pre-miRNA Information
pre-miRNA hsa-mir-6769b   
Genomic Coordinates chr1: 206474803 - 206474864
Description Homo sapiens miR-6769b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6769b-3p
Sequence 42| CCCUCUCUGUCCCACCCAUAG |62
Evidence Experimental
Experiments Meta-analysis
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26671848 9 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs555627187 3 dbSNP
rs782102173 4 dbSNP
rs201952639 7 dbSNP
rs782001154 9 dbSNP
rs1488064450 15 dbSNP
rs782111367 16 dbSNP
rs370859899 18 dbSNP
rs1305197911 19 dbSNP
Putative Targets

Gene Information
Gene Symbol C11orf54   
Synonyms PTD012, PTOD012
Description chromosome 11 open reading frame 54
Transcript NM_014039   
Expression
Putative miRNA Targets on C11orf54
3'UTR of C11orf54
(miRNA target sites are highlighted)
>C11orf54|NM_014039|3'UTR
   1 ATCAGCTGATACTTATTTAGAAAAAGAAATAATTAAGGTTAATTAATTGATTGACTTATTAATTAATACTGATATAAAAC
  81 CAATAGAAATGATCCCACAGGCCAGGCACAATGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCTGAGGCAGGAAGCA
 161 CACTGGAGCCCAGGAGTTTGAGACCAGCTTGGGCAACATAGCAAGACCCTGTCTATTTTTTTAAAAAAGTAAAAAATAGA
 241 AATTATCTCACTACTTAAATCCCATTTTTTTCACTTCATATGAAAGAACATATTGATAGTATATTCTATATTATTTCATA
 321 GATCTGTCTGAAAGAGATTGGGAACAAAAATATCTAATTGAGATATTCTTTAATTTTTTACATAGCAGCTTTATTTTTTT
 401 TATTCTGTAGTATCAGCGAAATCAGTCATGTTTATACCTTGAATATAAATATCAGGAATCATGCAATTATTTCTACTATG
 481 TATTTAGTAGTATCTTATATTTGTATAACATTATTACATTTTGCAAATTAGTATCACAACTGCTAAGTAGATGTTTCTGA
 561 GTATTAGAAAAATCAGTGTTATTACCTGCAGGATATTAAAAAACATTTGAAAAAGAGAAAAAGAAAAATCAGTGTTTAGA
 641 AATGTTGATAGTTATTGAATCTTTGAATTGAATTTTAAAAATCCATTCTAGTAATCAGAGTATACTTTTTTTATAGAACA
 721 AGGTGGCAGGTGGGGAGCCCTTTACCCTTCTGGTGAAGTTAAACCATAGAAGTTTACAATTTGCCTTTCACAAACATTAG
 801 CAGTCCGGGCATGGTGGCTGAAGCCTGTGATCCCAGCATGTTGGGAGGCCGAGTGGGAGGATTGCCTGAGCCTAGGAGTT
 881 TAAACCAGCCTGGGCACCATGGTGAGACCCCATCTCTATTATTTAAAATGTTTCTTAAATAAAAAAAACACAAACATTAG
 961 CAACTAGTTGGCTAGCCATAATTCCTCCCTTGTTTCGATTGCCAGTTAGAAGCAATTTTTATTTCACTGGTTATTTGCAA
1041 GAGAAGGGGTAAAAAAACAGCATCAGAGTGCAACACTGAAGTGAGCTTACTTTAATTTGTAAGTGAAGCTGTTGCTGAAC
1121 ATGACCACTATCGTTGCTGAAATATAAAATTATACTCACTGATTGTAATGGTTGAAATTTTCCTGAATAATCATTAGCCA
1201 AAGATCAACTCTCTAATGGTGCTAATGGCAATCTAGCTAATGTGCAAATTTAGGAAGTCTTCAGTACTAAGTACATAATT
1281 TTCAAATAATATTTTTTAATTGTCTACTTTGGATGTTAGCTATGTCTTGTGAGTATAAATTCCAATTTTAAGCACTATTT
1361 TGATGCAAAAAAATGAATAAAAAATTTAATTTATGATATGTTTGTAATATCTTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gauACCCACC--CUGUCUCUCCc 5'
             |||| ||  ||  |:|||| 
Target 5' tgtTGGGAGGCCGAGTGGGAGGa 3'
839 - 861 116.00 -16.00
2
miRNA  3' gaUACCCACCCUGUCUCUccc 5'
            ||  ||  || |||||   
Target 5' agATCTGTCTGAAAGAGAttg 3'
320 - 340 115.00 -7.30
3
miRNA  3' gauacCCACC--CUGUCUCUCcc 5'
               |||||  |:::|:|||  
Target 5' aacaaGGTGGCAGGTGGGGAGcc 3'
717 - 739 110.00 -18.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN20108583 27 COSMIC
COSN30518016 35 COSMIC
COSN31558423 70 COSMIC
COSN5924670 98 COSMIC
COSN28571484 125 COSMIC
COSN17037796 309 COSMIC
COSN18980436 448 COSMIC
COSN29598711 851 COSMIC
COSN23322528 1649 COSMIC
COSN7292777 1686 COSMIC
COSN25472360 1904 COSMIC
COSN25952704 1907 COSMIC
COSN25163733 1911 COSMIC
COSN7292778 1912 COSMIC
COSN20764514 1928 COSMIC
COSN10094710 2613 COSMIC
COSN16952113 2764 COSMIC
COSN20874682 3006 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs755270663 4 dbSNP
rs1456852947 10 dbSNP
rs758883755 11 dbSNP
rs1040612653 12 dbSNP
rs1257094674 17 dbSNP
rs201221620 21 dbSNP
rs780599730 24 dbSNP
rs10552778 25 dbSNP
rs72097212 25 dbSNP
rs750255418 25 dbSNP
rs1233943154 26 dbSNP
rs201137929 27 dbSNP
rs1319841143 29 dbSNP
rs765460647 29 dbSNP
