pre-miRNA Information
pre-miRNA hsa-mir-1301   
Genomic Coordinates chr2: 25328640 - 25328721
Synonyms MIRN1301, hsa-mir-1301, MIR1301
Description Homo sapiens miR-1301 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1301-3p
Sequence 48| UUGCAGCUGCCUGGGAGUGACUUC |71
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 5 2 - 25328670 26449202, 27298257, 28411194, 28550310, 28855684, 29267965, 29950133, 29165639, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs775188648 6 dbSNP
rs1022364375 11 dbSNP
rs938368115 12 dbSNP
rs771728471 15 dbSNP
rs778709428 19 dbSNP
rs1358947891 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SLC25A26   
Synonyms COXPD28, SAMC
Description solute carrier family 25 member 26
Transcript NM_001164796   
Other Transcripts NM_173471   
Expression
Putative miRNA Targets on SLC25A26
3'UTR of SLC25A26
(miRNA target sites are highlighted)
>SLC25A26|NM_001164796|3'UTR
   1 AGCAGAGACAAGCCTCACCTCCACTTCTGTCAAGAGAGGGGCCTGCAGTGCAAACCCTCTTCCGCTGAGCAGCTGTCTGA
  81 ACTATAGGCCCCAGTGCTGAAGACCAGTTGTGCTAAGATACCGGCATGGAGATTGTGCCATCCGTGGTATAGGCTGGCTG
 161 GTATGAAGTCATTGGCCTGTATGCCAGAGAGCTAAGAGAAGAAAACGGGGTCTGTGGCGGTACTCTGAACAATTTCCTCA
 241 GAACCTCTTAATAAATAAGTTTGGTAATGCTGAGGCCAGGCCTTTTAGAGCTTTCATTTGATCTGTATCTGATCTTTCAT
 321 TTCCTGCCACCTGATGGTGGATTCAGCAGAAGGCAAGATGGTTATAATTCTAAAAGAATAGCTTGTTTGTTTGTTTGGGA
 401 AAAGGAGACTTGGGGAAGAGTTGTGTATGTGGGTGTTTCTCCCCCTAGTTAATTCCTGTTGTGTAAGGGTAGGCTTTGTT
 481 GAAAAAGAAAGAAAGATTGAACTACAGGTGCATAGCAAGCACTCTTTCTGGGTAACTAGGCTGCTGGTTTTAATTACCCT
 561 CAGATTTCACCCATAAAAACGCACAATTGTATTATTTTACAGAGATGTGTCCAGCGCCCCCTGTGGTGTGTGAGAGAAAG
 641 CAGCTGCAACTCAAGTGACTAGGTGGGCCCAGCTGGCTTCGTGCAGGAGGGCACGGTGGGTGAGCCATTCTCGCCATTCT
 721 CATGTCAGACTGAAAGGAGGGCCTGGGCCAGCTTTGAAAAGGCAGGATGAAATGGAAAGGTCACCACACTTAGGGATTTT
 801 AGACCTTGACTAACAAGCTCCAGGTGTAGAAAAATTCAAAACAAAATGTCAGGAATCTAGCAGTGTTGTCTGCCCTGGAG
 881 CAAACAAACAGTATGTGATTTTGCTTCGCCTATTTTTTTTTTCTTTTTTGGGGGAAGATAATTAAAGGCAGAATGACTGC
 961 GTTTGTAAAAGAAGGACCACCAACTATACTGACATTTATAAATGAACCTTTATTAAAGACACTTCAATGCCATTTGTTAG
1041 ACACTTCAATATTTTACATGGTTTTCAATGTACACTGTACCAAAATTTCTATAAATAAATAACTTTGTACATAAAAGTAA
1121 AAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuucagugagggUCCGUCGACGUu 5'
                      | ||||||||| 
Target 5' gtgtgtgagagaAAGCAGCTGCAa 3'
626 - 649 152.00 -16.40
2
miRNA  3' cuucaGUGAGGGU--C-CGUCGACGuu 5'
               | ||:||:  | |||||||:  
Target 5' aaaccCTCTTCCGCTGAGCAGCTGTct 3'
52 - 78 125.00 -17.50
3
miRNA  3' cuUCAGUGAG---GGUCCG-----UCGACGuu 5'
            || |||||   |::||:     :|||||  
Target 5' caAG-CACTCTTTCTGGGTAACTAGGCTGCtg 3'
516 - 546 121.00 -19.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31497147 49 COSMIC
COSN30492074 60 COSMIC
COSN31589488 74 COSMIC
COSN6773783 120 COSMIC
COSN30232936 194 COSMIC
COSN32055822 220 COSMIC
COSN20098594 398 COSMIC
COSN15662792 430 COSMIC
COSN19025316 446 COSMIC
COSN26563856 496 COSMIC
COSN26556206 531 COSMIC
COSN25459492 695 COSMIC
COSN27438243 923 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs116677829 4 dbSNP
rs1296031682 6 dbSNP
rs1395398306 14 dbSNP
rs747147170 15 dbSNP
rs778428660 18 dbSNP
