pre-miRNA Information
pre-miRNA hsa-mir-4464   
Genomic Coordinates chr6: 90312742 - 90312833
Description Homo sapiens miR-4464 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4464
Sequence 12| AAGGUUUGGAUAGAUGCAAUA |32
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 12 6 + 90312764 29233923 MiREDiBase
A-to-I 14 6 + 90312766 29233923 MiREDiBase
A-to-I 19 6 + 90312771 29233923 MiREDiBase
A-to-I 21 6 + 90312773 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1240632245 2 dbSNP
rs34899210 2 dbSNP
rs1003034046 13 dbSNP
rs1475351324 14 dbSNP
rs1257582329 17 dbSNP
rs1193587810 20 dbSNP
Putative Targets

Gene Information
Gene Symbol PTPRC   
Synonyms B220, CD45, CD45R, GP180, L-CA, LCA, LY5, T200
Description protein tyrosine phosphatase, receptor type C
Transcript NM_002838   
Other Transcripts NM_080921   
Expression
Putative miRNA Targets on PTPRC
3'UTR of PTPRC
(miRNA target sites are highlighted)
>PTPRC|NM_002838|3'UTR
   1 GAAAAGACATAAATGAGGAAACTCCAAACCTCCTGTTAGCTGTTATTTCTATTTTTGTAGAAGTAGGAAGTGAAAATAGG
  81 TATACAGTGGATTAATTAAATGCAGCGAACCAATATTTGTAGAAGGGTTATATTTTACTACTGTGGAAAAATATTTAAGA
 161 TAGTTTTGCCAGAACAGTTTGTACAGACGTATGCTTATTTTAAAATTTTATCTCTTATTCAGTAAAAAACAACTTCTTTG
 241 TAATCGTTATGTGTGTATATGTATGTGTGTATGGGTGTGTGTTTGTGTGAGAGACAGAGAAAGAGAGAGAATTCTTTCAA
 321 GTGAATCTAAAAGCTTTTGCTTTTCCTTTGTTTTTATGAAGAAAAAATACATTTTATATTAGAAGTGTTAACTTAGCTTG
 401 AAGGATCTGTTTTTAAAAATCATAAACTGTGTGCAGACTCAATAAAATCATGTACATTTCTGAAATGACCTCAAGATGTC
 481 CTCCTTGTTCTACTCATATATATCTATCTTATATAGTTTACTATTTTACTTCTAGAGATAGTACATAAAGGTGGTATGTG
 561 TGTGTATGCTACTACAAAAAAGTTGTTAACTAAATTAACATTGGGAAATCTTATATTCCATATATTAGCATTTAGTCCAA
 641 TGTCTTTTTAAGCTTATTTAATTAAAAAATTTCCAGTGAGCTTATCATGCTGTCTTTACATGGGGTTTTCAATTTTGCAT
 721 GCTCGATTATTCCCTGTACAATATTTAAAATTTATTGCTTGATACTTTTGACAACAAATTAGGTTTTGTACAATTGAACT
 801 TAAATAAATGTCATTAAAATAAATAAATGCAATATGTATTAATATTCATTGTATAAAAATAGAAGAATACAAACATATTT
 881 GTTAAATATTTACATATGAAATTTAATATAGCTATTTTTATGGAATTTTTCATTGATATGAAAAATATGATATTGCATAT
 961 GCATAGTTCCCATGTTAAATCCCATTCATAACTTTCATTAAAGCATTTACTTTGAATTTCTCCAATGCTTAGAATGTTTT
1041 TACCAGGAATGGATGTCGCTAATCATAATAAAATTCAACCATTATTTTTTTCTTGTTTATAATACATTGTGTTATATGTT
1121 CAAATATGAAATGTGTATGCACCTATTGAAATATGTTTAATGCATTTATTAACATTTGCAGGACACTTTTACAGGCCCCA
1201 ATTATCCAATAGTCTAATAATTGTTTAAGATCTAGAAAAAAAAAATCAAGAATAGTGGTATTTTTCATGAAGTAATAAAA
1281 ACTCGTTTTGGTGAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auaacguagauAGGUUUGGAa 5'
                     ||||||||| 
Target 5' aatgaggaaacTCCAAACCTc 3'
12 - 32 150.00 -11.12
2
miRNA  3' auAAC---GUAGAUAGGUUUGGAa 5'
            |||   :|| |:|:||||: | 
Target 5' caTTGTGTTATATGTTCAAATATg 3'
