pre-miRNA Information
pre-miRNA hsa-mir-500b   
Genomic Coordinates chrX: 50010672 - 50010750
Description Homo sapiens miR-500b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-500b-3p
Sequence 51| GCACCCAGGCAAGGAUUCUG |70
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs782140253 8 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CDCA4   
Synonyms HEPP, SEI-3/HEPP
Description cell division cycle associated 4
Transcript NM_017955   
Other Transcripts NM_145701   
Expression
Putative miRNA Targets on CDCA4
3'UTR of CDCA4
(miRNA target sites are highlighted)
>CDCA4|NM_017955|3'UTR
   1 GCAGGAGCCCTGAGTGCTCACAGCCGCCTCTGACGCATTGACACGTGAGCACTGGCTCCCACGGAGGGTGCGCCTGCCGC
  81 CAGCGGCCCAGCCTTGCTGCCCTGTCTGCTGATTCTGAGAAATCCCAGAACAGCCCATTACCAGTGGGGCTGCAGCCCTA
 161 GGCCCGTCCCACTCACCTCCCCCCTGTGGAGCGCCAGGCAGAGGCTGTTCTGGAAGGCTTCTTGTCTTCTGACGTCCCCA
 241 CAGCCCTGGGCCCCTCGTGTCTCTTTGTGTCCCCCACTGTAGAGGACGGTGAGCCGCAGCTGCATCAACCTCCTTTTACC
 321 TTTAGATAGGTGAATTTTTACAATTCAGTTTTACATGTTTTGGGCAGTATTTTGTCTTAAGATATATTTTTTAAACTTTT
 401 TATACCTTATCTCTTTAGATTTTTTCAGCTATTTTCTTAAAAGTATATTTTTTCTATAAACATCCTTTGCTGCTACATTA
 481 GAACTTTTATAGCCTAAACAATTGCAGTTGGTGTGTTTCATTTTTTTAAGGTTTAAATAAGGGTTTTTTGTTTTGTTTTG
 561 TTTTTTGCAGTGAGCATCACTACAGTCTCAGTCAACAGTGTGAATGTATCATGTTTTACTTTAAATGTGTGTGTGATACT
 641 TCTTCATTATGTCCTGCGCTGCAGTGAGACCTGGGTGAAAATCAGGAGCCGCACACAGCCACATCTTCCTAGACCTAAGA
 721 GTAAATTATGGAGGATTTTATTTATGTCTATTTATATGTAAATGTCATTGAAGACAAAGGTCAAATATTTGTCTGTTTGT
 801 AGATCACAGGCACCAGTTGGTCTTCAGGGACCTCATAGCCCCTCGGTGGTGCCTTCTCAAGGCAGTGTTCCTGGAGGCTC
 881 CCATCAGGGTCAGCCCATGCACCTGCCCTGGGTGAGGAAGTAGCATTGCTGCTGGATGAGAAACGCCTGCGCTGCTCTGT
 961 TAGACTGGTGCTGAAACAAAAGGTTAAGGCTAGGTTGAAGTCTAGAATGAAAGAAATCTGAATCCATGTCATTCATAACC
1041 CCTTGATCTGTAGTGTCATGGGTGCTGCCGCAGGCAGGGAGTGAGCTGGGGGTGCCTGCAGCCTTCCACTCCTGCCCCGC
1121 CTCACCCCACATGCTCCCTGTTTCTCATGCTTTCTCTAACTTCCTCACCCCTTAACCAAAAAGGTGTGTTTTCTTTTGTG
1201 CATATAGCCATTCTTAAATATCAGTGATGTAAACCTCACTTTATTAAAAAATTATCCAGCAAACAAAATGGGAATGTGGT
1281 GTTAGTTACGACCACGGCCTGACCCTCCAGCAACCTTTCTGCAGGATCAGTTCTGCTGTATTATCTGGTGGTGCTTTCTA
1361 AGGTGGGGAAAGGAATTGCACTTGGCTGCATTAAATGGACGCTGGGTTACTTTTATTTCCCCCCCCCACAGGGTTGCAGA
1441 GCAAATTCTTTTTACATTGTTCAGCGCCCGGCTGGAGTTGGGGGTGTCCACGACCTCTGACAGCCCCCGATGTCGAAAGT
1521 TAATCCTCATGGACCCTAGTTTAAAGGGTATGTGTTTTATAGGAATAAATCTAAAGCACTATTTTGTTTCTGTATAGCAT
1601 TTTTATCTTTTAGAAACATCATTTGTTCAGC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gucuuaGGAACGGACCCACg 5'
                |||  |||||||| 
Target 5' catgcaCCTGCCCTGGGTGa 3'
896 - 915 154.00 -20.20
2
miRNA  3' gucuuaggaacGGACCCACg 5'
                     |||||||| 
Target 5' ctgcagtgagaCCTGGGTGa 3'
659 - 678 145.00 -17.32
3
miRNA  3' guCUUAGGAACG--GACCCACg 5'
            | | | ||||  |||| || 
Target 5' aaGTAGCATTGCTGCTGGATGa 3'
918 - 939 124.00 -9.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31957950 7 COSMIC
COSN31490513 19 COSMIC
COSN31595410 47 COSMIC
COSN20077974 125 COSMIC
COSN24206927 183 COSMIC
COSN8822655 346 COSMIC
COSN31528560 381 COSMIC
COSN31483504 387 COSMIC
COSN31568312 436 COSMIC
COSN31606625 481 COSMIC
COSN30168298 519 COSMIC
COSN30541108 549 COSMIC
COSN28627582 858 COSMIC
