pre-miRNA Information
pre-miRNA hsa-mir-6752   
Genomic Coordinates chr11: 67490245 - 67490315
Description Homo sapiens miR-6752 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6752-3p
Sequence 51| UCCCUGCCCCCAUACUCCCAG |71
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs760443460 2 dbSNP
rs746450218 4 dbSNP
rs897972135 4 dbSNP
rs766020814 10 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FADS1   
Synonyms D5D, FADS6, FADSD5, LLCDL1, TU12
Description fatty acid desaturase 1
Transcript NM_013402   
Expression
Putative miRNA Targets on FADS1
3'UTR of FADS1
(miRNA target sites are highlighted)
>FADS1|NM_013402|3'UTR
   1 CAACAGCCACCCTGCCCAGTCTGGAAGAAGAGGAGGAAGACTCTGGAGCCAAGGCAGAGGGGAGCTTGAGGGACAATGCC
  81 ACTATAGTTTAATACTCAGAGGGGGTTGGGTTTGGGGACATAAAGCCTCTGACTCAAACTCCTCCCTTTTATCTTCTAGC
 161 CACAGTTCTAAGACCCAAAGTGGGGGGTGGACACAGAAGTCCCTAGGAGGGAAGGAGCTGTTGGGGCAGGGGTGTAAATT
 241 ATTTCCTTTTTCTAGTTTGGCACATGCAGGTAGTTGGTGAACAGAGAGAACCAGGAGGGTAACAGAAGAGGAGGGACCTA
 321 CTGAACCCAGAGTCAGGAAGAGATTTAACACTAAAATTCCACTCATGCCGGGCGTGGTGGCACGCGCCTGTAATCCCAGC
 401 TACCCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCGGGGAGGTGGAGGTTGCAGTGAGCTGAGATCACGCCATTGTACT
 481 CCAGCCTGGGCGACAGAGCAAGACTCCATTTCAAAAAAAAAAAAAAAATCCACTCATATAAAAGGTGAGCTCAGCTCACT
 561 GGTCCATTTCTCAGTGGCTTCTCCATCCTCATTTGCAAACCTCAGAGGGATAAGGCAGTTGAACCTGATGAGCAAGAATT
 641 ATAACAGCAAGGAAACATTAATGCTTAGAATTCTGAGATCCAGCACAACTCAGTCTGTGGGAGCTCAGCTCGCTGCCCAG
 721 GGATAGGTATGACCTATGTCTGCCTTAGGCTGCTGGGAGATGCCATTCTCCAGTTTCAGAAGCAGGCAGGGCAAAGGTCA
 801 AGACTGTGGTATTGGGGTCTTTTGGCTCTGAAGGATCCTGGAACCACTGATTTTGGTTTATTCCCTCCAGGGTCTAAAGA
 881 GAACAAGAGGTGCTAGCTCTTACCAAAACAGATGGTAGAGAGAGTTGCTGGCTATTTAAAAAGCTCTTTCATCTTTTAAT
 961 TCACCTCTTCTTTTCACCTCTTTAACCACTCCTCAGGAACAGAACACTTCTAGGACTGGGGGTCTTTTAGCTCCATAAGC
1041 AAGTGAGCAGATGGGACAAGTTAGTCTTTTCTCCCTAGAAACAAAGGGGATGCCCAGTGGTTTCCCTTTGCTTCCCAACC
1121 TAAAATTTCAAGTTTAATAAAATAGCAATTAGCAGAAGTGACCAAATTGGGAGATAATTATCAGTCATGAGGAAAGACAC
1201 AGATTTCGGTCATAAAGAATGTAAGGGCTATAAGTAGAAACTTTCTATAACCTAAATGATGTTATAGAATTATTTTTGAG
1281 CAGGAGCAGAAAGATTAAATATGATCACTTCATACTTCTAAATCAGAAATAGGAAGATTAAAACCACAGAACAGTTTGTG
1361 ATTTCTATTGCTGTAGCTAGGTATCTTACTCTGTCCACTCTTGTTCAAGTATCTAACTCTTCTGGAAACCAAATAGGCTT
1441 TAGAAGAGATTATCCTATATTCCTATCAGTATAATACTAAAATGTAACTTTTTAATCATCTGGTTTTTAAAAGATAAACA
1521 GTTTAGCCCATCTCTCCAGAGAGCAAACATAGGAATATGACTCAGGAGCCTCCTAGGGCTTATCATCAGCCCTCACACCC
1601 GCTTCCCCCTCCAACCCACAGCCTTTGCTTCCAGGTGGCAGGATTACTACTTTGCCTCTTCAGCAGCATCTACTCTAGGC
1681 ATATTGATCATTTTAGACACTGGGAGAAGAGAACCTCAAACTAGGAGGAAAAGACAGAGCCTCCACTTAGTTTTGGGAGG
1761 GGATGGCAGACAGTCAAGGAGATGAGCGTCCTAAGGCATGTTGGGATAGGGTCAGATGCACCACCCATGGAGAGGTTTGT
1841 CAACACAAAGACATGGAAGGTTAGAGGTTTGTCAACAAAAAGACATGGAAGGTTAGGTTTGTCAACACAAAGACATGGAA
1921 GATTAGAGGTTTGTCAACACAAAGACACAGGAAGAATGGGCTGCAGAAGATTTAGATGTTTTCCATTTGGGCACATTTTA
2001 CTTAGCTGGAGAACTAGGTTTAAAACAGCCTGGGTAGGAAAATTAGAAGCAAGCTGGATGCAGTGGCTCATGCCTGTAAT
