miRTarBase - #MIRT724238


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pre-miRNA Information
pre-miRNA hsa-mir-548am   
Genomic Coordinates chrX: 16627012 - 16627085
Description Homo sapiens miR-548am stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548am-3p
Sequence 46| CAAAAACUGCAGUUACUUUUGU |67
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 X - 16627037 29233923 MiREDiBase
A-to-I 5 X - 16627036 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1337548768 19 dbSNP
Putative Targets

Gene Information
Gene Symbol DGKE   
Synonyms AHUS7, DAGK5, DAGK6, DGK, NPHS7
Description diacylglycerol kinase epsilon
Transcript NM_003647   
Expression
Putative miRNA Targets on DGKE
3'UTR of DGKE
(miRNA target sites are highlighted)		 
>DGKE|NM_003647|3'UTR
   1 ATGGATGAGGGAGTGAAAACTTTGCATAGAATCCTCACGCAAGTAGATACATGTTCATCCAAAAGTATTAATAGAAATTC
  81 TCTATCAGCTATTCAGTCTTAATTTCACTAGTAGTATAATGGGTATACATTTTTGTAAATAGCATCCCCAAACCAGCCAG
 161 CCTTCAGTTATTTACAAATGTTTGTTCTTTTTTCAGCAAAATACTTCAAATGAATAGTATTAACTTACAAAAAGTCACAA
 241 AAACTTACATGAGAGTGAAAATTTGTTATGACTGTTTTGAGAGTGGGACTCACTCTGAAGTATGTGCTGTCTCATGTCTT
 321 ATTTTTGAACCATGCATATGATGGACACACAATGGATGGACACATTATATCTCCAACAAGGTGTGGGTGGAAAGATCAAA
 401 TTAACCTGCTTTTTTGAAAGGAAATGATTACTGTCAAACCAGCATGGTTAATTGTGAGCATCCTCCTGCAGCATGCCCCT
 481 TAAGATTTTCTACAACCCAAACCAAGTGTATGTATTGATTTCTAGGAACCCCCAAAAGGAGAATAGTAAAAAAAGATCAT
 561 ACTTAAAATTTGTATTACAATTTTTATTTTAGGAACTTATTCAGACACGTAAATGTTGTTTAATTCTGTAGGTAACCATT
 641 TGAGCTGCAATTCAGGATCTTTTTTATAACACCAGTGTAGCCAAAAGAGAAACAGATAAGTGAATTGGTAAGAAATAAGA
 721 TTCAGAGCACTTGGGATTGTAAGTTATAGGTTCTGAGCTGAACTGTTTATCAGCCGCTCTTTTTATTAAAAGACAGTGTC
 801 AACACTTCAAAAAACGTGCTTAAAGGAGACAACGGTGAGATTAATTGCTTAGAAAAAGCTCAAGGCTGACTGATAAGTTT
 881 TAAAAATTTGGTGGTCTTGTAGTATTTTGAAATACAGTAGTCTTTTAACAGAATTTCCCCTTAGGGAGGTAAGTGGACAG
 961 AAATCTTTGCTAAAATGTTTATATCATATTTATTTTAAAATGAGAGAGATATATTTTTAAATTATTTATTATTTACCTTG
1041 TGGTATGGTACCTGTGTTTAGTGTTTACGTTCTGTAGCTTTATTTAATAAGTTAAATTGATCACATAAATTCTGCTAGTC
1121 ACAATCAGATAGAAATTTAGTCTATTAATTAAAATTCTAATTTAATTCTCCTGACAGAAATCTAGATATTCTTATTCTTC
1201 ACAAATATTCCTCATTGTATTGAAAAATGAAGGAGGGCATGAAAAGCACTAGGGAACTACTTTTGGATAACTGAAAGCTT
1281 TGTTTCATTGTTTTATTTGCCCCTCAATTGCCACAAACTTACTGAAGGGCTAGTTTCATGGTTCCCATTAGAGGGTGCTT
1361 GTTCGCTGCTGTTGACCAGCCCAAGGGTCGTGACCCACAGGTCGGCTGACCCAGAGGGCATCCAGCCTGGTGTTTTTCTG
1441 ACACATGGCCCAGGCTTTGTGGTCTTTCATGACATTAATCTCTGAAAGATCAGAATGTATCCCCCAAAATACCATTAGCT
1521 ATCTTTGAGGGTCTATTATGAATCTGTCATCCATGAATTGCCATAAACCTAAGTTTGCCTCACCTCAGGCCCAGACCATG
1601 TTTTCAAAGAGCAACTTAGTAATGTATACAGTAGTCAGTACATTTTATGAAATACTCTATTTTGCTAAATTAACCTCTTG
1681 CAGATCTCCTCAGGTGATCTTAAATTCTAGTCTTGAGAAACTTTGTGAGCAGATCTGTTTTCAGCTTCTTTATATACCTT
1761 TCATGGTAAGTAACCATGGCAGTGAGGATGGCAGAGTTTTGTTTTTTTTTTTTTTAATGGGCCAATCATGTTCTGAGTAT
1841 TATGAAGTTTATCCTTTCATTCATGATCAAAATTGTTAAAGACATCACATTTTATAAATACACTGTTAAATCCACTTTGC
1921 TGTAGGTTATAGTTTACCTGTTATATAATTCGTAGTGCTAATTGTAGTAGAAGCAAATCAATTTAGGATGTTGGAACGAA
2001 AATAATCACAATAACTAATACAGCTTTTTAATTGTGAAAACTACAATTAAAAATTATAATTTTAATACCAACCATAATAT
2081 TACACTGTATTTAGAACAGGCTTATGTAAAATGCCCTCATTTATCTAAATAAGTTGATTTTTTGGTTATTGTAATCTAGT
2161 AAGGTTTTTGCATCACTACTGGTCTGTCATGAAGTTTTTCTGCTGGCTTATTCACTTATTTAGACTTCATTTAGGGAAGC
2241 TATTTCAGAATACCATCTCATAAAATGTATCATTATCTTGTTTTTGCAAAATTCACTTACTTTTTGGGCACATTTACCCA
2321 GCATTTCAAATAAGTGTATAGGCATGTGCCTTGTTTAAGTACAATTTATAAGACTTCATGTTTGCAAGTTACATATTAGG
2401 GTAGTGATTGTTTATATTACCAGGGATTCTACACTTTACCAAAAAAAATTGCCATAAGATTTTCCTGTTCCATTTTAAAT
2481 TGTCTTGATATTTAAAAAAATAACTTCTACATTCTCAGGAAGAAATACATGAAGTAAATCATATCTCCATGTCTGTTTCC
2561 AGATTTCTCTAATCTTTTTACTATCCCAATACATTCCTAATTCCTATAAACGTAGTGGCTTAAATACTGAATACCTGGCA
2641 GCTCTTAAAGATCCCTTAGGCAGATGATGATAATTTTCAGTGTTTCGTCATGTTTAATAGAAATCAAACTGACTTGTGTT
2721 TTAAAATACAAGTTGTCTGCTAGTAAAGTTACATGATTTAGGTGTGTTTTAGGTTTTCTGCAACAATTAGCTGTGAACCC
2801 CTAATGTAGCTAAGTTTATACAAATTTTATAATCAAAATTATTTATTTTTATTTTTTTAGAGTATGTCAAAAACATATAG
2881 TGTTTGCTTTGTGAAATACATTTGCTTAGAGTTATAAAATATACTGTGACTCAGAAATTGTAAAGTCAGTTTGCGTTGTA
2961 AAAATGAATACTACCAGCATGTCAAAAGAAAAATAATTTACATTTGTAATATAAAGTAAAATTGTATTTAATATATTTAT
3041 TGAATTTTAAATTTGCACTAACTTGAAAACTTTAAAGGTTATACTAATTTAATGATTAATGTGGACCCAAATACATAATT
3121 TGGCCAAAAAAGTCATTAGAATGGGTAATGGTTTTGTGTGGTTTTCCTTCAAAATGATAATATTGAAGCAAGAACCAGCA
3201 TTTTATATTGATAATTTTTTTAATATTTCTACCCAGTTGAGGACAGTGGAATATAAGTAGATATATTTAAAATATCTAGA
3281 TATTTAAAAAGAAAGAAAAGGTTGTTTATCCCAATCTGAATTCATTCTCAGCAACAAGACAGAAAAGGTGGTTTGGGTTT
3361 TGCTTTTAAACAGTGTCCCCCTGTCTTTTTCAATTTTTCCCTTGAAGCCTTTCTCTTGTTCTTCAGAGTACGCGCTGCAG
3441 GCTATCTGCAGCATCAGAATGCCTGGGCAGGCTGTTGAAAGTATGGATTCCTGAGCCCAACCCTTAACTTAATGATTCCC
3521 TGTCTCTGGAGATGCAACATAGAAATCTCTGTTTTTATTAACAAGCGCCTCAGGCGATTCTTAAGCATACTGAAATTTGA
3601 AAGCTTCTGGTCTGAACCTCATGTATTCACCTAGGGCTTTTGCTAGGTGGGATACCATGCCGAAAAATTGAATTAATTGT
3681 ATGTTCTTAAAATTGTTTTTCTTCTACTCCGCTGTCCTCTTCCCTCAAAATCACTTTTCTAAAAGAACTCTATGAAAAAC
3761 TTATTTGTATCATACCCAAATTGATATATTTGTCTGAACTCTGTTACATAAAAATTGGTATGATTCATATGTGGAATCAG
3841 TTTTTGGACTGTGACCCATGCAGTGTTGGGGGACAAGGAGTTGCTTCAGGAGTTAGTGCAGTGCGCCTCCAAGGGGCAGT
3921 GAGCCATGGAGGCGCCTGCCTTCTCACTGCAGTCAATGCAGCCACACTTGTGTATACTGAGTGCTGCTTCAGATCTCAGT
4001 AGATAAAATAATTCCACATTTAAAATGATTCTGCTATTTTTTATAAAGGGTTTGAAAGCCACTACTATAATGACTTTGTC
