pre-miRNA Information
pre-miRNA hsa-mir-4477a   
Genomic Coordinates chr9: 41233755 - 41233835
Description Homo sapiens miR-4477a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4477a
Sequence 48| CUAUUAAGGACAUUUGUGAUUC |69
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1281813060 1 dbSNP
rs1352899679 1 dbSNP
rs1283566158 2 dbSNP
rs1236244724 4 dbSNP
rs75019967 4 dbSNP
rs1348124293 5 dbSNP
rs34026740 8 dbSNP
rs1288237115 9 dbSNP
rs71262206 10 dbSNP
rs1355759977 11 dbSNP
rs1300249508 16 dbSNP
rs1328879592 18 dbSNP
rs139133717 20 dbSNP
Putative Targets

Gene Information
Gene Symbol GLUD1   
Synonyms GDH, GDH1, GLUD
Description glutamate dehydrogenase 1
Transcript NM_005271   
Expression
Putative miRNA Targets on GLUD1
3'UTR of GLUD1
(miRNA target sites are highlighted)
>GLUD1|NM_005271|3'UTR
   1 ATGGATCATGGCTGACTTCCTCACTATCCTCTTCACATGTAACTTCTGCAGACCTATCACAAGTTTACATGTAACCACAG
  81 AAATCCCTTTCTCTCCTGACTCATTAATAATGGATACCATTCTCAACAAGTCAATCCAAGTCAGCCCGTTAAGGAGAAAG
 161 AAATTAAGGTTAGCGGATCATGTACAAGCTGAGTGTGAAAGTAGAAATCACCTACACCAGAGAGCCATTTTGGTATTTTG
 241 CCTTTAAATAAAAAGCCTCCTTTATCTGGCTGTGCAGCCTTGCTCTGTGGCTTTTCCCAACACAATCAGTGCTAGTGCTG
 321 GGGAGGAACAGTCAAGAGCAGTCAGTTGCTTGCTTATTTTTTCTGGATGAGTCTGGGACACACTGTAACTTTAACACATT
 401 TAAGAAGTAGGTGTGTGGCCTTTTCAGAAGGTGGCATGGTCCTCAAGTGAGTTCTTAGTATTTTATATCAGCAAAATAAT
 481 TCAATTTTGCAGGTTGCAAACAAATATAAAACCTGTTTCTGTTTATGAATATTATTCTTTTAGAATAGAATAAGTACATG
 561 CTGCTGTAATAAAATTGCCTTTAATCACTTAACAAGCCTAACCTTGACTCAAACAGTGAATGCCTATAGAAATAATAAAT
 641 GAAAAAAACTAGTATTTTTATATCATAAAACAATGTCATTTATAGCTTATCATTCATGTATTGTCCAGCAGACATTAAAA
 721 GCCCTGTGGATAATTAAGTTATCTTCATACCTGCAAAATGGTGGAGGCTATTTTCATTAAAACTGTCAGAATTTGCTTAC
 801 TATAATTATGATACAGTCCAAAGAATGCAGTCACTTTTTATCATGTTAACTAATTGTTCTCTTTTGAAGATCTATGGTTG
 881 ACTAATTAAACAATAATTCAAGTAGAGTGTCCCAGAAAAAAACCACTTGGGCTCCCTGTTTGGAGTCTGGCTGGCTCTGA
 961 GCATTGCCAATGGCCCCTACTCACCTGACTTTGTATCCTCTCCTTTTAGAGGCTTTGCATTCTGCACCCAGCTTCACTAA
1041 CAGTGGGCTGAAAACATCCTTGGGTTGAGTGTTTCATTTGGGAGTTATTTGGCCAGGGCCTTTTGAACAGTAGTGTCCCC
1121 ATGAAGTGCTAGATAATATATGTGTAAGAGTCAGCTTTTTTTTTTTTTTTAACTCTAACACCCTTCAGAAATTTCTAACT
1201 ACTTTGTAACTGCATGGCTTAACCTGGTGATAAAAGCAGTTATTAAAAGTCTACGTTTTCCAAAACTTACGTTTCTTTTC
1281 TGTGTTTTTACATGTGGTAGTTTCTCTTTTCATAAGTTATAATACTGCAATTGGATTTCTGAAATGTTTATAGCGACCAC
1361 CTGTATAACATTTCCTTCCACTTTATTGTGAGCTGCCCAGATTTTATTCTTGAATTGTTTTTTTTTTTTTTGTTCGGTGC
1441 TTTACACGTTCAGAGAAACTTCCCGAGTAACGAACTATAGAAATGATCCCTGAAAGCATAGTCTTTATTCTCGAATTATT
1521 TTGTATTTTATTAAATAATATGAACAGCTAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuuaGUGUUUA--CAGGAAUUAUc 5'
              | |||:|  ||:||||:|| 
Target 5' ggtcCTCAAGTGAGTTCTTAGTAt 3'
438 - 461 148.00 -10.30
2
miRNA  3' cuUAGUGU----UUACAGGAAUUAUc 5'
            ||||:|    |||||| || ||| 
Target 5' atATCATAAAACAATGTCATTTATAg 3'
660 - 685 118.00 -11.60
3
miRNA  3' cuuagUGU-UUACA--GGAAUUAUc 5'
               ||| | |||  |:|||| | 
Target 5' ctgggACACACTGTAACTTTAACAc 3'
373 - 397 111.00 -5.52
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
301387 64 ClinVar
301388 64 ClinVar