2081 CCCAACACTTTTGGGAGGTCCAGGCAGGAGGATCACTTGGGCCCAGGAGGTCAAGCCTGCAGCGAGCTGAGATCACACCA
2161 CTGCACTCCAGCCTGGGGTGATAGAACAAGACCCTGTCTCAAAAAAAAAAAAAACAACAAAAACTTAGAATTGAGGAGTT
2241 GTACCTCCATTGGCTTCCTCACTCCAAAATAGGTGCTGATCCTTCCTATTCCTATTCTTTGCCACCTTTTGGGTGTGGTG
2321 TCACCAGCCTGTTTAGCCAAGTAGCTTTGGGCATAGGCTGCCCAATCTGAGCAAACACCAGTGAGGCTCTATTGAGCCAA
2401 GACCAAGTCCTCAAAGCACCTGAACCACTGTGGCCTTCTCAGCCTACAGCAGTGTGGTCTCTTACATGGCCACAAAGGGA
2481 CACACAGTGACAAAAGGCTCGGAATGTTACAATGGTAAAATGAGTGATCTCAAATCCACTGACAGATATAAAATAGGCTT
2561 AGAGAGGAAAAGCTGCCTCTGGTCAAGTAGATCATGGCAGCATGAATTCCAACTCACTTTTTTACAACTCCAACTTCTAT
2641 GTTTATCTTTGTTACTTTCACTTTTTTACAACCTGGCCAGAGGCATTTTTTAAATCAGGCCCAATATCAGTATTCTTTTT
2721 GTGTGTGCCAATTTTGTTATCACATCCCTATGAAGTTGAAAAATAAAGTTAATTTTGACCAAAAGAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gacCCUC-AUACCCCCGUCCCu 5'
             |||| |:| ||||||||| 
Target 5' gaaGGAGCTGTTGGGGCAGGGg 3'
211 - 232 170.00 -28.80
2
miRNA  3' gacccUCAUACCCCCGUCCCu 5'
               || | |  ||||||| 
Target 5' gtttcAG-AAGCAGGCAGGGc 3'
773 - 792 143.00 -13.30
3
miRNA  3' gaCCCUCAUACCCCCGUCCcu 5'
            ||||| :|   ||||||  
Target 5' ttGGGAG-GTCCAGGCAGGag 3'
2091 - 2110 134.00 -21.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31593765 6 COSMIC
COSN30540441 39 COSMIC
COSN26731607 53 COSMIC
COSN31490212 68 COSMIC
COSN30167375 153 COSMIC
COSN5865253 157 COSMIC
COSN28882997 182 COSMIC
COSN31589300 227 COSMIC
COSN23425296 282 COSMIC
COSN21446282 330 COSMIC
COSN10090233 353 COSMIC
COSN10090232 355 COSMIC
COSN18772438 512 COSMIC
COSN31959556 711 COSMIC
COSN1540063 749 COSMIC
COSN29875090 761 COSMIC
COSN5916010 828 COSMIC
COSN1540061 1071 COSMIC
COSN29788818 1267 COSMIC
COSN26485272 1509 COSMIC
COSN20629641 1654 COSMIC
COSN20375821 1976 COSMIC
COSN15132385 2153 COSMIC
COSN29901197 2200 COSMIC
COSN31484521 2297 COSMIC
COSN30169681 2387 COSMIC
COSN26603306 2393 COSMIC
COSN195143 2464 COSMIC
COSN26557586 2481 COSMIC
COSN31546193 2501 COSMIC
COSN7016040 2528 COSMIC
COSN21695468 2758 COSMIC
rs174546 53 GWAS
rs174545 577 GWAS
rs174544 2130 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs933946270 5 dbSNP
rs532703208 7 dbSNP
rs1392788058 8 dbSNP
rs1399354038 10 dbSNP
rs1252285031 17 dbSNP
rs1171483309 18 dbSNP
rs1177705708 19 dbSNP
rs901171815 21 dbSNP
rs1466157114 22 dbSNP
rs1457225120 25 dbSNP
rs766387843 27 dbSNP
rs1333641416 29 dbSNP
rs1156807714 32 dbSNP
rs1438798692 35 dbSNP
rs1397541182 38 dbSNP
rs760497860 38 dbSNP
rs1238575658 43 dbSNP
rs942782114 46 dbSNP
rs1332849442 51 dbSNP
rs174546 53 dbSNP
rs550432519 60 dbSNP
rs969048733 85 dbSNP
rs1322584248 101 dbSNP
rs1248901169 105 dbSNP
rs1221515803 108 dbSNP
rs1252817364 110 dbSNP
rs1023243113 117 dbSNP
rs1190522738 135 dbSNP
rs1194857917 142 dbSNP
rs1482317850 143 dbSNP
rs1200819739 146 dbSNP
rs945869346 146 dbSNP
rs1479729384 160 dbSNP
rs1237039144 163 dbSNP
rs1173073148 165 dbSNP
rs376496188 180 dbSNP