COSN20111772 870 COSMIC
COSN16132295 908 COSMIC
COSN31592676 950 COSMIC
COSN30545319 1018 COSMIC
COSN31528568 1026 COSMIC
COSN21507148 1289 COSMIC
COSN8139853 1327 COSMIC
COSN20111768 1419 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1474009417 3 dbSNP
rs780214147 4 dbSNP
rs756536228 5 dbSNP
rs750914995 7 dbSNP
rs1384883486 8 dbSNP
rs879187818 9 dbSNP
rs768060971 11 dbSNP
rs757295904 12 dbSNP
rs1331485231 16 dbSNP
rs751554074 19 dbSNP
rs764258674 25 dbSNP
rs182286629 26 dbSNP
rs775788833 27 dbSNP
rs1219784061 31 dbSNP
rs989959277 32 dbSNP
rs7144401 34 dbSNP
rs760607947 35 dbSNP
rs773265032 43 dbSNP
rs547608078 44 dbSNP
rs761861164 45 dbSNP
rs527910747 47 dbSNP
rs768213620 49 dbSNP
rs1381611292 56 dbSNP
rs1347277337 59 dbSNP
rs539069805 63 dbSNP
rs1299178869 65 dbSNP
rs548907771 67 dbSNP
rs998776989 71 dbSNP
rs528833536 72 dbSNP
rs1280006585 78 dbSNP
rs570416062 79 dbSNP
rs1202197444 80 dbSNP
rs1242859177 82 dbSNP
rs1030252092 84 dbSNP
rs774027690 85 dbSNP
rs997568633 86 dbSNP
rs900569504 91 dbSNP
rs1039074140 93 dbSNP
rs770454069 99 dbSNP
rs1358316153 100 dbSNP
rs1334457443 111 dbSNP
rs749696134 116 dbSNP
rs1435532710 126 dbSNP
rs1322199020 131 dbSNP
rs1226104814 134 dbSNP
rs1274876147 148 dbSNP
rs1347772739 149 dbSNP
rs1299975268 156 dbSNP
rs1420180198 165 dbSNP
rs147341834 166 dbSNP
rs1465677392 168 dbSNP
rs35300947 171 dbSNP
rs929534439 172 dbSNP
rs142710447 183 dbSNP
rs1481378355 186 dbSNP
rs762150612 187 dbSNP
rs372956387 189 dbSNP
rs10131315 192 dbSNP
rs533847771 198 dbSNP
rs1381249180 204 dbSNP
rs1323652692 206 dbSNP
rs541210751 210 dbSNP
rs1477055810 233 dbSNP
rs1265738151 234 dbSNP
rs1283263736 238 dbSNP
rs1330388347 250 dbSNP
rs1230657817 254 dbSNP
rs957469389 256 dbSNP
rs192042242 257 dbSNP
rs572311132 259 dbSNP
rs1269729226 261 dbSNP
rs560987283 267 dbSNP
rs769120614 267 dbSNP
rs555695797 269 dbSNP
rs1472851913 274 dbSNP
rs748662077 287 dbSNP
rs1361782747 288 dbSNP
rs1452784655 294 dbSNP
rs955285772 295 dbSNP
rs1367027173 296 dbSNP
rs535744255 300 dbSNP
rs997494904 304 dbSNP
rs900495461 308 dbSNP
rs1017674434 311 dbSNP
rs1373344088 315 dbSNP
rs1305312874 318 dbSNP
rs1335609766 320 dbSNP
rs1245966645 322 dbSNP
rs1006303155 330 dbSNP
rs1357508101 337 dbSNP
rs1345801165 342 dbSNP
rs138703543 354 dbSNP
rs1225442645 355 dbSNP
rs1275371942 357 dbSNP
rs34252654 361 dbSNP
rs1248313771 362 dbSNP
rs1418334734 385 dbSNP
rs1187962745 387 dbSNP
rs1047856840 391 dbSNP
rs1422309414 393 dbSNP
rs929562396 395 dbSNP
rs371705717 396 dbSNP
rs1400359153 413 dbSNP
rs1370562051 419 dbSNP
rs539521443 421 dbSNP
rs1463063693 426 dbSNP
rs907431465 434 dbSNP
rs1332111511 436 dbSNP
rs570592653 450 dbSNP
rs1397012373 453 dbSNP
rs1317556973 454 dbSNP
rs1380877706 456 dbSNP
rs777866055 460 dbSNP
rs150531784 461 dbSNP
rs1415689524 473 dbSNP
rs1045997503 475 dbSNP
rs780353783 477 dbSNP
rs1166990166 488 dbSNP
rs948397327 490 dbSNP
rs1249587467 496 dbSNP
rs531912931 502 dbSNP
rs1244684850 504 dbSNP
rs1194904411 511 dbSNP
rs1442396228 537 dbSNP
rs1182668081 541 dbSNP
rs534119372 543 dbSNP
rs1167658904 550 dbSNP
rs745420532 550 dbSNP
rs199789276 555 dbSNP
rs1466955604 558 dbSNP
