pre-miRNA Information
pre-miRNA hsa-mir-660   
Genomic Coordinates chrX: 50013241 - 50013337
Synonyms MIRN660, hsa-mir-660, MIR660
Description Homo sapiens miR-660 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-660-3p
Sequence 52| ACCUCCUGUGUGCAUGGAUUA |72
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1221699333 1 dbSNP
rs781893004 6 dbSNP
rs180785970 8 dbSNP
rs1272406504 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol HMGCLL1   
Synonyms bA418P12.1, er-cHL
Description 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1
Transcript NM_001042406   
Other Transcripts NM_019036   
Expression
Putative miRNA Targets on HMGCLL1
3'UTR of HMGCLL1
(miRNA target sites are highlighted)
>HMGCLL1|NM_001042406|3'UTR
   1 CTTGAATGGATTTATGACGTACCGTTGAGAAGATCAATTTCAGCTACAATACTCATCTGAAAATCATTAATGCCAACTTG
  81 CTCTGATATGTGAAGTAATGGACAAGAGTGGGAAAAAAGAGATCCTTTTCAAAAAGATTATAACTGGATAGATTAAGTCA
 161 ACAAAATGCAATATCAGTCATCAGGTAAATTGCAAGCTGAGGATAAATAATAAAACTTGTCATAATTTTGAACTTGGAAA
 241 AAAGTTTCTTTTGCTCTCATAGAAATAACTTTTTAATTTAGTAGATGGGAAAATTGACTTCGTATTTCCCCAAGTATCAA
 321 ATACTGTGTTAATACTTAATCAAGCAGGCTTAACACTGTGTACATATTGTCAGTAGTTTATGAGCTCCTGCATAGTATGC
 401 AGAGTGTGTGGCCTCAATATTATACATTATGCCTCTGGATCTCAACTACTCATTTGCCAAGTCAGTTATGTTATGGACCA
 481 AAAGCCAAATCTCCATCTGACCCTACATAATTTTAGCAATAGAACTTTTATATTTCAAGTATGGCTAACATCTGTTAACT
 561 ATTTCAGTGACTTTATCTGGTTCCAAGAGGCTGTGGCCAATGGCAAGATGCCATATCCTGGAAACATATTACGACCTCCC
 641 ATGTTTGTTACATGCATCCAGTTTACCACACTTTACCTGTCATCAGTTATAGTAAAAACCAGCATGGTGTTACTCAACTA
 721 TTGAGAAATTGTAAGCTATTTTTTTTTGTCCTGATGTCTAAATTGCAGTGATAAGAATAGGTTGATACATGTATCATAAT
 801 CTACCTTTATAATTTTCAGATCACTTTCAAATTGCCCAAGGAAATATTGTGATCCTAAGAATATTAAGATAATTTTAGGT
 881 TAATGAAATACCCATTTTCCTTTTATTCATGGTGCTTTGCTTACCCACATTATTTTTTGGTGTATTTTTTAGTGGTTATT
 961 TTAGAAGTTGAAGTGGCTGAAATTTTGTCTATTGTCTTAGAATTGATTGCCAGAAATTGCAAGATGTAATATATCAAAGT
1041 CAGGGATGAGGAGCAGGAGGACTATTCAAGATAAACTTCTGTAACCTATGCATATTTTATGGGGGCAGTATTATTACAAA
1121 TGGATCTGAAATGTCAGTTCTAGTATTTAGAGAGACTTCTCTAATAATACCGGGTGATATTATCTTTGAGTAAATTTGAA
1201 TATAAATTGAAACATAAAAATGAGTATTGTGAACTTTCTAGGAAATATTCATTAAAACCATTGAAATAAAAATAAATTCA
1281 AGAAAGTAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auuaggUACGUGU-GUCCUCCa 5'
                ||| : | ||||||| 
Target 5' tcagggATGAGGAGCAGGAGGa 3'
1040 - 1061 147.00 -15.00
2
miRNA  3' auUAGGUACGUGUGUCCUCCa 5'
            |||:: |: | || |||| 
Target 5' ttATCTG-GTTC-CAAGAGGc 3'
573 - 591 117.00 -6.30