rs1449253750 31 dbSNP
rs752905375 32 dbSNP
rs1229526114 36 dbSNP
rs550272452 38 dbSNP
rs755628191 39 dbSNP
rs1463868098 44 dbSNP
rs777352912 46 dbSNP
rs777803259 46 dbSNP
rs1417723548 47 dbSNP
rs200896390 50 dbSNP
rs757237467 52 dbSNP
rs998687769 56 dbSNP
rs1162692566 58 dbSNP
rs1028299241 71 dbSNP
rs959369620 73 dbSNP
rs1328139264 74 dbSNP
rs1318662925 75 dbSNP
rs954026390 95 dbSNP
rs1005476288 107 dbSNP
rs535869260 110 dbSNP
rs1386265773 113 dbSNP
rs1338905653 118 dbSNP
rs1470452375 129 dbSNP
rs1017010663 141 dbSNP
rs1282892608 148 dbSNP
rs961483487 149 dbSNP
rs1476636223 151 dbSNP
rs1374156095 152 dbSNP
rs1193178786 154 dbSNP
rs1127582 158 dbSNP
rs973337015 162 dbSNP
rs1245410164 163 dbSNP
rs1010888692 167 dbSNP
rs1461516678 169 dbSNP
rs376702873 172 dbSNP
rs1277214884 187 dbSNP
rs1198249262 188 dbSNP
rs1022497156 200 dbSNP
rs955701458 202 dbSNP
rs1227630010 209 dbSNP
rs1270696664 209 dbSNP
rs966974823 211 dbSNP
rs1436186292 216 dbSNP
rs1362744282 223 dbSNP
rs985710779 223 dbSNP
rs978247182 229 dbSNP
rs1339174766 232 dbSNP
rs1244760436 238 dbSNP
rs1358807465 240 dbSNP
rs928130986 256 dbSNP
rs911441341 264 dbSNP
rs1397352340 265 dbSNP
rs1411726990 265 dbSNP
rs776334020 275 dbSNP
rs1215164150 277 dbSNP
rs990996570 278 dbSNP
rs1387422450 282 dbSNP
rs1184594757 286 dbSNP
rs916358971 290 dbSNP
rs74467462 302 dbSNP
rs1048797025 304 dbSNP
rs1464166568 308 dbSNP
rs912995994 309 dbSNP
rs759229653 319 dbSNP
rs907752310 323 dbSNP
rs1273160898 325 dbSNP
rs1340013026 330 dbSNP
rs1209619110 343 dbSNP
rs1246459496 346 dbSNP
rs940594140 353 dbSNP
rs945803060 359 dbSNP
rs1045863300 364 dbSNP
rs907053365 367 dbSNP
rs1001284923 374 dbSNP
rs1040175900 383 dbSNP
rs1428306123 387 dbSNP
rs1164835652 394 dbSNP
rs1368013027 394 dbSNP
rs901692315 395 dbSNP
rs532737141 399 dbSNP
rs887688901 409 dbSNP
rs1412135766 417 dbSNP
rs1179734928 435 dbSNP
rs1470973229 442 dbSNP
rs1251861985 454 dbSNP
rs1260811714 470 dbSNP
rs1005549897 471 dbSNP
rs114013326 479 dbSNP
rs897263282 481 dbSNP
rs1320865756 485 dbSNP
rs994278799 488 dbSNP
rs1225641315 491 dbSNP
rs1351674212 499 dbSNP
rs1186828117 501 dbSNP
rs15345 513 dbSNP
rs1287739499 525 dbSNP
rs1030118800 527 dbSNP
rs1347535430 538 dbSNP
rs1304253369 540 dbSNP
rs1436462286 542 dbSNP
rs1348453543 543 dbSNP
rs1161776998 548 dbSNP
rs1402018229 552 dbSNP
rs1412274468 555 dbSNP
rs1158038992 564 dbSNP
rs1471321687 577 dbSNP
rs1476191749 579 dbSNP
rs1157054372 589 dbSNP
rs1388124001 590 dbSNP
rs1244696932 591 dbSNP
rs1217690256 607 dbSNP
rs1465224642 612 dbSNP
rs1457996400 614 dbSNP
rs1226834027 618 dbSNP
rs1050257397 620 dbSNP
rs955572994 635 dbSNP
rs985617584 643 dbSNP
rs1018575843 646 dbSNP
rs752709929 651 dbSNP
rs1010860695 653 dbSNP
rs1290968413 654 dbSNP
rs756211772 656 dbSNP
rs1290942790 657 dbSNP
rs182857403 662 dbSNP
rs1335527793 666 dbSNP
rs188198554 673 dbSNP
rs1234524646 687 dbSNP
rs769635448 714 dbSNP
rs1407600579 724 dbSNP
rs912910387 728 dbSNP
rs945679352 734 dbSNP
rs558670124 738 dbSNP
rs1035173412 739 dbSNP
rs1188275587 747 dbSNP
rs576973387 747 dbSNP
rs1449809550 750 dbSNP
rs1247243742 752 dbSNP
rs1239366622 766 dbSNP
rs1454648223 767 dbSNP
rs1462851338 769 dbSNP
rs1256597310 770 dbSNP
rs928340556 771 dbSNP
rs1310578611 773 dbSNP
rs1262245201 777 dbSNP
rs775407924 778 dbSNP
rs1229839365 779 dbSNP
rs1482194322 784 dbSNP
rs1295902426 789 dbSNP
rs1432354384 791 dbSNP
rs1407860071 799 dbSNP
rs1303123536 807 dbSNP
rs1465101241 808 dbSNP
rs961143434 812 dbSNP
rs937210783 826 dbSNP
rs991034703 827 dbSNP
rs1023385276 839 dbSNP
rs764239792 840 dbSNP
rs1389280601 842 dbSNP
rs754018701 844 dbSNP
rs1186453883 845 dbSNP
rs951777198 851 dbSNP
rs1180058099 852 dbSNP