rs1373983727 181 dbSNP
rs913112963 182 dbSNP
rs1367565939 186 dbSNP
rs992753935 189 dbSNP
rs1302606818 194 dbSNP
rs1344852504 198 dbSNP
rs757901963 202 dbSNP
rs960261995 217 dbSNP
rs752258782 229 dbSNP
rs1034009553 231 dbSNP
rs530410253 232 dbSNP
rs368544311 235 dbSNP
rs903350054 239 dbSNP
rs1230248917 248 dbSNP
rs1267517161 251 dbSNP
rs1199542191 253 dbSNP
rs1188744884 256 dbSNP
rs1021742152 275 dbSNP
rs1376327668 282 dbSNP
rs1301805037 286 dbSNP
rs1011656504 293 dbSNP
rs561617892 296 dbSNP
rs1005643025 297 dbSNP
rs541393569 308 dbSNP
rs1387374354 311 dbSNP
rs1425508330 312 dbSNP
rs1163082089 313 dbSNP
rs899890674 321 dbSNP
rs1363771143 327 dbSNP
rs1456340455 350 dbSNP
rs887279394 352 dbSNP
rs1362435345 356 dbSNP
rs1381391611 360 dbSNP
rs1360858039 364 dbSNP
rs1305898319 367 dbSNP
rs1293149939 369 dbSNP
rs764688467 370 dbSNP
rs1246242552 372 dbSNP
rs1356561055 373 dbSNP
rs537420361 374 dbSNP
rs901445489 383 dbSNP
rs1170709560 384 dbSNP
rs1185188255 385 dbSNP
rs1245354857 386 dbSNP
rs1422340734 390 dbSNP
rs943999011 390 dbSNP
rs1183153921 395 dbSNP
rs1383462375 395 dbSNP
rs1420913579 420 dbSNP
rs1039682731 427 dbSNP
rs1413132185 428 dbSNP
rs559671802 429 dbSNP
rs543047718 436 dbSNP
rs1452930712 437 dbSNP
rs1047417373 446 dbSNP
rs868196936 448 dbSNP
rs904572192 449 dbSNP
rs1407953485 450 dbSNP
rs1204803746 452 dbSNP
rs1483584832 455 dbSNP
rs929848188 459 dbSNP
rs1277286729 469 dbSNP
rs1043163928 470 dbSNP
rs1206155949 481 dbSNP
rs190323640 491 dbSNP
rs973820809 492 dbSNP
rs1214253506 496 dbSNP
rs1311337150 498 dbSNP
rs1461991711 499 dbSNP
rs1228415535 509 dbSNP
rs1381178040 510 dbSNP
rs1286382835 511 dbSNP
rs1409202993 512 dbSNP
rs1481726543 521 dbSNP
rs913060526 525 dbSNP
rs1309667909 527 dbSNP
rs1456550383 528 dbSNP
rs1407342304 529 dbSNP
rs1418445918 529 dbSNP
rs1491005729 529 dbSNP
rs34397549 529 dbSNP
rs781624780 529 dbSNP
rs878919084 529 dbSNP
rs947818320 537 dbSNP
rs993101121 540 dbSNP
rs916291454 544 dbSNP
rs1165501868 550 dbSNP
rs927222972 562 dbSNP
rs1227093509 566 dbSNP
rs34353896 570 dbSNP
rs1285701138 575 dbSNP
rs174545 577 dbSNP
rs1409938148 587 dbSNP
rs11601366 588 dbSNP
rs1182073685 600 dbSNP
rs1276906478 617 dbSNP
rs960617229 624 dbSNP
rs1232379135 625 dbSNP
rs1035978798 627 dbSNP
rs978059333 630 dbSNP
rs967568326 641 dbSNP
rs1480706144 645 dbSNP
rs558390347 652 dbSNP
rs35414140 653 dbSNP
rs545194523 653 dbSNP
rs1254376708 659 dbSNP
rs1411310253 674 dbSNP
rs544029962 680 dbSNP
rs1353444233 700 dbSNP
rs1274901681 703 dbSNP
rs1407396983 706 dbSNP
rs1304406608 711 dbSNP
rs1346738965 712 dbSNP
rs1487272257 720 dbSNP
rs1264502464 726 dbSNP
rs1221570413 730 dbSNP
rs1273501788 735 dbSNP
rs143861362 737 dbSNP
rs1018743072 742 dbSNP
rs1008264747 743 dbSNP
rs1272501948 747 dbSNP
rs998777711 759 dbSNP
rs185954532 785 dbSNP
rs1198532917 789 dbSNP
rs1244766289 809 dbSNP
rs1227679827 812 dbSNP
rs1046995502 821 dbSNP
rs1186761423 822 dbSNP
