pre-miRNA Information
pre-miRNA hsa-mir-4457   
Genomic Coordinates chr5: 1309310 - 1309377
Description Homo sapiens miR-4457 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4457
Sequence 43| UCACAAGGUAUUGACUGGCGUA |64
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1031676297 8 dbSNP
rs1249861366 14 dbSNP
rs115769169 17 dbSNP
rs968846507 19 dbSNP
rs540870271 20 dbSNP
rs993130937 22 dbSNP
Putative Targets

Gene Information
Gene Symbol CCDC152   
Synonyms CH5400
Description coiled-coil domain containing 152
Transcript NM_001134848   
Expression
Putative miRNA Targets on CCDC152
3'UTR of CCDC152
(miRNA target sites are highlighted)
>CCDC152|NM_001134848|3'UTR
   1 GCTTAGCAGTAAATTCATTAGTTGGTATTTATTTAAAAGCAATCGAAAGTTTCACTTCTGTTTTCAATATATGCATACAG
  81 CCTACATAACAAACGAAGTCAGCTTTAAGGTTTTTATTGAATTTATTTGGACAAATCCGTACTGTATCCAATTCTGTACT
 161 GCATTCTTGCTTAATAGTATTAACCATAAAGGAGGTCAGGTTTATAGGGTTTGGTTTACCTATTAAACCATCATTGACTA
 241 TGGAAATACTTACTAAGCAATATAGAGACAGACAATATTATCTTTCCCCTTATATCTTTTAAGACAGCCACTCAAGTTTT
 321 AGAAGAGTATGATACAACATTAGAGAAAGAAAGATACAAAGGCTTTATTCATGTGTGATAGTAAAAATCAGGATGAGTCT
 401 TAGATATACAAAAGATAAATGGATATTTAAAATAGTTATATATGCTTTTTTAGCAAAATATTCACGTGTTAAGTATTTCT
 481 GGATCTTAAAATACAAAATCCACTTATTTTATTAGTTAAAAGTAGAAGATTGAAAAGACAAAGTAATATTGTTTTGAGAG
 561 ATAAGTAAAGAAAAAAATGGAAAGCATGTCTTTGTTGTTCTTCCTCCATTCTAAACTGCTAATTATCCAACAGAAACCCC
 641 TAGGTCATAGTTTACGTTTCTATTCTCATTAAAGCAAATAGAACACTGGAAAAAGAAAAAAAAAGACATATTAACCAAAA
 721 GCTGCAATCACCTTTCAGTTGCTCCATCATAAAAAATATGGTTTGAGTCAATATTTCTATGACATAAAATTTAAAATCTG
 801 GAAGCCAATTCAGTAGATTTCTCCATGTTTGCACAAATCTAATTTCTATTTTTGGTTCACTAATTTGGTAGTTTATAAAA
 881 ATGCTGGAAATGAAATTGTGTCTAGACTAAATTGGGGAGTATGTCCTATTTTAAATATTTAGTTTGAAGGTCATTCTCAC
 961 TTTTTTGCCTGATTCTTTCAGCGTCAACTGGCACTGGCTTCTGTGGGTATAAGCTGCTGACTTATTTGTCAGGCAGCTGG
1041 AGGCAAACGTCACTGACAAGATTCAGTTATGTTCTCCTCTGCCCGAAGTCCCTGTCAGCTACATAAAGATGGGAGGTTTT
1121 CTTTACACTGTCAGGTGATTGCAGACCCTGTTTTTTCAAATATCAGATGTCGACAATGGCAGCATCAGCTCCTAGGAGCC
1201 AACTCTGAATCTGTGGGCAATTTACAGAGTAATTGATTTATACATCTCTTTCGACAGAGCTTCTTTTGTAAATCTTGTAA
1281 ATCTTCACTTGCTGGCATATCTCGGTTCTCTGGGTGACCCTGCCTATGCTGACCCTTGTGCTTATGGTGGTGATGAAGGC
1361 CTGGAGGAGCAGGATGAGTAGGAGCATTTGGTGCTCCTGGTTGCTGATTCTCTGAAAGCTCACTGCTGCCAAGGTGCTGA
1441 TGTCCATGATTGTGATGATGCTCATGATGGTAATGAGGCGATGGAGTTTCAACTGTTTTATCCACAGTAGCCAAAGATAC
1521 ACGTTTACAAAAGTCTTCATCTTTGAGAGTCTGGAACAAATTTATAAATCACTTTTTAACAAGCTTATAGAGATAGGAAT
1601 AATGCGTGAAAAATGATTTGTAGAGCTAACATGTGAAATTCCAACTAGTTAATTAGAATCGAGCTGGCTTTGTATTATAT
1681 TAATGAGAAAGAGTCTGATGTTAGTCTCAACACCTAGACATTTTATTAAAGGCTTAAAAAGAAAGCCAAACCACTGTACT
1761 TATATTTGCAGAAGCAAATGAAGTAAACTGGCAAAAGGAACTTGGATTGCAGGAAAGTCAAAGTAATATCAAATCCTAAA
1841 TTCAGTTGATCTGGGCCGAGCATGGTGGCTCATGCCTGTAATCCCACCACTTTGGGTGGCCGAGGGGGGCAGATTACTTG
1921 GGCTCAGGAGTCGGAGACCAGCCTGGGCAACATGGCGAGATCCTGTCTCTGCAAAATATACAAAAATTAGCTGGGTGTGG
2001 TGTCAGATGCCTGTAGTCCCAGCTACTTGTGAGGCTGAGGTGGGAGGATCGTTTGAGCCTGCAAGATGGAGGTTGCAGTG
2081 AGCTCAGATGGTGCCACTGCACTCCAGCCTGGGTGACAGAGTCAGACCCTATCTCAAAAAAATAAAAAATAAATAAAAAA
2161 TCAGTTGAACTATATGGAAACTTCTGTACCTGTGTCAACGGTGCATCTTATCTAATACTATATGATACTGTAATCTAATA
2241 TTATCTCTGATAATTCAAAAATGCTAATAAACTCTGCTCAAATGTGTTAGTTTTTCATACTTCATCCTATGCCAGGAAAT
2321 GTTTTGAACTTCACCAAAGCTTTGCTAATGTCTCCCTACCATAAGGCTGTCAGCTGAAAATAGCAAATTACTGCCCGACT
2401 CCCATTGACCATAATATCCATTCCGCATGATCCTAGTTCTTTAATTTACTGGAAGTCTTTACTGTTTTGTGGTACCTACT