301386 205 ClinVar
301385 355 ClinVar
879214 469 ClinVar
301384 496 ClinVar
301383 852 ClinVar
879213 868 ClinVar
301382 908 ClinVar
301381 970 ClinVar
301380 972 ClinVar
878616 998 ClinVar
878615 1139 ClinVar
301379 1171 ClinVar
878614 1181 ClinVar
878613 1211 ClinVar
301378 1252 ClinVar
301377 1270 ClinVar
301376 1282 ClinVar
877600 1379 ClinVar
877599 1419 ClinVar
301375 1436 ClinVar
301374 1464 ClinVar
877598 1501 ClinVar
877597 1515 ClinVar
301373 1545 ClinVar
301372 1548 ClinVar
COSN26603911 8 COSMIC
COSN30113619 88 COSMIC
COSN508452 102 COSMIC
COSN22825779 109 COSMIC
COSN30164171 148 COSMIC
COSN31484050 197 COSMIC
COSN30171316 210 COSMIC
COSN31584289 356 COSMIC
COSN31546795 454 COSMIC
COSN35448 579 COSMIC
COSN31567999 680 COSMIC
COSN27804804 1047 COSMIC
COSN32061747 1156 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs747656281 4 dbSNP
rs1248191512 5 dbSNP
rs1202835639 8 dbSNP
rs780781977 11 dbSNP
rs71473298 19 dbSNP
rs1160181087 24 dbSNP
rs754979583 26 dbSNP
rs751493714 32 dbSNP
rs1345884160 35 dbSNP
rs779746225 37 dbSNP
rs758182664 45 dbSNP
rs1367623777 48 dbSNP
rs767571915 57 dbSNP
rs760101776 64 dbSNP
rs1370907788 71 dbSNP
rs1429059606 88 dbSNP
rs1168474993 91 dbSNP
rs930312036 93 dbSNP
rs1322154251 95 dbSNP
rs540517916 99 dbSNP
rs1388834664 102 dbSNP
rs774819008 104 dbSNP
rs572912081 108 dbSNP
rs766790101 113 dbSNP
rs1294793009 119 dbSNP
rs898859927 132 dbSNP
rs1038947048 142 dbSNP
rs557683852 147 dbSNP
rs1253666482 148 dbSNP
rs1343476542 151 dbSNP
rs1378158665 153 dbSNP
rs943283183 154 dbSNP
rs1279699648 155 dbSNP
rs763189776 159 dbSNP
rs1159923572 172 dbSNP
rs776352597 175 dbSNP
rs532011125 181 dbSNP
rs1186858414 189 dbSNP
rs1439777023 197 dbSNP
rs1247621895 202 dbSNP
rs1450215215 203 dbSNP
rs886047373 205 dbSNP
rs1195416389 215 dbSNP
rs539945918 225 dbSNP
rs1464419757 272 dbSNP
rs1196694941 277 dbSNP
rs768138483 278 dbSNP
rs987322607 283 dbSNP
rs1453075315 285 dbSNP
rs746648877 294 dbSNP
rs1204386912 296 dbSNP
rs1318176948 301 dbSNP
rs1487424579 316 dbSNP
rs1288510557 317 dbSNP
rs913975821 333 dbSNP
rs1329862441 336 dbSNP
rs1233113677 345 dbSNP
rs569595849 355 dbSNP
rs557411283 367 dbSNP
rs1207186338 369 dbSNP
rs1267821216 370 dbSNP
rs1273539623 372 dbSNP
rs1236026165 383 dbSNP
rs1803640 385 dbSNP
rs771673518 386 dbSNP
rs745846225 389 dbSNP
rs981011138 392 dbSNP
rs1318055782 411 dbSNP
rs970965937 417 dbSNP
rs183269542 425 dbSNP
rs371201485 427 dbSNP
rs1358159888 430 dbSNP
rs567450824 435 dbSNP
rs555738687 436 dbSNP
rs778942506 437 dbSNP
rs534035996 439 dbSNP
rs770787844 442 dbSNP
rs566474794 469 dbSNP
rs1387893093 482 dbSNP
rs551365539 484 dbSNP
rs1347937128 489 dbSNP
rs886047372 496 dbSNP
rs1227009336 501 dbSNP
rs1288057787 506 dbSNP
rs139349516 517 dbSNP
rs778067219 522 dbSNP
rs1263879065 531 dbSNP
rs1378193586 537 dbSNP
rs995033610 537 dbSNP
rs1269589108 540 dbSNP
rs568890008 550 dbSNP
rs898791518 551 dbSNP
rs1179755015 569 dbSNP
rs1039124892 573 dbSNP
rs1419328792 575 dbSNP
rs1160901555 587 dbSNP
rs1366321769 588 dbSNP
rs1457031986 604 dbSNP