rs1257109958 854 dbSNP
rs1411380123 855 dbSNP
rs1419871751 863 dbSNP
rs1161630047 875 dbSNP
rs1206446753 879 dbSNP
rs544681694 890 dbSNP
rs887721420 894 dbSNP
rs941941099 903 dbSNP
rs1341511010 907 dbSNP
rs371012093 909 dbSNP
rs1395139533 919 dbSNP
rs1376288829 926 dbSNP
rs1299419704 934 dbSNP
rs1410290877 941 dbSNP
rs574333569 941 dbSNP
rs984420414 942 dbSNP
rs1377743312 949 dbSNP
rs1368875094 950 dbSNP
rs1164320131 953 dbSNP
rs907549270 968 dbSNP
rs1018087085 973 dbSNP
rs940595292 977 dbSNP
rs1183002071 980 dbSNP
rs1305604431 989 dbSNP
rs897154881 993 dbSNP
rs1357465456 997 dbSNP
rs1391612323 998 dbSNP
rs1319561561 1013 dbSNP
rs1289619587 1014 dbSNP
rs1409893945 1015 dbSNP
rs1308617512 1016 dbSNP
rs1310091615 1029 dbSNP
rs1306076587 1046 dbSNP
rs757408615 1047 dbSNP
rs572168838 1049 dbSNP
rs1391132214 1050 dbSNP
rs151053517 1051 dbSNP
rs923241572 1052 dbSNP
rs1160263924 1062 dbSNP
rs1472286595 1077 dbSNP
rs931798701 1079 dbSNP
rs891199613 1083 dbSNP
rs1251154841 1087 dbSNP
rs1481038929 1090 dbSNP
rs1050262807 1096 dbSNP
rs1267035044 1121 dbSNP
rs7310 1122 dbSNP
rs1018446487 1128 dbSNP
rs1269624225 1131 dbSNP
rs764024836 1133 dbSNP
rs1043679214 1134 dbSNP
rs902543611 1136 dbSNP
rs1285939897 1137 dbSNP
rs999558445 1146 dbSNP
rs1035669895 1150 dbSNP
rs1428354588 1153 dbSNP
rs1331624896 1166 dbSNP
rs1390609416 1169 dbSNP
rs957493057 1169 dbSNP
rs1168573004 1178 dbSNP
rs746156027 1189 dbSNP
rs574863420 1199 dbSNP
rs1456932395 1206 dbSNP
rs1386488837 1212 dbSNP
rs758797745 1214 dbSNP
rs1175567068 1216 dbSNP
rs1478612171 1222 dbSNP
rs1377547950 1234 dbSNP
rs1197459441 1235 dbSNP
rs192785174 1238 dbSNP
rs1249089696 1240 dbSNP
rs1462003646 1243 dbSNP
rs1265633418 1261 dbSNP
rs967082987 1275 dbSNP
rs1012787724 1299 dbSNP
rs1345192050 1302 dbSNP
rs1274142962 1304 dbSNP
rs1299408606 1305 dbSNP
rs1365006403 1307 dbSNP
rs1023815362 1324 dbSNP
rs7814 1330 dbSNP
rs1298098107 1333 dbSNP
rs928426390 1334 dbSNP
rs1336465544 1338 dbSNP
rs984554446 1352 dbSNP
rs528035923 1357 dbSNP
rs552599134 1361 dbSNP
rs1401638647 1367 dbSNP
rs991314142 1367 dbSNP
rs763093235 1374 dbSNP
rs941847593 1375 dbSNP
rs1308017422 1379 dbSNP
rs1206653163 1381 dbSNP
rs962001138 1385 dbSNP
rs1188341598 1387 dbSNP
rs975806918 1389 dbSNP
rs576826568 1396 dbSNP
rs531829594 1397 dbSNP
rs34862874 1400 dbSNP
rs897725573 1401 dbSNP
rs930018945 1427 dbSNP
rs1198619255 1429 dbSNP
rs118091217 1435 dbSNP
rs1388621082 1444 dbSNP
rs772590998 1445 dbSNP
rs914420825 1447 dbSNP
rs891251390 1449 dbSNP
rs1006988539 1453 dbSNP
rs1039771621 1456 dbSNP
rs1339897346 1459 dbSNP
rs1447976972 1474 dbSNP
rs893327202 1475 dbSNP
rs946781521 1477 dbSNP
rs1412149987 1487 dbSNP
rs1371698744 1493 dbSNP
rs1168586908 1501 dbSNP
rs1428184203 1504 dbSNP
rs1043774397 1521 dbSNP
rs1164587003 1522 dbSNP
rs606357 1524 dbSNP
rs1306087372 1539 dbSNP
rs1020562709 1551 dbSNP
rs879398604 1553 dbSNP
rs1412164007 1554 dbSNP
rs1435004396 1556 dbSNP
rs1252449869 1558 dbSNP
rs532897043 1562 dbSNP
rs935323179 1565 dbSNP
rs968014443 1566 dbSNP
rs1229066720 1579 dbSNP
rs1002581255 1583 dbSNP
rs1282700353 1584 dbSNP
rs1460582717 1605 dbSNP
rs1230296021 1613 dbSNP
rs1351227556 1624 dbSNP
rs1056469275 1631 dbSNP
rs1326249051 1634 dbSNP
rs896695536 1642 dbSNP
rs114196166 1643 dbSNP
rs1324618545 1647 dbSNP
rs1405526946 1651 dbSNP
rs1045230407 1678 dbSNP
rs1432557563 1681 dbSNP
rs887927052 1685 dbSNP
rs547826608 1691 dbSNP
rs1412134380 1694 dbSNP
rs1014672739 1701 dbSNP
rs908939508 1708 dbSNP
rs666136 1710 dbSNP
rs774056351 1715 dbSNP
rs997552768 1719 dbSNP
rs759364584 1720 dbSNP
rs1450887176 1723 dbSNP
rs1271474341 1728 dbSNP
rs1210875176 1731 dbSNP
rs534051510 1745 dbSNP