1105 - 1128 115.00 -6.42
3
miRNA  3' auaacGUAGAUAGGUUUGGAa 5'
               ::||| |::||:|:| 
Target 5' tccaaTGTCTTTTTAAGCTTa 3'
636 - 656 112.00 -7.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1188399 285 ClinVar
COSN30515432 6 COSMIC
COSN31505932 13 COSMIC
COSN31496178 33 COSMIC
COSN30137373 41 COSMIC
COSN30172828 50 COSMIC
COSN31607603 50 COSMIC
COSN31613419 73 COSMIC
COSN6018265 88 COSMIC
COSN31499277 99 COSMIC
COSN13505346 108 COSMIC
COSN30171389 152 COSMIC
COSN7982974 190 COSMIC
COSN16486540 234 COSMIC
COSN20095705 420 COSMIC
COSN20095708 520 COSMIC
COSN9024689 561 COSMIC
COSN27674239 609 COSMIC
COSN9056304 636 COSMIC
COSN6018266 674 COSMIC
COSN8417649 732 COSMIC
COSN7197127 835 COSMIC
COSN24947572 941 COSMIC
COSN24036208 1059 COSMIC
COSN20191406 1073 COSMIC
COSN20095710 1246 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1488561526 2 dbSNP
rs745599172 3 dbSNP
rs747502666 3 dbSNP
rs769176065 5 dbSNP
rs776909166 7 dbSNP
rs748508947 8 dbSNP
rs563362029 9 dbSNP
rs775241521 12 dbSNP
rs1379480160 21 dbSNP
rs1437569466 24 dbSNP
rs1165751321 28 dbSNP
rs759332278 29 dbSNP
rs199817785 31 dbSNP
rs375555772 32 dbSNP
rs1198780525 33 dbSNP
rs1239696999 34 dbSNP
rs770772215 34 dbSNP
rs761395928 41 dbSNP
rs774149597 41 dbSNP
rs759204800 43 dbSNP
rs1392507217 44 dbSNP
rs552154189 47 dbSNP
rs773732637 49 dbSNP
rs775021859 50 dbSNP
rs1332829890 52 dbSNP
rs1270497374 53 dbSNP
rs1439999305 57 dbSNP
rs1199821810 60 dbSNP
rs141518131 64 dbSNP
rs534576178 69 dbSNP
rs886997684 71 dbSNP
rs1173803693 75 dbSNP
rs895878484 76 dbSNP
rs1378206374 77 dbSNP
rs1160053102 79 dbSNP
rs1195779927 81 dbSNP
rs1378384820 84 dbSNP
rs1367806990 86 dbSNP
rs1478247271 87 dbSNP
rs1185410064 93 dbSNP
rs546854643 94 dbSNP
rs1486653735 95 dbSNP
rs1013426373 102 dbSNP
rs568213546 106 dbSNP
rs1167048148 107 dbSNP
rs939923599 108 dbSNP
rs535631274 113 dbSNP
rs1331939536 114 dbSNP
rs898342806 114 dbSNP
rs1002064093 120 dbSNP
rs1282939151 127 dbSNP
rs181789215 131 dbSNP
rs745941348 131 dbSNP
rs1312984894 132 dbSNP
rs1398890928 146 dbSNP
rs1319941718 152 dbSNP
rs1358207135 152 dbSNP
rs1491519500 157 dbSNP
rs1491407012 158 dbSNP
rs1476158448 160 dbSNP
rs1438036639 162 dbSNP
rs1325150485 164 dbSNP
rs1331273491 169 dbSNP
rs1227164017 189 dbSNP
rs894590894 190 dbSNP
rs1216047560 192 dbSNP
rs1336066265 195 dbSNP
rs1320437025 202 dbSNP
rs1219838495 205 dbSNP
rs971681513 206 dbSNP
rs1273077233 207 dbSNP
rs1467222819 208 dbSNP
rs1271506817 209 dbSNP
rs1431029494 210 dbSNP
rs143113759 210 dbSNP
rs1321375686 211 dbSNP
rs1268335551 212 dbSNP
rs1462857089 212 dbSNP
rs1014246978 215 dbSNP
rs576083302 216 dbSNP