rs1163656242 607 dbSNP
rs1217655679 616 dbSNP
rs376004427 624 dbSNP
rs752911376 627 dbSNP
rs1007460007 628 dbSNP
rs1485365107 634 dbSNP
rs1276558342 649 dbSNP
rs1307828260 664 dbSNP
rs890360188 665 dbSNP
rs1393466775 671 dbSNP
rs1051711883 672 dbSNP
rs189992553 675 dbSNP
rs1293958080 677 dbSNP
rs185986975 677 dbSNP
rs1361544753 678 dbSNP
rs1270130976 689 dbSNP
rs181450783 690 dbSNP
rs1053838276 697 dbSNP
rs781298299 698 dbSNP
rs936760918 723 dbSNP
rs1279653634 738 dbSNP
rs1386505200 742 dbSNP
rs1427232607 743 dbSNP
rs1400195310 751 dbSNP
rs926613764 758 dbSNP
rs1355618615 761 dbSNP
rs1463902969 768 dbSNP
rs1301400686 787 dbSNP
rs1378724826 789 dbSNP
rs1339555971 796 dbSNP
rs981197481 797 dbSNP
rs540528149 809 dbSNP
rs1363178676 813 dbSNP
rs1227724903 814 dbSNP
rs970723573 825 dbSNP
rs1307995538 828 dbSNP
rs755002858 834 dbSNP
rs752093902 835 dbSNP
rs1253960820 846 dbSNP
rs1402746167 848 dbSNP
rs150260124 852 dbSNP
rs1244563484 856 dbSNP
rs1447204958 857 dbSNP
rs1463825823 863 dbSNP
rs1425553025 864 dbSNP
rs1420863530 866 dbSNP
rs1430742705 868 dbSNP
rs1174438019 869 dbSNP
rs1194172851 874 dbSNP
rs951545998 878 dbSNP
rs1338991291 891 dbSNP
rs1027569093 896 dbSNP
rs1472582264 899 dbSNP
rs1434544301 906 dbSNP
rs1270790992 907 dbSNP
rs140942830 908 dbSNP
rs1189626242 923 dbSNP
rs1216220398 923 dbSNP
rs1443086524 924 dbSNP
rs191372907 926 dbSNP
rs575571072 932 dbSNP
rs1197335597 934 dbSNP
rs1320670444 946 dbSNP
rs1264678816 947 dbSNP
rs1463223174 951 dbSNP
rs963477277 953 dbSNP
rs1017379209 954 dbSNP
rs1050278 957 dbSNP
rs1259085813 964 dbSNP
rs760207211 970 dbSNP
rs12980 972 dbSNP
rs11548293 975 dbSNP
rs1051680759 992 dbSNP
rs766730554 998 dbSNP
rs1449514440 1000 dbSNP
rs1481008153 1001 dbSNP
rs1179018845 1005 dbSNP
rs1050306 1009 dbSNP
rs1410055164 1014 dbSNP
rs1009491403 1017 dbSNP
rs1050319 1022 dbSNP
rs1330550348 1026 dbSNP
rs892267000 1044 dbSNP
rs1054039415 1064 dbSNP
rs1434353677 1069 dbSNP
rs1444444751 1080 dbSNP
rs1050340 1087 dbSNP
rs936744316 1089 dbSNP
rs1223907245 1104 dbSNP
rs1171115092 1113 dbSNP
rs1326674150 1117 dbSNP
rs926679548 1118 dbSNP
rs1284492877 1134 dbSNP
rs1448267684 1136 dbSNP
rs1050359 1148 dbSNP
rs1218739508 1150 dbSNP
rs1404553619 1153 dbSNP
rs1411822027 1155 dbSNP
rs1045153274 1156 dbSNP
rs1202051232 1169 dbSNP
rs1410428371 1171 dbSNP
rs372802549 1171 dbSNP
rs80258277 1171 dbSNP
rs878902279 1171 dbSNP
rs779036919 1173 dbSNP
rs1403730964 1176 dbSNP
rs1162944650 1177 dbSNP
rs1364890358 1179 dbSNP
rs3190657 1180 dbSNP
rs917955632 1180 dbSNP
rs542298445 1181 dbSNP
rs573888506 1182 dbSNP
rs1441171139 1184 dbSNP
rs55900957 1197 dbSNP
rs1459472457 1202 dbSNP
rs555551007 1205 dbSNP
rs1352380322 1206 dbSNP
rs1226132895 1219 dbSNP
rs534100218 1223 dbSNP
rs920083573 1225 dbSNP
rs1225313375 1227 dbSNP
rs1250203307 1229 dbSNP
rs886047371 1252 dbSNP
rs974629632 1253 dbSNP
rs964273482 1254 dbSNP
rs1320309771 1255 dbSNP
rs1183096678 1260 dbSNP
rs1385888430 1261 dbSNP
rs1426602696 1268 dbSNP
rs1165440302 1270 dbSNP
rs886047370 1270 dbSNP
rs1017763971 1271 dbSNP
rs1409217287 1271 dbSNP