rs568364703 561 dbSNP
rs1272314823 563 dbSNP
rs1321525156 565 dbSNP
rs1452357986 565 dbSNP
rs922548417 565 dbSNP
rs145879272 567 dbSNP
rs1258937640 569 dbSNP
rs367915246 570 dbSNP
rs1212914840 574 dbSNP
rs75543247 576 dbSNP
rs1306860310 583 dbSNP
rs78187215 586 dbSNP
rs1006724971 587 dbSNP
rs554227927 589 dbSNP
rs1202767608 590 dbSNP
rs1248299956 597 dbSNP
rs1486619004 598 dbSNP
rs763808464 600 dbSNP
rs1418085821 610 dbSNP
rs1433266251 611 dbSNP
rs1179287589 615 dbSNP
rs952133660 633 dbSNP
rs1026918765 634 dbSNP
rs1160313985 641 dbSNP
rs1347204211 642 dbSNP
rs1288365372 646 dbSNP
rs1428821597 646 dbSNP
rs1368481342 655 dbSNP
rs1406830924 656 dbSNP
rs1443914936 656 dbSNP
rs549726241 657 dbSNP
rs553852743 658 dbSNP
rs1284630555 672 dbSNP
rs3204172 688 dbSNP
rs1213297314 689 dbSNP
rs541174068 690 dbSNP
rs1411998532 691 dbSNP
rs752663498 694 dbSNP
rs1165531075 705 dbSNP
rs1480369269 709 dbSNP
rs1183368983 714 dbSNP
rs1410533022 714 dbSNP
rs1399317313 719 dbSNP
rs1158726996 732 dbSNP
rs1350660274 753 dbSNP
rs1426664199 758 dbSNP
rs1473388943 765 dbSNP
rs1301325512 776 dbSNP
rs1343587624 787 dbSNP
rs766980847 789 dbSNP
rs907357876 791 dbSNP
rs878865341 795 dbSNP
rs759121130 797 dbSNP
rs1176915285 801 dbSNP
rs754705233 810 dbSNP
rs1221840604 817 dbSNP
rs1283169712 818 dbSNP
rs1459141392 825 dbSNP
rs572224823 826 dbSNP
rs894151455 828 dbSNP
rs1288889364 831 dbSNP
rs1490330560 837 dbSNP
rs1183248698 838 dbSNP
rs561929473 839 dbSNP
rs1235087591 841 dbSNP
rs1468969332 844 dbSNP
rs1309816866 845 dbSNP
rs770632710 848 dbSNP
rs1054095668 849 dbSNP
rs935764885 857 dbSNP
rs1365111576 858 dbSNP
rs35398729 872 dbSNP
rs1041843431 882 dbSNP
rs3204173 883 dbSNP
rs1439793375 885 dbSNP
rs773780496 886 dbSNP
rs1383090630 887 dbSNP
rs1247630353 897 dbSNP
rs1357032291 899 dbSNP
rs770271144 904 dbSNP
rs933858371 905 dbSNP
rs1308423332 914 dbSNP
rs1237405954 928 dbSNP
rs1195848200 935 dbSNP
rs1378386983 936 dbSNP
rs1331625275 939 dbSNP
rs1436532814 942 dbSNP
rs922435224 944 dbSNP
rs1244062146 945 dbSNP
rs1439642928 947 dbSNP
rs368492638 950 dbSNP
rs1182043831 951 dbSNP
rs1384825746 956 dbSNP
rs374533227 960 dbSNP
rs1475807960 962 dbSNP
rs1325992738 964 dbSNP
rs1421595638 968 dbSNP
rs963895085 989 dbSNP
rs1407980543 992 dbSNP
rs1406628944 999 dbSNP
rs757863353 1016 dbSNP
rs1157313308 1017 dbSNP
rs1381546530 1019 dbSNP
rs556215126 1033 dbSNP
rs910565052 1039 dbSNP
rs539434200 1048 dbSNP
rs1193279242 1050 dbSNP
rs1264293043 1057 dbSNP
rs748714989 1058 dbSNP
rs1242801431 1060 dbSNP
rs576869829 1061 dbSNP
rs952124377 1061 dbSNP
rs1026428753 1069 dbSNP
rs1223573475 1070 dbSNP
rs1240364983 1070 dbSNP
rs749872971 1072 dbSNP
rs993982047 1075 dbSNP
rs971597505 1083 dbSNP
rs1285221552 1091 dbSNP
rs1214282535 1093 dbSNP
rs1355255204 1094 dbSNP
rs1173933478 1095 dbSNP
rs1309303728 1106 dbSNP
rs1382379221 1107 dbSNP
rs981992139 1108 dbSNP
rs553849247 1116 dbSNP
rs1024443064 1118 dbSNP
rs1284533536 1119 dbSNP
rs1276245224 1132 dbSNP
rs1013183597 1143 dbSNP
rs185742659 1146 dbSNP
rs1437635827 1147 dbSNP
rs894704113 1156 dbSNP
rs1207188502 1157 dbSNP
rs1360226977 1158 dbSNP
rs1055096880 1176 dbSNP
rs1200193751 1177 dbSNP