2481 AATCAGAGACTCAAAGCCTATAGATACAGAAATGTAACAGTAAATCTCAACCTAAGGCTAATTTGCAAATAAAATTACAA
2561 AATCAACTTAGAACCCAAAGACTCACTAAGTGATATGCTTTTGATGTTTTGAAGGTTTTAAAAGGTTATAAATTCCATTA
2641 AATTTTAGCATACAAC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' augcGGUCAGUUAU-----GGAACACu 5'
              || | | ||:     ||||||| 
Target 5' tgacCCTGCCTATGCTGACCCTTGTGc 3'
1315 - 1341 146.00 -13.60
2
miRNA  3' augcggUCAG---UUAUGGAACACu 5'
                ||||   | |:::||||| 
Target 5' actggaAGTCTTTACTGTTTTGTGg 3'
2448 - 2472 124.00 -12.80
3
miRNA  3' augcGGUCAGUUAUGGAACACu 5'
              |||| :|    |||||| 
Target 5' agtcCCAGCTA----CTTGTGa 3'
2015 - 2032 123.00 -12.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
783435 1396 ClinVar
COSN30114020 45 COSMIC
COSN24395872 46 COSMIC
COSN31572073 63 COSMIC
COSN30166261 96 COSMIC
COSN2106846 579 COSMIC
COSN31490946 629 COSMIC
COSN30497453 726 COSMIC
COSN30451925 802 COSMIC
COSN30107242 809 COSMIC
COSN30109376 821 COSMIC
COSN31559999 822 COSMIC
COSN31600224 822 COSMIC
COSN31550530 825 COSMIC
COSN30496941 832 COSMIC
COSN30488859 851 COSMIC
COSN30494988 851 COSMIC
COSN507432 855 COSMIC
COSN30124462 873 COSMIC
COSN30458122 893 COSMIC
COSN30458121 914 COSMIC
COSN20075312 921 COSMIC
COSN18729987 926 COSMIC
COSM8662718 947 COSMIC
COSM7690204 957 COSMIC
COSM1620339 963 COSMIC
COSM7901504 966 COSMIC
COSM4777539 968 COSMIC
COSM9441440 972 COSMIC
COSM4808985 977 COSMIC
COSM5598772 989 COSMIC
COSM5650199 1002 COSMIC
COSM8487505 1009 COSMIC
COSM5403556 1022 COSMIC
COSM6482832 1024 COSMIC
COSM7389321 1025 COSMIC
COSM9900418 1043 COSMIC
COSM1068366 1050 COSMIC
COSM1486789 1050 COSMIC
COSM4168091 1085 COSMIC
COSM4347939 1086 COSMIC
COSM8618860 1086 COSMIC
COSM5664524 1109 COSMIC
COSM9934082 1116 COSMIC
COSM8179977 1129 COSMIC
COSM8966152 1132 COSMIC
COSM6500497 1133 COSMIC
COSM5403557 1138 COSMIC
COSM3616697 1149 COSMIC
COSM8149118 1149 COSMIC
COSM5714227 1151 COSMIC
COSM9240408 1154 COSMIC
COSM5753095 1157 COSMIC
COSM3616698 1158 COSMIC
COSM8709515 1164 COSMIC
COSM3616699 1165 COSMIC
COSM1671625 1172 COSMIC
COSM3616700 1173 COSMIC
COSM4443027 1190 COSMIC
COSM5939458 1199 COSMIC
COSM7751616 1200 COSMIC
COSM9439025 1201 COSMIC
COSM3342529 1206 COSMIC
COSM7875255 1206 COSMIC
COSM9531073 1206 COSMIC
COSM7179203 1212 COSMIC
COSM1486790 1228 COSMIC
COSM7472571 1230 COSMIC
COSM5151973 1246 COSMIC
COSM9301887 1247 COSMIC
COSM3616701 1249 COSMIC
COSM7919916 1253 COSMIC
COSM6775161 1264 COSMIC
COSM8696859 1265 COSMIC
COSM6563348 1266 COSMIC
COSM5687070 1268 COSMIC
COSM7722205 1293 COSMIC
COSM1739071 1305 COSMIC
COSM7512953 1322 COSMIC
COSM8243908 1326 COSMIC
COSM7539327 1329 COSMIC
COSM9439780 1333 COSMIC
COSM9438684 1334 COSMIC
COSM738731 1340 COSMIC
COSM5792106 1341 COSMIC
COSM4186131 1358 COSMIC
COSM4159877 1386 COSMIC
COSM8859088 1411 COSMIC
COSM3994327 1431 COSMIC
COSM8347052 1440 COSMIC
COSM1068367 1444 COSMIC
COSM4141984 1444 COSMIC
COSM8332724 1447 COSMIC
COSM5650307 1451 COSMIC
COSM6775159 1471 COSMIC
COSM5538767 1478 COSMIC
COSM3855341 1480 COSMIC
COSM7800656 1480 COSMIC
COSM3920118 1481 COSMIC
COSM3616702 1484 COSMIC
COSM5657389 1502 COSMIC
COSM5582468 1503 COSMIC
COSM7541761 1506 COSMIC
COSM7885864 1508 COSMIC
COSM7251890 1512 COSMIC
COSM1068368 1523 COSMIC
COSM7841440 1524 COSMIC
COSM8863166 1535 COSMIC
COSM1247479 1537 COSMIC
COSM328567 1544 COSMIC
COSM8676665 1554 COSMIC
COSM1620340 1555 COSMIC