rs919221850 1749 dbSNP
rs1227021877 1756 dbSNP
rs1370374901 1761 dbSNP
rs1276025438 1768 dbSNP
rs1436203548 1769 dbSNP
rs933226778 1776 dbSNP
rs1051654347 1778 dbSNP
rs1458511241 1784 dbSNP
rs558592898 1793 dbSNP
rs559810723 1794 dbSNP
rs78074980 1795 dbSNP
rs1463733072 1796 dbSNP
rs1427173709 1810 dbSNP
rs118166053 1811 dbSNP
rs529080192 1813 dbSNP
rs1039823977 1815 dbSNP
rs893212574 1818 dbSNP
rs914516929 1837 dbSNP
rs1465515047 1840 dbSNP
rs1267519544 1847 dbSNP
rs1476663173 1850 dbSNP
rs1180685118 1851 dbSNP
rs1410989947 1854 dbSNP
rs1213712686 1863 dbSNP
rs968512102 1872 dbSNP
rs1279918887 1873 dbSNP
rs780268434 1873 dbSNP
rs1219212269 1874 dbSNP
rs977261062 1880 dbSNP
rs1165027358 1882 dbSNP
rs1300304997 1883 dbSNP
rs1436744330 1885 dbSNP
rs1365492046 1892 dbSNP
rs903466525 1893 dbSNP
rs1419507284 1894 dbSNP
rs547900117 1895 dbSNP
rs1317331194 1896 dbSNP
rs1345618079 1902 dbSNP
rs1035862717 1903 dbSNP
rs76402643 1904 dbSNP
rs775473248 1911 dbSNP
rs556679279 1912 dbSNP
rs963457164 1917 dbSNP
rs971958135 1931 dbSNP
rs183765418 1933 dbSNP
rs1247641233 1935 dbSNP
rs1056837294 1941 dbSNP
rs542242035 1950 dbSNP
rs1327305905 1962 dbSNP
rs1238149642 1972 dbSNP
rs1228069228 1974 dbSNP
rs917941224 1976 dbSNP
rs879934734 1977 dbSNP
rs987812698 1982 dbSNP
rs1229583158 1984 dbSNP
rs948056519 1998 dbSNP
rs1045328292 2005 dbSNP
rs910442909 2008 dbSNP
rs1237354016 2011 dbSNP
rs1380657296 2015 dbSNP
rs760687300 2022 dbSNP
rs1187995185 2024 dbSNP
rs1039707877 2028 dbSNP
rs1006391115 2036 dbSNP
rs1170480714 2038 dbSNP
rs1430133605 2039 dbSNP
rs1389381897 2041 dbSNP
rs914698250 2044 dbSNP
rs1425817447 2046 dbSNP
rs1414543019 2060 dbSNP
rs1181368353 2061 dbSNP
rs1259052018 2068 dbSNP
rs1036534365 2069 dbSNP
rs1041768601 2074 dbSNP
rs1254589884 2074 dbSNP
rs1484765943 2074 dbSNP
rs947449063 2074 dbSNP
rs1250008056 2084 dbSNP
rs1471391170 2085 dbSNP
rs372820033 2097 dbSNP
rs1408431655 2101 dbSNP
rs938838172 2102 dbSNP
rs1232143209 2105 dbSNP
rs897537319 2107 dbSNP
rs548750709 2111 dbSNP
rs1173725094 2116 dbSNP
rs753803680 2121 dbSNP
rs1369678541 2129 dbSNP
rs894714603 2132 dbSNP
rs1374733605 2141 dbSNP
rs1369258915 2148 dbSNP
rs1030387333 2167 dbSNP
rs1415369146 2171 dbSNP
rs572360354 2173 dbSNP
rs1314810454 2186 dbSNP
rs1183482031 2202 dbSNP
rs1472553839 2220 dbSNP
rs1015876399 2222 dbSNP
rs546508394 2225 dbSNP
rs1441748641 2227 dbSNP
rs564600231 2231 dbSNP
rs568675665 2235 dbSNP
rs1212738486 2244 dbSNP
rs1353126612 2251 dbSNP
rs879060531 2257 dbSNP
rs1331972645 2274 dbSNP
rs1289718049 2276 dbSNP
rs1217784547 2282 dbSNP
rs1228864293 2292 dbSNP
rs543572937 2294 dbSNP
rs562249163 2299 dbSNP
rs1026041101 2302 dbSNP
rs1391240995 2309 dbSNP
rs1325412773 2310 dbSNP
rs1460098930 2312 dbSNP
rs1390840488 2322 dbSNP
rs968647432 2340 dbSNP
rs750684681 2341 dbSNP
rs924479717 2349 dbSNP
rs956979932 2351 dbSNP
rs1201693193 2352 dbSNP
rs1434102662 2355 dbSNP
rs199514014 2363 dbSNP
rs987289913 2369 dbSNP
rs992234531 2370 dbSNP
rs918023749 2373 dbSNP
rs1017555415 2378 dbSNP
rs1258987379 2379 dbSNP
rs1269416924 2380 dbSNP
rs1208796423 2385 dbSNP
rs1349415500 2387 dbSNP
rs1481823366 2389 dbSNP
rs1258862263 2400 dbSNP
rs1235354037 2402 dbSNP
rs948026666 2408 dbSNP
rs1302418156 2411 dbSNP
rs529787979 2416 dbSNP
rs1233053150 2418 dbSNP
rs914563617 2425 dbSNP
rs2077408 2426 dbSNP
rs942268693 2430 dbSNP
rs566498975 2449 dbSNP
rs1036909536 2453 dbSNP
rs977925250 2456 dbSNP
rs751985097 2458 dbSNP
rs147482748 2463 dbSNP
rs938874913 2473 dbSNP
rs1051510911 2474 dbSNP
rs552467172 2475 dbSNP
rs1445898110 2478 dbSNP
rs1409393298 2480 dbSNP
rs570620893 2485 dbSNP
rs1202043124 2486 dbSNP
rs1329647161 2488 dbSNP
rs1345643605 2491 dbSNP