rs765802708 1184 dbSNP
rs769003045 1186 dbSNP
rs528481170 1190 dbSNP
rs1197025260 1195 dbSNP
rs1376786580 1196 dbSNP
rs902837416 1200 dbSNP
rs747134004 1202 dbSNP
rs777031277 1204 dbSNP
rs1361701727 1213 dbSNP
rs1418601205 1223 dbSNP
rs1303183411 1227 dbSNP
rs370909400 1229 dbSNP
rs1431502454 1234 dbSNP
rs1427603663 1235 dbSNP
rs1283202098 1252 dbSNP
rs1336782350 1259 dbSNP
rs1191919167 1267 dbSNP
rs1041506149 1272 dbSNP
rs1478239724 1279 dbSNP
rs1049385073 1282 dbSNP
rs1293964322 1289 dbSNP
rs199717135 1289 dbSNP
rs538927940 1289 dbSNP
rs758621914 1290 dbSNP
rs555164640 1295 dbSNP
rs1489252812 1296 dbSNP
rs1183676356 1297 dbSNP
rs1361732883 1303 dbSNP
rs1438632077 1310 dbSNP
rs777599020 1313 dbSNP
rs935492604 1316 dbSNP
rs909824426 1320 dbSNP
rs1366972062 1325 dbSNP
rs764336778 1336 dbSNP
rs984432692 1337 dbSNP
rs538082895 1343 dbSNP
rs12891636 1344 dbSNP
rs1397796220 1350 dbSNP
rs755877636 1355 dbSNP
rs1179191064 1358 dbSNP
rs982172397 1369 dbSNP
rs1376451160 1381 dbSNP
rs752397706 1384 dbSNP
rs1246895778 1386 dbSNP
rs971611290 1390 dbSNP
rs114742941 1394 dbSNP
rs1357444928 1395 dbSNP
rs552634982 1398 dbSNP
rs1264829002 1399 dbSNP
rs972147261 1400 dbSNP
rs971440356 1401 dbSNP
rs1024493778 1404 dbSNP
rs952774831 1406 dbSNP
rs370427729 1416 dbSNP
rs1386681729 1417 dbSNP
rs1026902037 1418 dbSNP
rs1163413686 1419 dbSNP
rs200588118 1419 dbSNP
rs994431102 1421 dbSNP
rs1276747184 1422 dbSNP
rs896975352 1424 dbSNP
rs1019839017 1425 dbSNP
rs532954014 1426 dbSNP
rs377617161 1427 dbSNP
rs11314009 1428 dbSNP
rs1459662561 1428 dbSNP
rs367552433 1428 dbSNP
rs58203562 1428 dbSNP
rs869129381 1428 dbSNP
rs902849463 1428 dbSNP
rs547475463 1430 dbSNP
rs527398900 1432 dbSNP
rs1177080425 1439 dbSNP
rs561705054 1448 dbSNP
rs1421717861 1449 dbSNP
rs1178975683 1452 dbSNP
rs1246531114 1459 dbSNP
rs1447494204 1460 dbSNP
rs1039411324 1462 dbSNP
rs1289662045 1465 dbSNP
rs942567754 1466 dbSNP
rs1380583612 1468 dbSNP
rs888269579 1469 dbSNP
rs947032940 1470 dbSNP
rs7155932 1476 dbSNP
rs1310079854 1477 dbSNP
rs1054026427 1480 dbSNP
rs935552217 1481 dbSNP
rs1209071669 1482 dbSNP
rs1263819350 1485 dbSNP
rs1181153112 1491 dbSNP
rs751087709 1492 dbSNP
rs1046511472 1496 dbSNP
rs570941999 1503 dbSNP
rs765984550 1505 dbSNP
rs141696678 1508 dbSNP
rs762753829 1509 dbSNP
rs544744125 1511 dbSNP
rs1427724607 1514 dbSNP
rs916658249 1515 dbSNP
rs917365823 1522 dbSNP
rs1451757564 1529 dbSNP
rs1297600378 1534 dbSNP
rs991561729 1536 dbSNP
rs958939319 1539 dbSNP
rs1285109163 1547 dbSNP
rs12892633 1550 dbSNP
rs1133629 1554 dbSNP
rs1307312992 1560 dbSNP
rs919866472 1576 dbSNP
rs1213845262 1581 dbSNP
rs28589417 1596 dbSNP
rs1490369346 1599 dbSNP
rs576783304 1600 dbSNP
rs1245466903 1603 dbSNP
rs1398452572 1623 dbSNP
rs1178102289 1626 dbSNP
rs1410462347 1628 dbSNP
rs1019466316 1629 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gucuuaggaacgGACCCACg 5'
                      ||||||| 
Target 5' ------------CUGGGUGa 3'
1 - 8
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000336219.3 | 3UTR | CUGGGUGAGGAAGUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
172 hsa-miR-500b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059905 HDGF heparin binding growth factor 2 4