rs1282786293 19 dbSNP
rs1034485733 20 dbSNP
rs573153748 23 dbSNP
rs775238270 27 dbSNP
rs762789141 28 dbSNP
rs1173189242 32 dbSNP
rs745374843 33 dbSNP
rs768570648 33 dbSNP
rs371552987 34 dbSNP
rs774223340 35 dbSNP
rs375972702 37 dbSNP
rs749972648 39 dbSNP
rs545691976 40 dbSNP
rs1255425328 43 dbSNP
rs1485401866 46 dbSNP
rs1187051235 47 dbSNP
rs766182839 48 dbSNP
rs754240689 49 dbSNP
rs755459735 51 dbSNP
rs1046844 52 dbSNP
rs994874234 53 dbSNP
rs1480852626 56 dbSNP
rs181578442 57 dbSNP
rs547875489 61 dbSNP
rs544363910 64 dbSNP
rs1204856630 65 dbSNP
rs1347410237 72 dbSNP
rs185681909 73 dbSNP
rs530241404 74 dbSNP
rs950657439 83 dbSNP
rs1485084335 93 dbSNP
rs1300309107 94 dbSNP
rs983555844 97 dbSNP
rs1035488934 103 dbSNP
rs1177705722 105 dbSNP
rs1470670910 106 dbSNP
rs959930046 108 dbSNP
rs1025905366 120 dbSNP
rs1184447069 121 dbSNP
rs1421243943 122 dbSNP
rs766650566 123 dbSNP
rs770382764 124 dbSNP
rs1460694655 130 dbSNP
rs1243691035 134 dbSNP
rs984158690 142 dbSNP
rs549156156 144 dbSNP
rs911247171 145 dbSNP
rs377316444 151 dbSNP
rs1426587303 155 dbSNP
rs1259087987 157 dbSNP
rs978608036 164 dbSNP
rs1317817567 165 dbSNP
rs1309404526 167 dbSNP
rs1244247998 178 dbSNP
rs1470949263 189 dbSNP
rs1337291928 190 dbSNP
rs1337993347 195 dbSNP
rs1455001543 196 dbSNP
rs1383414493 197 dbSNP
rs565894039 204 dbSNP
rs754288439 207 dbSNP
rs964084367 208 dbSNP
rs1428424808 210 dbSNP
rs976840536 213 dbSNP
rs1443783974 216 dbSNP
rs1362934279 219 dbSNP
rs1046867 220 dbSNP
rs200676135 222 dbSNP
rs945904813 228 dbSNP
rs1260952326 231 dbSNP
rs765500603 237 dbSNP
rs925905351 240 dbSNP
rs944931570 243 dbSNP
rs1039604071 248 dbSNP
rs1316234231 249 dbSNP
rs1247688003 254 dbSNP
rs145995378 257 dbSNP
rs1325277728 262 dbSNP
rs1445734325 269 dbSNP
rs935640791 275 dbSNP
rs1382311998 279 dbSNP
rs1055445548 283 dbSNP
rs1242991156 285 dbSNP
rs1423554438 291 dbSNP
rs190724988 292 dbSNP
rs1004876600 299 dbSNP
rs1474295814 306 dbSNP
rs752783346 306 dbSNP
rs1198222890 307 dbSNP
rs1193722548 308 dbSNP
rs1045544182 309 dbSNP
rs906658883 310 dbSNP
rs1220319668 313 dbSNP
rs961075494 315 dbSNP
rs1481116392 319 dbSNP
rs571132506 320 dbSNP
rs1212067160 324 dbSNP
rs1337791340 330 dbSNP
rs994362050 334 dbSNP
rs1228747649 339 dbSNP
rs182030212 340 dbSNP
rs556696084 341 dbSNP
rs1407196854 345 dbSNP
rs1280869944 353 dbSNP
rs1023222198 355 dbSNP
rs1345812385 358 dbSNP
rs566994250 359 dbSNP
rs1408000148 365 dbSNP
rs1395454012 381 dbSNP
rs1161022632 382 dbSNP
rs201875088 383 dbSNP
rs3054003 383 dbSNP
rs3835131 383 dbSNP
rs67415953 383 dbSNP
rs764544078 383 dbSNP
rs765616264 383 dbSNP
rs952976240 386 dbSNP
rs1480143786 387 dbSNP
rs386396914 391 dbSNP
rs1269886844 395 dbSNP
rs1404624084 396 dbSNP
rs955728082 399 dbSNP
rs1272685761 401 dbSNP
rs1301498997 403 dbSNP
rs1347511148 405 dbSNP
rs1320701249 407 dbSNP
rs1405659036 407 dbSNP
rs1278982941 418 dbSNP
rs1349168946 421 dbSNP
rs1006248072 423 dbSNP
rs1261798180 426 dbSNP
rs758571503 427 dbSNP
rs1323534218 429 dbSNP
rs988879796 432 dbSNP
rs778046956 436 dbSNP
rs976765455 440 dbSNP
rs1392915835 441 dbSNP
rs138679358 444 dbSNP
rs1038743436 447 dbSNP
rs763343967 450 dbSNP