rs181931207 1282 dbSNP
rs1449968149 1285 dbSNP
rs1229711628 1289 dbSNP
rs1313771549 1293 dbSNP
rs1382953676 1298 dbSNP
rs954323591 1299 dbSNP
rs1030012066 1301 dbSNP
rs1339231294 1316 dbSNP
rs1196748158 1319 dbSNP
rs1275504226 1320 dbSNP
rs1440929523 1321 dbSNP
rs1203328886 1328 dbSNP
rs188823038 1330 dbSNP
rs1446581350 1331 dbSNP
rs892394285 1344 dbSNP
rs1032282901 1348 dbSNP
rs888784571 1354 dbSNP
rs1032691829 1355 dbSNP
rs184760134 1365 dbSNP
rs1045125321 1369 dbSNP
rs771903257 1375 dbSNP
rs181813972 1379 dbSNP
rs1041924756 1384 dbSNP
rs1454125878 1386 dbSNP
rs896455395 1389 dbSNP
rs949926928 1400 dbSNP
rs1435428692 1406 dbSNP
rs1347933052 1409 dbSNP
rs1325325204 1414 dbSNP
rs1228745864 1415 dbSNP
rs937936833 1417 dbSNP
rs1379981736 1418 dbSNP
rs1264060457 1419 dbSNP
rs895697576 1419 dbSNP
rs1441629623 1420 dbSNP
rs775610348 1422 dbSNP
rs920160827 1429 dbSNP
rs1055721287 1431 dbSNP
rs1261067427 1432 dbSNP
rs1470603603 1432 dbSNP
rs769832697 1432 dbSNP
rs867007728 1432 dbSNP
rs1487688851 1433 dbSNP
rs1429576849 1434 dbSNP
rs1286645194 1435 dbSNP
rs1470725020 1435 dbSNP
rs886047369 1436 dbSNP
rs1382276101 1440 dbSNP
rs1320919767 1447 dbSNP
rs1222840019 1448 dbSNP
rs886047368 1464 dbSNP
rs1284260457 1465 dbSNP
rs1325952360 1467 dbSNP
rs937958839 1471 dbSNP
rs773995364 1472 dbSNP
rs1206974788 1478 dbSNP
rs1263773104 1483 dbSNP
rs1355255199 1484 dbSNP
rs1309835654 1491 dbSNP
rs985846603 1498 dbSNP
rs984828210 1499 dbSNP
rs768450394 1501 dbSNP
rs1029977680 1506 dbSNP
rs1362848448 1510 dbSNP
rs1453928835 1512 dbSNP
rs987785881 1513 dbSNP
rs1365464296 1518 dbSNP
rs760448125 1523 dbSNP
rs1364263561 1527 dbSNP
rs956424946 1530 dbSNP
rs1032663061 1534 dbSNP
rs1404825843 1535 dbSNP
rs886047367 1545 dbSNP
rs886047366 1548 dbSNP
rs550416272 1550 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000277865.4 | 3UTR | AAUGGAUACCAUUCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-4477a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055843 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT061259 AMOTL1 angiomotin like 1 2 4
MIRT071895 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT076933 MLLT6 MLLT6, PHD finger containing 2 2
MIRT078652 ICT1 mitochondrial ribosomal protein L58 2 2
MIRT083633 PRNP prion protein 2 2
MIRT091629 RPL15 ribosomal protein L15 2 4
MIRT107076 PPP6C protein phosphatase 6 catalytic subunit 2 2
MIRT111191 TRIM33 tripartite motif containing 33 2 2
MIRT114515 ARF6 ADP ribosylation factor 6 2 2
MIRT175250 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT175430 ACSL4 acyl-CoA synthetase long chain family member 4 2 2
MIRT178687 FAM102B family with sequence similarity 102 member B 2 2
MIRT189771 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT229450 RPL10 ribosomal protein L10 2 2
MIRT244899 PHF6 PHD finger protein 6 2 2
MIRT249189 AKIRIN1 akirin 1 2 8
MIRT261134 TRIM8 tripartite motif containing 8 2 2
MIRT275561 ZIC5 Zic family member 5 2 4
MIRT275652 ABHD13 abhydrolase domain containing 13 2 2
MIRT288082 UTP18 UTP18, small subunit processome component 2 2
