miRTarBase - #MIRT723308


—
pre-miRNA Information
pre-miRNA hsa-mir-1343   
Genomic Coordinates chr11: 34941837 - 34941920
Description Homo sapiens miR-1343 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1343-3p
Sequence 52| CUCCUGGGGCCCGCACUCUCGC |73
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30640426 13 COSMIC
COSN32131883 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1030024806 10 dbSNP
rs568333985 11 dbSNP
rs1335261302 13 dbSNP
rs1228966720 17 dbSNP
rs950497159 20 dbSNP
rs748356067 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PRKCH   
Synonyms PKC-L, PKCL, PRKCL, nPKC-eta
Description protein kinase C eta
Transcript NM_006255   
Expression
Putative miRNA Targets on PRKCH
3'UTR of PRKCH
(miRNA target sites are highlighted)		 
>PRKCH|NM_006255|3'UTR
   1 CCTTATGGGGAGTGAGAGAGAGGGCACGAGAACCCAAAGGGAATAGAGATTCTCCAGGAATTTCCTCTATGGGACCTTCC
  81 CAGCATCAGCCTTAGAACAAGAACCTTACCTTCAAGGAGCAAGTGAAGAACTCTGTGAAGGATGGAACTTTCAGATATCA
 161 ACTATTTAGAGTCCAGAGGGAGCCATGGCACTAGAAATAGTTGATAATGAAATGAGATTTTATGAAGTATACCGCTCCAC
 241 CTATGAGCGTCTGTCTCTGTGGGCTTGGGATGTTAACAGGAGCCAAAAGGAGGGAAAGTGTGAAGAATAAAGTAGATCTG
 321 AGAAATTCTGAGCCAATCAGGCTTCTTAATTCAAGAGACAAACCAAGACGTTCTGTCAACTGTGCTGTGCTCTTCTTTAA
 401 GCCAATGAACCCCAATTCCTGGCAGTCTACAAGAAGTCTCTTAATGCTAATGAAGAATTTAAAGGTCTTTTTAAGGAAAT
 481 GAAGGGCTTTCCAAATAGAATGATTTACTCTGAAGAAACAAACAATGGTATCTCTGAAACTCACAACCTAAAGCCCAATC
 561 TTGAAAATATGTTGTGCACCAAGACGACTGCTTCAGCTTCTTCTCTTATCCTTACTTTCTTTAATAGATATTTATTAAAC
 641 TGTCCAGTGAAAAGGTGCCACAATGCCCAGTATTGTAAACAACAGGTTTGCATTCATGAAGCTTTCATTCATTCTGGAGT
 721 CTACTAATTTACCTGAATGGTGTTTGCATTCTGTGAAATGCCTCTCCACGTTGCATATGTCACACTTTTGTCTGCACATA
 801 ACTCTTTTTTCACAAGAAGGGTCACTGCCACAACAGCACAGTCAGCGGGTGAATTACAGGTGCCTGCTGCCTGCCTACCT
 881 GGGTAATCTGATCTTGTCTGTATCGCCGTGTGCTCATCACTGAAGAATTGCAGGCCACTCATGTCAGTGACCAGATTTGT
 961 GGCTTATAAACATTAGCAGTTTATTTATGTTTTAAGATGCAAAGATGTGTGTTTGATATTCACTTTAATAATTAGAAATG
1041 GATCTTGTAAACAGGGCATATATCAAAGATGACCTTATAATATGTACCCGAATATACAGTTCAAGAATTTTGTCTGACTG
1121 GAAATAAATGCATTTTGTAGCAAAAGGAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgCUCUCACGCCCGGGGUCCUc 5'
            |||| |     |:|||||| 
Target 5' taGAGATT-----CTCCAGGAa 3'
 44 - 60 135.00 -13.90
2 
miRNA  3' cgcucucACGCCC----GGGGUCCUc 5'
                 | :|||    :||||| | 
Target 5' tttcctcTATGGGACCTTCCCAGCAt 3'
 61 - 86 113.00 -12.92
3 
miRNA  3' cgcucucACGCCCGGGGUCCUc 5'
                 ||:||| |:::||| 
Target 5' ctgtctcTGTGGG-CTTGGGAt 3'
 251 - 271 110.00 -15.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM1559431 1 COSMIC
COSN30529881 10 COSMIC
COSN26990390 45 COSMIC
COSN30483073 56 COSMIC
COSN31608774 65 COSMIC
COSN30128160 69 COSMIC
COSN6255574 316 COSMIC
COSN8155766 370 COSMIC
COSN21683648 509 COSMIC
COSN31556626 643 COSMIC
COSN16131285 696 COSMIC
COSN23726489 771 COSMIC
COSN19240685 790 COSMIC
COSN4620984 794 COSMIC
COSN22808384 810 COSMIC
COSN19660247 848 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs746338371 1 dbSNP
rs1306647058 2 dbSNP
rs1267784284 3 dbSNP
rs576261679 3 dbSNP
rs1362110999 4 dbSNP
rs922337817 11 dbSNP
rs1224962991 13 dbSNP
rs1253050141 14 dbSNP
rs758441852 15 dbSNP
rs780151655 17 dbSNP
rs747251270 21 dbSNP
rs768993285 23 dbSNP
rs1231226779 24 dbSNP