rs910751973 223 dbSNP
rs1371184327 224 dbSNP
rs1421751530 228 dbSNP
rs760442928 228 dbSNP
rs1171344474 233 dbSNP
rs1477837568 233 dbSNP
rs1195866547 236 dbSNP
rs1469233319 237 dbSNP
rs1257969850 241 dbSNP
rs1197302884 243 dbSNP
rs138481474 246 dbSNP
rs999077280 247 dbSNP
rs1294712428 249 dbSNP
rs558489291 256 dbSNP
rs1391003357 264 dbSNP
rs1214753190 268 dbSNP
rs1366433386 270 dbSNP
rs1381363626 272 dbSNP
rs1043734806 274 dbSNP
rs1342824303 275 dbSNP
rs1442814526 277 dbSNP
rs1033253429 278 dbSNP
rs1330519473 280 dbSNP
rs934669299 280 dbSNP
rs1356309950 282 dbSNP
rs1171265323 284 dbSNP
rs76256297 285 dbSNP
rs1423307282 288 dbSNP
rs1175829765 292 dbSNP
rs1293240237 292 dbSNP
rs762850349 292 dbSNP
rs975594005 293 dbSNP
rs1333256928 294 dbSNP
rs895912961 294 dbSNP
rs921017556 295 dbSNP
rs1204583025 296 dbSNP
rs1234006821 296 dbSNP
rs1247091675 296 dbSNP
rs764089642 296 dbSNP
rs1014789585 298 dbSNP
rs765103630 298 dbSNP
rs955310270 299 dbSNP
rs1203662622 300 dbSNP
rs186966321 301 dbSNP
rs1375405704 302 dbSNP
rs564629025 302 dbSNP
rs1194052704 305 dbSNP
rs558201495 307 dbSNP
rs1373711715 308 dbSNP
rs1314932621 310 dbSNP
rs963225967 310 dbSNP
rs777729876 311 dbSNP
rs559991273 312 dbSNP
rs1421303466 315 dbSNP
rs1368594320 318 dbSNP
rs1409339074 322 dbSNP
rs574972252 329 dbSNP
rs1452396090 344 dbSNP
rs1491196747 347 dbSNP
rs919862679 347 dbSNP
rs954374756 347 dbSNP
rs1491586158 348 dbSNP
rs192097196 349 dbSNP
rs965256484 354 dbSNP
rs375767308 356 dbSNP
rs542127055 356 dbSNP
rs1420709276 362 dbSNP
rs1481453959 362 dbSNP
rs1227682013 365 dbSNP
rs1353590010 366 dbSNP
rs1314874487 381 dbSNP
rs1415517726 383 dbSNP
rs570228964 386 dbSNP
rs1353949766 387 dbSNP
rs1455670326 388 dbSNP
rs1346163456 390 dbSNP
rs1164622887 392 dbSNP
rs563372552 392 dbSNP
rs1189412926 393 dbSNP
rs1414974646 393 dbSNP
rs1314036392 400 dbSNP
rs1335287554 403 dbSNP
rs144055623 405 dbSNP
rs917295459 406 dbSNP
rs1288451299 410 dbSNP
rs1354607754 411 dbSNP
rs1220686272 415 dbSNP
rs3216177 415 dbSNP
rs397840197 415 dbSNP
rs200552860 416 dbSNP
rs1482143261 425 dbSNP
rs1183572357 426 dbSNP
rs1044904551 430 dbSNP
rs1256726282 437 dbSNP
rs747070438 440 dbSNP
rs1418026082 443 dbSNP
rs1384149225 446 dbSNP
rs1363039051 454 dbSNP
rs1014756710 458 dbSNP
rs1293346128 462 dbSNP
rs1460246004 465 dbSNP
rs1045705781 470 dbSNP
rs1166371183 475 dbSNP
rs552215628 475 dbSNP
rs757279556 479 dbSNP
rs1461445565 482 dbSNP
rs1372009970 484 dbSNP
rs147330361 495 dbSNP
rs1381787375 499 dbSNP
rs998836771 500 dbSNP
rs1033222381 501 dbSNP
rs1037463004 501 dbSNP
rs553949351 501 dbSNP
rs1420003275 502 dbSNP
rs957654003 503 dbSNP
rs781280954 504 dbSNP