4081 ACCTAATTGATTTTCTACTAATTTTTACATATTCAGAAACTTCGTGTTTTTTTGGTGGACAGAATATTTTGGAGGTCTCC
4161 GTCGCTGTTTAGAATGTGGCCACTTGGCTGTTTCACAGTTTTTAAAGCTATTTTATTGAATAGTAAAGCAGTGAACTTAG
4241 CCTTTGTTCTTTGTGTTTCTAATTTAAGCATATAGTCTATTTAATTTTTGATATGTAAATACACATCAATACATATATAT
4321 TTACCCATGTGGCCCTGTGTAGTCAGTGCATGAGGCTTGCATAGCCCAGAAAGGTACATTCCAGGGTTCTGGGGAAAGAA
4401 TTTTAAAATGCCATCCTCTAATACAGACGTTTATAAAACTTAAATGAAATGATTGGGCTTAACCATATGCAAGAAAGTCT
4481 GCAGAAAATAAATCACCTAGAAACTATAAATAGAAATGTGCTGCTGAGGCTGGGCACGGTGGCTCACACCTGTAATCCCA
4561 GCACTTGGGGGGCTAAGGGAGGCGTATCACCTGAGGTCAGGAGTTTGAGACAAGCCTGGTCAACATGGTGAAACGCCGTC
4641 TCTACTAAAAATACAAAAAAAATTAGCCAGGTACATTGGCACATGCCTTTAATCCCAGCTAATCAGGAGGCTGAGGCACG
4721 AGAATTGCTCGAACCCAGGCGGCAGAGCTTGCAGTGAGCGGAGATCACATGACTGCACTCCAGCCTGGGCAACAGAGCAA
4801 GACTCCATCTCAAAAAAAAAAAGGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTG
4881 GATCACGAGGTCAGGAGATCGAGACTATCCTGGCTAACACGGTGACACCCCGCCTCTACTAAAAATCCAAAAATTTAGCC
4961 GGGCATGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGC
5041 TTGCAGGGAGGCGGAGCTTGCAGCGAGCCGAGATAGTGCCACTGCAGTGGGGCCTGGGCCAAAGAGTGAGACTCCATCTC
5121 AAAAAAAAAAAAAAAGAAAGAAATGTGTTGCTGGTATCAGATATCAGACCAAGAACACTTCAGTCTCTCTAAGGATGCCC
5201 TGAGCTACCTCACTGTTAAAGGACGACATCAACACAGAATGCACTAAACAGGAAATAAGCTGTAATCTAGAGAATTTCCA
5281 TTATGTGTTACTTTTTGGTGACTAACATGGAATGTTGAAAAGGAAGAGCTGGAAAGCTCAGTTGTTTTCCTTGTTCCTCT
5361 GACATTGTCCAGGCAAGAGGGCATCCTGATCAGATGAGTAGATTTGGCTGAGAAAAACCCTAGAGTAAGGCAGGCACTTT
5441 GTGGAGGTGGATGATGATGGCTCATAAAAACGTTTGTTCTCAGTCCAGTTCAGGGCTCTGCCAGCAGTCTTTCAGATCTG
5521 AACTGCTTAAACAAACCCTACAGATAAATTGGCACTCTGATTTGTAATTCTGTTTGTACAAGTTTAGAGCAGCCTAGCTC
5601 GAGTCCTCAACCCCAGTCCTCTTAGAAGTGAACTGATTGCACTGGATCCCTAAACCCACAATGTTGAGGACACATGTGAT
5681 GACTCCACTTGCTCAGCCAGCTGGCCTCTTGCACTTTCCCCTGCCCACCACTTGTAACTACCACTTAATTATCTTGTGTT
5761 AATTGCTTTTGTTGTGTTGGGTCTGTATTTTTGTGGTCAGTGCCTGCAGGCAGAAATGTGAAAGCATTTGGTATGTTGAA
5841 GATACTTGCTTCTTTTTTAATAAAATTAAAAGTGCAGCACGTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugUUUUCAUUGACGUCAAAAAc 5'
            | | ||::   |||||||| 
Target 5' tcATATGTGGAATCAGTTTTTg 3'
 3825 - 3846 152.00 -12.70
2 
miRNA  3' uguuuucAUUGAC-----GUCAAAAAc 5'
                 |::|||     |||||||| 
Target 5' ggccactTGGCTGTTTCACAGTTTTTa 3'
 4178 - 4204 151.00 -9.40
3 
miRNA  3' ugUUUUCAUUGAC--GUCAAAAac 5'
            ||:: |:||||   ||||||  
Target 5' tcAAGGCTGACTGATAAGTTTTaa 3'
 860 - 883 142.00 -13.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN24574326 7 COSMIC
COSN28877469 19 COSMIC
COSN30460538 37 COSMIC
COSN31586525 39 COSMIC
COSN30480734 40 COSMIC
COSN30530099 60 COSMIC
COSN31601961 81 COSMIC
COSN30166118 87 COSMIC
COSN2456080 509 COSMIC
COSN26399448 815 COSMIC
COSN24490653 911 COSMIC
COSN15778085 935 COSMIC
COSN15663380 1802 COSMIC
COSN20114218 1815 COSMIC
COSN20114214 1816 COSMIC
COSN22614543 1999 COSMIC
COSN21731675 2000 COSMIC
COSN2512527 2030 COSMIC
COSN26220387 2815 COSMIC
COSN17075829 2955 COSMIC
COSN16941329 3215 COSMIC
COSN15880253 3442 COSMIC
COSN16356293 3567 COSMIC
COSN7440561 4636 COSMIC
COSN17457424 4928 COSMIC
COSN32153998 5109 COSMIC
COSN29853813 5136 COSMIC
COSN8244342 5344 COSMIC
COSN15976071 5355 COSMIC
COSN25316025 5941 COSMIC
COSN29170190 5967 COSMIC
COSN26707416 6542 COSMIC
COSN19583027 6694 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1467262274 4 dbSNP
rs760862333 8 dbSNP
rs764321176 12 dbSNP
rs376574993 15 dbSNP
rs369090272 16 dbSNP
rs1053908519 20 dbSNP
rs754148566 21 dbSNP
rs753475866 24 dbSNP
rs757291138 26 dbSNP
rs1284008975 27 dbSNP
rs1296496348 28 dbSNP
rs1325859035 29 dbSNP
rs777006912 34 dbSNP
rs757365660 37 dbSNP
rs765717776 39 dbSNP
rs750881561 40 dbSNP
rs759014759 44 dbSNP
rs780538846 47 dbSNP
rs372684580 49 dbSNP
rs755782664 50 dbSNP
rs902987843 52 dbSNP
rs151189920 58 dbSNP
rs1001589433 61 dbSNP
rs1366294622 62 dbSNP
rs757004447 68 dbSNP
rs369803479 79 dbSNP
rs1291248776 81 dbSNP
rs1442677912 85 dbSNP
rs533305488 88 dbSNP
rs878931954 99 dbSNP
rs551660521 103 dbSNP
rs1166148226 119 dbSNP
rs764793945 124 dbSNP
rs1034450974 125 dbSNP
rs894170166 129 dbSNP
rs112031816 134 dbSNP
rs1358846708 146 dbSNP
rs962520326 147 dbSNP
rs1173182979 162 dbSNP
rs1012528909 163 dbSNP
rs1189505468 168 dbSNP
rs1284142003 172 dbSNP
rs1470032484 180 dbSNP
rs749935248 181 dbSNP
rs776715180 188 dbSNP
rs570861218 200 dbSNP
rs1315825494 206 dbSNP
rs1248659034 210 dbSNP
rs982461227 211 dbSNP
rs1015775176 215 dbSNP
rs1298621102 218 dbSNP
rs1235806047 227 dbSNP
rs746212416 228 dbSNP
rs1300225537 229 dbSNP
rs965911703 229 dbSNP
rs56849465 230 dbSNP
rs921509933 239 dbSNP
rs8071009 240 dbSNP
rs1472991602 245 dbSNP
rs1178274480 252 dbSNP
rs1456578545 264 dbSNP
rs1252433043 265 dbSNP
rs1157830870 273 dbSNP
rs936163444 275 dbSNP
rs1254167179 278 dbSNP
rs73327139 280 dbSNP
rs915212284 286 dbSNP
rs946254780 289 dbSNP
rs945457535 290 dbSNP
rs535919612 307 dbSNP
rs1309672010 312 dbSNP
rs1337116085 312 dbSNP
rs1392300063 314 dbSNP
rs1221181291 322 dbSNP
rs1402203072 323 dbSNP
rs1311580353 333 dbSNP
rs1042843000 335 dbSNP
rs554115960 336 dbSNP
rs924491065 341 dbSNP
rs1449878949 342 dbSNP
rs1338261900 346 dbSNP
rs1340752950 350 dbSNP
rs938500679 353 dbSNP
rs1376173313 355 dbSNP
rs116841267 361 dbSNP
rs894380144 362 dbSNP
rs1012745003 365 dbSNP