rs776926132 25 dbSNP
rs1262732103 28 dbSNP
rs377162788 29 dbSNP
rs1172943757 31 dbSNP
rs1374194198 32 dbSNP
rs1021446742 38 dbSNP
rs769660059 42 dbSNP
rs1162408666 44 dbSNP
rs1406982221 44 dbSNP
rs1363090812 45 dbSNP
rs1368887572 45 dbSNP
rs1406406943 47 dbSNP
rs1303451900 48 dbSNP
rs561409004 62 dbSNP
rs941241297 66 dbSNP
rs545360045 68 dbSNP
rs1139537 72 dbSNP
rs1226471587 78 dbSNP
rs530194166 82 dbSNP
rs549934262 84 dbSNP
rs1420198023 91 dbSNP
rs371217143 99 dbSNP
rs1038241149 101 dbSNP
rs1308928480 106 dbSNP
rs1427971477 112 dbSNP
rs570053967 114 dbSNP
rs1317289354 121 dbSNP
rs1004117738 132 dbSNP
rs897007705 134 dbSNP
rs929754460 138 dbSNP
rs1438733538 143 dbSNP
rs1275773267 147 dbSNP
rs532368189 155 dbSNP
rs1323000039 162 dbSNP
rs1255642765 163 dbSNP
rs1305871341 174 dbSNP
rs552460201 177 dbSNP
rs1279138017 179 dbSNP
rs773723239 183 dbSNP
rs959536177 189 dbSNP
rs1258257875 190 dbSNP
rs1354890980 208 dbSNP
rs1330884159 213 dbSNP
rs1468180319 219 dbSNP
rs1405175268 228 dbSNP
rs1176557622 231 dbSNP
rs1483044804 231 dbSNP
rs1481102495 233 dbSNP
rs1405399339 234 dbSNP
rs186747183 234 dbSNP
rs1253195493 235 dbSNP
rs1470756976 236 dbSNP
rs1027931905 237 dbSNP
rs1182070777 238 dbSNP
rs952467878 244 dbSNP
rs147866383 246 dbSNP
rs1205675113 248 dbSNP
rs1031190170 249 dbSNP
rs1173769586 257 dbSNP
rs77292187 267 dbSNP
rs1224528178 268 dbSNP
rs1440015308 270 dbSNP
rs1311185354 272 dbSNP
rs1299799668 276 dbSNP
rs976243658 278 dbSNP
rs1337283388 282 dbSNP
rs943762475 296 dbSNP
rs567053577 300 dbSNP
rs1280865631 302 dbSNP
rs1342924495 302 dbSNP
rs1400949699 304 dbSNP
rs1409621621 333 dbSNP
rs1373895346 338 dbSNP
rs1029861498 356 dbSNP
rs1244349460 357 dbSNP
rs976477227 370 dbSNP
rs921070371 371 dbSNP
rs190423699 379 dbSNP
rs1298870737 380 dbSNP
rs1241610405 382 dbSNP
rs1216504210 385 dbSNP
rs1318983838 389 dbSNP
rs1243558980 391 dbSNP
rs777314152 391 dbSNP
rs1053614225 403 dbSNP
rs555953665 406 dbSNP
rs1346023052 409 dbSNP
rs893754229 416 dbSNP
rs940979014 431 dbSNP
rs1359711896 439 dbSNP
rs1287790025 441 dbSNP
rs139998788 458 dbSNP
rs544633392 461 dbSNP
rs1362093230 466 dbSNP
rs906530780 468 dbSNP
rs918470917 469 dbSNP
rs762499285 480 dbSNP
rs1003595966 483 dbSNP
rs763531883 484 dbSNP
rs1033781670 492 dbSNP
rs377523420 508 dbSNP
rs1165798198 511 dbSNP
rs895297908 512 dbSNP
rs1419371876 514 dbSNP
rs1187204422 516 dbSNP
rs1267083740 519 dbSNP
rs1486875665 519 dbSNP
rs995031707 526 dbSNP
rs1027900779 528 dbSNP
rs1292251212 532 dbSNP
rs1246634345 554 dbSNP
rs572361082 556 dbSNP
rs948149209 559 dbSNP
rs951034943 571 dbSNP
rs751159440 573 dbSNP
rs1005547630 581 dbSNP
rs10150621 586 dbSNP
rs3813410 587 dbSNP
rs1403966276 619 dbSNP
rs976449567 620 dbSNP
rs182588199 626 dbSNP
rs953869316 627 dbSNP
rs1295683823 629 dbSNP
rs989309330 642 dbSNP
rs1460739535 643 dbSNP
rs529756573 648 dbSNP
rs543074823 655 dbSNP
rs1373054294 667 dbSNP
rs1171694180 668 dbSNP
rs998134579 671 dbSNP
rs1427278288 674 dbSNP
rs1198716028 677 dbSNP
rs915141301 684 dbSNP
rs1389078295 703 dbSNP
rs1407727686 708 dbSNP
rs1480891550 725 dbSNP
rs1271273812 728 dbSNP
rs879248746 740 dbSNP
rs145422769 746 dbSNP
rs955330572 747 dbSNP
rs985243224 762 dbSNP
rs1457302777 763 dbSNP
rs755943425 770 dbSNP
rs962376516 771 dbSNP