MIRT235394 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 4
MIRT442246 PYGO1 pygopus family PHD finger 1 2 2
MIRT443591 ZNF439 zinc finger protein 439 2 4
MIRT453280 EFTUD2 elongation factor Tu GTP binding domain containing 2 2 2
MIRT463540 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT465589 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT469462 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT485449 KCTD15 potassium channel tetramerization domain containing 15 2 4
MIRT486682 WDR81 WD repeat domain 81 2 2
MIRT489078 POLM DNA polymerase mu 2 2
MIRT493734 GREM2 gremlin 2, DAN family BMP antagonist 2 2
MIRT494872 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT496130 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT496489 CHMP3 charged multivesicular body protein 3 2 2
MIRT496924 CLMN calmin 2 2
MIRT497297 TMEM119 transmembrane protein 119 2 2
MIRT499103 AGRN agrin 2 2
MIRT508979 CXorf38 chromosome X open reading frame 38 2 2
MIRT509911 NIPAL1 NIPA like domain containing 1 2 2
MIRT512820 ARRDC2 arrestin domain containing 2 2 4
MIRT512827 KBTBD6 kelch repeat and BTB domain containing 6 2 4
MIRT515360 MRPL52 mitochondrial ribosomal protein L52 2 2
MIRT516610 TRIM58 tripartite motif containing 58 2 2
MIRT517053 TLDC1 TBC/LysM-associated domain containing 1 2 2
MIRT517637 ZNF491 zinc finger protein 491 2 2
MIRT518270 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT518625 STAR steroidogenic acute regulatory protein 2 2
MIRT518887 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT519026 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT520365 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT521106 SLC1A5 solute carrier family 1 member 5 2 2
MIRT521943 PHC3 polyhomeotic homolog 3 2 2
MIRT522253 NPEPPS aminopeptidase puromycin sensitive 2 2
MIRT522853 KIAA1551 KIAA1551 2 2
MIRT522868 KIAA1549 KIAA1549 2 2
MIRT524207 DDX19B DEAD-box helicase 19B 2 2
MIRT526004 ARHGAP27 Rho GTPase activating protein 27 2 2
MIRT527769 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT527827 TMEM74B transmembrane protein 74B 2 2
MIRT527861 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT528040 WT1 Wilms tumor 1 2 2
MIRT529802 ZDHHC8 zinc finger DHHC-type containing 8 2 2
MIRT531723 TARS threonyl-tRNA synthetase 2 2
MIRT531996 BARD1 BRCA1 associated RING domain 1 2 2
MIRT533338 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT533621 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT533652 TMOD2 tropomodulin 2 2 2
MIRT534397 SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 2 2
MIRT538686 CCDC80 coiled-coil domain containing 80 2 2
MIRT540444 RBM43 RNA binding motif protein 43 2 2
MIRT542586 ZC3H12C zinc finger CCCH-type containing 12C 2 8
MIRT542796 PLEKHA3 pleckstrin homology domain containing A3 2 4
MIRT542991 ERC1 ELKS/RAB6-interacting/CAST family member 1 2 2
MIRT544424 ZNF460 zinc finger protein 460 2 4
MIRT545740 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 2 4
MIRT552618 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT554456 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT569663 PRIM1 DNA primase subunit 1 2 2
