pre-miRNA Information
pre-miRNA hsa-mir-2355   
Genomic Coordinates chr2: 207109987 - 207110073
Description Homo sapiens miR-2355 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-2355-5p
Sequence 11| AUCCCCAGAUACAAUGGACAA |31
Evidence Experimental
Experiments SOLiD
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 2 - 207110063 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1268296297 4 dbSNP
rs1361046879 5 dbSNP
rs1219551997 6 dbSNP
rs1295756820 12 dbSNP
rs1345273529 15 dbSNP
rs977145706 15 dbSNP
rs1209629984 20 dbSNP
rs759940260 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PTGR2   
Synonyms HEL-S-298, PGR2, ZADH1
Description prostaglandin reductase 2
Transcript NM_001146154   
Other Transcripts NM_001146155 , NM_152444   
Expression
Putative miRNA Targets on PTGR2
3'UTR of PTGR2
(miRNA target sites are highlighted)
>PTGR2|NM_001146154|3'UTR
   1 TTGCTGTAAATGTCATCAAGGCAATCATAGATTTCTTTTCCATTTTGCATATTTTCAAAGATATGTTAAAAAATCCTTAG
  81 ACTATACATAGCTCTTGATTTAAATGTGATCATAGGTGTTATTTTTAGTTGCATAGGGTATTTGATACAATCATTAATGG
 161 ATCATACACAATAGGTTTTTAAAAATTAATAACTTTTAGTAATTACTTTTATTAATTTAAAATAGAACGCTTGAGAGGCA
 241 CTTTGTAAAGATTTGTTAAACTGGAAACGTTTTACATGATCTGATACAACCATTAATGAATCATACACAATAGGTTTTTT
 321 AAAATTAATATTAATAACTTTTATTAATTTAAAATAGAATGCTTAAAATAAAATAGAATGCTTGAGAGGCACTGAGTAAA
 401 GATTTGTTGAACTGGAAATGTTTTACATGATTCTTAAACTGAAACTTGGTGTAAAAATAGAATTGAGATGGCCTTTTTTT
 481 CACATTGTAGACTGAAAAGAGACTTAATGGTATGATGTGTACATAGGGACTGGGGGCAGGATTGGGGGTTTCGGAGCTTG
 561 TGTAACAGTTTTTGGGATAGGAGACCAGCGGTTTTGGGTTGGGATTAGTATGGGAAGATAAATAACTTAGGTTGGTTAAG
 641 TTGACAAGATTTACTCCAGAGGATCATCTCTTTGTATTTGCCAAATAATTTACTGTATAGCCTAAAAACTCCATATATAT
 721 TGAGAAAAGCATATGTTTATTTTAGGTTAGCAGGCACATACTGTCAAGTTGTAAAGATTGAGAGGGCAAACAGATGTAAA
 801 CATCACTTGTAGGTGATTAAAAAGATTGACAGCCGGGCCTGATGTCTCAAGCCTGTAATCCTAGCACTTTGGGAGGCAGA
 881 GGCGGGCAGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACACGGTGAAACCCCATCTCTCTAAAAATACAAA
 961 AATTAGCTGGGCGTGGTGGCACACGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCTGGAGAATCATTTGAACCTGGGA
1041 GGGGGAGGTTGCCGTGAGCTGAGCTTGCACCATTGCACTCCAGCCTGGGCGACAAGAGTGAAATTCCATCTCAAAAAACA
1121 AAAACAGATTGACAACAAAGACAGTTTCAGAAAATGACAGGACTGGGCAAATTAACAAATGTTTGTAAACATGAATGTTC
1201 AGGAACTACTGATGTACCTCAAAAGTTTGTTTTATTAATTGTACTCAACCCTCGCAGAACAGTAAAACTGAAGATTATTG
1281 TTTCTGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aaCAGGUAACAUAGACCCCUa 5'
            || ||| | : ||||||: 
Target 5' gtGTACATAGGGACTGGGGGc 3'
517 - 537 143.00 -15.70
2
miRNA  3' aacaGGUAACAU-A-----GACCC-CUa 5'
              |||||| | |     ||||| || 
Target 5' tgcaCCATTGCACTCCAGCCTGGGCGAc 3'
1066 - 1093 121.00 -15.10
3
miRNA  3' aacAGGUAACAUAGACCCcua 5'
             ||  ||| | |||||   
Target 5' gaaTCATTTGAACCTGGGagg 3'
1022 - 1042 118.00 -11.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31491815 6 COSMIC
COSN31587250 31 COSMIC
COSN16946563 92 COSMIC
COSN31554651 93 COSMIC
COSN14823036 149 COSMIC
COSN20758035 720 COSMIC
COSN25034179 1041 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1413396342 4 dbSNP
rs747271377 12 dbSNP
rs757800218 16 dbSNP
rs781762072 18 dbSNP
rs748876739 25 dbSNP
rs1288022502 27 dbSNP