rs779945221 773 dbSNP
rs563590493 778 dbSNP
rs927957845 785 dbSNP
rs973725098 798 dbSNP
rs1396215963 805 dbSNP
rs532539959 809 dbSNP
rs939356201 814 dbSNP
rs1467659831 815 dbSNP
rs1404462954 819 dbSNP
rs1212910593 822 dbSNP
rs1055202008 835 dbSNP
rs895265154 836 dbSNP
rs1379639661 847 dbSNP
rs145237577 848 dbSNP
rs1249571297 850 dbSNP
rs1178947648 859 dbSNP
rs566069960 861 dbSNP
rs886613370 862 dbSNP
rs757105187 863 dbSNP
rs528741822 867 dbSNP
rs1271737445 870 dbSNP
rs1470095606 874 dbSNP
rs1214643836 875 dbSNP
rs548447763 882 dbSNP
rs755047514 887 dbSNP
rs917771120 894 dbSNP
rs1019635281 899 dbSNP
rs1045158588 905 dbSNP
rs1474199993 905 dbSNP
rs778861631 906 dbSNP
rs17098785 908 dbSNP
rs1052384468 909 dbSNP
rs1423217235 921 dbSNP
rs1162702081 932 dbSNP
rs997837997 933 dbSNP
rs865891999 938 dbSNP
rs372270502 940 dbSNP
rs772410058 941 dbSNP
rs115591323 942 dbSNP
rs773635253 944 dbSNP
rs747341863 962 dbSNP
rs1441286575 964 dbSNP
rs193172389 967 dbSNP
rs1319593112 971 dbSNP
rs569649133 978 dbSNP
rs978015991 981 dbSNP
rs927899852 997 dbSNP
rs1344851490 999 dbSNP
rs185068648 1005 dbSNP
rs1442549415 1006 dbSNP
rs997767290 1006 dbSNP
rs1202789385 1008 dbSNP
rs558572100 1008 dbSNP
rs939324817 1017 dbSNP
rs1052420556 1023 dbSNP
rs1055168095 1024 dbSNP
rs1357704807 1036 dbSNP
rs1315050489 1046 dbSNP
rs771468813 1048 dbSNP
rs1272052311 1053 dbSNP
rs1362737836 1056 dbSNP
rs1233284990 1069 dbSNP
rs1291985556 1076 dbSNP
rs1008105173 1080 dbSNP
rs1381668881 1081 dbSNP
rs916585427 1087 dbSNP
rs367849057 1090 dbSNP
rs530764556 1091 dbSNP
rs14095 1095 dbSNP
rs1005487328 1097 dbSNP
rs1217467201 1099 dbSNP
rs1040619386 1106 dbSNP
rs1445901156 1108 dbSNP
rs1263506926 1113 dbSNP
rs1482639347 1138 dbSNP
rs763604521 1140 dbSNP
rs902139563 1141 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cgCUCUCACGCCCGGGGUCCUc 5'
            |||| |     |:|||||| 
Target 5' uaGAGAUU-----CUCCAGGAa 3'
 		1 - 17
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000332981.5 | 3UTR | UAGAGAUUCUCCAGGAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
190 hsa-miR-1343-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT106691 TGFBR1 transforming growth factor beta receptor 1 2 2
MIRT139902 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT165720 PANK3 pantothenate kinase 3 2 2
MIRT248351 CBX5 chromobox 5 2 2
MIRT286658 ZNF207 zinc finger protein 207 2 6
MIRT382505 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT444443 PLCXD2 phosphatidylinositol specific phospholipase C X domain containing 2 2 2
MIRT446605 HIP1 huntingtin interacting protein 1 2 2
MIRT447106 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT465216 TRIP10 thyroid hormone receptor interactor 10 2 2
MIRT465244 TRIM44 tripartite motif containing 44 2 2
MIRT467950 SLC16A1 solute carrier family 16 member 1 2 2
MIRT473956 LRRC58 leucine rich repeat containing 58 2 2
MIRT478522 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT479275 CHD4 chromodomain helicase DNA binding protein 4 2 6
MIRT480078 CALR calreticulin 2 2
MIRT481221 ATXN7L3 ataxin 7 like 3 2 2
MIRT481967 AMOTL2 angiomotin like 2 2 2
MIRT483021 KHSRP KH-type splicing regulatory protein 2 4
MIRT485625 EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 2 2