rs1430033500 453 dbSNP
rs1174561694 456 dbSNP
rs967586149 457 dbSNP
rs751509608 462 dbSNP
rs186196032 464 dbSNP
rs1490724985 467 dbSNP
rs190764146 468 dbSNP
rs1183055663 474 dbSNP
rs1049371052 484 dbSNP
rs374989598 484 dbSNP
rs775523033 484 dbSNP
rs529623414 488 dbSNP
rs1468596306 490 dbSNP
rs1055753183 492 dbSNP
rs34229713 493 dbSNP
rs182813968 494 dbSNP
rs1423730536 496 dbSNP
rs1221542215 505 dbSNP
rs1012762815 514 dbSNP
rs559237884 518 dbSNP
rs1279757997 522 dbSNP
rs1161395544 523 dbSNP
rs779782311 525 dbSNP
rs149360806 526 dbSNP
rs993679790 532 dbSNP
rs373992974 538 dbSNP
rs1047216439 540 dbSNP
rs888646386 541 dbSNP
rs999966173 542 dbSNP
rs1334043545 543 dbSNP
rs1032930610 544 dbSNP
rs1407542417 552 dbSNP
rs1445053311 554 dbSNP
rs1280620301 557 dbSNP
rs1159293689 558 dbSNP
rs144837587 560 dbSNP
rs1244268486 566 dbSNP
rs1183344086 569 dbSNP
rs1294333273 571 dbSNP
rs148174157 572 dbSNP
rs371572321 581 dbSNP
rs1445862552 582 dbSNP
rs1284526087 586 dbSNP
rs1218290648 588 dbSNP
rs1357042840 591 dbSNP
rs998153170 604 dbSNP
rs1029677247 616 dbSNP
rs879869487 617 dbSNP
rs761150613 620 dbSNP
rs1206587059 621 dbSNP
rs921669091 622 dbSNP
rs1032835212 625 dbSNP
rs1299051317 627 dbSNP
rs1421804353 630 dbSNP
rs1238748300 631 dbSNP
rs930824172 632 dbSNP
rs116156220 638 dbSNP
rs774262471 645 dbSNP
rs1185222423 649 dbSNP
rs940940810 664 dbSNP
rs559588185 670 dbSNP
rs528314732 677 dbSNP
rs773918831 681 dbSNP
rs1290576225 682 dbSNP
rs1473283346 685 dbSNP
rs1167533791 688 dbSNP
rs1270829974 689 dbSNP
rs551369772 695 dbSNP
rs1278961937 700 dbSNP
rs1045249771 704 dbSNP
rs1343933418 704 dbSNP
rs1302721731 708 dbSNP
rs142940746 710 dbSNP
rs1049324643 713 dbSNP
rs1329572471 722 dbSNP
rs185729832 733 dbSNP
rs1168983341 739 dbSNP
rs1406011486 740 dbSNP
rs1424934278 744 dbSNP
rs888582582 749 dbSNP
rs1000019978 765 dbSNP
rs1479164237 765 dbSNP
rs1199639880 769 dbSNP
rs1489350871 773 dbSNP
rs1032816095 776 dbSNP
rs1203517978 788 dbSNP
rs751246026 792 dbSNP
rs552393408 794 dbSNP
rs1039904788 797 dbSNP
rs1220556707 809 dbSNP
rs1321425731 811 dbSNP
rs1010589433 812 dbSNP
rs1317685718 813 dbSNP
rs900111311 814 dbSNP
rs1369977462 818 dbSNP
rs1296853128 819 dbSNP
rs1191025035 820 dbSNP
rs1401739302 824 dbSNP
rs59127858 825 dbSNP
rs776794005 826 dbSNP
rs1467801175 839 dbSNP
rs1427924159 840 dbSNP
rs1029650330 847 dbSNP
rs1176125700 847 dbSNP
rs1245123210 847 dbSNP
rs1434585339 847 dbSNP
rs903216750 849 dbSNP
rs906015198 850 dbSNP
rs1176463608 851 dbSNP
rs550113119 855 dbSNP
rs966131432 861 dbSNP
rs1201648297 864 dbSNP
rs765326359 866 dbSNP
rs190052699 867 dbSNP
rs1234023144 870 dbSNP
rs1258076374 871 dbSNP
rs568948182 874 dbSNP
rs1223596558 876 dbSNP
rs1378053668 878 dbSNP
rs1333974825 879 dbSNP
rs370154339 881 dbSNP
rs527833721 881 dbSNP
rs547584087 881 dbSNP
rs780816767 881 dbSNP
rs1302988602 883 dbSNP
rs1467119821 885 dbSNP
rs1343084411 887 dbSNP
rs1201678047 890 dbSNP
rs535932556 891 dbSNP
rs1381883799 895 dbSNP
rs1244797083 899 dbSNP
rs552679578 899 dbSNP
rs1442758658 900 dbSNP
rs1256777655 904 dbSNP
rs146111732 905 dbSNP
rs1022829427 908 dbSNP
rs971293266 909 dbSNP
rs1215267478 911 dbSNP