rs1229838436 506 dbSNP
rs1300910106 507 dbSNP
rs1308272844 507 dbSNP
rs1026168480 509 dbSNP
rs1373649105 512 dbSNP
rs1327092160 513 dbSNP
rs1467872713 514 dbSNP
rs954554406 516 dbSNP
rs202177084 517 dbSNP
rs1463113083 522 dbSNP
rs183925038 522 dbSNP
rs1172701683 523 dbSNP
rs1452270540 526 dbSNP
rs761521419 536 dbSNP
rs539832023 537 dbSNP
rs766024254 538 dbSNP
rs1017793143 539 dbSNP
rs528090159 551 dbSNP
rs1340223635 553 dbSNP
rs1255559834 555 dbSNP
rs964455968 557 dbSNP
rs1170868980 559 dbSNP
rs955129535 567 dbSNP
rs1304661807 573 dbSNP
rs979348223 576 dbSNP
rs926144956 580 dbSNP
rs1331529057 581 dbSNP
rs746035486 581 dbSNP
rs1301493332 582 dbSNP
rs989086528 582 dbSNP
rs1432503112 592 dbSNP
rs767089153 593 dbSNP
rs917493009 594 dbSNP
rs1174002454 597 dbSNP
rs1469485753 597 dbSNP
rs1361984271 599 dbSNP
rs908314426 604 dbSNP
rs1183990307 607 dbSNP
rs1211918149 609 dbSNP
rs1460775930 611 dbSNP
rs750970243 611 dbSNP
rs1208944976 621 dbSNP
rs1486757042 623 dbSNP
rs1256532689 624 dbSNP
rs950106826 637 dbSNP
rs565017967 642 dbSNP
rs961011335 642 dbSNP
rs1044364228 645 dbSNP
rs1335783700 654 dbSNP
rs927377020 654 dbSNP
rs941488086 654 dbSNP
rs1239526942 656 dbSNP
rs1376876869 658 dbSNP
rs1439749459 664 dbSNP
rs1192663498 676 dbSNP
rs1399894436 677 dbSNP
rs1392833592 680 dbSNP
rs1435299225 682 dbSNP
rs1470487276 684 dbSNP
rs1417125570 686 dbSNP
rs1185869648 690 dbSNP
rs973771089 690 dbSNP
rs78431102 693 dbSNP
rs899026187 696 dbSNP
rs568306927 705 dbSNP
rs937918068 706 dbSNP
rs990629119 711 dbSNP
rs917757083 712 dbSNP
rs1373011885 713 dbSNP
rs535294657 720 dbSNP
rs550333917 725 dbSNP
rs949277892 726 dbSNP
rs1356891077 727 dbSNP
rs543348876 734 dbSNP
rs1046213561 735 dbSNP
rs1429612792 742 dbSNP
rs77098225 745 dbSNP
rs537183989 753 dbSNP
rs1401120642 762 dbSNP
rs999986769 764 dbSNP
rs1162786018 765 dbSNP
rs1463019133 777 dbSNP
rs1418680607 778 dbSNP
rs934657283 780 dbSNP
rs1032745292 784 dbSNP
rs956221347 789 dbSNP
rs1054396271 793 dbSNP
rs186541721 795 dbSNP
rs1194323103 797 dbSNP
rs1220744805 798 dbSNP
rs1216107093 801 dbSNP
rs1301804358 801 dbSNP
rs1336228772 807 dbSNP
rs1290003111 817 dbSNP
rs1213518860 830 dbSNP
rs1337014987 833 dbSNP
rs988949150 835 dbSNP
rs1306692612 837 dbSNP
rs1369983416 838 dbSNP
rs1323743007 839 dbSNP
rs1395258856 841 dbSNP
rs1443043887 841 dbSNP
rs577214428 846 dbSNP
rs1368881141 849 dbSNP
rs535007569 851 dbSNP
rs749680449 855 dbSNP
rs1259876601 857 dbSNP
rs1408327747 858 dbSNP
rs971639094 861 dbSNP
rs553398379 866 dbSNP
rs1251541083 871 dbSNP
rs532105119 875 dbSNP
rs1469276844 878 dbSNP
rs1489217363 882 dbSNP
rs1191404717 890 dbSNP
rs997527950 900 dbSNP