MIRT487102 SCARF2 scavenger receptor class F member 2 2 2
MIRT492517 RAB15 RAB15, member RAS oncogene family 2 4
MIRT492543 PRX periaxin 2 6
MIRT504979 ZNF704 zinc finger protein 704 2 6
MIRT506171 PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 2 4
MIRT507280 FEM1B fem-1 homolog B 2 2
MIRT520171 WBP2 WW domain binding protein 2 2 4
MIRT521288 RRAGD Ras related GTP binding D 2 4
MIRT522080 NUP50 nucleoporin 50 2 4
MIRT525769 SOD2 superoxide dismutase 2 2 2
MIRT526403 TFAM transcription factor A, mitochondrial 2 2
MIRT528554 DNAAF3 dynein axonemal assembly factor 3 2 2
MIRT528709 S100A2 S100 calcium binding protein A2 2 2
MIRT531516 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT538023 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT539555 CNKSR3 CNKSR family member 3 2 4
MIRT540032 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540223 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540240 RGS17 regulator of G protein signaling 17 2 2
MIRT540864 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT540890 SRSF9 serine and arginine rich splicing factor 9 2 2
MIRT541327 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT541846 PLIN5 perilipin 5 2 2
MIRT546218 TNRC18P2 trinucleotide repeat containing 18 pseudogene 2 2 4
MIRT550019 BAG1 BCL2 associated athanogene 1 2 2
MIRT551430 F2 coagulation factor II, thrombin 2 2
MIRT558608 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT564309 CCNT1 cyclin T1 2 2
MIRT565287 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT571944 LARP1 La ribonucleoprotein domain family member 1 2 2
MIRT572138 DESI1 desumoylating isopeptidase 1 2 2
MIRT572262 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT573586 CERS1 ceramide synthase 1 2 2
MIRT574114 CDCP1 CUB domain containing protein 1 2 2
MIRT610657 SASH1 SAM and SH3 domain containing 1 2 2
MIRT611150 ZNF486 zinc finger protein 486 2 2
MIRT613491 ZNF488 zinc finger protein 488 2 2
MIRT613997 KPNA5 karyopherin subunit alpha 5 2 2
MIRT614805 RIOK3 RIO kinase 3 2 2
MIRT616094 HOXB5 homeobox B5 2 2
MIRT617334 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617376 FAM227A family with sequence similarity 227 member A 2 2
MIRT620884 ANO7 anoctamin 7 2 2
MIRT620917 LRRTM2 leucine rich repeat transmembrane neuronal 2 2 2
MIRT621216 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT622781 PGK1 phosphoglycerate kinase 1 2 2
MIRT624559 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT626014 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626359 DIS3L DIS3 like exosome 3'-5' exoribonuclease 2 2
MIRT627476 STRN striatin 2 2
MIRT629250 KDM2B lysine demethylase 2B 2 2
MIRT630531 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT630769 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT631296 CBS cystathionine-beta-synthase 2 2
MIRT633131 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT634875 SENP8 SUMO/sentrin peptidase family member, NEDD8 specific 2 2
MIRT635337 RBL1 RB transcriptional corepressor like 1 2 2
MIRT636947 APTX aprataxin 2 2
MIRT637799 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT638619 GSR glutathione-disulfide reductase 2 4
MIRT639803 AHCY adenosylhomocysteinase 2 2
MIRT640389 ZNF785 zinc finger protein 785 2 2