rs1418408722 826 dbSNP
rs535483588 832 dbSNP
rs898388084 835 dbSNP
rs1038184432 844 dbSNP
rs1427387274 846 dbSNP
rs140191296 850 dbSNP
rs1365643178 872 dbSNP
rs1289935280 884 dbSNP
rs1018949588 891 dbSNP
rs947850801 892 dbSNP
rs1328584692 896 dbSNP
rs916340173 900 dbSNP
rs771521614 901 dbSNP
rs1431994625 911 dbSNP
rs1006850563 912 dbSNP
rs1363378088 921 dbSNP
rs1367089101 926 dbSNP
rs1294338811 928 dbSNP
rs992309075 938 dbSNP
rs181081466 941 dbSNP
rs939054647 949 dbSNP
rs904519793 959 dbSNP
rs566538087 961 dbSNP
rs1386515108 963 dbSNP
rs1158570804 966 dbSNP
rs1448636104 967 dbSNP
rs1043112034 969 dbSNP
rs578232462 973 dbSNP
rs923589819 975 dbSNP
rs564815378 994 dbSNP
rs1247177521 997 dbSNP
rs188681793 999 dbSNP
rs1458192459 1000 dbSNP
rs1010310303 1001 dbSNP
rs1174322107 1002 dbSNP
rs1385348425 1005 dbSNP
rs145903 1013 dbSNP
rs977724956 1021 dbSNP
rs1443429312 1024 dbSNP
rs1432970085 1028 dbSNP
rs1268574599 1039 dbSNP
rs967642047 1044 dbSNP
rs1191396680 1045 dbSNP
rs1318148877 1056 dbSNP
rs76368178 1056 dbSNP
rs745609930 1057 dbSNP
rs1315944127 1061 dbSNP
rs111305555 1064 dbSNP
rs1242759378 1091 dbSNP
rs938528840 1093 dbSNP
rs145902 1114 dbSNP
rs927200569 1119 dbSNP
rs1329716476 1143 dbSNP
rs1044708583 1148 dbSNP
rs1463326306 1154 dbSNP
rs1205200836 1158 dbSNP
rs1243428638 1165 dbSNP
rs1441454144 1167 dbSNP
rs1262427128 1173 dbSNP
rs941993168 1174 dbSNP
rs1365018894 1180 dbSNP
rs1231064307 1182 dbSNP
rs1470808043 1186 dbSNP
rs1311377866 1188 dbSNP
rs1301779904 1191 dbSNP
rs1410251024 1192 dbSNP
rs1267141722 1193 dbSNP
rs908876100 1198 dbSNP
rs749588716 1202 dbSNP
rs1405675675 1207 dbSNP
rs983102281 1208 dbSNP
rs1331038991 1211 dbSNP
rs990326733 1213 dbSNP
rs1336365219 1220 dbSNP
rs1443337324 1221 dbSNP
rs1287593824 1227 dbSNP
rs964554807 1230 dbSNP
rs572872129 1231 dbSNP
rs537530505 1239 dbSNP
rs1343930753 1244 dbSNP
rs1198317116 1264 dbSNP
rs1008708900 1265 dbSNP
rs955427518 1266 dbSNP
rs1182113892 1277 dbSNP
rs1435923213 1284 dbSNP
rs976912833 1300 dbSNP
rs1026077533 1302 dbSNP
rs1377410077 1313 dbSNP
rs1464743642 1319 dbSNP
rs965929635 1322 dbSNP
rs776497901 1338 dbSNP
rs569016255 1339 dbSNP
rs1306231385 1347 dbSNP
rs1348632041 1349 dbSNP
rs1171327397 1357 dbSNP
rs185993617 1365 dbSNP
rs1406685639 1367 dbSNP
rs1283704765 1373 dbSNP
rs968985716 1376 dbSNP
rs1230652304 1380 dbSNP
rs1252647144 1383 dbSNP
rs1339628561 1388 dbSNP
rs1466027860 1391 dbSNP
rs530324730 1408 dbSNP
rs768803247 1412 dbSNP
rs891859764 1415 dbSNP
rs17156381 1423 dbSNP
rs1002671280 1431 dbSNP
rs1431762636 1450 dbSNP
rs1455269068 1458 dbSNP
rs1373897330 1463 dbSNP
rs1429345009 1470 dbSNP
rs1166858117 1476 dbSNP
rs1367468002 1478 dbSNP
rs1426482241 1486 dbSNP
rs547791071 1504 dbSNP
rs894969271 1507 dbSNP
rs1464953187 1514 dbSNP
rs1384916256 1517 dbSNP
rs1297421308 1520 dbSNP
rs1326731501 1531 dbSNP
rs1227198045 1542 dbSNP
rs1294787726 1566 dbSNP
rs1263298845 1572 dbSNP