rs1365724491 368 dbSNP
rs139700082 372 dbSNP
rs80037124 373 dbSNP
rs1230715504 376 dbSNP
rs1212937409 382 dbSNP
rs1485936784 387 dbSNP
rs1003935567 390 dbSNP
rs1213803097 391 dbSNP
rs1015747994 397 dbSNP
rs1268521599 398 dbSNP
rs567068904 401 dbSNP
rs1352453581 407 dbSNP
rs1342047253 410 dbSNP
rs965610555 411 dbSNP
rs1240283514 415 dbSNP
rs1340264679 423 dbSNP
rs1460895684 431 dbSNP
rs1417183689 433 dbSNP
rs1356634444 436 dbSNP
rs1201894721 439 dbSNP
rs1297702266 440 dbSNP
rs1258503337 445 dbSNP
rs1399015089 446 dbSNP
rs995351446 448 dbSNP
rs1159377169 461 dbSNP
rs1443269362 461 dbSNP
rs1415438066 464 dbSNP
rs1025860023 466 dbSNP
rs1475524828 467 dbSNP
rs1262354476 478 dbSNP
rs1230895523 479 dbSNP
rs998759839 482 dbSNP
rs1190483421 485 dbSNP
rs763171942 486 dbSNP
rs1448210011 488 dbSNP
rs1206576127 493 dbSNP
rs1028454692 498 dbSNP
rs1208877166 504 dbSNP
rs1471045130 509 dbSNP
rs954286089 511 dbSNP
rs1271713931 516 dbSNP
rs1235487731 518 dbSNP
rs145444280 523 dbSNP
rs915264766 532 dbSNP
rs1429164087 534 dbSNP
rs1328278994 539 dbSNP
rs966681029 545 dbSNP
rs1386446796 546 dbSNP
rs1008534024 548 dbSNP
rs1166880128 549 dbSNP
rs1461765916 549 dbSNP
rs1422907143 550 dbSNP
rs978229031 552 dbSNP
rs543048566 554 dbSNP
rs1166102722 557 dbSNP
rs1178043216 575 dbSNP
rs1242227446 581 dbSNP
rs1402467196 601 dbSNP
rs1390393890 603 dbSNP
rs561703736 609 dbSNP
rs764097144 610 dbSNP
rs1412100676 616 dbSNP
rs963667174 632 dbSNP
rs975082432 633 dbSNP
rs573703516 635 dbSNP
rs1057367592 651 dbSNP
rs957745185 657 dbSNP
rs1323507087 666 dbSNP
rs562375485 667 dbSNP
rs1270897958 668 dbSNP
rs915709913 670 dbSNP
rs1369139526 673 dbSNP
rs1328161283 678 dbSNP
rs1221747243 687 dbSNP
rs948651686 706 dbSNP
rs1048274125 709 dbSNP
rs1411636142 717 dbSNP
rs774442224 721 dbSNP
rs946253255 725 dbSNP
rs1345811026 727 dbSNP
rs1046385451 733 dbSNP
rs928901732 734 dbSNP
rs937319142 737 dbSNP
rs147694297 740 dbSNP
rs1202841644 746 dbSNP
rs1440097224 748 dbSNP
rs1004279135 751 dbSNP
rs1036822184 755 dbSNP
rs898503626 759 dbSNP
rs1182699645 761 dbSNP
rs1345840116 764 dbSNP
rs9897759 765 dbSNP
rs1372815229 768 dbSNP
rs1479455479 773 dbSNP
rs1047156288 775 dbSNP
rs886919416 776 dbSNP
rs1333444568 777 dbSNP
rs1432711300 784 dbSNP
rs1461064951 785 dbSNP
rs1376778265 794 dbSNP
rs997914476 795 dbSNP
rs1019480933 797 dbSNP
rs1431991722 798 dbSNP
rs544993363 803 dbSNP
rs954171850 805 dbSNP
rs1187874851 808 dbSNP
rs1403565230 809 dbSNP
rs1011187633 816 dbSNP
rs187993549 817 dbSNP
rs957737735 820 dbSNP
rs1022540348 834 dbSNP
rs748317890 835 dbSNP
rs978492934 844 dbSNP
rs769980792 859 dbSNP
rs928870712 862 dbSNP
rs937539980 892 dbSNP
rs1418558584 898 dbSNP
rs759687377 899 dbSNP
rs1290680229 906 dbSNP
rs1489802995 916 dbSNP
rs1400864639 918 dbSNP
rs565052696 919 dbSNP
rs527500094 923 dbSNP
rs991750674 923 dbSNP
rs1268009429 930 dbSNP
rs990890796 933 dbSNP
rs1047573307 943 dbSNP
rs1190460104 946 dbSNP
rs1485590436 949 dbSNP
rs887232592 950 dbSNP
rs1218250502 953 dbSNP
rs1317691813 956 dbSNP
rs142320562 958 dbSNP
rs1231193872 965 dbSNP
rs1293818536 966 dbSNP
rs1336941981 966 dbSNP
rs530806980 974 dbSNP
rs1381521230 976 dbSNP
rs915762219 978 dbSNP
rs1162540250 987 dbSNP
rs943865033 1002 dbSNP
rs948536641 1007 dbSNP
rs193057611 1011 dbSNP
rs899684210 1012 dbSNP
rs1420398636 1022 dbSNP
rs996687939 1022 dbSNP
rs1428399267 1026 dbSNP
rs909801067 1026 dbSNP
rs1381711123 1028 dbSNP
rs939914739 1037 dbSNP
rs1293610193 1060 dbSNP
rs1417487423 1062 dbSNP
rs778009885 1069 dbSNP
rs1229342211 1070 dbSNP
rs568437249 1075 dbSNP
rs900810626 1076 dbSNP
rs1211651703 1078 dbSNP
rs529483656 1079 dbSNP
rs1273509759 1101 dbSNP
rs1226647771 1102 dbSNP
rs933756283 1103 dbSNP
rs1305648737 1104 dbSNP
rs555857283 1105 dbSNP
rs1223545990 1106 dbSNP
rs771100668 1113 dbSNP
rs970544405 1118 dbSNP
rs1265937014 1122 dbSNP
rs1353234910 1127 dbSNP
rs1461964406 1127 dbSNP
rs1172709136 1130 dbSNP
rs1429187786 1140 dbSNP
rs1011069741 1141 dbSNP
rs1485535717 1145 dbSNP
rs1022590996 1157 dbSNP
rs981862249 1158 dbSNP
rs1464965613 1169 dbSNP
rs1182544065 1176 dbSNP
rs184231870 1183 dbSNP
rs150196944 1185 dbSNP
rs1205060172 1187 dbSNP
rs991717801 1192 dbSNP
rs999748277 1197 dbSNP
rs1369549439 1202 dbSNP
rs372916146 1206 dbSNP
rs145850210 1211 dbSNP
rs760094271 1213 dbSNP
rs1391172168 1215 dbSNP
rs1435948573 1216 dbSNP
rs991334982 1218 dbSNP
rs7220789 1222 dbSNP
rs1430883374 1236 dbSNP
rs1374959791 1237 dbSNP
rs1171795998 1250 dbSNP
rs1436875456 1261 dbSNP
rs1378394835 1266 dbSNP
rs1336288165 1270 dbSNP
rs982841767 1273 dbSNP
rs1417093608 1284 dbSNP
rs908539508 1286 dbSNP
rs1177739195 1291 dbSNP
rs944101477 1291 dbSNP
rs1277635278 1304 dbSNP
rs1023668605 1305 dbSNP
rs969905453 1311 dbSNP
rs983922124 1316 dbSNP
rs1259770733 1319 dbSNP
rs1380918175 1321 dbSNP
rs909684920 1332 dbSNP
rs1313245710 1339 dbSNP
rs1411001261 1343 dbSNP
rs1355363382 1347 dbSNP
rs1311186014 1348 dbSNP
rs1416697543 1362 dbSNP
rs1992554 1365 dbSNP
rs865887068 1366 dbSNP
rs972654515 1372 dbSNP
rs1451840543 1378 dbSNP
rs922286803 1388 dbSNP
rs776022902 1390 dbSNP
rs188335967 1391 dbSNP
rs1202524207 1393 dbSNP
rs1042017884 1401 dbSNP
rs761174282 1404 dbSNP
rs906200315 1405 dbSNP
rs764955470 1406 dbSNP
