pre-miRNA Information
pre-miRNA hsa-mir-4778   
Genomic Coordinates chr2: 66358249 - 66358328
Description Homo sapiens miR-4778 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4778-3p
Sequence 51| UCUUCUUCCUUUGCAGAGUUGA |72
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs936001904 2 dbSNP
rs925922703 3 dbSNP
rs184768286 8 dbSNP
rs1249073833 10 dbSNP
rs977504360 13 dbSNP
rs192300002 18 dbSNP
Putative Targets

Gene Information
Gene Symbol ADI1   
Synonyms APL1, ARD, Fe-ARD, HMFT1638, MTCBP1, Ni-ARD, SIPL, mtnD
Description acireductone dioxygenase 1
Transcript NM_018269   
Expression
Putative miRNA Targets on ADI1
3'UTR of ADI1
(miRNA target sites are highlighted)
>ADI1|NM_018269|3'UTR
   1 CAGTGCTGCCTGGGAACTAACACGTGCCTCGTAAAGGTCCCCAATGTAATGACTGAGCAGAAAATCAATCACTTTCTCTT
  81 TGCTTTTAGAGGATAGCCTTGAGGCTAGATTATCTTTCCTTTGTAAGATTATTTGATCAGAATATTTTGTAATGAAAGGA
 161 TCTAGAAAGCAACTTGGAAGTGTAAAGAGTCACCTTCATTTTCTGTAACTCAATCAAGACTGGTGGGTCCATGGCCCTGT
 241 GTTAGTTCATGCATTCAGTTGAGTCCCAAATGAAAGTTTCATCTCCCGAAATGCAGTTCCTTAGATGCCCATCTGGACGT
 321 GATGCCGCGCCTGCCGTGTAAGAAGGTGCAATCCTAGATAACACAGCTAGCCAGATAGAAGACACTTTTTTCTCCAAAAT
 401 GATGCCTTGGGGTGGGGAGTGGTAGGGGGAAGAGCTCCCACCCTAAGGGGCACACACTGAGTTGCTTATGCCACTTCCTT
 481 GTTCAAAATAAAGTAACTGCCTTAATCTTATACTCATGGCTTGGAGTTACCTTATATTCAGGTATATGTGATATTTTGCC
 561 TGGTTTGTTAAAATTGCCCCATTTAGATTCCTTCTATAATTGTTCTTATAGATAAGTAATTTATATATGAGCTGTGTTAG
 641 TATTTTTTCAGTGTGAGATCTCTGGATTCTTTCACAATAAAGCTGTTGAATTTTAACAGGAGTATTAGTACATAAATTTT
 721 CTACTCAACAATTCCGAGATAGGATTATGCCTAGTTTGTCATATCACAGAAAAACTCCAAGTTAACTTCATGTTTTGGAA
 801 GGGCAGGTCGTTTTTAAAGTATTTCTTTTTTTAACTGGATGAAAAATCTTCATGTTAGGATTAATTTTCTTAATCACCTC
 881 CACACTGTACAGAGGAAACTCAAGCCTTAAATGTTTAAGTAAACTCTGTCTCAGTTTTAGGATTAAAATACCCACCGGTG
 961 GTGTGATGATGCCATATACCGCAGGGCTTGCTTCTGTCAAGTGTGACTCTATCTCAGTAATTAAAATAAGTGCTGATCTA
1041 CTGAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aguugaGACGUUUCCUUCUUCu 5'
                |||| : | |||||| 
Target 5' ccgcgcCTGCCGTGTAAGAAGg 3'
325 - 346 128.00 -11.30
2
miRNA  3' aguUGAGACGUUUCCUUCUUcu 5'
             || |||:| | ||:|||  
Target 5' tccACACTGTACA-GAGGAAac 3'
879 - 899 126.00 -10.24
3
miRNA  3' agUUGAGACGUUU--CCU-UCUUCu 5'
            ||| | || |:   || ||||| 
Target 5' atAACACAGCTAGCCAGATAGAAGa 3'
358 - 382 122.00 -13.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN3088461 1 COSMIC
COSN31572829 5 COSMIC
COSN30180619 24 COSMIC
COSN20074442 31 COSMIC
COSN31494764 47 COSMIC
COSN30155197 55 COSMIC
COSN1837190 68 COSMIC
COSN30156962 70 COSMIC
COSN26965264 76 COSMIC
COSN30526009 81 COSMIC
COSN30510178 91 COSMIC
COSN8868154 109 COSMIC
COSN30488586 118 COSMIC
COSN30488593 119 COSMIC
COSN26691835 173 COSMIC
COSN1238043 252 COSMIC
COSN15747826 516 COSMIC
COSN4606100 534 COSMIC
COSN29830409 761 COSMIC
COSN7246066 944 COSMIC
COSN16148506 1095 COSMIC
COSN25393010 1173 COSMIC
COSN28476900 1549 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1003756035 1 dbSNP
