 SGMS1 sphingomyelin synthase 1 2 2
MIRT468949 RPS14 ribosomal protein S14 2 6
MIRT469835 R3HDM4 R3H domain containing 4 2 2
MIRT470724 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT470902 PLIN3 perilipin 3 2 2
MIRT472467 NAPG NSF attachment protein gamma 2 12
MIRT472602 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT492350 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493840 FOXN3 forkhead box N3 2 4
MIRT496318 DOCK9 dedicator of cytokinesis 9 2 2
MIRT500159 CLEC2D C-type lectin domain family 2 member D 2 8
MIRT500535 XPO4 exportin 4 2 4
MIRT503916 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504003 SAT1 spermidine/spermine N1-acetyltransferase 1 2 4
MIRT505647 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT506574 MIER3 MIER family member 3 2 4
MIRT506945 HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 2 4
MIRT508196 RPS19 ribosomal protein S19 2 6
MIRT511417 HSPA13 heat shock protein family A (Hsp70) member 13 2 4
MIRT512326 ACTB actin beta 2 4
MIRT515376 RPL7 ribosomal protein L7 2 2
MIRT520422 TUBG1 tubulin gamma 1 2 4
MIRT524844 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT526320 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526561 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT528027 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT529874 RBM43 RNA binding motif protein 43 2 2
MIRT530826 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT531334 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT532068 CCNB1 cyclin B1 2 4
MIRT532870 ZNF566 zinc finger protein 566 2 2
MIRT535580 NUP35 nucleoporin 35 2 2
MIRT537644 ERGIC2 ERGIC and golgi 2 2 4
MIRT537725 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT538894 BRI3BP BRI3 binding protein 2 2
MIRT538945 BMP2K BMP2 inducible kinase 2 2
MIRT540703 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT543210 TMEM117 transmembrane protein 117 2 3
MIRT543357 LYRM2 LYR motif containing 2 2 2
MIRT544905 CLSPN claspin 2 2
MIRT545532 ARF3 ADP ribosylation factor 3 2 2
MIRT546446 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT546882 PURB purine rich element binding protein B 2 4
MIRT547440 MED13 mediator complex subunit 13 2 2
MIRT548027 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548673 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT550435 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT551850 RPS3 ribosomal protein S3 2 2
MIRT556072 MRFAP1 Morf4 family associated protein 1 2 2
MIRT556554 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT557132 HOXA13 homeobox A13 2 2
MIRT557875 FEM1B fem-1 homolog B 2 4
MIRT558146 ELK4 ELK4, ETS transcription factor 2 2
MIRT558862 CD2AP CD2 associated protein 2 2
MIRT558884 CCNE1 cyclin E1 2 4
MIRT558907 CBX5 chromobox 5 2 2
MIRT559175 BRAP BRCA1 associated protein 2 2
MIRT560860 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561729 PPIF peptidylprolyl isomerase F 2 2
MIRT564024 CEBPB CCAAT/enhancer binding protein beta 2 2
MIRT564366 TRMT5 tRNA methyltransferase 5 2 2
MIRT564609 ZNF703 zinc finger protein 703 2 2
MIRT565494 AZF1 azoospermia factor 1 2 2
MIRT565577 SLC6A8 solute carrier family 6 member 8 2 2
MIRT566947 LEPROT leptin receptor overlapping transcript 2 2
MIRT567293 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT567308 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT568048 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT571807 PHF19 PHD finger protein 19 2 2
MIRT609234 RBM23 RNA binding motif protein 23 2 2
MIRT610328 SSX5 SSX family member 5 2 2
MIRT611428 UGT8 UDP glycosyltransferase 8 2 4
MIRT611709 SLFN13 schlafen family member 13 2 2
MIRT612069 CEP135 centrosomal protein 135 2 4
MIRT617676 JRKL JRK like 2 2
MIRT623684 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT635634 PRR15L proline rich 15 like 2 2
MIRT636422 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT637011 GPATCH11 G-patch domain containing 11 2 2
MIRT644150 C4orf3 chromosome 4 open reading frame 3 2 2
MIRT648562 MEMO1 mediator of cell motility 1 2 2
MIRT650752 WNT16 Wnt family member 16 2 2
MIRT651914 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT653556 SLC38A7 solute carrier family 38 member 7 2 2
MIRT692277 XRN2 5'-3' exoribonuclease 2 2 2
MIRT697650 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT703876 ERCC6 ERCC excision repair 6, chromatin remodeling factor 2 2
MIRT704615 CLIP1 CAP-Gly domain containing linker protein 1 2 2
MIRT708562 BBOX1 gamma-butyrobetaine hydroxylase 1 2 2
MIRT709614 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT712955 SGCD sarcoglycan delta 2 2
MIRT713502 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT720239 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT724255 GLUD1 glutamate dehydrogenase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4477a Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4477a Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4477a Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)

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