COSN30130466 1567 COSMIC
COSN28856868 1568 COSMIC
COSN24301252 1571 COSMIC
COSN31600694 1586 COSMIC
COSN28187485 1589 COSMIC
COSN30457219 1598 COSMIC
COSN30149734 1604 COSMIC
COSN30475853 1609 COSMIC
COSN30156896 1624 COSMIC
COSN30456230 1636 COSMIC
COSN14170636 1657 COSMIC
COSN30115349 1661 COSMIC
COSN2106848 1679 COSMIC
COSN31542272 1696 COSMIC
COSN23331030 1759 COSMIC
COSN2106849 1781 COSMIC
COSN27097335 2309 COSMIC
COSN2106850 2335 COSMIC
COSN20594744 2413 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1242624077 1 dbSNP
rs777047296 2 dbSNP
rs963035144 3 dbSNP
rs1323797416 7 dbSNP
rs1333241711 10 dbSNP
rs994526665 17 dbSNP
rs1429027010 18 dbSNP
rs1028732025 21 dbSNP
rs1459283044 22 dbSNP
rs1343439191 23 dbSNP
rs1230719463 26 dbSNP
rs1289597906 27 dbSNP
rs953120825 34 dbSNP
rs1233619999 35 dbSNP
rs987297621 35 dbSNP
rs1204327557 41 dbSNP
rs16872762 43 dbSNP
rs549756125 45 dbSNP
rs765747091 46 dbSNP
rs1247337315 47 dbSNP
rs1453150529 48 dbSNP
rs988462134 50 dbSNP
rs1053387410 66 dbSNP
rs895939670 69 dbSNP
rs1375135469 73 dbSNP
rs1298360691 76 dbSNP
rs1441290244 87 dbSNP
rs28919928 95 dbSNP
rs112996388 99 dbSNP
rs1272346494 100 dbSNP
rs946707673 104 dbSNP
rs535214645 111 dbSNP
rs1384489529 112 dbSNP
rs926688193 115 dbSNP
rs148724369 118 dbSNP
rs4987017 122 dbSNP
rs539007215 123 dbSNP
rs1409043350 139 dbSNP
rs141459744 140 dbSNP
rs1479896856 145 dbSNP
rs1248838326 149 dbSNP
rs1027637154 156 dbSNP
rs1374470089 171 dbSNP
rs201030711 171 dbSNP
rs1004422883 172 dbSNP
rs28919927 173 dbSNP
rs397729697 173 dbSNP
rs869118185 173 dbSNP
rs1290161456 174 dbSNP
rs113324887 176 dbSNP
rs983744001 186 dbSNP
rs768691205 187 dbSNP
rs754638777 191 dbSNP
rs1307332999 194 dbSNP
rs1222860471 201 dbSNP
rs966231121 203 dbSNP
rs1304763904 210 dbSNP
rs1405278413 214 dbSNP
rs974595765 225 dbSNP
rs1301183195 235 dbSNP
rs1455475340 236 dbSNP
rs921797753 241 dbSNP
rs10569610 247 dbSNP
rs777927657 247 dbSNP
rs1417565594 258 dbSNP
rs1039006011 264 dbSNP
rs1200634508 269 dbSNP
rs1297389150 286 dbSNP
rs1480294330 290 dbSNP
rs898776070 292 dbSNP
rs994474275 293 dbSNP
rs1260805534 294 dbSNP
rs577515922 306 dbSNP
rs368371360 309 dbSNP
rs1284780793 320 dbSNP
rs935008624 325 dbSNP
rs556516630 330 dbSNP
rs574939995 331 dbSNP
rs1344633241 344 dbSNP
rs1053743082 347 dbSNP
rs1316126348 379 dbSNP
rs1383866273 391 dbSNP
rs1385500746 403 dbSNP
rs1288399666 404 dbSNP
rs1009070618 409 dbSNP
rs1451665408 415 dbSNP
rs767897586 417 dbSNP
rs956728574 423 dbSNP
rs988021551 424 dbSNP
rs1469658316 439 dbSNP
rs1427652962 444 dbSNP
rs542362637 450 dbSNP
rs1429659826 452 dbSNP
rs896069197 452 dbSNP
rs1261583218 457 dbSNP
rs950381261 460 dbSNP
rs544831994 466 dbSNP
rs560522373 467 dbSNP
rs1203894869 480 dbSNP
rs994898593 483 dbSNP
rs527692844 486 dbSNP
rs180804239 493 dbSNP
rs1192020367 504 dbSNP
rs1294748328 504 dbSNP
rs1326982123 504 dbSNP
rs1385062684 512 dbSNP
rs1337403004 514 dbSNP
rs980701550 518 dbSNP
rs1004887431 523 dbSNP
rs183667353 531 dbSNP
rs1462795855 537 dbSNP
rs965977025 538 dbSNP
rs1168949280 546 dbSNP
rs939403250 555 dbSNP
rs1056946481 561 dbSNP
rs1183598056 562 dbSNP
rs1028760392 563 dbSNP
rs1253587125 572 dbSNP
rs531534661 576 dbSNP
rs967869839 579 dbSNP
rs766866325 581 dbSNP
rs556850971 582 dbSNP
rs1361421641 586 dbSNP
rs1315856245 590 dbSNP
rs550031817 591 dbSNP
rs1331096446 594 dbSNP
rs1392403479 604 dbSNP
rs991828041 609 dbSNP