rs1371582460 912 dbSNP
rs1244229839 913 dbSNP
rs1313988089 913 dbSNP
rs796921869 913 dbSNP
rs992847514 913 dbSNP
rs918156159 914 dbSNP
rs1287948003 919 dbSNP
rs981392816 919 dbSNP
rs538173763 921 dbSNP
rs1045036365 924 dbSNP
rs1428674691 924 dbSNP
rs1423757433 926 dbSNP
rs1001725243 928 dbSNP
rs1339236244 931 dbSNP
rs755671590 933 dbSNP
rs1189455586 935 dbSNP
rs1425655150 936 dbSNP
rs928968113 938 dbSNP
rs141129251 939 dbSNP
rs1488776677 939 dbSNP
rs984525041 943 dbSNP
rs1288409390 949 dbSNP
rs539188461 952 dbSNP
rs1220737035 956 dbSNP
rs1316617972 959 dbSNP
rs1266577868 961 dbSNP
rs908969736 962 dbSNP
rs1052447201 963 dbSNP
rs377701103 964 dbSNP
rs1294281430 965 dbSNP
rs1278344058 968 dbSNP
rs200156788 968 dbSNP
rs1400078191 969 dbSNP
rs1342055541 972 dbSNP
rs140131412 973 dbSNP
rs900039308 982 dbSNP
rs1264963651 985 dbSNP
rs1391117908 987 dbSNP
rs1345574706 990 dbSNP
rs1164755887 994 dbSNP
rs934236195 995 dbSNP
rs1019304942 999 dbSNP
rs1204350130 1004 dbSNP
rs538168652 1006 dbSNP
rs1051820656 1008 dbSNP
rs570754638 1015 dbSNP
rs1449026949 1017 dbSNP
rs868241885 1017 dbSNP
rs1491142648 1019 dbSNP
rs901758970 1019 dbSNP
rs1491123175 1020 dbSNP
rs1268328904 1023 dbSNP
rs995878996 1026 dbSNP
rs999268370 1028 dbSNP
rs763305052 1029 dbSNP
rs1218725701 1033 dbSNP
rs951667026 1039 dbSNP
rs893209387 1043 dbSNP
rs1005985533 1045 dbSNP
rs1014667615 1048 dbSNP
rs1479477494 1050 dbSNP
rs1178624434 1051 dbSNP
rs962544025 1052 dbSNP
rs1466236363 1053 dbSNP
rs772672908 1058 dbSNP
rs762223895 1059 dbSNP
rs548482605 1061 dbSNP
rs568333054 1073 dbSNP
rs1453600359 1074 dbSNP
rs992335877 1075 dbSNP
rs183098067 1076 dbSNP
rs574934914 1080 dbSNP
rs1017131988 1082 dbSNP
rs1238111891 1083 dbSNP
rs1026658289 1084 dbSNP
rs1459462648 1087 dbSNP
rs540706573 1087 dbSNP
rs754707668 1091 dbSNP
rs1218122781 1097 dbSNP
rs1298395524 1100 dbSNP
rs560600717 1101 dbSNP
rs1236615531 1104 dbSNP
rs1276192949 1104 dbSNP
rs936648301 1111 dbSNP
rs765386915 1112 dbSNP
rs1309913008 1115 dbSNP
rs1448971726 1115 dbSNP
rs984883063 1117 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cuucagugagggUCCGUCGACGuu 5'
                      ||  ||| ||  
Target 5' -----gugugagAGAAAGCAGC-- 3'
1 - 17
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000354883.6 | 3UTR | GUGUGAGAGAAAGCAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
PAAD -0.978 0.01 -0.400 0.3 4 Click to see details
STAD -0.358 0.02 -0.394 0.01 32 Click to see details
KIRP -0.337 0.03 -0.295 0.05 32 Click to see details
ESCA 0.517 0.05 0.445 0.09 11 Click to see details
HNSC 0.204 0.1 0.191 0.11 42 Click to see details
LIHC -0.188 0.1 -0.169 0.12 49 Click to see details
KICH -0.255 0.11 -0.282 0.09 25 Click to see details
CESC -0.93 0.12 -1.000 0.5 3 Click to see details
CHOL -0.417 0.13 -0.467 0.1 9 Click to see details
BRCA -0.12 0.14 -0.189 0.04 84 Click to see details
LUAD -0.329 0.15 -0.336 0.14 12 Click to see details
COAD -0.352 0.2 -0.119 0.39 8 Click to see details
THCA -0.112 0.2 -0.231 0.04 59 Click to see details
PRAD -0.104 0.24 0.001 0.5 50 Click to see details
UCEC 0.119 0.31 0.033 0.45 19 Click to see details