rs186749702 29 dbSNP
rs1242814182 31 dbSNP
rs1222407795 32 dbSNP
rs1310240066 32 dbSNP
rs1344655954 34 dbSNP
rs773947699 42 dbSNP
rs1197110743 43 dbSNP
rs959063789 48 dbSNP
rs1354722450 49 dbSNP
rs747863356 50 dbSNP
rs984662476 62 dbSNP
rs1245957267 68 dbSNP
rs529213155 68 dbSNP
rs1244532323 93 dbSNP
rs111529914 110 dbSNP
rs776247577 112 dbSNP
rs962164888 119 dbSNP
rs1409351704 127 dbSNP
rs1351120439 133 dbSNP
rs1331137870 136 dbSNP
rs1385268891 139 dbSNP
rs1360786888 143 dbSNP
rs1212063809 150 dbSNP
rs1248827772 153 dbSNP
rs1437500610 154 dbSNP
rs976046260 156 dbSNP
rs546051754 162 dbSNP
rs559515254 163 dbSNP
rs1234768956 168 dbSNP
rs1449563271 170 dbSNP
rs967842489 179 dbSNP
rs761384578 187 dbSNP
rs1470097116 190 dbSNP
rs924780909 193 dbSNP
rs947524540 199 dbSNP
rs769564537 202 dbSNP
rs556003258 203 dbSNP
rs564770996 207 dbSNP
rs1426450948 211 dbSNP
rs902234069 211 dbSNP
rs1231134183 222 dbSNP
rs1330787866 224 dbSNP
rs1324434983 226 dbSNP
rs1441379278 227 dbSNP
rs1396317090 229 dbSNP
rs15799 230 dbSNP
rs1408593801 231 dbSNP
rs987762862 232 dbSNP
rs1159836518 234 dbSNP
rs912140991 237 dbSNP
rs551551368 242 dbSNP
rs1376773950 251 dbSNP
rs896146520 269 dbSNP
rs571792229 270 dbSNP
rs1246534212 274 dbSNP
rs1044941065 277 dbSNP
rs1465788473 279 dbSNP
rs1286923389 283 dbSNP
rs1198855099 293 dbSNP
rs879832289 293 dbSNP
rs1451368628 294 dbSNP
rs1236718973 315 dbSNP
rs751340281 321 dbSNP
rs1384242744 324 dbSNP
rs1345784786 329 dbSNP
rs930760065 329 dbSNP
rs1320192102 330 dbSNP
rs1412275593 333 dbSNP
rs766399289 334 dbSNP
rs1173914902 335 dbSNP
rs1436145976 338 dbSNP
rs1006437821 339 dbSNP
rs765976358 343 dbSNP
rs1247581564 345 dbSNP
rs1014767853 350 dbSNP
rs1250082387 354 dbSNP
rs1244344054 357 dbSNP
rs1339164304 361 dbSNP
rs1196687402 364 dbSNP
rs1260238965 370 dbSNP
rs531080979 371 dbSNP
rs1460141418 373 dbSNP
rs997600364 379 dbSNP
rs1227466430 380 dbSNP
rs1030455611 388 dbSNP
rs551205954 390 dbSNP
rs1243790903 397 dbSNP
rs1425591963 419 dbSNP
rs191997299 428 dbSNP
rs17182656 434 dbSNP
rs758112851 436 dbSNP
rs1368375705 447 dbSNP
rs1167561622 448 dbSNP
rs939178302 451 dbSNP
rs1422038776 452 dbSNP
rs1162013804 459 dbSNP
rs1056336123 461 dbSNP
rs938885266 474 dbSNP
rs1190225828 479 dbSNP
rs1482112754 481 dbSNP
rs1251366345 491 dbSNP
rs1205415227 495 dbSNP
rs1403516883 505 dbSNP
rs1274806036 511 dbSNP
rs1226365912 520 dbSNP
rs1293814081 524 dbSNP
rs1416156849 525 dbSNP
rs72723752 530 dbSNP
rs1307054865 534 dbSNP
rs538669321 536 dbSNP
rs917687215 541 dbSNP
rs565577131 553 dbSNP
rs947699138 554 dbSNP
rs534631832 558 dbSNP
rs1021974776 563 dbSNP
rs1044748495 569 dbSNP
rs1379975798 577 dbSNP
rs1411268914 579 dbSNP
rs887656804 587 dbSNP
rs1481763884 590 dbSNP
rs529406012 594 dbSNP
rs1006139532 595 dbSNP
rs1326284271 596 dbSNP
rs8007148 609 dbSNP
rs1235013770 613 dbSNP
rs1280467928 623 dbSNP
rs897654578 633 dbSNP
rs1305724549 635 dbSNP
rs997381131 642 dbSNP
rs1375150610 643 dbSNP
rs1291425645 645 dbSNP
rs1203311064 646 dbSNP
rs1395599498 649 dbSNP
rs1328545404 652 dbSNP
rs1263937886 655 dbSNP
rs1030403020 657 dbSNP
rs11369964 667 dbSNP
rs60798963 667 dbSNP
rs577325996 673 dbSNP
rs1261040399 675 dbSNP