rs1203040111 1408 dbSNP
rs76868519 1415 dbSNP
rs958844215 1417 dbSNP
rs1229365204 1421 dbSNP
rs1013121392 1422 dbSNP
rs1291967654 1425 dbSNP
rs1043923745 1430 dbSNP
rs1418887433 1433 dbSNP
rs1341176202 1437 dbSNP
rs1317663197 1440 dbSNP
rs1027646349 1441 dbSNP
rs902651939 1445 dbSNP
rs377440138 1446 dbSNP
rs1457817056 1450 dbSNP
rs983444019 1462 dbSNP
rs1035259969 1463 dbSNP
rs1357640950 1466 dbSNP
rs1450384472 1467 dbSNP
rs908508495 1471 dbSNP
rs1372278067 1472 dbSNP
rs1407797131 1476 dbSNP
rs762306462 1486 dbSNP
rs976786507 1492 dbSNP
rs1190374020 1498 dbSNP
rs1448415350 1513 dbSNP
rs1248259406 1515 dbSNP
rs576356045 1516 dbSNP
rs149000951 1517 dbSNP
rs1468319965 1520 dbSNP
rs76562792 1536 dbSNP
rs1235700195 1538 dbSNP
rs1357640150 1539 dbSNP
rs952139576 1540 dbSNP
rs573538811 1541 dbSNP
rs540770501 1546 dbSNP
rs1328480182 1550 dbSNP
rs1313457443 1551 dbSNP
rs1053588879 1559 dbSNP
rs1392061859 1564 dbSNP
rs1327613589 1565 dbSNP
rs1405934649 1570 dbSNP
rs1395650873 1612 dbSNP
rs559462617 1619 dbSNP
rs1165721794 1626 dbSNP
rs1476103334 1627 dbSNP
rs12936251 1629 dbSNP
rs751407024 1632 dbSNP
rs1452126943 1635 dbSNP
rs577927283 1643 dbSNP
rs1224194393 1648 dbSNP
rs961220748 1649 dbSNP
rs1452759426 1653 dbSNP
rs945279973 1654 dbSNP
rs192170012 1657 dbSNP
rs1298373482 1658 dbSNP
rs139901853 1658 dbSNP
rs1254577127 1676 dbSNP
rs1233875344 1686 dbSNP
rs1369023982 1694 dbSNP
rs1305409109 1700 dbSNP
rs1436930119 1710 dbSNP
rs1473243098 1714 dbSNP
rs545255395 1718 dbSNP
rs1326792088 1722 dbSNP
rs955253444 1725 dbSNP
rs1411550194 1726 dbSNP
rs1370655675 1728 dbSNP
rs781149394 1735 dbSNP
rs894932845 1738 dbSNP
rs1416263290 1748 dbSNP
rs758008582 1753 dbSNP
rs1354203175 1761 dbSNP
rs1427552602 1778 dbSNP
rs994590315 1780 dbSNP
rs946462741 1784 dbSNP
rs1043471920 1785 dbSNP
rs1350894305 1799 dbSNP
rs1404200115 1800 dbSNP
rs371346240 1801 dbSNP
rs112514582 1802 dbSNP
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rs1219980668 1802 dbSNP
rs375674589 1802 dbSNP
rs376773815 1802 dbSNP
rs369782069 1803 dbSNP
rs935499136 1804 dbSNP
rs563448447 1805 dbSNP
rs1004442601 1806 dbSNP
rs530871360 1807 dbSNP
rs1012419548 1808 dbSNP
rs1376680188 1809 dbSNP
rs1045058546 1815 dbSNP
rs1399714934 1816 dbSNP
rs33932456 1816 dbSNP
rs1483592850 1817 dbSNP
rs1222333292 1818 dbSNP
rs1245512453 1820 dbSNP
rs752468055 1826 dbSNP
rs1157173164 1841 dbSNP
rs1191891993 1844 dbSNP
rs1419053835 1846 dbSNP
rs1447820528 1848 dbSNP
rs1239218781 1866 dbSNP
rs1211110622 1867 dbSNP
rs1446611401 1876 dbSNP
rs1281932996 1878 dbSNP
rs1170735625 1879 dbSNP
rs1329838657 1882 dbSNP
rs1292610477 1884 dbSNP
rs1231308558 1900 dbSNP
rs887757623 1903 dbSNP
rs976753975 1907 dbSNP
rs1423697687 1920 dbSNP
rs1423808043 1921 dbSNP
rs1321476063 1923 dbSNP
rs563985922 1933 dbSNP
rs1014998212 1939 dbSNP
rs561942817 1941 dbSNP
rs17833555 1945 dbSNP
rs1029869668 1952 dbSNP
rs1474491923 1962 dbSNP
rs1269148084 1966 dbSNP
rs1416109315 1981 dbSNP
rs777967354 1982 dbSNP
rs985343003 1984 dbSNP
rs915051025 1988 dbSNP
rs116921095 1998 dbSNP
rs967687797 1999 dbSNP
rs1465184908 2007 dbSNP
rs1272269300 2008 dbSNP
rs1211765046 2012 dbSNP
rs184057905 2015 dbSNP
rs1343266903 2017 dbSNP
rs1228148186 2022 dbSNP
rs1288321149 2031 dbSNP
rs1359507303 2039 dbSNP
rs923704926 2055 dbSNP
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rs551606901 2072 dbSNP
rs1056643748 2080 dbSNP
rs1389885870 2083 dbSNP
rs370735626 2084 dbSNP
rs1388796941 2087 dbSNP
rs1456872327 2090 dbSNP
rs918050206 2098 dbSNP
rs1428007122 2101 dbSNP
rs1241537654 2106 dbSNP
rs894819881 2119 dbSNP
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rs930349690 2146 dbSNP
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rs35200494 5292 dbSNP
rs1347629222 5293 dbSNP
rs1294280913 5301 dbSNP
rs988711226 5308 dbSNP
rs990341204 5315 dbSNP
rs1204302033 5326 dbSNP
rs913360526 5331 dbSNP
rs1410446449 5339 dbSNP
rs946338073 5342 dbSNP
rs1428064382 5348 dbSNP
rs1173624481 5391 dbSNP
rs1249578374 5392 dbSNP
rs1045949545 5395 dbSNP
rs1176216640 5402 dbSNP
rs980134482 5404 dbSNP
rs907247131 5405 dbSNP
rs1439019706 5416 dbSNP
rs755512229 5420 dbSNP
rs1231499861 5421 dbSNP
rs926985062 5426 dbSNP
rs1319207660 5432 dbSNP
rs937341610 5433 dbSNP
rs1181976331 5447 dbSNP
rs1221779269 5453 dbSNP
rs1055683551 5454 dbSNP
rs150481502 5456 dbSNP
rs1302287992 5457 dbSNP
rs1391013602 5464 dbSNP
rs750943928 5472 dbSNP
rs941076417 5475 dbSNP
rs1027509959 5476 dbSNP
rs1397227266 5480 dbSNP
rs886255275 5482 dbSNP
rs1174104677 5483 dbSNP
rs1435777805 5484 dbSNP
rs756566548 5492 dbSNP
rs1004830638 5497 dbSNP
rs1157969602 5498 dbSNP
rs1018863535 5507 dbSNP
rs1416914426 5513 dbSNP
rs868074308 5514 dbSNP
rs929504624 5516 dbSNP
rs1992553 5519 dbSNP
rs183378644 5526 dbSNP
rs890747967 5528 dbSNP
rs1009106238 5538 dbSNP
rs1462745944 5542 dbSNP
rs1039413751 5547 dbSNP
rs1238679778 5560 dbSNP
rs1315349191 5564 dbSNP
rs1309337620 5581 dbSNP
rs900514586 5582 dbSNP
rs1000667162 5593 dbSNP
rs1033123745 5594 dbSNP
rs1329545005 5599 dbSNP
rs974406579 5601 dbSNP
rs1458004920 5602 dbSNP
rs1454481606 5606 dbSNP
rs955847331 5607 dbSNP
rs1010110448 5615 dbSNP
rs749633551 5625 dbSNP
rs1450916124 5633 dbSNP
rs1024145483 5634 dbSNP