MIRT303605 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT307924 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT316787 FOXC1 forkhead box C1 2 2
MIRT326910 SCML2 Scm polycomb group protein like 2 2 2
MIRT327713 SPIN4 spindlin family member 4 2 2
MIRT331632 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT342506 TMOD3 tropomodulin 3 2 4
MIRT354470 LRRC58 leucine rich repeat containing 58 2 2
MIRT378711 TRIM24 tripartite motif containing 24 2 2
MIRT407462 YDJC YdjC chitooligosaccharide deacetylase homolog 2 2
MIRT408226 SMAD5 SMAD family member 5 2 4
MIRT441824 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT442783 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT443184 NHS NHS actin remodeling regulator 2 4
MIRT447615 CUL3 cullin 3 2 2
MIRT450156 DSEL dermatan sulfate epimerase-like 2 2
MIRT454801 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT463050 ZNF644 zinc finger protein 644 2 2
MIRT467400 SOCS3 suppressor of cytokine signaling 3 2 2
MIRT468174 SGMS1 sphingomyelin synthase 1 2 2
MIRT468949 RPS14 ribosomal protein S14 2 6
MIRT469835 R3HDM4 R3H domain containing 4 2 2
MIRT470724 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT470902 PLIN3 perilipin 3 2 2
MIRT472467 NAPG NSF attachment protein gamma 2 12
MIRT472602 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT492350 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493840 FOXN3 forkhead box N3 2 4
MIRT496318 DOCK9 dedicator of cytokinesis 9 2 2
MIRT500159 CLEC2D C-type lectin domain family 2 member D 2 8
MIRT500535 XPO4 exportin 4 2 4
MIRT503916 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504003 SAT1 spermidine/spermine N1-acetyltransferase 1 2 4
MIRT505647 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT506574 MIER3 MIER family member 3 2 4
MIRT506945 HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 2 4
MIRT508196 RPS19 ribosomal protein S19 2 6
MIRT511417 HSPA13 heat shock protein family A (Hsp70) member 13 2 4
MIRT512326 ACTB actin beta 2 4
MIRT515376 RPL7 ribosomal protein L7 2 2
MIRT520422 TUBG1 tubulin gamma 1 2 4
MIRT524844 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT526320 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526561 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT528027 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT529874 RBM43 RNA binding motif protein 43 2 2
MIRT530826 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT531334 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT532068 CCNB1 cyclin B1 2 4
MIRT532870 ZNF566 zinc finger protein 566 2 2
MIRT535580 NUP35 nucleoporin 35 2 2
MIRT537644 ERGIC2 ERGIC and golgi 2 2 4
MIRT537725 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT538894 BRI3BP BRI3 binding protein 2 2
MIRT538945 BMP2K BMP2 inducible kinase 2 2
MIRT540703 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT543210 TMEM117 transmembrane protein 117 2 3
MIRT543357 LYRM2 LYR motif containing 2 2 2
MIRT544905 CLSPN claspin 2 2