rs1279592900 2493 dbSNP
rs781727024 2498 dbSNP
rs1231795748 2515 dbSNP
rs1344091197 2526 dbSNP
rs538047249 2544 dbSNP
rs188294448 2550 dbSNP
rs894766724 2552 dbSNP
rs948981650 2554 dbSNP
rs1434630435 2567 dbSNP
rs1375358562 2568 dbSNP
rs1021250250 2580 dbSNP
rs1303099640 2594 dbSNP
rs1372251179 2596 dbSNP
rs780841419 2598 dbSNP
rs1237133524 2601 dbSNP
rs1431983559 2603 dbSNP
rs745426009 2604 dbSNP
rs112066763 2606 dbSNP
rs775282966 2607 dbSNP
rs1037879532 2611 dbSNP
rs904418521 2613 dbSNP
rs898845050 2623 dbSNP
rs1474879113 2627 dbSNP
rs993149571 2634 dbSNP
rs1026511275 2639 dbSNP
rs1339317505 2645 dbSNP
rs998799756 2652 dbSNP
rs762767445 2654 dbSNP
rs1442561185 2655 dbSNP
rs1256679561 2656 dbSNP
rs1208697444 2668 dbSNP
rs1194702587 2670 dbSNP
rs1032027304 2687 dbSNP
rs1214137609 2691 dbSNP
rs7943660 2699 dbSNP
rs1286233032 2707 dbSNP
rs1245611369 2715 dbSNP
rs1354949383 2717 dbSNP
rs1439174730 2718 dbSNP
rs1008773389 2719 dbSNP
rs1252146291 2725 dbSNP
rs541205559 2726 dbSNP
rs1195282196 2735 dbSNP
rs1388195030 2743 dbSNP
rs964505368 2746 dbSNP
rs1475060908 2747 dbSNP
rs1025055171 2756 dbSNP
rs78916458 2757 dbSNP
rs545847620 2758 dbSNP
rs909225953 2762 dbSNP
rs1185663368 2770 dbSNP
rs1473535576 2771 dbSNP
rs942237442 2783 dbSNP
rs1403800360 2788 dbSNP
rs969133480 2791 dbSNP
rs1292259507 2792 dbSNP
rs977433530 2792 dbSNP
rs1395493524 2796 dbSNP
rs558440152 2797 dbSNP
rs919531496 2808 dbSNP
rs576284868 2819 dbSNP
rs992841217 2843 dbSNP
rs748678035 2849 dbSNP
rs1279551863 2853 dbSNP
rs1440430012 2858 dbSNP
rs770505646 2860 dbSNP
rs1325056173 2867 dbSNP
rs554305248 2874 dbSNP
rs1461666840 2889 dbSNP
rs1393014225 2890 dbSNP
rs1162189636 2891 dbSNP
rs1052404252 2895 dbSNP
rs1408620556 2905 dbSNP
rs1038372921 2912 dbSNP
rs920842861 2913 dbSNP
rs1248268928 2915 dbSNP
rs888828430 2917 dbSNP
rs943133694 2918 dbSNP
rs1042679968 2919 dbSNP
rs1271566489 2928 dbSNP
rs1210664637 2932 dbSNP
rs1270261824 2934 dbSNP
rs376660313 2937 dbSNP
rs1047388535 2942 dbSNP
rs1441113032 2945 dbSNP
rs778379113 2945 dbSNP
rs1008658651 2947 dbSNP
rs1323559395 2947 dbSNP
rs559871717 2957 dbSNP
rs1031579711 2958 dbSNP
rs1215289858 2960 dbSNP
rs1158229204 2961 dbSNP
rs1157092465 2964 dbSNP
rs530248526 2965 dbSNP
rs900353646 2969 dbSNP
rs768358822 2978 dbSNP
rs561987936 2980 dbSNP
rs895760018 2981 dbSNP
rs1022659575 2989 dbSNP
rs1190804612 2990 dbSNP
rs1014048810 3001 dbSNP
rs745492604 3007 dbSNP
rs774249709 3008 dbSNP
rs1314479389 3011 dbSNP
rs192374459 3022 dbSNP
rs959993263 3024 dbSNP
rs796082300 3031 dbSNP
rs1230193197 3041 dbSNP
rs75562591 3042 dbSNP
rs559964622 3046 dbSNP
rs1428110745 3050 dbSNP
rs1360820341 3054 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gauacccacccugUCUCUCCc 5'
                       ||||||| 
Target 5' ------------gAGAGAGGg 3'
1 - 9
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000528288.1 | 3UTR | GAGAGAGGGUAUGGCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
209 hsa-miR-6769b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT181753 UHMK1 U2AF homology motif kinase 1 2 2
MIRT287119 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT395372 CDC42EP4 CDC42 effector protein 4 2 4
MIRT472533 NACC1 nucleus accumbens associated 1 2 4
MIRT472611 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT482405 ADRB1 adrenoceptor beta 1 2 10
MIRT492330 SETD1B SET domain containing 1B 2 2
MIRT499238 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT512274 ARHGDIA Rho GDP dissociation inhibitor alpha 2 6
MIRT534548 RUNX1 runt related transcription factor 1 2 2
MIRT535374 PEX5L peroxisomal biogenesis factor 5 like 2 2
MIRT535424 PDZD8 PDZ domain containing 8 2 2