MIRT642194 SMAGP small cell adhesion glycoprotein 2 2
MIRT643014 LETM2 leucine zipper and EF-hand containing transmembrane protein 2 2 2
MIRT645119 HES2 hes family bHLH transcription factor 2 2 2
MIRT645637 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT646035 NPR1 natriuretic peptide receptor 1 2 2
MIRT646560 ALDH5A1 aldehyde dehydrogenase 5 family member A1 2 2
MIRT647782 ASB8 ankyrin repeat and SOCS box containing 8 2 2
MIRT647956 FBXO31 F-box protein 31 2 2
MIRT648085 FAM192A family with sequence similarity 192 member A 2 2
MIRT648666 ZNF626 zinc finger protein 626 2 2
MIRT649241 TRIM65 tripartite motif containing 65 2 2
MIRT649300 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT650509 UFM1 ubiquitin fold modifier 1 2 2
MIRT651385 ZBTB16 zinc finger and BTB domain containing 16 2 2
MIRT651808 USP49 ubiquitin specific peptidase 49 2 2
MIRT652468 TMEM181 transmembrane protein 181 2 2
MIRT652580 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT653026 STX1B syntaxin 1B 2 2
MIRT654759 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT655195 PHAX phosphorylated adaptor for RNA export 2 2
MIRT655530 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT655890 NEK9 NIMA related kinase 9 2 2
MIRT656562 LYRM7 LYR motif containing 7 2 2
MIRT657192 IKZF3 IKAROS family zinc finger 3 2 2
MIRT657807 GJD3 gap junction protein delta 3 2 2
MIRT658692 EMC3 ER membrane protein complex subunit 3 2 2
MIRT660201 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660982 ABHD2 abhydrolase domain containing 2 2 2
MIRT661254 FANCA Fanconi anemia complementation group A 2 2
MIRT661818 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT665575 TUBD1 tubulin delta 1 2 2
MIRT666455 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT666512 RNF170 ring finger protein 170 2 2
MIRT666968 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 2
MIRT667272 NAV1 neuron navigator 1 2 2
MIRT668150 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT668327 FKBP5 FK506 binding protein 5 2 2
MIRT669302 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT671678 ADK adenosine kinase 2 2
MIRT673597 HPSE heparanase 2 2
MIRT673747 ZNF333 zinc finger protein 333 2 2
MIRT674805 FAM229B family with sequence similarity 229 member B 2 2
MIRT675134 ZNF347 zinc finger protein 347 2 2
MIRT675284 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675389 SVOP SV2 related protein 2 2
MIRT675786 MED28 mediator complex subunit 28 2 2
MIRT676149 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676557 VSIG1 V-set and immunoglobulin domain containing 1 2 2
MIRT676642 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676709 METTL14 methyltransferase like 14 2 2
MIRT676807 SHROOM4 shroom family member 4 2 2
MIRT677083 SMIM15 small integral membrane protein 15 2 2
MIRT677191 MURC caveolae associated protein 4 2 2
MIRT677271 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677343 POC1A POC1 centriolar protein A 2 2
MIRT677502 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677520 OCIAD2 OCIA domain containing 2 2 2
MIRT677617 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT677657 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT677721 SSR1 signal sequence receptor subunit 1 2 2