rs535892517 4 dbSNP
rs750318073 8 dbSNP
rs765149986 9 dbSNP
rs1374306302 15 dbSNP
rs760815269 17 dbSNP
rs1434592587 20 dbSNP
rs752745822 22 dbSNP
rs373506681 23 dbSNP
rs759752630 24 dbSNP
rs10208494 25 dbSNP
rs763380271 26 dbSNP
rs1338800328 27 dbSNP
rs1420115795 28 dbSNP
rs369579979 30 dbSNP
rs1012162845 31 dbSNP
rs1476848486 36 dbSNP
rs1247904013 37 dbSNP
rs145825002 44 dbSNP
rs747698961 45 dbSNP
rs371879652 50 dbSNP
rs939083366 54 dbSNP
rs1285035540 57 dbSNP
rs1354371390 69 dbSNP
rs542113701 70 dbSNP
rs1325769705 72 dbSNP
rs1187556012 74 dbSNP
rs781647971 77 dbSNP
rs1238854961 83 dbSNP
rs1437418180 89 dbSNP
rs1316189946 101 dbSNP
rs757710785 103 dbSNP
rs1130127 109 dbSNP
rs1160834734 125 dbSNP
rs1400614709 126 dbSNP
rs1413993938 130 dbSNP
rs1334911519 135 dbSNP
rs946379943 152 dbSNP
rs1444794716 153 dbSNP
rs1308320718 154 dbSNP
rs914797388 156 dbSNP
rs768801895 165 dbSNP
rs1040786151 168 dbSNP
rs1302330871 169 dbSNP
rs943810939 176 dbSNP
rs911393750 179 dbSNP
rs1273009058 182 dbSNP
rs1424189861 186 dbSNP
rs1280090147 187 dbSNP
rs1383624699 187 dbSNP
rs1050384379 197 dbSNP
rs370228060 209 dbSNP
rs1238367139 210 dbSNP
rs911376031 213 dbSNP
rs931532432 222 dbSNP
rs920179590 232 dbSNP
rs1477987503 237 dbSNP
rs1173272086 238 dbSNP
rs35440648 238 dbSNP
rs1431511330 248 dbSNP
rs972683460 250 dbSNP
rs1401218666 254 dbSNP
rs185393237 266 dbSNP
rs777196905 269 dbSNP
rs1264290103 273 dbSNP
rs758080139 275 dbSNP
rs963040822 276 dbSNP
rs1016922839 280 dbSNP
rs762880624 287 dbSNP
rs1258324586 288 dbSNP
rs970586169 295 dbSNP
rs531940969 299 dbSNP
rs1209885429 309 dbSNP
rs1458807929 312 dbSNP
rs1012497782 318 dbSNP
rs191965184 319 dbSNP
rs188601518 322 dbSNP
rs1200226559 323 dbSNP
rs562628206 326 dbSNP
rs545894260 327 dbSNP
rs145094994 328 dbSNP
rs374201772 329 dbSNP
rs1463715766 335 dbSNP
rs1130165 336 dbSNP
rs1387096162 342 dbSNP
rs1304883868 355 dbSNP
rs1038743756 356 dbSNP
rs753866374 357 dbSNP
rs1007971800 366 dbSNP
rs554246212 375 dbSNP
rs1242129167 376 dbSNP
rs1395817642 379 dbSNP
rs1166256814 380 dbSNP
rs1049880972 386 dbSNP
rs1479057612 388 dbSNP
rs1210738147 394 dbSNP
rs1051240486 397 dbSNP
rs1487585682 401 dbSNP
rs868749307 404 dbSNP
rs1199130090 405 dbSNP
rs1479687790 406 dbSNP
rs746861505 414 dbSNP
rs1248057701 416 dbSNP
rs931498056 421 dbSNP
rs1368049721 425 dbSNP
rs3350 426 dbSNP
rs1037230565 434 dbSNP
rs1358623432 437 dbSNP
rs1418994145 442 dbSNP
rs1298334818 445 dbSNP
rs940301148 453 dbSNP
rs1270199049 456 dbSNP
rs1393746250 457 dbSNP
rs1311573468 462 dbSNP
rs1340639626 477 dbSNP
rs1199987699 479 dbSNP
rs1247244054 489 dbSNP
rs1294393651 492 dbSNP
rs1352202177 493 dbSNP
rs1318509891 501 dbSNP
rs111279693 502 dbSNP
rs578052592 509 dbSNP
rs1486893811 511 dbSNP
rs1198745478 513 dbSNP
rs1262496603 523 dbSNP
rs1185242290 530 dbSNP
rs928650798 532 dbSNP
rs572440874 534 dbSNP
rs3349 536 dbSNP
rs959260769 540 dbSNP
rs1464113850 541 dbSNP