rs1198640595 1583 dbSNP
rs1265323100 1588 dbSNP
rs745850376 1594 dbSNP
rs1482907826 1598 dbSNP
rs1256326864 1600 dbSNP
rs1449103152 1601 dbSNP
rs776678196 1638 dbSNP
rs939111460 1641 dbSNP
rs1387191216 1663 dbSNP
rs1445258215 1674 dbSNP
rs770697344 1684 dbSNP
rs1297143454 1700 dbSNP
rs1164139931 1701 dbSNP
rs1349269229 1704 dbSNP
rs1229493587 1706 dbSNP
rs1456327540 1711 dbSNP
rs1290476610 1714 dbSNP
rs1389033034 1719 dbSNP
rs527659403 1722 dbSNP
rs1328259248 1741 dbSNP
rs1433912896 1744 dbSNP
rs1332326843 1746 dbSNP
rs1395920566 1756 dbSNP
rs909150354 1771 dbSNP
rs1246127173 1781 dbSNP
rs1403571988 1787 dbSNP
rs149991368 1788 dbSNP
rs1241729854 1792 dbSNP
rs1261679799 1796 dbSNP
rs1428231665 1801 dbSNP
rs946332151 1812 dbSNP
rs527762120 1813 dbSNP
rs746804609 1819 dbSNP
rs1449752024 1822 dbSNP
rs1374263368 1828 dbSNP
rs1181428092 1835 dbSNP
rs923005906 1835 dbSNP
rs1332878339 1836 dbSNP
rs1411706094 1846 dbSNP
rs976232688 1850 dbSNP
rs1423122072 1860 dbSNP
rs1161117674 1867 dbSNP
rs1412480833 1869 dbSNP
rs545419144 1878 dbSNP
rs369065043 1879 dbSNP
rs1156658083 1882 dbSNP
rs964524706 1889 dbSNP
rs552883766 1891 dbSNP
rs1212670935 1896 dbSNP
rs1376257628 1897 dbSNP
rs1393675115 1912 dbSNP
rs990400430 1916 dbSNP
rs968936752 1917 dbSNP
rs1226980548 1922 dbSNP
rs1265384245 1925 dbSNP
rs181067085 1928 dbSNP
rs1209614412 1929 dbSNP
rs562688177 1931 dbSNP
rs911364741 1933 dbSNP
rs986956417 1934 dbSNP
rs1035733740 1936 dbSNP
rs1472221469 1940 dbSNP
rs1156754346 1944 dbSNP
rs8448 1946 dbSNP
rs1206108548 1951 dbSNP
rs955660022 1967 dbSNP
rs1431080351 1971 dbSNP
rs1414684406 1976 dbSNP
rs1003362289 1989 dbSNP
rs1356950395 1992 dbSNP
rs1282455115 1994 dbSNP
rs905977186 2022 dbSNP
rs1308077465 2028 dbSNP
rs758102662 2028 dbSNP
rs1350491916 2029 dbSNP
rs1408527050 2053 dbSNP
rs1025642981 2057 dbSNP
rs1022729029 2060 dbSNP
rs994136126 2087 dbSNP
rs1218898631 2089 dbSNP
rs535851459 2092 dbSNP
rs1341527779 2094 dbSNP
rs1295655756 2095 dbSNP
rs1205360750 2099 dbSNP
rs174544 2130 dbSNP
rs573506611 2134 dbSNP
rs1047639759 2142 dbSNP
rs1012106797 2143 dbSNP
rs553613646 2144 dbSNP
rs1190386158 2146 dbSNP
rs1422666131 2149 dbSNP
rs1056720719 2150 dbSNP
rs139299536 2151 dbSNP
rs1127959 2157 dbSNP
rs190592521 2162 dbSNP
rs557460309 2164 dbSNP
rs917933392 2165 dbSNP
rs1305450897 2167 dbSNP
rs946407174 2172 dbSNP
rs1189961009 2173 dbSNP
rs1436268903 2177 dbSNP
rs1273411995 2178 dbSNP
rs185398735 2182 dbSNP
rs992206359 2184 dbSNP
rs1229338118 2190 dbSNP
rs746960326 2192 dbSNP
rs1250755555 2199 dbSNP
rs1182662556 2200 dbSNP
rs508187 2201 dbSNP
rs568928148 2212 dbSNP
rs193250731 2213 dbSNP
rs1054739314 2214 dbSNP
rs200711264 2214 dbSNP
rs1244754734 2215 dbSNP
rs1426550073 2215 dbSNP
rs942956270 2215 dbSNP
rs372120634 2219 dbSNP
rs914789857 2221 dbSNP
rs1357127394 2224 dbSNP
rs536808877 2229 dbSNP
rs1275180200 2231 dbSNP
rs911452235 2241 dbSNP
rs989060240 2247 dbSNP