KIRC 0.055 0.33 0.064 0.3 68 Click to see details
BLCA 0.055 0.41 -0.049 0.42 18 Click to see details
LUSC -0.024 0.44 -0.013 0.47 38 Click to see details
PCPG -0.093 0.47 -0.500 0.33 3 Click to see details
PCPG -0.093 0.47 -0.500 0.33 3 Click to see details
PCPG -0.093 0.47 -0.500 0.33 3 Click to see details
195 hsa-miR-1301-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035957 MRPL10 mitochondrial ribosomal protein L10 1 1
MIRT035958 ZNF816 zinc finger protein 816 1 1
MIRT035959 HDLBP high density lipoprotein binding protein 1 1
MIRT035960 GNG10 G protein subunit gamma 10 1 1
MIRT035961 MICALL1 MICAL like 1 1 1
MIRT035962 CCNH cyclin H 1 1
MIRT035963 RAD23B RAD23 homolog B, nucleotide excision repair protein 1 1
MIRT035964 HIST2H2AC histone cluster 2 H2A family member c 1 1
MIRT035965 PARL presenilin associated rhomboid like 1 1
MIRT035966 TXN thioredoxin 1 1
MIRT035967 CREBBP CREB binding protein 1 1
MIRT035968 CYTB cytochrome b 1 1
MIRT035969 GLI3 GLI family zinc finger 3 1 1
MIRT035970 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 1 1
MIRT035971 PREP prolyl endopeptidase 1 1
MIRT035972 COL6A1 collagen type VI alpha 1 chain 1 1
MIRT035973 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 1 1
MIRT035974 ADCY3 adenylate cyclase 3 1 1
MIRT035975 POLB DNA polymerase beta 1 1
MIRT035976 HMGA1 high mobility group AT-hook 1 1 1
MIRT035977 SKP1 S-phase kinase associated protein 1 1 1
MIRT035978 ADD2 adducin 2 1 1
MIRT035979 ANXA11 annexin A11 1 1
MIRT035980 CORO1C coronin 1C 1 1
MIRT035981 MDH2 malate dehydrogenase 2 1 1
MIRT035982 BICD2 BICD cargo adaptor 2 1 1
MIRT035983 SPTBN1 spectrin beta, non-erythrocytic 1 1 1
MIRT035984 CDK5RAP2 CDK5 regulatory subunit associated protein 2 1 1
MIRT035985 POLR3H RNA polymerase III subunit H 1 1
MIRT035986 COX1 cytochrome c oxidase subunit I 1 1
MIRT035987 HEATR2 dynein axonemal assembly factor 5 1 1
MIRT035988 RPS5 ribosomal protein S5 1 1
MIRT035989 CCT3 chaperonin containing TCP1 subunit 3 1 1
MIRT035990 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta 1 1
MIRT035991 RPL3 ribosomal protein L3 1 1
MIRT035992 TMPO thymopoietin 1 1
MIRT035993 COPE coatomer protein complex subunit epsilon 1 1
MIRT035994 NONO non-POU domain containing octamer binding 1 1
MIRT035995 BLCAP bladder cancer associated protein 1 1
MIRT035996 NUP133 nucleoporin 133 1 1
MIRT035997 VCP valosin containing protein 1 1
MIRT035998 ARIH2 ariadne RBR E3 ubiquitin protein ligase 2 1 1
MIRT035999 SON SON DNA binding protein 1 1
MIRT036000 ATP5J ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6 1 1
MIRT036001 VIM vimentin 1 1
MIRT036002 FKBP8 FK506 binding protein 8 1 1
MIRT036003 SPECC1L sperm antigen with calponin homology and coiled-coil domains 1 like 1 1
MIRT036004 ZCCHC14 zinc finger CCHC-type containing 14 1 1
MIRT036005 TXNL4A thioredoxin like 4A 1 1
MIRT036006 UBE2J2 ubiquitin conjugating enzyme E2 J2 1 1
MIRT036007 FOPNL FGFR1OP N-terminal like 1 1
MIRT036008 VDAC1 voltage dependent anion channel 1 1 1
MIRT036009 CDIP1 cell death inducing p53 target 1 1 1
MIRT036010 EBNA1BP2 EBNA1 binding protein 2 1 1
MIRT036011 CD276 CD276 molecule 1 1