rs757899849 617 dbSNP
rs917600332 619 dbSNP
rs950310048 620 dbSNP
rs1297829417 621 dbSNP
rs763652691 624 dbSNP
rs1386364513 625 dbSNP
rs1044685849 639 dbSNP
rs1163694189 645 dbSNP
rs1338629308 650 dbSNP
rs188374443 656 dbSNP
rs927415444 657 dbSNP
rs529038749 663 dbSNP
rs1366398518 672 dbSNP
rs1183513882 680 dbSNP
rs1249559627 683 dbSNP
rs1283953302 685 dbSNP
rs547100076 687 dbSNP
rs1312172691 690 dbSNP
rs1049135349 696 dbSNP
rs1202707395 696 dbSNP
rs930806262 696 dbSNP
rs575256195 703 dbSNP
rs1281549965 705 dbSNP
rs869103592 706 dbSNP
rs1005406926 707 dbSNP
rs751291278 708 dbSNP
rs565477894 709 dbSNP
rs1262936294 711 dbSNP
rs1486390813 712 dbSNP
rs1216258998 734 dbSNP
rs539146481 742 dbSNP
rs756906356 744 dbSNP
rs1050054458 745 dbSNP
rs1040357468 756 dbSNP
rs888775816 760 dbSNP
rs550992460 762 dbSNP
rs1490723701 766 dbSNP
rs1008588544 768 dbSNP
rs1199575539 770 dbSNP
rs1019096911 771 dbSNP
rs1028876379 772 dbSNP
rs892229509 775 dbSNP
rs1427947957 779 dbSNP
rs376550561 780 dbSNP
rs1221637953 781 dbSNP
rs1161178412 782 dbSNP
rs1364248455 802 dbSNP
rs1000650294 808 dbSNP
rs781145784 811 dbSNP
rs745704566 814 dbSNP
rs146344231 815 dbSNP
rs538173084 819 dbSNP
rs556786930 822 dbSNP
rs755929493 824 dbSNP
rs956472242 826 dbSNP
rs1303878559 839 dbSNP
rs1225782978 840 dbSNP
rs6413428 842 dbSNP
rs917569713 847 dbSNP
rs1434946139 849 dbSNP
rs1412984228 856 dbSNP
rs1328665319 861 dbSNP
rs1385650231 866 dbSNP
rs1319739173 867 dbSNP
rs1309803738 869 dbSNP
rs969474544 871 dbSNP
rs1156500172 878 dbSNP
rs560753634 883 dbSNP
rs753136280 892 dbSNP
rs200706035 897 dbSNP
rs1393234589 901 dbSNP
rs371582737 906 dbSNP
rs375257526 908 dbSNP
rs1366268775 910 dbSNP
rs908590224 911 dbSNP
rs779782895 913 dbSNP
rs368334009 924 dbSNP
rs7579 926 dbSNP
rs1455998398 927 dbSNP
rs974197344 933 dbSNP
rs779003528 944 dbSNP
rs755297857 945 dbSNP
rs920098924 945 dbSNP
rs1366564317 946 dbSNP
rs908059003 949 dbSNP
rs376639171 951 dbSNP
rs940762037 953 dbSNP
rs772301128 961 dbSNP
rs1262940622 966 dbSNP
rs1245571799 968 dbSNP
rs1267486216 969 dbSNP
rs1348743808 970 dbSNP
rs1206600800 971 dbSNP
rs1267181031 972 dbSNP
rs1465175216 973 dbSNP
rs1210573692 976 dbSNP
rs777978802 977 dbSNP
rs564357309 978 dbSNP
rs1294189864 982 dbSNP
rs369047140 983 dbSNP
rs28919926 984 dbSNP
rs376470871 988 dbSNP
rs1157951014 994 dbSNP
rs201579106 996 dbSNP
rs1459134267 1003 dbSNP
rs760986023 1005 dbSNP
rs766743459 1008 dbSNP
rs777031512 1011 dbSNP
rs767050970 1014 dbSNP
rs749942093 1015 dbSNP
rs1348860342 1016 dbSNP
rs760305581 1017 dbSNP
rs1412525019 1020 dbSNP
rs755423151 1022 dbSNP
rs781538783 1022 dbSNP
rs944343668 1025 dbSNP
rs752846115 1026 dbSNP
rs1254201194 1028 dbSNP
rs766072096 1029 dbSNP
rs753368511 1032 dbSNP
rs754855834 1033 dbSNP
rs778801587 1038 dbSNP
rs752732056 1039 dbSNP
rs1412209496 1040 dbSNP
rs17857312 1045 dbSNP
rs760084196 1049 dbSNP
rs778055332 1050 dbSNP
rs373692600 1058 dbSNP
rs747124068 1063 dbSNP
rs757217484 1069 dbSNP
rs781508107 1071 dbSNP
rs1368849788 1075 dbSNP
rs1409256721 1081 dbSNP
rs865968035 1083 dbSNP
rs199555710 1085 dbSNP
rs770189876 1086 dbSNP
rs775798520 1088 dbSNP
rs370941266 1089 dbSNP
rs1022036425 1095 dbSNP
rs1311386285 1096 dbSNP
rs1233951417 1101 dbSNP
rs1282353306 1104 dbSNP
rs769140982 1109 dbSNP
rs561977376 1112 dbSNP
rs760241140 1114 dbSNP
rs756213126 1117 dbSNP
rs765771253 1121 dbSNP
rs777778844 1122 dbSNP