rs987375963 2250 dbSNP
rs955532443 2270 dbSNP
rs567881806 2273 dbSNP
rs972788301 2277 dbSNP
rs1320082044 2287 dbSNP
rs777628094 2289 dbSNP
rs1248311104 2290 dbSNP
rs1284845541 2297 dbSNP
rs981489812 2303 dbSNP
rs1227621122 2308 dbSNP
rs1287480662 2311 dbSNP
rs1466058605 2315 dbSNP
rs1208992114 2322 dbSNP
rs1016903401 2325 dbSNP
rs1247085154 2349 dbSNP
rs1444830224 2358 dbSNP
rs990813800 2367 dbSNP
rs970517407 2369 dbSNP
rs959555420 2373 dbSNP
rs1237494508 2381 dbSNP
rs547998922 2396 dbSNP
rs1161933008 2407 dbSNP
rs1410648687 2417 dbSNP
rs1003821603 2420 dbSNP
rs902347322 2426 dbSNP
rs1386806140 2427 dbSNP
rs1454766454 2428 dbSNP
rs1334947333 2434 dbSNP
rs1020743263 2447 dbSNP
rs527964264 2451 dbSNP
rs1282311496 2463 dbSNP
rs1331106404 2465 dbSNP
rs369160971 2473 dbSNP
rs1228823651 2484 dbSNP
rs1267254734 2487 dbSNP
rs1394543328 2493 dbSNP
rs1326710335 2495 dbSNP
rs1201751186 2497 dbSNP
rs1278748358 2500 dbSNP
rs887608651 2501 dbSNP
rs1166513477 2505 dbSNP
rs571947776 2506 dbSNP
rs1455537388 2528 dbSNP
rs118171418 2531 dbSNP
rs1473201161 2533 dbSNP
rs568437228 2545 dbSNP
rs893529336 2548 dbSNP
rs531599872 2550 dbSNP
rs993807067 2551 dbSNP
rs1038735877 2558 dbSNP
rs1244827600 2562 dbSNP
rs376524567 2588 dbSNP
rs1173339641 2589 dbSNP
rs943009601 2594 dbSNP
rs1452450421 2595 dbSNP
rs943065153 2598 dbSNP
rs757960888 2617 dbSNP
rs756523214 2624 dbSNP
rs1206927254 2637 dbSNP
rs1051344734 2642 dbSNP
rs1256275637 2648 dbSNP
rs1329010278 2649 dbSNP
rs1198295264 2650 dbSNP
rs946490572 2668 dbSNP
rs747702965 2673 dbSNP
rs914736100 2684 dbSNP
rs1435231083 2691 dbSNP
rs1200002943 2710 dbSNP
rs1377326469 2718 dbSNP
rs150861621 2725 dbSNP
rs918736518 2730 dbSNP
rs1430366216 2732 dbSNP
rs1307284716 2736 dbSNP
rs1368606860 2738 dbSNP
rs1388337338 2740 dbSNP
rs188952822 2743 dbSNP
rs1330209225 2744 dbSNP
rs1230537952 2749 dbSNP
rs1232035007 2749 dbSNP
rs14536 2749 dbSNP
rs1371315622 2751 dbSNP
rs750801284 2763 dbSNP
rs778668667 2768 dbSNP
rs879339918 2769 dbSNP
rs1489737804 2770 dbSNP
rs1432274406 2773 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gacCCUCAUACCCCCGUCCCu 5'
             | || | |  | ::||| 
Target 5' ---GAAGGA-GCUGUUGGGG- 3'
1 - 16
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000350997.7 | 3UTR | GAAGGAGCUGUUGGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
110 hsa-miR-6752-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT152341 TNFSF9 TNF superfamily member 9 2 2
MIRT273594 SP1 Sp1 transcription factor 2 2
MIRT291927 TPM4 tropomyosin 4 2 4
MIRT311186 ANKRD33B ankyrin repeat domain 33B 2 4
MIRT378521 CDKN1A cyclin dependent kinase inhibitor 1A 2 4
MIRT452467 SORCS2 sortilin related VPS10 domain containing receptor 2 2 2
MIRT478636 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT496343 TMEM81 transmembrane protein 81 2 2
MIRT496646 MFAP3 microfibril associated protein 3 2 2
MIRT496711 DNAJC30 DnaJ heat shock protein family (Hsp40) member C30 2 2