rs756298318 679 dbSNP
rs79238901 685 dbSNP
rs969338621 688 dbSNP
rs754127732 690 dbSNP
rs924883739 694 dbSNP
rs1260062984 697 dbSNP
rs1479962998 715 dbSNP
rs960178254 716 dbSNP
rs1019232391 717 dbSNP
rs965009189 721 dbSNP
rs975373211 723 dbSNP
rs527486673 733 dbSNP
rs992972462 734 dbSNP
rs917635048 735 dbSNP
rs947814835 747 dbSNP
rs1407771182 752 dbSNP
rs1361935631 755 dbSNP
rs1045087435 756 dbSNP
rs1450998125 758 dbSNP
rs1357438037 759 dbSNP
rs1175667467 762 dbSNP
rs920616765 763 dbSNP
rs114078920 764 dbSNP
rs941725220 768 dbSNP
rs1036269576 769 dbSNP
rs1383239782 770 dbSNP
rs573858411 779 dbSNP
rs1486574189 781 dbSNP
rs983540815 782 dbSNP
rs1209487643 783 dbSNP
rs1348210468 785 dbSNP
rs1282001405 793 dbSNP
rs1051613307 804 dbSNP
rs889173694 810 dbSNP
rs1223224026 811 dbSNP
rs758089872 815 dbSNP
rs1313392953 816 dbSNP
rs1384384280 817 dbSNP
rs1007647591 820 dbSNP
rs1284173671 820 dbSNP
rs1022169386 822 dbSNP
rs907951277 826 dbSNP
rs904507787 827 dbSNP
rs999284649 829 dbSNP
rs939209371 831 dbSNP
rs1237051340 834 dbSNP
rs542589286 835 dbSNP
rs1430278205 836 dbSNP
rs1486175315 839 dbSNP
rs1031897234 850 dbSNP
rs1186672658 854 dbSNP
rs1485708630 864 dbSNP
rs1259182134 877 dbSNP
rs894941496 879 dbSNP
rs1202511837 880 dbSNP
rs948004688 884 dbSNP
rs1043996625 885 dbSNP
rs113634161 886 dbSNP
rs1320504258 897 dbSNP
rs1490128825 899 dbSNP
rs992921744 900 dbSNP
rs1233987233 903 dbSNP
rs1023092160 904 dbSNP
rs113327319 912 dbSNP
rs1390999930 921 dbSNP
rs1397443684 936 dbSNP
rs980538227 941 dbSNP
rs1415667257 943 dbSNP
rs533693217 943 dbSNP
rs1164045788 947 dbSNP
rs143382580 950 dbSNP
rs1179353649 972 dbSNP
rs187080572 973 dbSNP
rs1157786334 974 dbSNP
rs1363911735 980 dbSNP
rs1019127401 983 dbSNP
rs1337083076 985 dbSNP
rs1420934465 986 dbSNP
rs919147784 987 dbSNP
rs1238393718 988 dbSNP
rs965209454 1007 dbSNP
rs1336634733 1011 dbSNP
rs747795318 1021 dbSNP
rs1392920663 1024 dbSNP
rs1051559847 1027 dbSNP
rs1325160319 1034 dbSNP
rs1364184106 1036 dbSNP
rs1028320984 1042 dbSNP
rs1304120316 1043 dbSNP
rs1370071439 1044 dbSNP
rs952106954 1054 dbSNP
rs1431824987 1055 dbSNP
rs551195783 1066 dbSNP
rs1470258139 1069 dbSNP
rs1266765031 1072 dbSNP
rs1043126955 1073 dbSNP
rs567793800 1081 dbSNP
rs1317613165 1084 dbSNP
rs537747000 1088 dbSNP
rs907855969 1091 dbSNP
rs939448239 1092 dbSNP
rs992169144 1093 dbSNP
rs72627116 1094 dbSNP
rs1014457296 1096 dbSNP
rs546947363 1101 dbSNP
rs567155638 1109 dbSNP
rs970238283 1113 dbSNP
rs138682977 1128 dbSNP
rs1248212209 1130 dbSNP
rs1043680693 1131 dbSNP
rs1394077495 1136 dbSNP
rs189615394 1141 dbSNP
rs935008499 1152 dbSNP
rs1441010353 1157 dbSNP
rs1240869572 1159 dbSNP
rs1193022736 1161 dbSNP
rs971724509 1162 dbSNP
rs772969104 1169 dbSNP
rs933013694 1181 dbSNP
rs1281306163 1182 dbSNP
rs1234757897 1185 dbSNP
rs1052118748 1191 dbSNP
rs1268368204 1194 dbSNP
rs890766794 1198 dbSNP
rs1326921918 1201 dbSNP
rs1319772981 1202 dbSNP
rs1412369437 1204 dbSNP
rs1007991153 1214 dbSNP
rs1436982042 1221 dbSNP
rs569940470 1221 dbSNP
rs17182670 1222 dbSNP
rs943192699 1225 dbSNP
rs1043292128 1226 dbSNP
rs1185987577 1232 dbSNP
rs900710831 1235 dbSNP
rs1297832044 1243 dbSNP
rs1258506018 1248 dbSNP