MIRT677797 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT678142 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678205 CSNK1E casein kinase 1 epsilon 2 2
MIRT678374 VTA1 vesicle trafficking 1 2 2
MIRT678706 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT679037 LACTB lactamase beta 2 2
MIRT679078 PURB purine rich element binding protein B 2 2
MIRT679134 SYK spleen associated tyrosine kinase 2 2
MIRT679293 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679739 CABP4 calcium binding protein 4 2 2
MIRT679944 AS3MT arsenite methyltransferase 2 2
MIRT679974 E2F2 E2F transcription factor 2 2 2
MIRT680386 OXA1L OXA1L, mitochondrial inner membrane protein 2 2
MIRT683626 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT683899 PSMB9 proteasome subunit beta 9 2 2
MIRT684170 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684228 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT685398 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686251 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT687511 NCKAP1 NCK associated protein 1 2 2
MIRT688241 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688312 FAM151B family with sequence similarity 151 member B 2 2
MIRT688730 CNDP1 carnosine dipeptidase 1 2 2
MIRT689029 ANGPTL3 angiopoietin like 3 2 2
MIRT692514 PARD3 par-3 family cell polarity regulator 2 2
MIRT693728 ACACA acetyl-CoA carboxylase alpha 2 2
MIRT698886 SPTBN2 spectrin beta, non-erythrocytic 2 2 2
MIRT702564 JARID2 jumonji and AT-rich interaction domain containing 2 2 2
MIRT709949 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT710157 MTRF1L mitochondrial translational release factor 1 like 2 2
MIRT710225 KCNK1 potassium two pore domain channel subfamily K member 1 2 2
MIRT711539 MSH3 mutS homolog 3 2 2
MIRT712444 KHNYN KH and NYN domain containing 2 2
MIRT712458 KCNC3 potassium voltage-gated channel subfamily C member 3 2 2
MIRT714696 MT1A metallothionein 1A 2 2
MIRT715306 POLR2E RNA polymerase II subunit E 2 2
MIRT716599 MPPED1 metallophosphoesterase domain containing 1 2 2
MIRT717602 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT718824 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT720407 SPRED3 sprouty related EVH1 domain containing 3 2 2
MIRT720503 PHKG2 phosphorylase kinase catalytic subunit gamma 2 2 2
MIRT722479 QSOX1 quiescin sulfhydryl oxidase 1 2 2
MIRT722519 PLXNA2 plexin A2 2 2
MIRT723308 PRKCH protein kinase C eta 2 2
MIRT724332 RNPEPL1 arginyl aminopeptidase like 1 2 2
MIRT732625 DUOX2 dual oxidase 2 1 0
MIRT733418 LINC02323 long intergenic non-protein coding RNA 2323 3 0
MIRT736453 TGFB1 transforming growth factor beta 1 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1343 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-1343 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-1343-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-1343-3p Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-1343-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1343-3p Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1343-3p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-1343-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

Error report submission