rs1028461127 901 dbSNP
rs1203187529 905 dbSNP
rs941338289 911 dbSNP
rs550833337 915 dbSNP
rs1346818824 930 dbSNP
rs1477030537 930 dbSNP
rs772116103 932 dbSNP
rs1236272381 936 dbSNP
rs189804766 941 dbSNP
rs750075724 941 dbSNP
rs918639899 941 dbSNP
rs1440110892 943 dbSNP
rs1424909249 944 dbSNP
rs575027438 949 dbSNP
rs1434366907 958 dbSNP
rs891274784 961 dbSNP
rs1047516976 963 dbSNP
rs1008417098 966 dbSNP
rs1175991252 968 dbSNP
rs1015347466 970 dbSNP
rs542462625 973 dbSNP
rs944676190 974 dbSNP
rs1039361998 980 dbSNP
rs563834910 981 dbSNP
rs900190603 986 dbSNP
rs1277810076 989 dbSNP
rs149252413 994 dbSNP
rs1306121094 997 dbSNP
rs959294106 1002 dbSNP
rs1375567155 1004 dbSNP
rs1289029850 1010 dbSNP
rs991132183 1010 dbSNP
rs1414293681 1013 dbSNP
rs917865911 1015 dbSNP
rs1318436441 1016 dbSNP
rs576414060 1026 dbSNP
rs1287207698 1028 dbSNP
rs1157494538 1029 dbSNP
rs891528322 1034 dbSNP
rs1322979949 1043 dbSNP
rs775043682 1047 dbSNP
rs1241121704 1048 dbSNP
rs545970612 1051 dbSNP
rs934751767 1053 dbSNP
rs1054363544 1058 dbSNP
rs563335149 1059 dbSNP
rs971969978 1060 dbSNP
rs1213429968 1062 dbSNP
rs1318627615 1064 dbSNP
rs1268755784 1073 dbSNP
rs980402626 1075 dbSNP
rs1353647987 1077 dbSNP
rs528085388 1081 dbSNP
rs1295287432 1082 dbSNP
rs1396849926 1082 dbSNP
rs1361647986 1083 dbSNP
rs1287455202 1085 dbSNP
rs529865592 1085 dbSNP
rs569080418 1085 dbSNP
rs1390003224 1087 dbSNP
rs1180613174 1091 dbSNP
rs548522870 1093 dbSNP
rs893153114 1096 dbSNP
rs932695289 1097 dbSNP
rs1491588962 1098 dbSNP
rs1491475159 1099 dbSNP
rs566623240 1101 dbSNP
rs1358804436 1104 dbSNP
rs1184543156 1108 dbSNP
rs986840342 1110 dbSNP
rs1050411356 1112 dbSNP
rs1213004243 1116 dbSNP
rs911769631 1120 dbSNP
rs1332703804 1132 dbSNP
rs891414600 1133 dbSNP
rs1245663962 1137 dbSNP
rs1417645298 1140 dbSNP
rs114548539 1143 dbSNP
rs1038979944 1144 dbSNP
rs1384271820 1145 dbSNP
rs1340888755 1150 dbSNP
rs1015777761 1157 dbSNP
rs765925106 1164 dbSNP
rs1391606544 1169 dbSNP
rs1054089186 1171 dbSNP
rs995272701 1172 dbSNP
rs754320326 1177 dbSNP
rs1372138310 1179 dbSNP
rs1026765418 1180 dbSNP
rs1228348950 1186 dbSNP
rs1010027381 1187 dbSNP
rs959281576 1187 dbSNP
rs747109144 1194 dbSNP
rs1467060844 1197 dbSNP
rs990540288 1202 dbSNP
rs1210496652 1206 dbSNP
rs1480387872 1210 dbSNP
rs1350969145 1211 dbSNP
rs1045871319 1212 dbSNP
rs1303174416 1216 dbSNP
rs1343261020 1216 dbSNP
rs1232612642 1221 dbSNP
rs1373805568 1221 dbSNP
rs1324854231 1222 dbSNP
rs7411485 1230 dbSNP
rs1287266425 1231 dbSNP
rs1395157798 1232 dbSNP
rs1485536872 1232 dbSNP
rs1208693316 1233 dbSNP
rs1296039683 1235 dbSNP
rs1431284114 1236 dbSNP
rs1452407273 1236 dbSNP