rs1213229922 1251 dbSNP
rs377648035 1254 dbSNP
rs1374238391 1267 dbSNP
rs1270671833 1268 dbSNP
rs1213750013 1271 dbSNP
rs1340054449 1274 dbSNP
rs1271851388 1277 dbSNP
rs1230926026 1287 dbSNP
rs1354206147 1293 dbSNP
rs770917145 1297 dbSNP
rs934743387 1305 dbSNP
rs1352368211 1308 dbSNP
rs1449176003 1313 dbSNP
rs536778293 1315 dbSNP
rs1053170544 1320 dbSNP
rs1422280138 1322 dbSNP
rs1382006042 1326 dbSNP
rs1027928052 1334 dbSNP
rs1163338484 1339 dbSNP
rs556721067 1345 dbSNP
rs952313791 1348 dbSNP
rs149320564 1358 dbSNP
rs564940568 1369 dbSNP
rs1305566759 1370 dbSNP
rs759562966 1373 dbSNP
rs1251599676 1383 dbSNP
rs1232504197 1384 dbSNP
rs1203640650 1388 dbSNP
rs1438120694 1392 dbSNP
rs1014238058 1393 dbSNP
rs1211685019 1393 dbSNP
rs1044611207 1395 dbSNP
rs906128358 1396 dbSNP
rs1293414222 1403 dbSNP
rs1005689870 1404 dbSNP
rs1458806982 1407 dbSNP
rs1017528633 1410 dbSNP
rs992294832 1413 dbSNP
rs1444668840 1414 dbSNP
rs1443408804 1415 dbSNP
rs916643059 1419 dbSNP
rs749829950 1424 dbSNP
rs1324509055 1425 dbSNP
rs62003709 1435 dbSNP
rs979658077 1437 dbSNP
rs573101886 1443 dbSNP
rs1401373680 1460 dbSNP
rs1407531979 1462 dbSNP
rs545410923 1463 dbSNP
rs910439896 1469 dbSNP
rs964993682 1470 dbSNP
rs978577862 1483 dbSNP
rs1468014362 1503 dbSNP
rs1448779890 1512 dbSNP
rs1273719628 1516 dbSNP
rs1285889501 1517 dbSNP
rs1314556222 1523 dbSNP
rs935249567 1525 dbSNP
rs1052320198 1529 dbSNP
rs925775876 1531 dbSNP
rs62003710 1532 dbSNP
rs1440616738 1535 dbSNP
rs1053118987 1539 dbSNP
rs1328433562 1541 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aacagguaacauagACCCCUa 5'
                        |||||| 
Target 5' --------------UGGGGAg 3'
1 - 7
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000555661.1 | 3UTR | UGGGGAGGCCCCGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
KICH -0.712 0 -0.615 0 25 Click to see details
BRCA -0.308 0 -0.355 0 84 Click to see details
UCEC -0.607 0 -0.542 0.01 19 Click to see details
KIRP -0.257 0.08 -0.327 0.03 32 Click to see details
KIRC -0.173 0.08 -0.210 0.04 68 Click to see details
PRAD -0.195 0.09 -0.223 0.06 50 Click to see details
BLCA 0.326 0.09 0.307 0.11 18 Click to see details
PAAD -0.806 0.1 -0.800 0.1 4 Click to see details
ESCA 0.408 0.11 0.327 0.16 11 Click to see details
CHOL 0.367 0.17 0.067 0.43 9 Click to see details
LIHC -0.095 0.26 -0.138 0.17 49 Click to see details
LUSC 0.101 0.27 0.148 0.19 38 Click to see details
STAD -0.108 0.28 -0.165 0.18 32 Click to see details
THCA 0.062 0.32 0.001 0.5 59 Click to see details
CESC 0.369 0.38 0.500 0.33 3 Click to see details
LUAD 0.065 0.42 -0.014 0.48 12 Click to see details
HNSC -0.006 0.48 -0.148 0.17 42 Click to see details
PCPG 0.003 0.5 -0.500 0.33 3 Click to see details
PCPG 0.003 0.5 -0.500 0.33 3 Click to see details
164 hsa-miR-2355-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT190653 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT286477 TAOK1 TAO kinase 1 2 4
MIRT318993 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT345622 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT442513 SYT7 synaptotagmin 7 2 4
MIRT444247 CTNND1 catenin delta 1 2 2