rs1301736976 542 dbSNP
rs1437400427 544 dbSNP
rs970132249 546 dbSNP
rs1034904825 579 dbSNP
rs35216611 581 dbSNP
rs1317669085 587 dbSNP
rs916000147 590 dbSNP
rs1239791203 594 dbSNP
rs1308357863 600 dbSNP
rs1319237720 606 dbSNP
rs537939007 612 dbSNP
rs1326862490 616 dbSNP
rs1003346594 617 dbSNP
rs1205837813 628 dbSNP
rs1467297399 631 dbSNP
rs966940265 632 dbSNP
rs1401628692 649 dbSNP
rs1176381557 651 dbSNP
rs1431363755 652 dbSNP
rs1174791075 659 dbSNP
rs990624764 665 dbSNP
rs1130319 679 dbSNP
rs555680676 680 dbSNP
rs1470642160 685 dbSNP
rs1328879270 686 dbSNP
rs1130333 699 dbSNP
rs558090409 700 dbSNP
rs754519337 705 dbSNP
rs1038691193 710 dbSNP
rs566833739 711 dbSNP
rs999442777 715 dbSNP
rs1007250409 720 dbSNP
rs890001700 721 dbSNP
rs775572869 723 dbSNP
rs1051791799 727 dbSNP
rs536284959 735 dbSNP
rs1317503077 736 dbSNP
rs967066121 740 dbSNP
rs1242420332 742 dbSNP
rs1487492923 743 dbSNP
rs753280710 751 dbSNP
rs780668547 754 dbSNP
rs1267893068 773 dbSNP
rs1313906698 775 dbSNP
rs1167903477 786 dbSNP
rs139567586 797 dbSNP
rs746239496 801 dbSNP
rs1223006219 804 dbSNP
rs889518846 805 dbSNP
rs1356668787 808 dbSNP
rs1049954901 809 dbSNP
rs570875881 810 dbSNP
rs959374733 813 dbSNP
rs1377685626 833 dbSNP
rs898647931 843 dbSNP
rs1340171131 848 dbSNP
rs1336183938 852 dbSNP
rs1451021445 853 dbSNP
rs1361407991 854 dbSNP
rs1275318880 859 dbSNP
rs1319735792 876 dbSNP
rs1177235409 880 dbSNP
rs1292482834 885 dbSNP
rs1490819657 889 dbSNP
rs1037199667 901 dbSNP
rs549881343 904 dbSNP
rs907455574 905 dbSNP
rs183828285 919 dbSNP
rs1187936314 921 dbSNP
rs1405320261 924 dbSNP
rs948744604 933 dbSNP
rs1164499199 935 dbSNP
rs1366806011 951 dbSNP
rs781494406 953 dbSNP
rs1130388 954 dbSNP
rs1427073178 955 dbSNP
rs1296475954 956 dbSNP
rs915942648 957 dbSNP
rs990215586 963 dbSNP
rs1384028266 970 dbSNP
rs1021193872 971 dbSNP
rs191285011 974 dbSNP
rs1017367179 975 dbSNP
rs1361567943 977 dbSNP
rs1238052008 979 dbSNP
rs1214393306 980 dbSNP
rs925101786 981 dbSNP
rs539966716 984 dbSNP
rs1235436130 989 dbSNP
rs1287933451 1004 dbSNP
rs1472256262 1005 dbSNP
rs1183406595 1010 dbSNP
rs1386225965 1013 dbSNP
rs966616157 1015 dbSNP
rs541385720 1016 dbSNP
rs548892378 1017 dbSNP
rs1157415534 1019 dbSNP
rs1019965906 1020 dbSNP
rs1242518926 1023 dbSNP
rs1401417888 1025 dbSNP
rs1320365204 1030 dbSNP
rs1447548898 1053 dbSNP
rs998824876 1053 dbSNP
rs777319387 1059 dbSNP
rs897432584 1061 dbSNP
rs1037576629 1070 dbSNP
rs527440217 1071 dbSNP
rs953827866 1072 dbSNP
rs1314388044 1095 dbSNP
rs941548097 1096 dbSNP
rs1225033954 1100 dbSNP
rs374640255 1102 dbSNP
rs796516855 1102 dbSNP
rs866533874 1107 dbSNP
rs757838557 1108 dbSNP
rs1430423624 1111 dbSNP
rs147339757 1114 dbSNP
rs73910575 1120 dbSNP
rs1419872220 1121 dbSNP
rs578097115 1127 dbSNP
rs1364579706 1128 dbSNP
rs1004339927 1131 dbSNP
rs144192849 1132 dbSNP
rs1469322468 1139 dbSNP
rs907424223 1142 dbSNP
rs1337648542 1143 dbSNP
rs1372844684 1143 dbSNP