MIRT499242 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT519777 ZNF354B zinc finger protein 354B 2 6
MIRT520883 STX17 syntaxin 17 2 2
MIRT522476 ZAK mitogen-activated protein kinase kinase kinase 20 2 2
MIRT523587 G3BP2 G3BP stress granule assembly factor 2 2 6
MIRT525240 KCNJ12 potassium voltage-gated channel subfamily J member 12 2 2
MIRT527025 PABPN1L poly(A) binding protein nuclear 1 like, cytoplasmic 2 2
MIRT527709 IL17REL interleukin 17 receptor E like 2 2
MIRT530778 GPD1 glycerol-3-phosphate dehydrogenase 1 2 2
MIRT531883 SCN1B sodium voltage-gated channel beta subunit 1 2 2
MIRT533043 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT535062 PPP2R5D protein phosphatase 2 regulatory subunit B'delta 2 4
MIRT536512 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT543793 RALGAPB Ral GTPase activating protein non-catalytic beta subunit 2 2
MIRT563977 HCFC1 host cell factor C1 2 2
MIRT569472 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT570600 NFIX nuclear factor I X 2 2
MIRT571402 MED4 mediator complex subunit 4 2 2
MIRT608418 PPIC peptidylprolyl isomerase C 2 6
MIRT608928 REXO2 RNA exonuclease 2 2 4
MIRT609357 ZNF664 zinc finger protein 664 2 2
MIRT611189 WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 2 4
MIRT615266 DPF2 double PHD fingers 2 2 2
MIRT615408 VDAC2 voltage dependent anion channel 2 2 2
MIRT616323 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT616566 ZNF512B zinc finger protein 512B 2 2
MIRT616745 TAZ tafazzin 2 2
MIRT617316 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT620030 NFAM1 NFAT activating protein with ITAM motif 1 2 2
MIRT621166 RTTN rotatin 2 2
MIRT623501 KCNQ3 potassium voltage-gated channel subfamily Q member 3 2 2
MIRT623524 KCNK10 potassium two pore domain channel subfamily K member 10 2 2
MIRT629683 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 2
MIRT630795 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT634638 HIP1 huntingtin interacting protein 1 2 4
MIRT636788 RAB40B RAB40B, member RAS oncogene family 2 2
MIRT640332 DAAM2 dishevelled associated activator of morphogenesis 2 2 2
MIRT640557 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT643319 TMEM151B transmembrane protein 151B 2 2
MIRT643991 DUSP28 dual specificity phosphatase 28 2 2
MIRT644618 CD300E CD300e molecule 2 2
MIRT646445 XRCC2 X-ray repair cross complementing 2 2 2
MIRT648020 SLCO4C1 solute carrier organic anion transporter family member 4C1 2 2
MIRT648077 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT649618 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650414 ZNF442 zinc finger protein 442 2 2
MIRT650850 SEMA4G semaphorin 4G 2 2
MIRT654694 PSMB5 proteasome subunit beta 5 2 2
MIRT655512 PAIP2B poly(A) binding protein interacting protein 2B 2 2
MIRT657620 GRAP2 GRB2-related adaptor protein 2 2 2
MIRT658009 GALNT10 polypeptide N-acetylgalactosaminyltransferase 10 2 2