MIRT539329 AHSA2 activator of HSP90 ATPase homolog 2 2 4
MIRT569350 EFHC1 EF-hand domain containing 1 2 2
MIRT576116 Klf6 Kruppel-like factor 6 2 2
MIRT607241 LINS lines homolog 1 2 4
MIRT607364 ASAH2 N-acylsphingosine amidohydrolase 2 2 4
MIRT609572 CATSPER4 cation channel sperm associated 4 2 2
MIRT610045 SERPINA3 serpin family A member 3 2 2
MIRT610284 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT610302 KLHL21 kelch like family member 21 2 2
MIRT610393 FOXE1 forkhead box E1 2 2
MIRT610432 ASAH2B N-acylsphingosine amidohydrolase 2B 2 2
MIRT610510 BARHL2 BarH like homeobox 2 2 2
MIRT611818 FCRL4 Fc receptor like 4 2 2
MIRT612755 MYOCD myocardin 2 2
MIRT613698 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT613917 POU3F1 POU class 3 homeobox 1 2 2
MIRT615153 URGCP-MRPS24 URGCP-MRPS24 readthrough 2 2
MIRT615201 CLUAP1 clusterin associated protein 1 2 2
MIRT615338 ABCC12 ATP binding cassette subfamily C member 12 2 2
MIRT616706 UBXN2A UBX domain protein 2A 2 2
MIRT617186 GOSR2 golgi SNAP receptor complex member 2 2 4
MIRT617526 SORCS2 sortilin related VPS10 domain containing receptor 2 2 2
MIRT617596 NUDT5 nudix hydrolase 5 2 4
MIRT617763 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT618613 SHOX short stature homeobox 2 2
MIRT619301 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619515 TXLNB taxilin beta 2 2
MIRT619925 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT619942 C8orf33 chromosome 8 open reading frame 33 2 2
MIRT620025 NFAM1 NFAT activating protein with ITAM motif 1 2 2
MIRT620554 C10orf10 chromosome 10 open reading frame 10 2 4
MIRT620752 CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) 2 2
MIRT621798 TMEM233 transmembrane protein 233 2 2
MIRT621843 TGFBR3 transforming growth factor beta receptor 3 2 2
MIRT622693 PLSCR1 phospholipid scramblase 1 2 2
MIRT622733 PITPNM3 PITPNM family member 3 2 2
MIRT623004 ONECUT3 one cut homeobox 3 2 2
MIRT623211 MTFR1L mitochondrial fission regulator 1 like 2 2
MIRT623771 GPR37L1 G protein-coupled receptor 37 like 1 2 2
MIRT624119 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT624150 DIAPH1 diaphanous related formin 1 2 2
MIRT624443 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT624855 ABI2 abl interactor 2 2 2
MIRT625311 SHISA6 shisa family member 6 2 2
MIRT625741 MTSS1 MTSS1, I-BAR domain containing 2 2
MIRT626292 ZNF85 zinc finger protein 85 2 2
MIRT627400 TMEM170A transmembrane protein 170A 2 2
MIRT627464 SYNRG synergin gamma 2 2
MIRT627913 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT636508 GDAP1L1 ganglioside induced differentiation associated protein 1 like 1 2 2
MIRT636910 KIAA0408 KIAA0408 2 2
MIRT637302 ACTN2 actinin alpha 2 2 2
MIRT638230 SOGA3 SOGA family member 3 2 2
MIRT639880 STC1 stanniocalcin 1 2 2
MIRT639999 PHF21B PHD finger protein 21B 2 2
MIRT640149 CEP104 centrosomal protein 104 2 2
MIRT640699 SKI SKI proto-oncogene 2 2
MIRT640911 RAB13 RAB13, member RAS oncogene family 2 2
MIRT641518 CREBBP CREB binding protein 2 2
MIRT641990 OXSR1 oxidative stress responsive 1 2 2
MIRT642635 EPPIN epididymal peptidase inhibitor 2 2
MIRT642744 TDRD6 tudor domain containing 6 2 2
MIRT642759 SDHAF2 succinate dehydrogenase complex assembly factor 2 2 2
MIRT642787 CHCHD3 coiled-coil-helix-coiled-coil-helix domain containing 3 2 2
MIRT643054 EPPIN-WFDC6 EPPIN-WFDC6 readthrough 2 2
MIRT643104 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT643316 TMEM151B transmembrane protein 151B 2 2
MIRT643715 ITK IL2 inducible T-cell kinase 2 2
MIRT644087 A4GALT alpha 1,4-galactosyltransferase (P blood group) 2 2
MIRT644112 SEL1L3 SEL1L family member 3 2 2