rs1444371413 1144 dbSNP
rs544740090 1152 dbSNP
rs949023089 1153 dbSNP
rs1444266614 1158 dbSNP
rs35674295 1167 dbSNP
rs574063942 1174 dbSNP
rs1223522094 1195 dbSNP
rs989678898 1196 dbSNP
rs188042121 1199 dbSNP
rs762113733 1200 dbSNP
rs182526371 1203 dbSNP
rs1488737537 1204 dbSNP
rs1184644483 1205 dbSNP
rs1245424831 1206 dbSNP
rs1291387661 1208 dbSNP
rs751817773 1212 dbSNP
rs1219437649 1213 dbSNP
rs1177221022 1216 dbSNP
rs1431800993 1217 dbSNP
rs1323623603 1219 dbSNP
rs139481397 1220 dbSNP
rs954465497 1226 dbSNP
rs1411408506 1232 dbSNP
rs945215239 1233 dbSNP
rs558045974 1237 dbSNP
rs1338032850 1248 dbSNP
rs912425387 1249 dbSNP
rs1217662442 1250 dbSNP
rs1251489793 1260 dbSNP
rs565955777 1275 dbSNP
rs539728128 1278 dbSNP
rs954024515 1284 dbSNP
rs1288425962 1287 dbSNP
rs897374422 1290 dbSNP
rs1200276080 1293 dbSNP
rs1271111435 1301 dbSNP
rs1339117133 1307 dbSNP
rs1027937263 1314 dbSNP
rs753719997 1316 dbSNP
rs1364562368 1319 dbSNP
rs570937354 1320 dbSNP
rs1015315034 1330 dbSNP
rs1003995758 1336 dbSNP
rs907345847 1338 dbSNP
rs766215199 1339 dbSNP
rs1013579740 1341 dbSNP
rs1295861478 1343 dbSNP
rs549506338 1343 dbSNP
rs938084556 1346 dbSNP
rs1327813153 1349 dbSNP
rs1349904620 1353 dbSNP
rs760706240 1354 dbSNP
rs537984770 1367 dbSNP
rs750373118 1375 dbSNP
rs1463937452 1376 dbSNP
rs4398301 1378 dbSNP
rs1223915222 1385 dbSNP
rs1294540336 1396 dbSNP
rs945401034 1401 dbSNP
rs913774184 1423 dbSNP
rs1204573229 1428 dbSNP
rs150583308 1433 dbSNP
rs947581702 1434 dbSNP
rs1185204082 1442 dbSNP
rs1384401217 1442 dbSNP
rs762911419 1444 dbSNP
rs1268411438 1446 dbSNP
rs912380339 1449 dbSNP
rs910368919 1457 dbSNP
rs985989025 1459 dbSNP
rs954581377 1461 dbSNP
rs1393912197 1469 dbSNP
rs923062960 1474 dbSNP
rs1050976648 1475 dbSNP
rs932526625 1478 dbSNP
rs193284126 1479 dbSNP
rs1315645569 1482 dbSNP
rs1203923106 1494 dbSNP
rs973685204 1508 dbSNP
rs1238506997 1510 dbSNP
rs562037499 1525 dbSNP
rs908241591 1528 dbSNP
rs1260616741 1532 dbSNP
rs1198979228 1538 dbSNP
rs376293098 1549 dbSNP
rs1345226129 1550 dbSNP
rs1005742865 1556 dbSNP
rs141799133 1573 dbSNP
rs1159264408 1578 dbSNP
rs1024862367 1596 dbSNP
rs1365059711 1597 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000327435.6 | 3UTR | AGAAGAUGGGUCCUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
169 hsa-miR-4778-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT199338 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT203028 MAP3K2 mitogen-activated protein kinase kinase kinase 2 2 2
MIRT260646 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT336468 SRP9 signal recognition particle 9 2 2
MIRT389212 SERTAD2 SERTA domain containing 2 2 2
MIRT441814 TENM1 teneurin transmembrane protein 1 2 2
MIRT444029 GREM1 gremlin 1, DAN family BMP antagonist 2 4
MIRT454171 HIST1H2BK histone cluster 1 H2B family member k 2 2
MIRT469663 RABEPK Rab9 effector protein with kelch motifs 2 2
MIRT495579 PLEKHA8 pleckstrin homology domain containing A8 2 2