MIRT569924 PCSK9 proprotein convertase subtilisin/kexin type 9 2 2
MIRT570140 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT573558 TMEM120B transmembrane protein 120B 2 2
MIRT574282 OPRD1 opioid receptor delta 1 2 2
MIRT575335 Fbxo6 F-box protein 6 2 2
MIRT607057 IDS iduronate 2-sulfatase 2 2
MIRT607078 POM121L7 POM121 transmembrane nucleoporin like 7 pseudogene 2 2
MIRT607500 HEBP2 heme binding protein 2 2 2
MIRT607530 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT607808 RHBDL2 rhomboid like 2 2 2
MIRT608079 ZFP14 ZFP14 zinc finger protein 2 2
MIRT609119 NUDT3 nudix hydrolase 3 2 2
MIRT609745 PTCH1 patched 1 2 2
MIRT612904 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 2
MIRT618720 PCSK2 proprotein convertase subtilisin/kexin type 2 2 2
MIRT618778 HLA-E major histocompatibility complex, class I, E 2 2
MIRT619015 SLC2A6 solute carrier family 2 member 6 2 2
MIRT623223 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT623819 GEMIN6 gem nuclear organelle associated protein 6 2 2
MIRT625704 OPTN optineurin 2 2
MIRT626437 CHDH choline dehydrogenase 2 2
MIRT628087 KAT7 lysine acetyltransferase 7 2 2
MIRT628936 APOB apolipoprotein B 2 2
MIRT633543 PGBD5 piggyBac transposable element derived 5 2 2
MIRT634348 SGOL1 shugoshin 1 2 2
MIRT634611 KIAA1919 major facilitator superfamily domain containing 4B 2 2
MIRT635243 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT636681 BTLA B and T lymphocyte associated 2 2
MIRT636923 ZNF845 zinc finger protein 845 2 2
MIRT637606 ZNF554 zinc finger protein 554 2 2
MIRT639242 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT640835 POLR3A RNA polymerase III subunit A 2 2
MIRT642098 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT643087 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT643934 C17orf104 meiosis specific with coiled-coil domain 2 2
MIRT644353 FXN frataxin 2 2
MIRT645628 SF3A3 splicing factor 3a subunit 3 2 2
MIRT645754 FAM213A family with sequence similarity 213 member A 2 2
MIRT646329 MVB12B multivesicular body subunit 12B 2 2
MIRT646817 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT647019 ADCY2 adenylate cyclase 2 2 2
MIRT647621 IGSF9B immunoglobulin superfamily member 9B 2 2
MIRT648517 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT648871 ABCA6 ATP binding cassette subfamily A member 6 2 2
MIRT649620 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650062 CCDC134 coiled-coil domain containing 134 2 2
MIRT650734 TNFSF8 TNF superfamily member 8 2 2
MIRT652389 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT654352 RBM27 RNA binding motif protein 27 2 2
MIRT655796 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT657329 HNRNPK heterogeneous nuclear ribonucleoprotein K 2 2
MIRT657734 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT660613 ANO6 anoctamin 6 2 2
MIRT661243 ARL17B ADP ribosylation factor like GTPase 17B 2 2
MIRT662245 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662921 MED18 mediator complex subunit 18 2 2
MIRT662963 JPH2 junctophilin 2 2 2
MIRT663347 ZNF74 zinc finger protein 74 2 2