3
miRNA  3' auuaGGUACGUGU------GUCCUCca 5'
              |::||:|||      ||| ||  
Target 5' aacaCTGTGTACATATTGTCAGTAGtt 3'
352 - 378 103.00 -8.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31506241 4 COSMIC
COSN31606878 4 COSMIC
COSN30158493 15 COSMIC
COSN30448633 16 COSMIC
COSN18730945 18 COSMIC
COSN28198205 19 COSMIC
COSN30504797 21 COSMIC
COSN8514525 24 COSMIC
COSN30110329 25 COSMIC
COSN2167391 30 COSMIC
COSN30468597 65 COSMIC
COSN30190681 73 COSMIC
COSN30190680 74 COSMIC
COSN28857944 77 COSMIC
COSN31589100 81 COSMIC
COSN30453284 85 COSMIC
COSN30465260 106 COSMIC
COSN20102976 111 COSMIC
COSN14234816 125 COSMIC
COSN30462614 128 COSMIC
COSN30111057 130 COSMIC
COSN31573615 145 COSMIC
COSN30188891 163 COSMIC
COSN31571648 206 COSMIC
COSN22312483 236 COSMIC
COSN30115381 248 COSMIC
COSN31544030 271 COSMIC
COSN18808572 333 COSMIC
COSN19506645 430 COSMIC
COSN31608016 510 COSMIC
COSN31962640 580 COSMIC
COSN19660389 665 COSMIC
COSN20102970 739 COSMIC
COSN18808571 751 COSMIC
COSN5632547 820 COSMIC
COSN5632546 834 COSMIC
COSN30263258 878 COSMIC
COSN9798178 893 COSMIC
COSN9798177 1223 COSMIC
COSN23327498 1230 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1217273223 1 dbSNP
rs1363901475 4 dbSNP
rs749110097 8 dbSNP
rs772843418 10 dbSNP
rs769412462 14 dbSNP
rs902036565 16 dbSNP
rs780959840 18 dbSNP
rs202021421 19 dbSNP
rs752938000 21 dbSNP
rs368717913 23 dbSNP
rs200563821 24 dbSNP
rs893736047 31 dbSNP
rs1448248956 32 dbSNP
rs558655031 35 dbSNP
rs754297606 42 dbSNP
rs201009734 49 dbSNP
rs777889714 51 dbSNP
rs1174666560 52 dbSNP
rs934728548 55 dbSNP
rs73444903 56 dbSNP
rs1313193278 61 dbSNP
rs1265858881 66 dbSNP
rs761301266 69 dbSNP
rs546064558 76 dbSNP
rs981951289 81 dbSNP
rs1313182480 92 dbSNP
rs937849092 99 dbSNP
rs201664577 112 dbSNP
rs141031166 113 dbSNP
rs188156695 113 dbSNP
rs1253613286 119 dbSNP
rs557194235 123 dbSNP
rs1046166265 128 dbSNP
rs535917702 129 dbSNP
rs12332977 131 dbSNP
rs918943394 136 dbSNP
rs1386469234 137 dbSNP
rs1262689245 142 dbSNP
rs1429222266 143 dbSNP
rs574748725 166 dbSNP
rs1375863545 169 dbSNP
rs1477653270 178 dbSNP
rs759066515 181 dbSNP
rs1377018703 184 dbSNP
rs940240950 189 dbSNP
rs774062171 190 dbSNP
rs1385160416 196 dbSNP
rs1015916787 203 dbSNP
rs1298556578 204 dbSNP
rs984252160 206 dbSNP
rs1329920617 211 dbSNP
rs954225243 215 dbSNP
rs1304676864 219 dbSNP
rs1175066221 232 dbSNP
rs554794971 235 dbSNP
rs866858079 236 dbSNP
rs976854591 239 dbSNP