MIRT498340 PRELID2 PRELI domain containing 2 2 2
MIRT498696 LYRM2 LYR motif containing 2 2 6
MIRT504156 OPN5 opsin 5 2 4
MIRT506321 OTUD4 OTU deubiquitinase 4 2 4
MIRT507608 DCAF7 DDB1 and CUL4 associated factor 7 2 2
MIRT525431 PROX2 prospero homeobox 2 2 2
MIRT526973 PAX7 paired box 7 2 2
MIRT527814 TMEM74B transmembrane protein 74B 2 2
MIRT527960 MTAP methylthioadenosine phosphorylase 2 2
MIRT528083 NOL9 nucleolar protein 9 2 2
MIRT528480 STAMBPL1 STAM binding protein like 1 2 2
MIRT528947 PNMA5 paraneoplastic Ma antigen family member 5 2 2
MIRT530687 C8orf46 chromosome 8 open reading frame 46 2 2
MIRT531733 SLC2A9 solute carrier family 2 member 9 2 2
MIRT532445 PLGRKT plasminogen receptor with a C-terminal lysine 2 2
MIRT533331 UNK unkempt family zinc finger 2 2
MIRT534205 SLC38A9 solute carrier family 38 member 9 2 2
MIRT534322 SHISA6 shisa family member 6 2 2
MIRT535197 PLCL1 phospholipase C like 1 (inactive) 2 2
MIRT538076 DIAPH2 diaphanous related formin 2 2 2
MIRT539250 ANKRD50 ankyrin repeat domain 50 2 2
MIRT548733 CREBRF CREB3 regulatory factor 2 2
MIRT556406 LRRC8B leucine rich repeat containing 8 VRAC subunit B 2 2
MIRT559576 AP1AR adaptor related protein complex 1 associated regulatory protein 2 2
MIRT567661 ERGIC2 ERGIC and golgi 2 2 2
MIRT572750 FAM204A family with sequence similarity 204 member A 2 2
MIRT609355 ZNF664 zinc finger protein 664 2 2
MIRT611194 TMEM105 transmembrane protein 105 2 2
MIRT611545 BIRC5 baculoviral IAP repeat containing 5 2 4
MIRT611690 NODAL nodal growth differentiation factor 2 2
MIRT611810 FCRL4 Fc receptor like 4 2 2
MIRT612746 MYOCD myocardin 2 2
MIRT614177 FAM53B family with sequence similarity 53 member B 2 2
MIRT614431 TAZ tafazzin 2 2
MIRT614586 SDC1 syndecan 1 2 2
MIRT615547 TNFSF15 TNF superfamily member 15 2 2
MIRT615872 BRD3 bromodomain containing 3 2 2
MIRT615970 ASCL1 achaete-scute family bHLH transcription factor 1 2 2
MIRT616024 PRRG4 proline rich and Gla domain 4 2 4
MIRT616242 NFIC nuclear factor I C 2 2
MIRT616282 HMGB1 high mobility group box 1 2 2
MIRT616674 PRR15 proline rich 15 2 2
MIRT618302 COL4A4 collagen type IV alpha 4 chain 2 2
MIRT618657 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT618754 SLC38A5 solute carrier family 38 member 5 2 2
MIRT619505 TXLNB taxilin beta 2 2
MIRT619545 GABRG2 gamma-aminobutyric acid type A receptor gamma2 subunit 2 2
MIRT619605 MKKS McKusick-Kaufman syndrome 2 2
MIRT619804 CDC42EP4 CDC42 effector protein 4 2 2
MIRT619923 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT620442 SEMA3E semaphorin 3E 2 4
MIRT620730 CCL16 C-C motif chemokine ligand 16 2 2
MIRT625345 TAPBP TAP binding protein 2 2
MIRT627510 ST8SIA3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 2 2
MIRT632584 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636901 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT637873 UTP6 UTP6, small subunit processome component 2 2