MIRT444780 ECE1 endothelin converting enzyme 1 2 2
MIRT456525 TMEM63A transmembrane protein 63A 2 2
MIRT468960 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT469834 R3HDM4 R3H domain containing 4 2 2
MIRT470027 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT471167 PHB2 prohibitin 2 2 2
MIRT475819 HDGF heparin binding growth factor 2 4
MIRT479389 CDKN1B cyclin dependent kinase inhibitor 1B 2 6
MIRT481747 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT485220 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT487259 CCNF cyclin F 2 2
MIRT489971 MCC mutated in colorectal cancers 2 4
MIRT491399 C1D C1D nuclear receptor corepressor 2 2
MIRT494959 CCDC144A coiled-coil domain containing 144A 2 4
MIRT494979 PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 2 2
MIRT495225 CHST14 carbohydrate sulfotransferase 14 2 2
MIRT496550 TBX15 T-box 15 2 2
MIRT501612 PISD phosphatidylserine decarboxylase 2 2
MIRT509393 TRIM24 tripartite motif containing 24 2 2
MIRT519616 ZNF788 zinc finger family member 788 2 4
MIRT519738 ZNF394 zinc finger protein 394 2 4
MIRT521230 SAR1A secretion associated Ras related GTPase 1A 2 4
MIRT521801 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT526233 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT526932 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT529189 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT529329 ZNF649 zinc finger protein 649 2 2
MIRT529698 MRPL30 mitochondrial ribosomal protein L30 2 2
MIRT529921 TOP1MT DNA topoisomerase I mitochondrial 2 2
MIRT530032 SMC1A structural maintenance of chromosomes 1A 2 2
MIRT530898 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT531621 TM4SF5 transmembrane 4 L six family member 5 2 4
MIRT533132 XIAP X-linked inhibitor of apoptosis 2 2
MIRT533210 WAPAL WAPL cohesin release factor 2 2
MIRT534058 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2 2
MIRT535487 PARVB parvin beta 2 2
MIRT536749 HOXD9 homeobox D9 2 2
MIRT551456 CARKD NAD(P)HX dehydratase 2 2
MIRT551858 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT552095 FAM8A1 family with sequence similarity 8 member A1 2 2
MIRT552332 ZNF704 zinc finger protein 704 2 2
MIRT552549 ZFP36L2 ZFP36 ring finger protein like 2 2 2
MIRT561505 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT562702 ZNF415 zinc finger protein 415 2 2
MIRT563052 ZNF138 zinc finger protein 138 2 2
MIRT564592 ZNF791 zinc finger protein 791 2 2
MIRT566422 PIGA phosphatidylinositol glycan anchor biosynthesis class A 2 2
MIRT570176 RCBTB1 RCC1 and BTB domain containing protein 1 2 2
MIRT570866 ZNF525 zinc finger protein 525 2 2
MIRT570875 ZFP1 ZFP1 zinc finger protein 2 2
MIRT571517 ZNF625 zinc finger protein 625 2 2
MIRT572551 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT610894 HINFP histone H4 transcription factor 2 2
MIRT611037 PTGES prostaglandin E synthase 2 2
MIRT611479 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT612419 SP1 Sp1 transcription factor 2 2
MIRT614478 FRMPD3 FERM and PDZ domain containing 3 2 2
MIRT616318 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT616929 ZNF638 zinc finger protein 638 2 2