rs1267180523 1125 dbSNP
rs1025154051 1126 dbSNP
rs776369032 1135 dbSNP
rs28919925 1146 dbSNP
rs765165734 1149 dbSNP
rs1429215856 1150 dbSNP
rs1169239893 1151 dbSNP
rs377441682 1153 dbSNP
rs752538090 1163 dbSNP
rs1301870241 1165 dbSNP
rs758207933 1166 dbSNP
rs980431185 1168 dbSNP
rs764096154 1172 dbSNP
rs751411404 1173 dbSNP
rs1387102977 1178 dbSNP
rs757380639 1185 dbSNP
rs781105623 1195 dbSNP
rs746126307 1196 dbSNP
rs756321498 1201 dbSNP
rs202040224 1202 dbSNP
rs756812349 1203 dbSNP
rs1218998793 1204 dbSNP
rs985058941 1209 dbSNP
rs28919924 1210 dbSNP
rs767138424 1214 dbSNP
rs1413427387 1218 dbSNP
rs749669211 1221 dbSNP
rs1368691480 1223 dbSNP
rs749344352 1227 dbSNP
rs768946473 1228 dbSNP
rs960667987 1229 dbSNP
rs1233822781 1230 dbSNP
rs373829928 1230 dbSNP
rs774956785 1234 dbSNP
rs1449323933 1238 dbSNP
rs770939280 1240 dbSNP
rs748559229 1243 dbSNP
rs770524114 1245 dbSNP
rs570817380 1246 dbSNP
rs867342337 1247 dbSNP
rs28919923 1253 dbSNP
rs764971326 1254 dbSNP
rs775215021 1255 dbSNP
rs762871031 1260 dbSNP
rs1362945063 1267 dbSNP
rs1434364948 1282 dbSNP
rs976152154 1287 dbSNP
rs1298222954 1294 dbSNP
rs763747257 1296 dbSNP
rs146125471 1297 dbSNP
rs757107451 1298 dbSNP
rs767699870 1302 dbSNP
rs750486327 1304 dbSNP
rs756131447 1305 dbSNP
rs779849794 1306 dbSNP
rs753749902 1310 dbSNP
rs755396959 1315 dbSNP
rs370590668 1317 dbSNP
rs932793935 1318 dbSNP
rs373890378 1319 dbSNP
rs1480619948 1322 dbSNP
rs780908859 1324 dbSNP
rs745374620 1327 dbSNP
rs1421141482 1328 dbSNP
rs754842351 1330 dbSNP
rs1425709254 1331 dbSNP
rs778708590 1344 dbSNP
rs767112818 1346 dbSNP
rs1386256153 1347 dbSNP
rs769387666 1349 dbSNP
rs1471798319 1351 dbSNP
rs985640463 1359 dbSNP
rs775303625 1361 dbSNP
rs1445198975 1362 dbSNP
rs912783764 1365 dbSNP
rs1258743662 1367 dbSNP
rs1223869892 1371 dbSNP
rs762672238 1374 dbSNP
rs569570677 1377 dbSNP
rs1286049173 1382 dbSNP
rs3877899 1386 dbSNP
rs748295200 1388 dbSNP
rs772109324 1389 dbSNP
rs767367145 1390 dbSNP
rs372339051 1395 dbSNP
rs28919922 1396 dbSNP
rs1218696445 1400 dbSNP
rs945085106 1404 dbSNP
rs766400584 1405 dbSNP
rs1318399666 1407 dbSNP
rs1486685768 1411 dbSNP
rs754112505 1412 dbSNP
rs1411464826 1413 dbSNP
rs1472156645 1416 dbSNP
rs1451391890 1420 dbSNP
rs1166843358 1422 dbSNP
rs1227625079 1429 dbSNP
rs755124364 1435 dbSNP
rs1348393909 1437 dbSNP
rs139954673 1438 dbSNP
rs1412755586 1440 dbSNP
rs1043440072 1442 dbSNP
rs747209835 1447 dbSNP
rs752992303 1448 dbSNP
rs771234969 1449 dbSNP
rs758733544 1453 dbSNP
rs1305829784 1458 dbSNP
rs778453889 1462 dbSNP
rs372244584 1463 dbSNP
rs747466362 1464 dbSNP
rs376679293 1466 dbSNP
rs903638933 1468 dbSNP
rs1281568909 1469 dbSNP
rs769473668 1474 dbSNP
rs779679796 1478 dbSNP
rs576501614 1479 dbSNP
rs1001961792 1480 dbSNP
rs72563758 1481 dbSNP
rs896352916 1483 dbSNP
rs773995068 1484 dbSNP
rs761519480 1487 dbSNP
rs771862758 1494 dbSNP
rs773156029 1496 dbSNP
rs1265850584 1499 dbSNP
rs1476906414 1500 dbSNP
rs760584141 1502 dbSNP
rs766490728 1503 dbSNP
rs753914899 1505 dbSNP
rs759863312 1506 dbSNP
rs1369563741 1508 dbSNP
rs765393848 1509 dbSNP
rs1024848914 1512 dbSNP
rs752921378 1515 dbSNP
rs1329758821 1519 dbSNP
rs1436164321 1522 dbSNP
rs758709326 1523 dbSNP
rs369054600 1524 dbSNP
rs17851351 1527 dbSNP
rs752147663 1528 dbSNP
rs554434415 1531 dbSNP
rs572661051 1538 dbSNP
rs748759793 1546 dbSNP
rs1223855134 1550 dbSNP
rs1287956482 1553 dbSNP