MIRT644377 ZNF286A zinc finger protein 286A 2 2
MIRT644408 FRMD6 FERM domain containing 6 2 2
MIRT644684 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT644744 CCDC174 coiled-coil domain containing 174 2 2
MIRT644876 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT645417 FAM110A family with sequence similarity 110 member A 2 2
MIRT645928 PLXNA3 plexin A3 2 2
MIRT646181 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT646554 TMCC2 transmembrane and coiled-coil domain family 2 2 2
MIRT647235 OR6A2 olfactory receptor family 6 subfamily A member 2 2 2
MIRT647263 PTGDR2 prostaglandin D2 receptor 2 2 2
MIRT647660 FOXL1 forkhead box L1 2 2
MIRT648284 TRAPPC2L trafficking protein particle complex 2 like 2 2
MIRT648493 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT648963 TMEM45B transmembrane protein 45B 2 2
MIRT649511 RAB17 RAB17, member RAS oncogene family 2 2
MIRT650446 CPXM2 carboxypeptidase X, M14 family member 2 2 2
MIRT650712 KRT32 keratin 32 2 2
MIRT651069 ZNF518B zinc finger protein 518B 2 4
MIRT651090 ZNF516 zinc finger protein 516 2 2
MIRT651193 ZNF281 zinc finger protein 281 2 2
MIRT651330 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT651445 XKR4 XK related 4 2 2
MIRT651517 WNT4 Wnt family member 4 2 4
MIRT651694 VPS13D vacuolar protein sorting 13 homolog D 2 2
MIRT652173 TRIM66 tripartite motif containing 66 2 2
MIRT652432 TMEM239 transmembrane protein 239 2 2
MIRT652656 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT652707 THBS2 thrombospondin 2 2 2
MIRT652812 TBL2 transducin beta like 2 2 2
MIRT653350 SMG7 SMG7, nonsense mediated mRNA decay factor 2 2
MIRT653471 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 2
MIRT653658 SLC27A4 solute carrier family 27 member 4 2 2
MIRT654691 PSMB5 proteasome subunit beta 5 2 2
MIRT654735 PRLR prolactin receptor 2 2
MIRT654931 POLR3D RNA polymerase III subunit D 2 2
MIRT655209 PHAX phosphorylated adaptor for RNA export 2 2
MIRT655346 PCP4L1 Purkinje cell protein 4 like 1 2 2
MIRT655404 PANK1 pantothenate kinase 1 2 2
MIRT655482 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT655964 NDNF neuron derived neurotrophic factor 2 2
MIRT656017 MYPN myopalladin 2 2
MIRT656491 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT657151 ITGA1 integrin subunit alpha 1 2 2
MIRT657411 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT657608 GRID1 glutamate ionotropic receptor delta type subunit 1 2 2
MIRT658181 FBXO9 F-box protein 9 2 2
MIRT658932 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT659028 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659092 DENR density regulated re-initiation and release factor 2 2
MIRT659204 CYBB cytochrome b-245 beta chain 2 2
MIRT659718 CCDC93 coiled-coil domain containing 93 2 2
MIRT660185 BNC2 basonuclin 2 2 2
MIRT660805 AIFM2 apoptosis inducing factor, mitochondria associated 2 2 2
MIRT660900 ADCY6 adenylate cyclase 6 2 2
MIRT660925 ADAM19 ADAM metallopeptidase domain 19 2 2
MIRT661741 DTHD1 death domain containing 1 2 2
MIRT661998 EFTUD2 elongation factor Tu GTP binding domain containing 2 2 2
MIRT662639 PKHD1L1 PKHD1 like 1 2 2
MIRT664338 RAB8A RAB8A, member RAS oncogene family 2 2
MIRT666743 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT667070 PANK3 pantothenate kinase 3 2 2
MIRT667925 IGLON5 IgLON family member 5 2 2
MIRT668488 ETV3 ETS variant 3 2 2
MIRT668610 EHD4 EH domain containing 4 2 2
MIRT669419 ATP9A ATPase phospholipid transporting 9A (putative) 2 2
MIRT669652 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT674005 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT680447 SLCO5A1 solute carrier organic anion transporter family member 5A1 2 2