rs1158826477 5641 dbSNP
rs1440732375 5643 dbSNP
rs374651801 5649 dbSNP
rs113576184 5650 dbSNP
rs1257034893 5659 dbSNP
rs1434516963 5663 dbSNP
rs957155094 5666 dbSNP
rs926926645 5674 dbSNP
rs990282057 5676 dbSNP
rs1217565743 5682 dbSNP
rs913423160 5690 dbSNP
rs1348286494 5691 dbSNP
rs540859390 5693 dbSNP
rs946199168 5701 dbSNP
rs1227453779 5702 dbSNP
rs962427934 5703 dbSNP
rs974215990 5707 dbSNP
rs1341466947 5709 dbSNP
rs1196324181 5711 dbSNP
rs1265999646 5713 dbSNP
rs1449409275 5726 dbSNP
rs981698365 5728 dbSNP
rs565478700 5729 dbSNP
rs928894024 5732 dbSNP
rs1054587123 5741 dbSNP
rs1454974868 5742 dbSNP
rs1168425501 5761 dbSNP
rs1369559112 5767 dbSNP
rs937561049 5772 dbSNP
rs913004504 5781 dbSNP
rs1169017554 5782 dbSNP
rs748533908 5784 dbSNP
rs532897254 5794 dbSNP
rs1289409516 5803 dbSNP
rs1224462538 5813 dbSNP
rs1385199367 5819 dbSNP
rs185940931 5830 dbSNP
rs562509013 5832 dbSNP
rs1465973072 5837 dbSNP
rs944924742 5844 dbSNP
rs376271388 5846 dbSNP
rs900484464 5852 dbSNP
rs548280361 5858 dbSNP
rs1343264155 5863 dbSNP
rs544053709 5873 dbSNP
rs1388904779 5878 dbSNP
rs1047579869 5881 dbSNP
rs1054539014 5882 dbSNP
rs1425942621 5883 dbSNP
rs1171471291 5885 dbSNP
rs891844814 5886 dbSNP
rs886305260 5891 dbSNP
rs146637577 5893 dbSNP
rs1018748572 5896 dbSNP
rs1452008086 5909 dbSNP
rs1249533572 5911 dbSNP
rs901767063 5915 dbSNP
rs1215087417 5923 dbSNP
rs1273423146 5924 dbSNP
rs996064101 5925 dbSNP
rs1222390810 5927 dbSNP
rs1028675559 5932 dbSNP
rs1320732129 5939 dbSNP
rs957242714 5943 dbSNP
rs1024114333 5946 dbSNP
rs770124907 5974 dbSNP
rs1464112101 5982 dbSNP
rs1186292764 5984 dbSNP
rs1034298500 5988 dbSNP
rs1403091887 5993 dbSNP
rs1011353655 6003 dbSNP
rs1332576557 6005 dbSNP
rs1469383257 6012 dbSNP
rs1427256137 6018 dbSNP
rs1174584265 6020 dbSNP
rs1260023425 6029 dbSNP
rs1478473640 6029 dbSNP
rs1363083383 6031 dbSNP
rs1179405474 6037 dbSNP
rs1430692559 6038 dbSNP
rs7209070 6043 dbSNP
rs967062567 6046 dbSNP
rs981584919 6051 dbSNP
rs191183588 6057 dbSNP
rs1202911269 6081 dbSNP
rs928779427 6082 dbSNP
rs1280094691 6090 dbSNP
rs1219504122 6093 dbSNP
rs771707647 6095 dbSNP
rs973804819 6098 dbSNP
rs958967959 6099 dbSNP
rs1238447376 6101 dbSNP
rs1167271056 6102 dbSNP
rs1025267055 6105 dbSNP
rs141329431 6109 dbSNP
rs986526649 6110 dbSNP
rs1404076045 6115 dbSNP
rs111580249 6120 dbSNP
rs919970582 6124 dbSNP
rs1336245726 6139 dbSNP
rs931296222 6150 dbSNP
rs145118230 6154 dbSNP
rs1386834039 6157 dbSNP
rs569253680 6166 dbSNP
rs1380643595 6168 dbSNP
rs1382621389 6169 dbSNP
rs908621402 6185 dbSNP
rs1442681553 6189 dbSNP
rs944918344 6190 dbSNP
rs944068840 6199 dbSNP
rs538599494 6201 dbSNP
rs536286278 6219 dbSNP
rs1235069628 6222 dbSNP
rs1040243404 6231 dbSNP
rs1327888713 6234 dbSNP
rs141180992 6248 dbSNP
rs1206389899 6254 dbSNP
rs112139864 6255 dbSNP
rs57702000 6255 dbSNP
rs866387830 6255 dbSNP
rs67239944 6256 dbSNP
rs1356355187 6257 dbSNP
rs372010199 6257 dbSNP
rs1205859736 6259 dbSNP
rs371235610 6259 dbSNP
rs975389264 6260 dbSNP
rs371999629 6261 dbSNP
rs375586039 6262 dbSNP
rs1262160859 6268 dbSNP
rs1245979689 6275 dbSNP
rs922244714 6287 dbSNP
rs879482256 6307 dbSNP
rs1487040759 6310 dbSNP
rs901652511 6313 dbSNP
rs374550525 6314 dbSNP
rs996118306 6316 dbSNP
rs1050759009 6318 dbSNP
rs554929588 6319 dbSNP
rs1190727729 6321 dbSNP
rs1418615958 6323 dbSNP
rs1472329165 6324 dbSNP
rs1045870911 6327 dbSNP
rs1011661285 6340 dbSNP
rs1415890541 6348 dbSNP
rs1182326796 6350 dbSNP
rs1347237520 6352 dbSNP
rs1239840294 6354 dbSNP
rs11653161 6358 dbSNP
rs967114957 6361 dbSNP
rs775011225 6364 dbSNP
rs540724227 6377 dbSNP
rs1373413522 6378 dbSNP
rs1222237631 6380 dbSNP
rs1320244877 6388 dbSNP
rs760216372 6392 dbSNP
rs1313438771 6393 dbSNP
rs1338874730 6394 dbSNP
rs1002555706 6398 dbSNP
rs1349299690 6420 dbSNP
rs1402151250 6424 dbSNP
rs1341365390 6425 dbSNP
rs1035845042 6426 dbSNP
rs137922082 6427 dbSNP
rs1434057059 6435 dbSNP
rs995837893 6437 dbSNP
rs1308676337 6443 dbSNP
rs759618012 6452 dbSNP
rs1317212318 6454 dbSNP
rs991791891 6456 dbSNP
rs577466961 6457 dbSNP
rs986496955 6477 dbSNP
rs1019353625 6478 dbSNP
rs549207379 6478 dbSNP
rs906911815 6479 dbSNP
rs202188367 6481 dbSNP
rs1267766083 6482 dbSNP
rs1002192660 6483 dbSNP
rs1487730548 6492 dbSNP
rs1213608956 6495 dbSNP
rs1248793949 6501 dbSNP
rs974980464 6503 dbSNP
rs1437751448 6505 dbSNP
rs983194073 6506 dbSNP
rs1482762478 6510 dbSNP
rs908512325 6513 dbSNP
rs1311036683 6520 dbSNP
rs1282917805 6523 dbSNP
rs1217666611 6529 dbSNP
rs759564781 6530 dbSNP
rs944121333 6535 dbSNP
rs544912099 6540 dbSNP
rs1410265632 6550 dbSNP
rs572764878 6552 dbSNP
rs936235859 6563 dbSNP
rs1419836524 6565 dbSNP
rs1333233325 6567 dbSNP
rs1465722257 6571 dbSNP
rs563007919 6576 dbSNP
rs183669779 6577 dbSNP
rs913216134 6578 dbSNP
rs1427774405 6583 dbSNP
rs149478586 6590 dbSNP
rs1174156852 6593 dbSNP
rs1480476872 6603 dbSNP
rs1236908304 6628 dbSNP
rs1201029251 6629 dbSNP
rs1369934941 6636 dbSNP
rs1045840919 6649 dbSNP
rs931794638 6653 dbSNP
rs1208366972 6654 dbSNP
rs1439388658 6660 dbSNP
rs907323370 6661 dbSNP
rs1050230971 6663 dbSNP
rs1299318883 6672 dbSNP
rs1373443528 6673 dbSNP
rs1385839488 6674 dbSNP
rs559714148 6681 dbSNP
rs1346141774 6682 dbSNP
rs527425429 6692 dbSNP
rs1311427948 6696 dbSNP