rs754442007 1555 dbSNP
rs778463136 1556 dbSNP
rs762181639 1558 dbSNP
rs1384051023 1565 dbSNP
rs995530984 1567 dbSNP
rs771904801 1568 dbSNP
rs772959843 1572 dbSNP
rs745733446 1573 dbSNP
rs1186589917 1578 dbSNP
rs771705142 1584 dbSNP
rs747019440 1586 dbSNP
rs770845959 1588 dbSNP
rs776576159 1590 dbSNP
rs759541323 1595 dbSNP
rs376734713 1600 dbSNP
rs763198729 1601 dbSNP
rs1235489477 1604 dbSNP
rs539953399 1606 dbSNP
rs181104358 1607 dbSNP
rs1429561871 1615 dbSNP
rs954129439 1620 dbSNP
rs1424527413 1621 dbSNP
rs1187334124 1623 dbSNP
rs1463293298 1627 dbSNP
rs28919921 1631 dbSNP
rs1200873025 1649 dbSNP
rs1482797166 1653 dbSNP
rs1254246179 1657 dbSNP
rs985588212 1661 dbSNP
rs1229521232 1665 dbSNP
rs912739300 1666 dbSNP
rs1307943263 1672 dbSNP
rs965964513 1678 dbSNP
rs866185808 1687 dbSNP
rs1168569851 1707 dbSNP
rs28919920 1709 dbSNP
rs913501045 1720 dbSNP
rs1226241259 1721 dbSNP
rs1385327386 1728 dbSNP
rs945028730 1730 dbSNP
rs1395881699 1739 dbSNP
rs1415528266 1746 dbSNP
rs1400524438 1757 dbSNP
rs1333973575 1761 dbSNP
rs548487036 1763 dbSNP
rs1432533714 1776 dbSNP
rs1043385044 1784 dbSNP
rs576370407 1790 dbSNP
rs1339373609 1795 dbSNP
rs1167459754 1796 dbSNP
rs149858429 1852 dbSNP
rs1055330997 1858 dbSNP
rs896311049 1859 dbSNP
rs1253831549 1861 dbSNP
rs561932571 1866 dbSNP
rs1276313561 1869 dbSNP
rs1273805048 1874 dbSNP
rs932052499 1877 dbSNP
rs1361680925 1887 dbSNP
rs1284789193 1890 dbSNP
rs28919919 1902 dbSNP
rs540913973 1903 dbSNP
rs1264205762 1904 dbSNP
rs897087913 1905 dbSNP
rs1052324191 1907 dbSNP
rs1366305253 1909 dbSNP
rs1183789004 1921 dbSNP
rs1191662348 1924 dbSNP
rs1472790485 1927 dbSNP
rs1251079607 1928 dbSNP
rs548541144 1933 dbSNP
rs773492567 1934 dbSNP
rs1026991193 1937 dbSNP
rs1490804168 1938 dbSNP
rs1290709360 1952 dbSNP
rs954077658 1953 dbSNP
rs1209274931 1957 dbSNP
rs1006969736 1958 dbSNP
rs1478683893 1966 dbSNP
rs1229457664 1967 dbSNP
rs1172494615 1968 dbSNP
rs1286773841 1984 dbSNP
rs949364467 1993 dbSNP
rs1423613652 1995 dbSNP
rs1402815295 1999 dbSNP
rs1332130014 2004 dbSNP
rs1323676160 2005 dbSNP
rs1404207590 2006 dbSNP
rs1020157808 2018 dbSNP
rs1046646117 2019 dbSNP
rs867325124 2020 dbSNP
rs868344329 2021 dbSNP
rs770479602 2022 dbSNP
rs1457385091 2023 dbSNP
rs1410977267 2027 dbSNP
rs1156625768 2028 dbSNP
rs965558218 2030 dbSNP
rs1359555745 2033 dbSNP
rs1001924939 2034 dbSNP
rs559140248 2038 dbSNP
rs913453942 2044 dbSNP
rs778953627 2046 dbSNP
rs1026742610 2051 dbSNP
rs796574213 2052 dbSNP
rs761099603 2056 dbSNP
rs532935234 2057 dbSNP
rs979026436 2060 dbSNP
rs230816 2067 dbSNP
rs1015292524 2068 dbSNP
rs1435220784 2072 dbSNP
rs28919918 2074 dbSNP
rs1285020713 2075 dbSNP
rs976382874 2082 dbSNP
rs1030895834 2089 dbSNP
rs953562017 2103 dbSNP
rs1214724160 2120 dbSNP
rs986146881 2127 dbSNP
rs1425858123 2129 dbSNP
rs1054878954 2142 dbSNP
rs925374552 2155 dbSNP
rs917681979 2165 dbSNP
rs530509840 2174 dbSNP
rs1189239917 2193 dbSNP
rs767027461 2196 dbSNP
rs988540069 2199 dbSNP
rs549010038 2200 dbSNP
rs28919917 2201 dbSNP
rs931226929 2212 dbSNP
rs1046322418 2223 dbSNP
rs1217996471 2225 dbSNP
rs926409883 2229 dbSNP
rs1299214664 2230 dbSNP
rs1471415108 2231 dbSNP
rs752335893 2234 dbSNP
rs1048295817 2243 dbSNP
rs1380070399 2244 dbSNP
rs1318106951 2251 dbSNP
rs1450035481 2252 dbSNP
rs529647738 2255 dbSNP
rs889790827 2257 dbSNP
rs1007328557 2259 dbSNP
rs1019685173 2264 dbSNP
rs900857958 2268 dbSNP