rs148647175 1236 dbSNP
rs532613896 1236 dbSNP
rs561856404 1242 dbSNP
rs1025303799 1245 dbSNP
rs530432916 1248 dbSNP
rs1418522144 1251 dbSNP
rs182294317 1258 dbSNP
rs1207517068 1259 dbSNP
rs962892781 1260 dbSNP
rs1279947669 1261 dbSNP
rs1209168128 1263 dbSNP
rs1350504815 1267 dbSNP
rs1275897471 1268 dbSNP
rs1238984050 1272 dbSNP
rs1334618845 1273 dbSNP
rs1441844359 1276 dbSNP
rs1304192729 1278 dbSNP
rs995477303 1283 dbSNP
rs144487451 1285 dbSNP
rs951382056 1286 dbSNP
rs1404105036 1288 dbSNP
rs1413665821 1292 dbSNP
rs1453008527 1294 dbSNP
rs1332144154 1296 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000367376.2 | 3UTR | AAAUGAGGAAACUCCAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
81 hsa-miR-4464 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056004 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT061568 BTG2 BTG anti-proliferation factor 2 2 2
MIRT078651 ICT1 mitochondrial ribosomal protein L58 2 2
MIRT087551 YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta 2 4
MIRT088139 SEPT2 septin 2 2 4
MIRT095089 SEC24A SEC24 homolog A, COPII coat complex component 2 4
MIRT099065 FOXC1 forkhead box C1 2 4
MIRT150194 MIDN midnolin 2 2
MIRT178173 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT178942 C11ORF57 chromosome 11 open reading frame 57 2 2
MIRT188776 SESN2 sestrin 2 2 2
MIRT267026 EFHD2 EF-hand domain family member D2 2 2
MIRT307213 ACVR2B activin A receptor type 2B 2 2
MIRT324750 ACER2 alkaline ceramidase 2 2 2
MIRT442732 TEAD1 TEA domain transcription factor 1 2 2
MIRT444087 C12orf73 chromosome 12 open reading frame 73 2 2
MIRT445527 KLF9 Kruppel like factor 9 2 2
MIRT449604 INIP INTS3 and NABP interacting protein 2 2
MIRT451129 ZNF99 zinc finger protein 99 2 2
MIRT452271 RPL30 ribosomal protein L30 2 2
MIRT452486 DDX4 DEAD-box helicase 4 2 2
MIRT454868 DNAJC15 DnaJ heat shock protein family (Hsp40) member C15 2 6
MIRT455773 TSPAN6 tetraspanin 6 2 4
MIRT463844 WRN Werner syndrome RecQ like helicase 2 2
MIRT465036 TTC39C tetratricopeptide repeat domain 39C 2 2
MIRT465176 TRPV2 transient receptor potential cation channel subfamily V member 2 2 4
MIRT465294 TRIB3 tribbles pseudokinase 3 2 4
MIRT467931 SLC16A7 solute carrier family 16 member 7 2 2
MIRT471906 NUAK2 NUAK family kinase 2 2 2
MIRT472724 MTUS1 microtubule associated scaffold protein 1 2 6
MIRT479785 CCND1 cyclin D1 2 2
MIRT482446 ADM adrenomedullin 2 10
MIRT485365 MYLIP myosin regulatory light chain interacting protein 2 12
MIRT498399 KIF6 kinesin family member 6 2 2
MIRT503202 ACTB actin beta 2 6
MIRT503819 TMEM242 transmembrane protein 242 2 2
MIRT504706 ZNF117 zinc finger protein 117 2 2