MIRT663528 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT663547 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663977 ZNF786 zinc finger protein 786 2 2
MIRT664084 METTL2B methyltransferase like 2B 2 2
MIRT664358 C16orf45 chromosome 16 open reading frame 45 2 2
MIRT664421 TIGD6 tigger transposable element derived 6 2 2
MIRT664476 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT664979 TDRD1 tudor domain containing 1 2 2
MIRT665128 PYCRL pyrroline-5-carboxylate reductase 3 2 2
MIRT666259 SLC31A1 solute carrier family 31 member 1 2 2
MIRT666321 SLC16A10 solute carrier family 16 member 10 2 2
MIRT666881 POLQ DNA polymerase theta 2 2
MIRT668469 FADS6 fatty acid desaturase 6 2 2
MIRT669554 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT669835 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT670185 CCDC142 coiled-coil domain containing 142 2 2
MIRT672020 PXMP4 peroxisomal membrane protein 4 2 2
MIRT672070 KIAA0930 KIAA0930 2 2
MIRT672475 RTTN rotatin 2 2
MIRT672851 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT673090 AK1 adenylate kinase 1 2 2
MIRT673581 KDELC2 KDEL motif containing 2 2 2
MIRT674586 SLC35B4 solute carrier family 35 member B4 2 2
MIRT675001 STRN3 striatin 3 2 2
MIRT679018 MTMR10 myotubularin related protein 10 2 2
MIRT679680 STAT3 signal transducer and activator of transcription 3 2 2
MIRT682833 FLG2 filaggrin family member 2 2 2
MIRT682886 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT683442 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 2
MIRT687040 RNF115 ring finger protein 115 2 2
MIRT691957 RHOH ras homolog family member H 2 2
MIRT694625 ZFPM1 zinc finger protein, FOG family member 1 2 2
MIRT695637 SLC26A2 solute carrier family 26 member 2 2 2
MIRT697640 WRN Werner syndrome RecQ like helicase 2 2
MIRT702009 MIDN midnolin 2 2
MIRT702034 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT704789 CDK6 cyclin dependent kinase 6 2 2
MIRT705728 AMMECR1L AMMECR1 like 2 2
MIRT705879 ADM adrenomedullin 2 2
MIRT706220 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT708418 CERS4 ceramide synthase 4 2 2
MIRT709114 C3orf18 chromosome 3 open reading frame 18 2 2
MIRT709595 ITPA inosine triphosphatase 2 2
MIRT710945 MRPL45 mitochondrial ribosomal protein L45 2 2
MIRT712345 NLN neurolysin 2 2
MIRT712530 CYTH2 cytohesin 2 2 2
MIRT714019 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT717287 ARMC12 armadillo repeat containing 12 2 2
MIRT717733 FGF1 fibroblast growth factor 1 2 2
MIRT718083 CLIC5 chloride intracellular channel 5 2 2
MIRT718562 MUC20 mucin 20, cell surface associated 2 2
MIRT721639 MYLK3 myosin light chain kinase 3 2 2
MIRT722632 C8A complement C8 alpha chain 2 2
MIRT723177 CDCA4 cell division cycle associated 4 2 2
MIRT725523 FAM229B family with sequence similarity 229 member B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-500b Methotrexate 126941 NSC740 approved resistant cell line (W1)
hsa-miR-500b-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-500b-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

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