rs1281666626 6697 dbSNP
rs1341995619 6698 dbSNP
rs1447393009 6705 dbSNP
rs551812788 6713 dbSNP
rs1210225796 6725 dbSNP
rs570313826 6727 dbSNP
rs533817167 6736 dbSNP
rs1481016796 6745 dbSNP
rs902840786 6755 dbSNP
rs1467068433 6756 dbSNP
rs151051114 6758 dbSNP
rs57422384 6758 dbSNP
rs1251421927 6760 dbSNP
rs1455408347 6762 dbSNP
rs1002609433 6766 dbSNP
rs1035396384 6772 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000284061.3 | 3UTR | UGAAGUUUUUCUGCUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
269 hsa-miR-548am-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055351 PDCD4 programmed cell death 4 2 2
MIRT078712 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT088882 FOXN2 forkhead box N2 2 10
MIRT099614 ID4 inhibitor of DNA binding 4, HLH protein 2 4
MIRT111809 MPZL1 myelin protein zero like 1 2 2
MIRT166785 PAPD7 poly(A) RNA polymerase D7, non-canonical 2 2
MIRT221312 LMBR1 limb development membrane protein 1 2 2
MIRT269389 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT309064 C4ORF3 chromosome 4 open reading frame 3 2 2
MIRT318552 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT325438 CKS2 CDC28 protein kinase regulatory subunit 2 2 2
MIRT331328 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT336804 ARF1 ADP ribosylation factor 1 2 4
MIRT350507 MRGBP MRG domain binding protein 2 6
MIRT374403 M6PR mannose-6-phosphate receptor, cation dependent 2 4
MIRT399359 IER2 immediate early response 2 2 2
MIRT401035 MOB1B MOB kinase activator 1B 2 4
MIRT441727 HAUS6 HAUS augmin like complex subunit 6 2 2
MIRT442379 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT442405 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT443987 GJD3 gap junction protein delta 3 2 4
MIRT444045 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT444243 CHMP1B charged multivesicular body protein 1B 2 2
MIRT444400 FRMD5 FERM domain containing 5 2 2
MIRT444461 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT444642 HSBP1 heat shock factor binding protein 1 2 2
MIRT444853 EXD2 exonuclease 3'-5' domain containing 2 2 2
MIRT444986 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT445105 ZNF207 zinc finger protein 207 2 2
MIRT445447 HSPA14 heat shock protein family A (Hsp70) member 14 2 4
MIRT445513 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 4
MIRT445588 RCC2 regulator of chromosome condensation 2 2 2
MIRT445677 TNFSF15 TNF superfamily member 15 2 2
MIRT445731 PGK1 phosphoglycerate kinase 1 2 2
MIRT445825 DNAAF3 dynein axonemal assembly factor 3 2 2
MIRT445994 CD1D CD1d molecule 2 2
MIRT446066 RABIF RAB interacting factor 2 2
MIRT446144 ST6GAL2 ST6 beta-galactoside alpha-2,6-sialyltransferase 2 2 2
MIRT446300 ACSL3 acyl-CoA synthetase long chain family member 3 2 2
MIRT446424 ABHD2 abhydrolase domain containing 2 2 2
MIRT447261 C3orf30 chromosome 3 open reading frame 30 2 2
MIRT447690 MTPAP mitochondrial poly(A) polymerase 2 2
MIRT447751 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT447881 LMAN1 lectin, mannose binding 1 2 2
MIRT448030 GSR glutathione-disulfide reductase 2 2
MIRT448153 P2RY10 purinergic receptor P2Y10 2 2
MIRT448213 SNAI2 snail family transcriptional repressor 2 2 2
MIRT448412 TNFAIP3 TNF alpha induced protein 3 2 2
MIRT448888 DENND4C DENN domain containing 4C 2 2
MIRT449041 ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif 5 2 2
MIRT449267 PALM2 paralemmin 2 2 2
MIRT449569 GPC5 glypican 5 2 4
MIRT450114 IMP3 IMP3, U3 small nucleolar ribonucleoprotein 2 2
MIRT450147 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit 2 2
MIRT450604 EXOC2 exocyst complex component 2 2 2
MIRT459245 ADRBK1 G protein-coupled receptor kinase 2 2 2
MIRT464462 UGCG UDP-glucose ceramide glucosyltransferase 2 2
MIRT465112 TSC22D2 TSC22 domain family member 2 2 4
MIRT466776 SUZ12 SUZ12 polycomb repressive complex 2 subunit 2 4
MIRT467988 SKIL SKI like proto-oncogene 2 4
MIRT469261 RHOB ras homolog family member B 2 2
MIRT470715 POGK pogo transposable element derived with KRAB domain 2 2
MIRT472378 NEK7 NIMA related kinase 7 2 2
MIRT475020 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT475246 IGF2BP3 insulin like growth factor 2 mRNA binding protein 3 2 2
MIRT475676 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT479403 CDKN1B cyclin dependent kinase inhibitor 1B 2 10
MIRT482619 ABCE1 ATP binding cassette subfamily E member 1 2 2
MIRT490486 FEM1C fem-1 homolog C 2 2
MIRT492174 SOX4 SRY-box 4 2 10
MIRT493557 HSPA5 heat shock protein family A (Hsp70) member 5 2 2
MIRT494645 ARNTL aryl hydrocarbon receptor nuclear translocator like 2 2
MIRT497508 ZNF652 zinc finger protein 652 2 4
MIRT499148 HSPA1B heat shock protein family A (Hsp70) member 1B 2 8
MIRT502079 KRAS KRAS proto-oncogene, GTPase 2 2
MIRT502822 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 6
MIRT503934 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504227 MYO6 myosin VI 2 2
MIRT506014 PURA purine rich element binding protein A 2 2
MIRT506414 NHLRC3 NHL repeat containing 3 2 6
MIRT508020 BCAT1 branched chain amino acid transaminase 1 2 4
MIRT508291 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT508356 HES7 hes family bHLH transcription factor 7 2 6