MIRT639011 ABI2 abl interactor 2 2 2
MIRT639054 FPR1 formyl peptide receptor 1 2 2
MIRT639085 ADCYAP1 adenylate cyclase activating polypeptide 1 2 2
MIRT639589 RGS5 regulator of G protein signaling 5 2 2
MIRT639718 NPRL3 NPR3 like, GATOR1 complex subunit 2 2
MIRT639904 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT640392 ZNF785 zinc finger protein 785 2 2
MIRT640786 GRIK3 glutamate ionotropic receptor kainate type subunit 3 2 2
MIRT641290 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT641442 PELO pelota mRNA surveillance and ribosome rescue factor 2 2
MIRT642426 STAT3 signal transducer and activator of transcription 3 2 2
MIRT642682 KRT74 keratin 74 2 2
MIRT643362 TRIM10 tripartite motif containing 10 2 2
MIRT643982 DUSP28 dual specificity phosphatase 28 2 2
MIRT644466 ZNF747 zinc finger protein 747 2 2
MIRT644561 SPOP speckle type BTB/POZ protein 2 2
MIRT645748 FAM213A family with sequence similarity 213 member A 2 2
MIRT646737 FADS1 fatty acid desaturase 1 2 2
MIRT647446 SIX6 SIX homeobox 6 2 2
MIRT648317 SCNN1G sodium channel epithelial 1 gamma subunit 2 2
MIRT649327 POLG DNA polymerase gamma, catalytic subunit 2 2
MIRT649453 WDR70 WD repeat domain 70 2 2
MIRT650066 CCDC134 coiled-coil domain containing 134 2 2
MIRT650156 JUND JunD proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT650317 TMX4 thioredoxin related transmembrane protein 4 2 2
MIRT650429 BBS9 Bardet-Biedl syndrome 9 2 2
MIRT651325 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT651843 USP13 ubiquitin specific peptidase 13 2 2
MIRT652532 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT652816 TARDBP TAR DNA binding protein 2 2
MIRT652971 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT653466 SLC5A12 solute carrier family 5 member 12 2 4
MIRT653568 SLC35B3 solute carrier family 35 member B3 2 2
MIRT655678 NUMBL NUMB like, endocytic adaptor protein 2 2
MIRT656785 KPNA4 karyopherin subunit alpha 4 2 2
MIRT656798 KNTC1 kinetochore associated 1 2 2
MIRT656988 KDM5A lysine demethylase 5A 2 2
MIRT657292 HOXB5 homeobox B5 2 2
MIRT657497 HBEGF heparin binding EGF like growth factor 2 4
MIRT658012 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT658146 STXBP2 syntaxin binding protein 2 2 2
MIRT658259 FAXC failed axon connections homolog 2 2
MIRT659051 DGKH diacylglycerol kinase eta 2 2
MIRT659171 DCTN3 dynactin subunit 3 2 2
MIRT659936 CACHD1 cache domain containing 1 2 2
MIRT660079 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT660167 BNIP3L BCL2 interacting protein 3 like 2 2
MIRT660292 BICC1 BicC family RNA binding protein 1 2 2
MIRT660317 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT660340 BCAT1 branched chain amino acid transaminase 1 2 2
MIRT660447 ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 2 2
MIRT661634 UGT2B28 UDP glucuronosyltransferase family 2 member B28 2 2