MIRT507802 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT509968 KANSL1L KAT8 regulatory NSL complex subunit 1 like 2 4
MIRT517306 ELF4 E74 like ETS transcription factor 4 2 6
MIRT523900 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 6
MIRT532018 NOX5 NADPH oxidase 5 2 2
MIRT535334 PHACTR2 phosphatase and actin regulator 2 2 2
MIRT536944 HCN4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 2 4
MIRT539322 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT540189 GSTM4 glutathione S-transferase mu 4 2 2
MIRT545015 ZNF439 zinc finger protein 439 2 2
MIRT545265 TRIM36 tripartite motif containing 36 2 4
MIRT547230 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 4
MIRT548425 ELOVL5 ELOVL fatty acid elongase 5 2 2
MIRT549910 ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide 2 2
MIRT550185 TMEM106C transmembrane protein 106C 2 2
MIRT550775 ENOX2 ecto-NOX disulfide-thiol exchanger 2 2 4
MIRT552401 ZNF487P zinc finger protein 487 1 1
MIRT554782 RHEBP1 RHEB pseudogene 1 2 4
MIRT557311 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT558635 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT563168 RPS14 ribosomal protein S14 2 2
MIRT564886 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 2
MIRT565778 SEPHS1 selenophosphate synthetase 1 2 2
MIRT566480 PDCD4 programmed cell death 4 2 2
MIRT567206 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT568931 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT570698 FBXO41 F-box protein 41 2 2
MIRT573474 MTRNR2L9 MT-RNR2-like 9 2 2
MIRT576170 Hmox1 heme oxygenase 1 2 2
MIRT607555 GLI2 GLI family zinc finger 2 2 2
MIRT608203 ERBB2 erb-b2 receptor tyrosine kinase 2 2 2
MIRT609779 VWC2L von Willebrand factor C domain containing protein 2 like 2 4
MIRT616312 CELF2 CUGBP Elav-like family member 2 2 2
MIRT617190 CDH13 cadherin 13 2 2
MIRT626842 RPLP1 ribosomal protein lateral stalk subunit P1 2 2
MIRT636438 MARCH1 membrane associated ring-CH-type finger 1 2 2
MIRT639101 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT691018 CRTC3 CREB regulated transcription coactivator 3 2 2
MIRT700008 RPS21 ribosomal protein S21 2 2
MIRT701144 PANK1 pantothenate kinase 1 2 2
MIRT712691 NUDT7 nudix hydrolase 7 2 2
MIRT715505 MAZ MYC associated zinc finger protein 2 2
MIRT722509 PTPRC protein tyrosine phosphatase, receptor type C 2 2
MIRT724982 TNS1 tensin 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miR-4464 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4464 Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)

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