rs1372283342 2270 dbSNP
rs1390918056 2280 dbSNP
rs1404270467 2281 dbSNP
rs1448914135 2281 dbSNP
rs186721153 2282 dbSNP
rs901264001 2287 dbSNP
rs1030550037 2290 dbSNP
rs61110072 2291 dbSNP
rs1010377477 2292 dbSNP
rs1447390409 2300 dbSNP
rs1308350425 2302 dbSNP
rs373620490 2305 dbSNP
rs1440098236 2308 dbSNP
rs1275949339 2311 dbSNP
rs1205325282 2323 dbSNP
rs1340837455 2326 dbSNP
rs1020410825 2329 dbSNP
rs1379380787 2350 dbSNP
rs149042544 2355 dbSNP
rs958102657 2363 dbSNP
rs1352307626 2375 dbSNP
rs1308544984 2378 dbSNP
rs988267195 2394 dbSNP
rs978974241 2397 dbSNP
rs1034602083 2398 dbSNP
rs959051429 2410 dbSNP
rs1413306534 2414 dbSNP
rs990921026 2419 dbSNP
rs1180529289 2421 dbSNP
rs917651672 2425 dbSNP
rs949161514 2426 dbSNP
rs972559490 2427 dbSNP
rs28919916 2428 dbSNP
rs931174583 2431 dbSNP
rs1271885977 2453 dbSNP
rs1223075240 2469 dbSNP
rs1440121139 2471 dbSNP
rs1199806534 2474 dbSNP
rs1048325152 2475 dbSNP
rs1226452107 2476 dbSNP
rs937944028 2488 dbSNP
rs766090267 2489 dbSNP
rs1348515389 2491 dbSNP
rs1048243015 2493 dbSNP
rs889738593 2494 dbSNP
rs1437256552 2498 dbSNP
rs942690966 2499 dbSNP
rs1238039663 2501 dbSNP
rs1413177054 2524 dbSNP
rs1041458933 2526 dbSNP
rs1471913934 2527 dbSNP
rs1270052939 2531 dbSNP
rs1438224530 2535 dbSNP
rs1185764655 2539 dbSNP
rs901220755 2550 dbSNP
rs939740113 2562 dbSNP
rs1010746629 2567 dbSNP
rs1245834163 2581 dbSNP
rs1218949776 2587 dbSNP
rs796922624 2592 dbSNP
rs751537494 2597 dbSNP
rs900803011 2603 dbSNP
rs1268566608 2606 dbSNP
rs1020361679 2609 dbSNP
rs904698503 2610 dbSNP
rs558060758 2615 dbSNP
rs1303302217 2616 dbSNP
rs753570555 2626 dbSNP
rs1367004569 2630 dbSNP
rs570178922 2631 dbSNP
rs997865586 2640 dbSNP
rs1437574078 2652 dbSNP
rs1389601647 2655 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000361970.5 | 3UTR | UUGUGAGGCUGAGGUGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
83 hsa-miR-4457 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT098032 SOBP sine oculis binding protein homolog 2 2
MIRT202580 PCMTD2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 2 6
MIRT247137 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT349266 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT363756 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2 2
MIRT443586 FAM84B family with sequence similarity 84 member B 2 2
MIRT452333 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 2
MIRT453864 ZBTB40 zinc finger and BTB domain containing 40 2 4
MIRT471486 PDE4D phosphodiesterase 4D 2 4
MIRT476290 GMFB glia maturation factor beta 2 8
MIRT479897 CCDC117 coiled-coil domain containing 117 2 4
MIRT484251 ANK1 ankyrin 1 2 2
MIRT491473 TMEM214 transmembrane protein 214 2 2
MIRT493804 GAN gigaxonin 2 6
MIRT499252 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT502271 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 4
MIRT504651 RPL9 ribosomal protein L9 2 6
MIRT505211 UBN2 ubinuclein 2 2 8
MIRT508952 SNRPB small nuclear ribonucleoprotein polypeptides B and B1 2 4
MIRT512691 POP1 POP1 homolog, ribonuclease P/MRP subunit 2 2
MIRT513320 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT513870 HOXA5 homeobox A5 2 2
MIRT517342 ZNF529 zinc finger protein 529 2 4
MIRT518947 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT520867 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT528325 GIGYF2 GRB10 interacting GYF protein 2 2 2