MIRT618131 GABARAPL3 GABA type A receptor associated protein like 3 pseudogene 2 2
MIRT618452 ZFP30 ZFP30 zinc finger protein 2 4
MIRT620671 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT620713 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT621126 EMC7 ER membrane protein complex subunit 7 2 4
MIRT621443 TOMM22 translocase of outer mitochondrial membrane 22 2 2
MIRT623491 KCTD11 potassium channel tetramerization domain containing 11 2 2
MIRT623783 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT623918 FNBP1L formin binding protein 1 like 2 2
MIRT625723 CXorf38 chromosome X open reading frame 38 2 2
MIRT625778 GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 2 2
MIRT626940 TTR transthyretin 2 2
MIRT627357 TSC22D2 TSC22 domain family member 2 2 2
MIRT632078 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT633361 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT639793 MVK mevalonate kinase 2 2
MIRT643761 NAGK N-acetylglucosamine kinase 2 2
MIRT644358 NDUFAF6 NADH:ubiquinone oxidoreductase complex assembly factor 6 2 2
MIRT645558 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT646588 ANKRD36 ankyrin repeat domain 36 2 2
MIRT646631 SLC25A46 solute carrier family 25 member 46 2 2
MIRT648066 HSPA6 heat shock protein family A (Hsp70) member 6 2 2
MIRT648142 SUCLG2 succinate-CoA ligase GDP-forming beta subunit 2 2
MIRT648416 MYOZ3 myozenin 3 2 2
MIRT649218 AMMECR1L AMMECR1 like 2 2
MIRT649772 MRPS27 mitochondrial ribosomal protein S27 2 4
MIRT650510 UFM1 ubiquitin fold modifier 1 2 2
MIRT651007 ZNF740 zinc finger protein 740 2 2
MIRT651524 WNT2B Wnt family member 2B 2 2
MIRT652014 TTYH3 tweety family member 3 2 2
MIRT652513 TMEM109 transmembrane protein 109 2 2
MIRT652686 THUMPD3 THUMP domain containing 3 2 2
MIRT652772 TENM3 teneurin transmembrane protein 3 2 2
MIRT653160 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT653765 SIX5 SIX homeobox 5 2 2
MIRT653792 SIRPA signal regulatory protein alpha 2 2
MIRT655649 OAZ2 ornithine decarboxylase antizyme 2 2 2
MIRT656263 MEX3A mex-3 RNA binding family member A 2 2
MIRT657044 KCNH6 potassium voltage-gated channel subfamily H member 6 2 2
MIRT657375 HMGA1 high mobility group AT-hook 1 2 2
MIRT657532 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT657542 GSTO2 glutathione S-transferase omega 2 2 2
MIRT657828 GJD3 gap junction protein delta 3 2 2
MIRT658946 DOK6 docking protein 6 2 2
MIRT660363 BACH2 BTB domain and CNC homolog 2 2 2
MIRT660406 ATXN7L3 ataxin 7 like 3 2 2
MIRT660948 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT661031 AAK1 AP2 associated kinase 1 2 2
MIRT662435 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT668419 FAM217B family with sequence similarity 217 member B 2 2
MIRT669332 BSND barttin CLCNK type accessory beta subunit 2 2
MIRT676105 CLUAP1 clusterin associated protein 1 2 2
MIRT677084 SMIM15 small integral membrane protein 15 2 2
MIRT677127 OGFOD3 2-oxoglutarate and iron dependent oxygenase domain containing 3 2 2
MIRT678001 CPM carboxypeptidase M 2 2
MIRT678531 TMEM78 transmembrane protein 78 2 2
MIRT680000 ZNF860 zinc finger protein 860 2 2
MIRT680098 PXMP4 peroxisomal membrane protein 4 2 2