MIRT545532 ARF3 ADP ribosylation factor 3 2 2
MIRT546446 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT546882 PURB purine rich element binding protein B 2 4
MIRT547440 MED13 mediator complex subunit 13 2 2
MIRT548027 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548673 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT550435 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT551850 RPS3 ribosomal protein S3 2 2
MIRT556072 MRFAP1 Morf4 family associated protein 1 2 2
MIRT556554 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT557132 HOXA13 homeobox A13 2 2
MIRT557875 FEM1B fem-1 homolog B 2 4
MIRT558146 ELK4 ELK4, ETS transcription factor 2 2
MIRT558862 CD2AP CD2 associated protein 2 2
MIRT558884 CCNE1 cyclin E1 2 4
MIRT558907 CBX5 chromobox 5 2 2
MIRT559175 BRAP BRCA1 associated protein 2 2
MIRT560860 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561729 PPIF peptidylprolyl isomerase F 2 2
MIRT564024 CEBPB CCAAT/enhancer binding protein beta 2 2
MIRT564366 TRMT5 tRNA methyltransferase 5 2 2
MIRT564609 ZNF703 zinc finger protein 703 2 2
MIRT565494 AZF1 azoospermia factor 1 2 2
MIRT565577 SLC6A8 solute carrier family 6 member 8 2 2
MIRT566947 LEPROT leptin receptor overlapping transcript 2 2
MIRT567293 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT567308 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT568048 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT571807 PHF19 PHD finger protein 19 2 2
MIRT609234 RBM23 RNA binding motif protein 23 2 2
MIRT610328 SSX5 SSX family member 5 2 2
MIRT611428 UGT8 UDP glycosyltransferase 8 2 4
MIRT611709 SLFN13 schlafen family member 13 2 2
MIRT612069 CEP135 centrosomal protein 135 2 4
MIRT617676 JRKL JRK like 2 2
MIRT623684 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT635634 PRR15L proline rich 15 like 2 2
MIRT636422 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT637011 GPATCH11 G-patch domain containing 11 2 2
MIRT644150 C4orf3 chromosome 4 open reading frame 3 2 2
MIRT648562 MEMO1 mediator of cell motility 1 2 2
MIRT650752 WNT16 Wnt family member 16 2 2
MIRT651914 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT653556 SLC38A7 solute carrier family 38 member 7 2 2
MIRT692277 XRN2 5'-3' exoribonuclease 2 2 2
MIRT697650 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT703876 ERCC6 ERCC excision repair 6, chromatin remodeling factor 2 2
MIRT704615 CLIP1 CAP-Gly domain containing linker protein 1 2 2
MIRT708562 BBOX1 gamma-butyrobetaine hydroxylase 1 2 2
MIRT709614 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT712955 SGCD sarcoglycan delta 2 2
MIRT713502 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT720239 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT724255 GLUD1 glutamate dehydrogenase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4477a Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4477a Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4477a Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)

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