MIRT531990 SLCO1B3 solute carrier organic anion transporter family member 1B3 2 2
MIRT533298 USP46 ubiquitin specific peptidase 46 2 2
MIRT545257 TRIM36 tripartite motif containing 36 2 4
MIRT547038 POGZ pogo transposable element derived with ZNF domain 2 2
MIRT556103 MOAP1 modulator of apoptosis 1 2 2
MIRT558321 DR1 down-regulator of transcription 1 2 2
MIRT558521 CSRNP3 cysteine and serine rich nuclear protein 3 2 2
MIRT560906 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT568448 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT570586 OTUD7B OTU deubiquitinase 7B 2 2
MIRT572799 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT573863 C9orf78 chromosome 9 open reading frame 78 2 2
MIRT575058 P2ry1 purinergic receptor P2Y, G-protein coupled 1 2 5
MIRT609931 SLC38A1 solute carrier family 38 member 1 2 4
MIRT610836 ZNF585A zinc finger protein 585A 2 4
MIRT611474 P2RY1 purinergic receptor P2Y1 2 7
MIRT613569 YY2 YY2 transcription factor 2 2
MIRT618626 GREB1 growth regulation by estrogen in breast cancer 1 2 2
MIRT620606 SAP30 Sin3A associated protein 30 2 2
MIRT621017 CLSTN3 calsyntenin 3 2 4
MIRT635314 FAM179A TOG array regulator of axonemal microtubules 2 2 2
MIRT635919 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT640598 TM9SF4 transmembrane 9 superfamily member 4 2 2
MIRT641784 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta 2 4
MIRT644067 IQCE IQ motif containing E 2 2
MIRT648288 TRAPPC2L trafficking protein particle complex 2 like 2 2
MIRT658085 FOXR2 forkhead box R2 2 2
MIRT659077 DEPTOR DEP domain containing MTOR interacting protein 2 2
MIRT665307 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT665975 SYTL4 synaptotagmin like 4 2 2
MIRT666302 SLC25A25 solute carrier family 25 member 25 2 2
MIRT674906 RASSF9 Ras association domain family member 9 2 2
MIRT680086 THAP1 THAP domain containing 1 2 2
MIRT681488 DIP2A disco interacting protein 2 homolog A 2 2
MIRT691244 DFNB59 pejvakin 2 2
MIRT692362 AGTRAP angiotensin II receptor associated protein 2 2
MIRT693035 MB21D1 Mab-21 domain containing 1 2 2
MIRT693837 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT694479 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT696070 ZNF264 zinc finger protein 264 2 2
MIRT696578 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696760 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 2
MIRT697307 ZNF652 zinc finger protein 652 2 2
MIRT700152 RNF115 ring finger protein 115 2 2
MIRT701056 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT701198 OTUD3 OTU deubiquitinase 3 2 2
MIRT701335 NSD1 nuclear receptor binding SET domain protein 1 2 2
MIRT702656 ITGA3 integrin subunit alpha 3 2 2
MIRT703618 FBXO45 F-box protein 45 2 2
MIRT704673 CHTOP chromatin target of PRMT1 2 2
MIRT708894 ZNF780A zinc finger protein 780A 2 2
MIRT711620 DGKH diacylglycerol kinase eta 2 2
MIRT713745 TMEM81 transmembrane protein 81 2 2
MIRT719712 CD101 CD101 molecule 2 2
MIRT720294 DLGAP3 DLG associated protein 3 2 2
MIRT722606 CCDC152 coiled-coil domain containing 152 2 2
MIRT724566 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4457 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4457 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-4457 Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-4457 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

Error report submission