MIRT684326 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT685625 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT689978 ZNF185 zinc finger protein 185 with LIM domain 2 2
MIRT693962 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT698543 TFRC transferrin receptor 2 2
MIRT699982 RREB1 ras responsive element binding protein 1 2 2
MIRT702898 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT707383 VCAM1 vascular cell adhesion molecule 1 2 2
MIRT708312 CDH8 cadherin 8 2 2
MIRT708406 GRIN2A glutamate ionotropic receptor NMDA type subunit 2A 2 2
MIRT709299 LDLRAD4 low density lipoprotein receptor class A domain containing 4 2 2
MIRT710326 STK40 serine/threonine kinase 40 2 2
MIRT710729 C19orf68 zinc finger SWIM-type containing 9 2 2
MIRT710970 CMKLR1 chemerin chemokine-like receptor 1 2 2
MIRT711178 EMCN endomucin 2 2
MIRT711590 SETD1A SET domain containing 1A 2 2
MIRT711611 LHX5 LIM homeobox 5 2 2
MIRT711701 GMPR guanosine monophosphate reductase 2 2
MIRT711850 AMOTL2 angiomotin like 2 2 2
MIRT712358 NAT14 N-acetyltransferase 14 (putative) 2 2
MIRT712377 MTPN myotrophin 2 2
MIRT712469 KCNC3 potassium voltage-gated channel subfamily C member 3 2 2
MIRT712839 RHOA ras homolog family member A 2 2
MIRT713592 ANKMY1 ankyrin repeat and MYND domain containing 1 2 2
MIRT713982 ASIC4 acid sensing ion channel subunit family member 4 2 2
MIRT714534 ZBTB39 zinc finger and BTB domain containing 39 2 2
MIRT714570 GALNT10 polypeptide N-acetylgalactosaminyltransferase 10 2 2
MIRT714610 EXO5 exonuclease 5 2 2
MIRT714943 ZNF330 zinc finger protein 330 2 2
MIRT715132 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT716018 TMPRSS5 transmembrane protease, serine 5 2 2
MIRT716204 TYW3 tRNA-yW synthesizing protein 3 homolog 2 2
MIRT716674 PPP6R1 protein phosphatase 6 regulatory subunit 1 2 2
MIRT717366 EDN2 endothelin 2 2 2
MIRT718110 CRTC1 CREB regulated transcription coactivator 1 2 2
MIRT718502 GYS1 glycogen synthase 1 2 2
MIRT719146 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT719415 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT719986 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT720347 BACE2 beta-site APP-cleaving enzyme 2 2 2
MIRT720452 SLC16A5 solute carrier family 16 member 5 2 2
MIRT720493 TMEM178B transmembrane protein 178B 2 2
MIRT720666 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT721091 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT721334 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT721384 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721508 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT721827 POU6F1 POU class 6 homeobox 1 2 2
MIRT722136 TTLL11 tubulin tyrosine ligase like 11 2 2
MIRT723070 GGA1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 2 2
MIRT723115 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT723374 ZNF470 zinc finger protein 470 2 2
MIRT724446 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT724528 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT724643 PKDREJ polycystin family receptor for egg jelly 2 2
MIRT724711 CRAMP1L cramped chromatin regulator homolog 1 2 2
MIRT724750 ZNF391 zinc finger protein 391 2 2
MIRT724770 PSG4 pregnancy specific beta-1-glycoprotein 4 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6769b Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-6769b Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-miR-6769b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-6769b-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-6769b-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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