MIRT686795 SOX12 SRY-box 12 2 2
MIRT698887 SPTBN2 spectrin beta, non-erythrocytic 2 2 2
MIRT699371 SLC30A6 solute carrier family 30 member 6 2 2
MIRT702005 MIDN midnolin 2 2
MIRT708101 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 2 2
MIRT709563 GYG2 glycogenin 2 2 2
MIRT710559 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT710585 CDCA4 cell division cycle associated 4 2 2
MIRT710873 NT5DC1 5'-nucleotidase domain containing 1 2 2
MIRT711876 VASP vasodilator stimulated phosphoprotein 2 2
MIRT712226 RIMS3 regulating synaptic membrane exocytosis 3 2 2
MIRT713211 FAM13A family with sequence similarity 13 member A 2 2
MIRT713261 GPR55 G protein-coupled receptor 55 2 2
MIRT713327 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT713889 RNF19B ring finger protein 19B 2 2
MIRT714015 UBAP2L ubiquitin associated protein 2 like 2 2
MIRT714202 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT714717 VPS8 VPS8, CORVET complex subunit 2 2
MIRT714748 ZNF385D zinc finger protein 385D 2 2
MIRT714806 ARHGEF19 Rho guanine nucleotide exchange factor 19 2 2
MIRT714852 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715717 MRPL4 mitochondrial ribosomal protein L4 2 2
MIRT715852 GRIN2A glutamate ionotropic receptor NMDA type subunit 2A 2 2
MIRT716853 MFSD12 major facilitator superfamily domain containing 12 2 2
MIRT717134 EBPL emopamil binding protein like 2 2
MIRT717248 TMEM246 transmembrane protein 246 2 2
MIRT717997 ZNF79 zinc finger protein 79 2 2
MIRT718341 PURA purine rich element binding protein A 2 2
MIRT719587 TFCP2L1 transcription factor CP2 like 1 2 2
MIRT720520 PTGR2 prostaglandin reductase 2 2 2
MIRT720671 SLC39A13 solute carrier family 39 member 13 2 2
MIRT721213 DCLK3 doublecortin like kinase 3 2 2
MIRT721757 INF2 inverted formin, FH2 and WH2 domain containing 2 2
MIRT721826 POU6F1 POU class 6 homeobox 1 2 2
MIRT722091 SUSD1 sushi domain containing 1 2 2
MIRT722275 LURAP1 leucine rich adaptor protein 1 2 2
MIRT722802 ARHGAP19 Rho GTPase activating protein 19 2 2
MIRT722866 FAM212B family with sequence similarity 212 member B 2 2
MIRT723113 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT724378 NEK8 NIMA related kinase 8 2 2
MIRT732775 PYCR1 pyrroline-5-carboxylate reductase 1 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-2355 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-2355-5p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-2355-5p Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-2355-5p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-2355-5p Gefitinib 123631 NSC715055 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-2355-5p Temozolomide 5394 NSC362856 approved resistant High Glioma tissue
hsa-miR-2355-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-2355-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-2355-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-2355-5p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-2355-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (TOV-112D)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (OVSAHO)

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