MIRT036012 RPS2 ribosomal protein S2 1 1
MIRT036013 USP28 ubiquitin specific peptidase 28 1 1
MIRT036014 ZMIZ1 zinc finger MIZ-type containing 1 1 1
MIRT036015 B4GALT7 beta-1,4-galactosyltransferase 7 1 1
MIRT036016 CAND1 cullin associated and neddylation dissociated 1 1 1
MIRT036017 CCDC104 cilia and flagella associated protein 36 1 1
MIRT036018 IMPDH1 inosine monophosphate dehydrogenase 1 1 1
MIRT036019 ATXN2L ataxin 2 like 1 1
MIRT036020 PARP1 poly(ADP-ribose) polymerase 1 1 1
MIRT036021 TNXB tenascin XB 1 1
MIRT036022 SYNGR1 synaptogyrin 1 1 1
MIRT036023 TUT1 terminal uridylyl transferase 1, U6 snRNA-specific 1 1
MIRT036024 ATXN7L3B ataxin 7 like 3B 1 1
MIRT036025 BCL2L13 BCL2 like 13 1 1
MIRT036026 RBM42 RNA binding motif protein 42 1 1
MIRT036027 HDGF heparin binding growth factor 1 1
MIRT036028 NAT8L N-acetyltransferase 8 like 1 1
MIRT036029 DLST dihydrolipoamide S-succinyltransferase 1 1
MIRT036030 CEP104 centrosomal protein 104 1 1
MIRT036031 NCOR1 nuclear receptor corepressor 1 1 1
MIRT036032 COCH cochlin 1 1
MIRT036033 NUTF2 nuclear transport factor 2 1 1
MIRT036034 KMT2E lysine methyltransferase 2E 1 1
MIRT036035 RANGAP1 Ran GTPase activating protein 1 1 1
MIRT036036 SEPHS2 selenophosphate synthetase 2 1 1
MIRT036037 DYNC1I2 dynein cytoplasmic 1 intermediate chain 2 1 1
MIRT036038 ZCCHC24 zinc finger CCHC-type containing 24 1 1
MIRT036039 TRRAP transformation/transcription domain associated protein 1 1
MIRT036040 INPP4A inositol polyphosphate-4-phosphatase type I A 1 1
MIRT036041 CHN1 chimerin 1 1 1
MIRT036042 FECH ferrochelatase 1 1
MIRT036043 DCTD dCMP deaminase 1 1
MIRT036044 UBA1 ubiquitin like modifier activating enzyme 1 1 1
MIRT036045 PKM pyruvate kinase, muscle 1 1
MIRT036046 SSRP1 structure specific recognition protein 1 1 1
MIRT036047 CELF1 CUGBP Elav-like family member 1 1 1
MIRT036048 TSR2 TSR2, ribosome maturation factor 1 1
MIRT036049 TP53BP2 tumor protein p53 binding protein 2 1 1
MIRT036050 GSG2 histone H3 associated protein kinase 1 1
MIRT036051 WDFY1 WD repeat and FYVE domain containing 1 1 1
MIRT036052 RPA1 replication protein A1 1 1
MIRT036053 TMEM41A transmembrane protein 41A 1 1
MIRT036054 BIRC5 baculoviral IAP repeat containing 5 1 1
MIRT036055 NOP2 NOP2 nucleolar protein 1 1
MIRT036056 PEF1 penta-EF-hand domain containing 1 1 1
MIRT036057 CYB5D1 cytochrome b5 domain containing 1 1 1
MIRT036058 HIGD1A HIG1 hypoxia inducible domain family member 1A 1 1
MIRT036059 WDR61 WD repeat domain 61 1 1
MIRT036060 MINK1 misshapen like kinase 1 1 1
MIRT036061 RPL35A ribosomal protein L35a 1 1
MIRT036062 WNT3 Wnt family member 3 1 1
MIRT036063 SYNJ2 synaptojanin 2 1 1
MIRT036064 CFL1 cofilin 1 1 1
MIRT036065 ALDOA aldolase, fructose-bisphosphate A 1 1
MIRT036066 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 1 1
MIRT064841 ZBTB18 zinc finger and BTB domain containing 18 2 4
MIRT090782 MBNL1 muscleblind like splicing regulator 1 2 2
MIRT163227 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 2
MIRT214143 LMNB1 lamin B1 2 2
MIRT291875 ZNF333 zinc finger protein 333 2 2
MIRT292477 ZNF507 zinc finger protein 507 2 2