rs965392657 243 dbSNP
rs1189065371 258 dbSNP
rs530574115 265 dbSNP
rs997678446 266 dbSNP
rs571131103 268 dbSNP
rs551195282 273 dbSNP
rs1201861750 281 dbSNP
rs770576997 283 dbSNP
rs146232811 294 dbSNP
rs559637475 296 dbSNP
rs1009589006 301 dbSNP
rs1007763053 302 dbSNP
rs866208447 309 dbSNP
rs1255827553 310 dbSNP
rs1208450221 316 dbSNP
rs534982161 319 dbSNP
rs1032229197 326 dbSNP
rs1440947477 334 dbSNP
rs1055129301 338 dbSNP
rs1001986273 341 dbSNP
rs773061674 342 dbSNP
rs998842454 345 dbSNP
rs115409675 357 dbSNP
rs1263863940 360 dbSNP
rs1013784057 363 dbSNP
rs897589430 366 dbSNP
rs183281832 367 dbSNP
rs199827671 372 dbSNP
rs1036416432 375 dbSNP
rs563922955 380 dbSNP
rs1401754188 393 dbSNP
rs1054985801 399 dbSNP
rs748135510 401 dbSNP
rs149721607 402 dbSNP
rs1367477285 408 dbSNP
rs578190170 411 dbSNP
rs1169169588 414 dbSNP
rs1048715152 417 dbSNP
rs1397404573 420 dbSNP
rs1428990529 425 dbSNP
rs1298012789 428 dbSNP
rs932785995 433 dbSNP
rs1393452029 445 dbSNP
rs921459949 447 dbSNP
rs1234054681 450 dbSNP
rs1275115686 452 dbSNP
rs1316045719 460 dbSNP
rs1203692649 466 dbSNP
rs867415034 475 dbSNP
rs1370889224 476 dbSNP
rs965807407 478 dbSNP
rs1179840000 479 dbSNP
rs976930568 483 dbSNP
rs1017710135 484 dbSNP
rs1007653279 496 dbSNP
rs965819349 504 dbSNP
rs1420803798 507 dbSNP
rs913992267 508 dbSNP
rs1170390899 509 dbSNP
rs1033225003 510 dbSNP
rs1463857744 519 dbSNP
rs761748037 528 dbSNP
rs1301458807 531 dbSNP
rs999520263 535 dbSNP
rs903174966 544 dbSNP
rs11751755 545 dbSNP
rs958098863 553 dbSNP
rs1185271340 554 dbSNP
rs1014327798 561 dbSNP
rs1273638785 575 dbSNP
rs1309113930 583 dbSNP
rs894589870 587 dbSNP
rs746018683 590 dbSNP
rs1485821506 596 dbSNP
rs1055904297 603 dbSNP
rs937805344 607 dbSNP
rs541293528 608 dbSNP
rs1477218578 610 dbSNP
rs1186524203 619 dbSNP
rs1032219382 627 dbSNP
rs909043456 632 dbSNP
rs572894274 633 dbSNP
rs1375191774 644 dbSNP
rs1435680720 650 dbSNP
rs1315033764 654 dbSNP
rs552835596 656 dbSNP
rs929250304 657 dbSNP
rs918927827 658 dbSNP
rs1364061613 659 dbSNP
rs969182770 671 dbSNP
rs1245606492 674 dbSNP
rs1348355000 675 dbSNP
rs1236150185 677 dbSNP
rs536204579 685 dbSNP
rs16886733 690 dbSNP
rs139596498 691 dbSNP
rs1243328249 692 dbSNP
rs1352134583 700 dbSNP
rs757486301 706 dbSNP
rs1192345357 717 dbSNP
rs1394953097 720 dbSNP
rs1454991035 721 dbSNP
rs1175842042 733 dbSNP
rs985845734 734 dbSNP
rs957500495 740 dbSNP
rs10706970 748 dbSNP
rs1319121478 748 dbSNP
rs1434346133 748 dbSNP