MIRT662438 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664202 TBCA tubulin folding cofactor A 2 2
MIRT666436 SH2B3 SH2B adaptor protein 3 2 2
MIRT666666 RBM47 RNA binding motif protein 47 2 4
MIRT669253 C4orf36 chromosome 4 open reading frame 36 2 2
MIRT669502 ARL3 ADP ribosylation factor like GTPase 3 2 2
MIRT693912 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT700435 PURB purine rich element binding protein B 2 2
MIRT702857 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT708857 TMSB4X thymosin beta 4, X-linked 2 2
MIRT709030 KBTBD13 kelch repeat and BTB domain containing 13 2 2
MIRT709609 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT709810 AR androgen receptor 2 2
MIRT709872 A1CF APOBEC1 complementation factor 2 2
MIRT710208 ENAH ENAH, actin regulator 2 2
MIRT710964 CMKLR1 chemerin chemokine-like receptor 1 2 2
MIRT711173 EMCN endomucin 2 2
MIRT711219 RETSAT retinol saturase 2 2
MIRT711345 FMNL2 formin like 2 2 2
MIRT711441 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT711631 PEBP1 phosphatidylethanolamine binding protein 1 2 2
MIRT711823 MAPK8IP3 mitogen-activated protein kinase 8 interacting protein 3 2 2
MIRT712164 SURF4 surfeit 4 2 2
MIRT712632 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT713692 CYB5R4 cytochrome b5 reductase 4 2 2
MIRT714906 CHMP3 charged multivesicular body protein 3 2 2
MIRT715161 FIG4 FIG4 phosphoinositide 5-phosphatase 2 2
MIRT715430 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT715660 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT715968 FADS3 fatty acid desaturase 3 2 2
MIRT716203 TYW3 tRNA-yW synthesizing protein 3 homolog 2 2
MIRT716234 SRSF12 serine and arginine rich splicing factor 12 2 2
MIRT716251 PALM2 paralemmin 2 2 2
MIRT716375 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT716490 PHACTR2 phosphatase and actin regulator 2 2 2
MIRT716744 APOL6 apolipoprotein L6 2 2
MIRT717624 AGPAT4 1-acylglycerol-3-phosphate O-acyltransferase 4 2 2
MIRT718480 TMEM151A transmembrane protein 151A 2 2
MIRT718805 PRKCB protein kinase C beta 2 2
MIRT719276 SETD7 SET domain containing lysine methyltransferase 7 2 2
MIRT719432 NPTX2 neuronal pentraxin 2 2 2
MIRT721011 ZNF619 zinc finger protein 619 2 2
MIRT721819 HEATR5A HEAT repeat containing 5A 2 2
MIRT721997 CLLU1OS chronic lymphocytic leukemia up-regulated 1 opposite strand 2 2
MIRT723143 METTL24 methyltransferase like 24 2 2
MIRT723213 PIP5K1C phosphatidylinositol-4-phosphate 5-kinase type 1 gamma 2 2
MIRT723427 MC2R melanocortin 2 receptor 2 2
MIRT723436 ADI1 acireductone dioxygenase 1 2 2
MIRT723542 PAGR1 PAXIP1 associated glutamate rich protein 1 2 2
MIRT724474 MMD monocyte to macrophage differentiation associated 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4778-3p Platinum 23939 sensitive tissue (non-small cell lung cancer)
hsa-miR-4778-3p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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