MIRT306035 SKIL SKI like proto-oncogene 2 2
MIRT443004 TRIOBP TRIO and F-actin binding protein 2 2
MIRT457830 ITPRIP inositol 1,4,5-trisphosphate receptor interacting protein 2 2
MIRT460067 RFTN2 raftlin family member 2 2 2
MIRT460342 ARL14EP ADP ribosylation factor like GTPase 14 effector protein 2 2
MIRT463060 ZNF639 zinc finger protein 639 2 2
MIRT466204 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT476159 GOLGA8B golgin A8 family member B 2 2
MIRT486953 HLA-B major histocompatibility complex, class I, B 2 2
MIRT492391 SEMA6A semaphorin 6A 2 2
MIRT495050 CTRC chymotrypsin C 2 4
MIRT500010 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501565 PLEKHF2 pleckstrin homology and FYVE domain containing 2 2 4
MIRT502680 CSNK1G3 casein kinase 1 gamma 3 2 8
MIRT503058 CAB39 calcium binding protein 39 2 2
MIRT504615 PLK1 polo like kinase 1 2 2
MIRT505706 SESN2 sestrin 2 2 2
MIRT506197 PHF19 PHD finger protein 19 2 2
MIRT506821 KIF23 kinesin family member 23 2 6
MIRT513782 PAWR pro-apoptotic WT1 regulator 2 6
MIRT527011 MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 2 4
MIRT527806 KLRD1 killer cell lectin like receptor D1 2 2
MIRT537896 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 4
MIRT537925 DST dystonin 2 2
MIRT540049 FOXC1 forkhead box C1 2 2
MIRT543395 DROSHA drosha ribonuclease III 2 2
MIRT545447 SC5D sterol-C5-desaturase 2 4
MIRT546876 RAB10 RAB10, member RAS oncogene family 2 4
MIRT549419 ACVR2B activin A receptor type 2B 2 2
MIRT551857 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT552453 ZNF410 zinc finger protein 410 2 2
MIRT552772 YIPF6 Yip1 domain family member 6 2 4
MIRT552788 YAF2 YY1 associated factor 2 2 2
MIRT554247 SLAIN2 SLAIN motif family member 2 2 2
MIRT554773 RHEBP1 RHEB pseudogene 1 2 4
MIRT555862 PAIP1 poly(A) binding protein interacting protein 1 2 2
MIRT556475 LIPA lipase A, lysosomal acid type 2 2
MIRT556655 KMT2D lysine methyltransferase 2D 2 4
MIRT558210 EFCAB14 EF-hand calcium binding domain 14 2 4
MIRT558306 DUSP14 dual specificity phosphatase 14 2 2
MIRT558818 CDCA4 cell division cycle associated 4 2 4
MIRT559370 ATP13A3 ATPase 13A3 2 2
MIRT559541 ARGLU1 arginine and glutamate rich 1 2 4
MIRT563022 ZNF680 zinc finger protein 680 2 2
MIRT563036 NBPF12 NBPF member 12 2 2
MIRT563791 SLC28A1 solute carrier family 28 member 1 2 2
MIRT565903 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT566957 LBR lamin B receptor 2 2
MIRT567971 CPEB3 cytoplasmic polyadenylation element binding protein 3 2 2
MIRT570389 TSC22D2 TSC22 domain family member 2 2 2
MIRT575250 Timp3 tissue inhibitor of metalloproteinase 3 2 2
MIRT611519 ZNF25 zinc finger protein 25 2 2
MIRT611592 POTED POTE ankyrin domain family member D 2 2
MIRT614228 NPTXR neuronal pentraxin receptor 2 2
MIRT625933 SCYL3 SCY1 like pseudokinase 3 2 2
MIRT627320 TULP4 tubby like protein 4 2 2
MIRT631516 CTBS chitobiase 2 2
MIRT640705 MRS2 MRS2, magnesium transporter 2 2
MIRT642208 RUVBL2 RuvB like AAA ATPase 2 2 2
MIRT642767 FAM9C family with sequence similarity 9 member C 2 2
MIRT648411 KIAA0146 scaffolding protein involved in DNA repair 1 1
MIRT658045 FUT11 fucosyltransferase 11 2 2