MIRT510846 RARB retinoic acid receptor beta 2 6
MIRT511507 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT511978 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 4
MIRT512299 AMER1 APC membrane recruitment protein 1 2 6
MIRT515649 MYBPC1 myosin binding protein C, slow type 2 2
MIRT518421 SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase 2 2
MIRT519690 ZNF620 zinc finger protein 620 2 2
MIRT521596 PSMA2 proteasome subunit alpha 2 2 4
MIRT527239 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT527277 FBLN2 fibulin 2 2 2
MIRT527375 MGARP mitochondria localized glutamic acid rich protein 2 2
MIRT527446 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT528340 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529096 ZNF100 zinc finger protein 100 2 2
MIRT529659 ZNF81 zinc finger protein 81 2 2
MIRT530055 TRIM72 tripartite motif containing 72 2 2
MIRT530269 MKRN3 makorin ring finger protein 3 2 2
MIRT530871 TRUB1 TruB pseudouridine synthase family member 1 2 2
MIRT531244 FANCC Fanconi anemia complementation group C 2 2
MIRT531406 TMEM18 transmembrane protein 18 2 2
MIRT534419 SEMA4F ssemaphorin 4F 2 2
MIRT534498 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT534763 RASGEF1A RasGEF domain family member 1A 2 2
MIRT534940 PTBP3 polypyrimidine tract binding protein 3 2 2
MIRT536970 HAS3 hyaluronan synthase 3 2 2
MIRT537631 ERI1 exoribonuclease 1 2 2
MIRT537718 ELK3 ELK3, ETS transcription factor 2 2
MIRT538770 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT540956 SLC25A43 solute carrier family 25 member 43 2 2
MIRT541272 GPC4 glypican 4 2 4
MIRT543345 ZNF829 zinc finger protein 829 2 2
MIRT543615 MFAP3 microfibril associated protein 3 2 2
MIRT543642 YY2 YY2 transcription factor 2 2
MIRT544225 GTF2B general transcription factor IIB 2 2
MIRT544411 ZSCAN12 zinc finger and SCAN domain containing 12 2 2
MIRT544937 SNCB synuclein beta 2 2
MIRT545319 SPC25 SPC25, NDC80 kinetochore complex component 2 2
MIRT546086 VEZF1 vascular endothelial zinc finger 1 2 2
MIRT548514 DYNC1LI2 dynein cytoplasmic 1 light intermediate chain 2 2 2
MIRT548630 DAZAP1 DAZ associated protein 1 2 4
MIRT551026 SPPL3 signal peptide peptidase like 3 2 2
MIRT552056 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 4
MIRT553266 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT553295 TSPAN3 tetraspanin 3 2 2
MIRT553611 TM7SF3 transmembrane 7 superfamily member 3 2 2
MIRT554199 SLC35D1 solute carrier family 35 member D1 2 2
MIRT554793 RGPD4 RANBP2-like and GRIP domain containing 4 2 2
MIRT554836 RECK reversion inducing cysteine rich protein with kazal motifs 2 2
MIRT555707 PDZD8 PDZ domain containing 8 2 2
MIRT556061 MTF2 metal response element binding transcription factor 2 2 4
MIRT557997 FAM160B1 family with sequence similarity 160 member B1 2 2
MIRT558672 CNIH cornichon family AMPA receptor auxiliary protein 1 1 1
MIRT558952 CBFB core-binding factor beta subunit 2 2
MIRT559024 C20orf24 chromosome 20 open reading frame 24 2 2
MIRT559100 C18orf25 chromosome 18 open reading frame 25 2 2
MIRT559856 GSKIP GSK3B interacting protein 2 2
MIRT561589 SKI SKI proto-oncogene 2 2
MIRT562260 GRB2 growth factor receptor bound protein 2 2 2
MIRT562411 EIF2S2 eukaryotic translation initiation factor 2 subunit beta 2 2
MIRT562644 ARID1A AT-rich interaction domain 1A 2 4
MIRT564271 DEPDC1B DEP domain containing 1B 2 2
MIRT565299 TMEM64 transmembrane protein 64 2 2
MIRT565391 TGFBR3 transforming growth factor beta receptor 3 2 2
MIRT566562 OTUD4 OTU deubiquitinase 4 2 2
MIRT566706 MTMR3 myotubularin related protein 3 2 2
MIRT566782 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 2
MIRT568409 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT571816 PHF19 PHD finger protein 19 2 2
MIRT571987 HOXA9 homeobox A9 2 2
MIRT573748 KHSRP KH-type splicing regulatory protein 2 2
MIRT573991 DDX21 DExD-box helicase 21 2 2
MIRT574486 RPS16 ribosomal protein S16 2 2
MIRT574505 PSAT1 phosphoserine aminotransferase 1 2 2
MIRT574551 NRBF2 nuclear receptor binding factor 2 2 2
MIRT576678 H6pd hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 2 2
MIRT608351 ZRANB1 zinc finger RANBP2-type containing 1 2 2
MIRT608632 ATP9A ATPase phospholipid transporting 9A (putative) 2 6
MIRT609177 ZNF581 zinc finger protein 581 2 2
MIRT609790 NHSL1 NHS like 1 2 2
MIRT610673 SYT2 synaptotagmin 2 2 4
MIRT610878 NUDCD3 NudC domain containing 3 2 2
MIRT611022 KCNK10 potassium two pore domain channel subfamily K member 10 2 2
MIRT611668 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT612065 PDGFRA platelet derived growth factor receptor alpha 2 2
MIRT612484 SLC25A11 solute carrier family 25 member 11 2 2
MIRT612646 PSPC1 paraspeckle component 1 2 2
MIRT612686 PLXNA4 plexin A4 2 2
MIRT613106 ESR1 estrogen receptor 1 2 2
MIRT613547 AMPD3 adenosine monophosphate deaminase 3 2 2
MIRT614530 SUB1 SUB1 homolog, transcriptional regulator 2 2
MIRT614567 GMPR guanosine monophosphate reductase 2 2
MIRT614659 ZNF608 zinc finger protein 608 2 2
MIRT614673 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT615311 CCDC158 coiled-coil domain containing 158 2 2
MIRT616110 GGCX gamma-glutamyl carboxylase 2 2