MIRT658329 FAM83F family with sequence similarity 83 member F 2 2
MIRT658832 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT658920 DPY19L4 dpy-19 like 4 2 2
MIRT661058 RPL18A ribosomal protein L18a 2 2
MIRT662342 MYLK3 myosin light chain kinase 3 2 2
MIRT663451 FBXO2 F-box protein 2 2 2
MIRT676752 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 4
MIRT684705 LRRD1 leucine rich repeats and death domain containing 1 2 2
MIRT687247 PDHB pyruvate dehydrogenase E1 beta subunit 2 2
MIRT693881 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT693922 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT695921 ZNF174 zinc finger protein 174 2 2
MIRT702867 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT708863 TMSB4X thymosin beta 4, X-linked 2 2
MIRT708936 CRY2 cryptochrome circadian clock 2 2 2
MIRT709476 FAXC failed axon connections homolog 2 2
MIRT709752 UBD ubiquitin D 2 2
MIRT710128 VANGL2 VANGL planar cell polarity protein 2 2 2
MIRT710274 FAM107A family with sequence similarity 107 member A 2 2
MIRT711146 TMEM174 transmembrane protein 174 2 2
MIRT712582 ATP2B4 ATPase plasma membrane Ca2+ transporting 4 2 2
MIRT712648 TXNL4A thioredoxin like 4A 2 2
MIRT713325 TMEM44 transmembrane protein 44 2 2
MIRT713413 PEX16 peroxisomal biogenesis factor 16 2 2
MIRT713891 RNF19B ring finger protein 19B 2 2
MIRT714549 COL14A1 collagen type XIV alpha 1 chain 2 2
MIRT714809 ARHGEF19 Rho guanine nucleotide exchange factor 19 2 2
MIRT714840 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT715779 DDX42 DEAD-box helicase 42 2 2
MIRT715795 TBL3 transducin beta like 3 2 2
MIRT716088 RNF150 ring finger protein 150 2 2
MIRT716712 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT716737 APOL6 apolipoprotein L6 2 2
MIRT717069 MTMR6 myotubularin related protein 6 2 2
MIRT718185 HLCS holocarboxylase synthetase 2 2
MIRT719386 SECTM1 secreted and transmembrane 1 2 2
MIRT720679 SLC39A13 solute carrier family 39 member 13 2 2
MIRT721315 FAM58A cyclin Q 2 2
MIRT721396 LDLRAD4 low density lipoprotein receptor class A domain containing 4 2 2
MIRT721896 ITPR2 inositol 1,4,5-trisphosphate receptor type 2 2 2
MIRT722442 ZBTB7B zinc finger and BTB domain containing 7B 2 2
MIRT723009 FADS1 fatty acid desaturase 1 2 2
MIRT723675 CTC1 CST telomere replication complex component 1 2 2
MIRT723774 ROBO4 roundabout guidance receptor 4 2 2
MIRT723814 OR1L8 olfactory receptor family 1 subfamily L member 8 2 2
MIRT723959 TMEM184A transmembrane protein 184A 2 2
MIRT724449 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT724798 C1D C1D nuclear receptor corepressor 2 2
MIRT725626 CAMKV CaM kinase like vesicle associated 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6752-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-6752-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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