MIRT663720 GLUL glutamate-ammonia ligase 2 2
MIRT698536 TFRC transferrin receptor 2 2
MIRT699988 RPS24 ribosomal protein S24 2 2
MIRT700433 PURB purine rich element binding protein B 2 2
MIRT705890 ADCY9 adenylate cyclase 9 2 2
MIRT706974 XPO5 exportin 5 2 2
MIRT710564 KIAA1958 KIAA1958 2 2
MIRT714070 RUNDC3B RUN domain containing 3B 2 2
MIRT716931 FAM13A family with sequence similarity 13 member A 2 2
MIRT717341 RAB40A RAB40A, member RAS oncogene family 2 2
MIRT717738 MYLK myosin light chain kinase 5 2
MIRT722963 SLC25A26 solute carrier family 25 member 26 2 2
MIRT723470 WIPF2 WAS/WASL interacting protein family member 2 2 2
MIRT732447 STAT3 signal transducer and activator of transcription 3 2 0
MIRT733631 SIRT1 sirtuin 1 3 0
MIRT733632 CCND1 cyclin D1 3 0
MIRT736012 RHEB Ras homolog, mTORC1 binding 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (BGC823)
hsa-mir-1301 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-1301 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-1301 Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-1301 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-1301 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant cell line (SGC-7901)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant cell line (BGC-823)
hsa-miR-1301-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1301-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (SW1990)
hsa-miR-1301-3p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (SW1990)
hsa-miR-1301-3p Plx-4720 24180719 NSC757438 sensitive High Thyroid Cancer cell line (8505c, BCPAP)
hsa-miR-1301-3p Imatinib 5291 NSC743414 approved sensitive Low Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-1301-3p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer tissue
hsa-miR-1301-3p Fluorouracil 3385 NSC19893 approved resistant High Gastric Cancer tissue
hsa-miR-1301-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (M14) (2uM)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (M14) (50nM)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (M14) (2uM)
hsa-miR-1301-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (M14) (50nM)
hsa-miR-1301-3p Epirubicin 41867 NSC256942 approved sensitive Low Osteosarcoma cell line (U-2-OS, SAOS-2)
hsa-miR-1301-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901, BGC-823)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CP20)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-1301-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive High Epithelial Ovarian Cancer cell line (SKOV3)
hsa-miR-1301-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-1301-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1301-3p Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1301-3p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-1301-3p Tamoxifen+Fulvestrant resistant cell line (LCC9)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-1301-3p 4-Hydroxytamoxifen+Tamoxifen sensitive cell line (LY2)
hsa-miR-1301-3p Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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