MIRT617748 MICA MHC class I polypeptide-related sequence A 2 2
MIRT618795 ZIC2 Zic family member 2 2 2
MIRT619225 FUNDC2 FUN14 domain containing 2 2 2
MIRT620279 SLCO3A1 solute carrier organic anion transporter family member 3A1 2 2
MIRT620489 XKR6 XK related 6 2 2
MIRT622611 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT622965 OXSR1 oxidative stress responsive 1 2 2
MIRT623480 KDM5A lysine demethylase 5A 2 2
MIRT623624 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 2 2
MIRT623697 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT624813 ADAM17 ADAM metallopeptidase domain 17 2 2
MIRT625186 GRIK4 glutamate ionotropic receptor kainate type subunit 4 2 2
MIRT625365 CDKL2 cyclin dependent kinase like 2 2 2
MIRT625917 GBP6 guanylate binding protein family member 6 2 2
MIRT625960 RNF2 ring finger protein 2 2 2
MIRT626262 CLN8 CLN8, transmembrane ER and ERGIC protein 2 2
MIRT626423 ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 2 2
MIRT626849 FDX1 ferredoxin 1 2 2
MIRT628012 MEF2C myocyte enhancer factor 2C 2 2
MIRT628045 LIMD1 LIM domains containing 1 2 2
MIRT628358 CCDC117 coiled-coil domain containing 117 2 2
MIRT628459 ANAPC16 anaphase promoting complex subunit 16 2 2
MIRT630927 UNC93A unc-93 homolog A 2 2
MIRT635224 CD59 CD59 molecule (CD59 blood group) 2 2
MIRT635476 VCAM1 vascular cell adhesion molecule 1 2 2
MIRT638147 TTC26 tetratricopeptide repeat domain 26 2 2
MIRT638293 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT638429 PNRC1 proline rich nuclear receptor coactivator 1 2 2
MIRT640273 TCF24 transcription factor 24 2 2
MIRT641181 STX4 syntaxin 4 2 2
MIRT642293 ZNF99 zinc finger protein 99 2 2
MIRT643268 ZNF566 zinc finger protein 566 2 2
MIRT643579 CTNNA3 catenin alpha 3 2 2
MIRT644171 GIN1 gypsy retrotransposon integrase 1 2 2
MIRT644431 VDR vitamin D receptor 2 2
MIRT644612 C17orf77 chromosome 17 open reading frame 77 2 2
MIRT644853 PGM2 phosphoglucomutase 2 2 2
MIRT645447 ATF6B activating transcription factor 6 beta 2 2
MIRT647201 ZNF583 zinc finger protein 583 2 2
MIRT649419 CDC14B cell division cycle 14B 2 2
MIRT650497 UFM1 ubiquitin fold modifier 1 2 2
MIRT650693 CLNK cytokine dependent hematopoietic cell linker 2 2
MIRT651207 ZNF280B zinc finger protein 280B 2 2
MIRT653780 SIX4 SIX homeobox 4 2 2
MIRT655055 PKN2 protein kinase N2 2 2
MIRT655705 NUDT21 nudix hydrolase 21 2 2
MIRT656941 KIAA1456 KIAA1456 2 2
MIRT658273 FAXC failed axon connections homolog 2 2
MIRT658517 ETV3 ETS variant 3 2 2
MIRT658653 ENAH ENAH, actin regulator 2 2
MIRT658686 EMP2 epithelial membrane protein 2 2 2
MIRT659239 CXCR5 C-X-C motif chemokine receptor 5 2 2
MIRT659287 CTDSPL2 CTD small phosphatase like 2 2 2
MIRT660099 BTBD3 BTB domain containing 3 2 2
MIRT660461 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT663646 INTU inturned planar cell polarity protein 2 2
MIRT664063 KIAA1551 KIAA1551 2 2
MIRT666138 SPATS2L spermatogenesis associated serine rich 2 like 2 2
MIRT675547 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT684996 RPL10A ribosomal protein L10a 2 2
MIRT685685 TRIM45 tripartite motif containing 45 2 2
MIRT687483 NHLRC2 NHL repeat containing 2 2 2
MIRT687797 KCNJ15 potassium voltage-gated channel subfamily J member 15 2 2
MIRT687909 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT687960 HHIP hedgehog interacting protein 2 2
MIRT689212 ZNF574 zinc finger protein 574 2 2
MIRT689479 SCIMP SLP adaptor and CSK interacting membrane protein 2 2
MIRT690493 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT692282 XRN2 5'-3' exoribonuclease 2 2 2
MIRT693052 KIAA1324 KIAA1324 2 2
MIRT697435 ZFHX3 zinc finger homeobox 3 2 2
MIRT698467 TJP1 tight junction protein 1 2 2
MIRT699025 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699777 SEMA4D semaphorin 4D 2 2
MIRT701861 MRO maestro 2 2
MIRT702150 MAP3K1 mitogen-activated protein kinase kinase kinase 1 2 2
MIRT702233 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT703742 FAM126B family with sequence similarity 126 member B 2 2
MIRT704269 DGS2 DiGeorge syndrome/velocardiofacial syndrome complex 2 2 2
MIRT707743 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT709853 SNX12 sorting nexin 12 2 2
MIRT712739 LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 2 2
MIRT712946 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT713140 PKIA cAMP-dependent protein kinase inhibitor alpha 2 2
MIRT715527 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2 2
MIRT718273 ZNF749 zinc finger protein 749 2 2
MIRT720144 PPIP5K2 diphosphoinositol pentakisphosphate kinase 2 2 2
MIRT722711 ZNF460 zinc finger protein 460 2 2
MIRT723251 TMLHE trimethyllysine hydroxylase, epsilon 2 2
MIRT724238 DGKE diacylglycerol kinase epsilon 2 2
MIRT725074 WTIP WT1 interacting protein 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-548am-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM47)
hsa-miR-548am-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM17)
hsa-miR-548am-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-548am-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM11)
hsa-miR-548am-3p Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)

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