rs398001650 748 dbSNP
rs1325157000 754 dbSNP
rs1335602579 755 dbSNP
rs1409194321 756 dbSNP
rs1236304702 758 dbSNP
rs150600442 771 dbSNP
rs754198625 782 dbSNP
rs968055693 793 dbSNP
rs1223966130 802 dbSNP
rs1285870649 803 dbSNP
rs374921913 808 dbSNP
rs1319423009 809 dbSNP
rs1394239827 821 dbSNP
rs189548842 825 dbSNP
rs756638522 832 dbSNP
rs1252922137 839 dbSNP
rs1469299002 840 dbSNP
rs1457981259 841 dbSNP
rs1367329323 842 dbSNP
rs1014237838 846 dbSNP
rs887464836 847 dbSNP
rs571234678 848 dbSNP
rs1473349464 857 dbSNP
rs1048662619 868 dbSNP
rs932859676 873 dbSNP
rs41271318 881 dbSNP
rs1436647535 883 dbSNP
rs1270103299 884 dbSNP
rs1041570390 887 dbSNP
rs1355762823 891 dbSNP
rs1005648560 895 dbSNP
rs1164300378 901 dbSNP
rs887611380 902 dbSNP
rs1049406981 904 dbSNP
rs929221738 908 dbSNP
rs7760132 909 dbSNP
rs913967534 910 dbSNP
rs1280937228 916 dbSNP
rs1330066282 926 dbSNP
rs1376431144 930 dbSNP
rs988283339 933 dbSNP
rs566121712 934 dbSNP
rs1273253038 937 dbSNP
rs780190533 940 dbSNP
rs944336775 942 dbSNP
rs910225331 945 dbSNP
rs1182898989 951 dbSNP
rs925317302 952 dbSNP
rs980753783 953 dbSNP
rs1474342715 954 dbSNP
rs935787808 955 dbSNP
rs969255731 961 dbSNP
rs1333708443 964 dbSNP
rs1418629218 970 dbSNP
rs926122852 979 dbSNP
rs1166113606 1000 dbSNP
rs1387237488 1007 dbSNP
rs1024853310 1010 dbSNP
rs1330629594 1046 dbSNP
rs137940869 1056 dbSNP
rs185129038 1057 dbSNP
rs1458542454 1062 dbSNP
rs967582452 1064 dbSNP
rs1356848156 1068 dbSNP
rs1024957591 1085 dbSNP
rs1268940445 1091 dbSNP
rs1339300859 1105 dbSNP
rs1412249889 1113 dbSNP
rs961941681 1122 dbSNP
rs1157872547 1123 dbSNP
rs1015068784 1131 dbSNP
rs1005997166 1133 dbSNP
rs1275529042 1141 dbSNP
rs887538609 1154 dbSNP
rs1028638739 1158 dbSNP
rs147358686 1171 dbSNP
rs7739356 1172 dbSNP
rs1041333978 1178 dbSNP
rs1169474519 1198 dbSNP
rs181782875 1201 dbSNP
rs1433821831 1203 dbSNP
rs1313136442 1207 dbSNP
rs1376833818 1216 dbSNP
rs892659686 1224 dbSNP
rs1546299 1240 dbSNP
rs897659907 1241 dbSNP
rs1326409109 1247 dbSNP
rs936731851 1261 dbSNP
rs769601622 1272 dbSNP
rs1272396447 1275 dbSNP
rs1346197328 1277 dbSNP
rs1233954289 1280 dbSNP
rs541607110 1288 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000274901.4 | 3UTR | CAGGGAUGAGGAGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
348 hsa-miR-660-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059151 TXNIP thioredoxin interacting protein 2 2
MIRT294324 ZNF264 zinc finger protein 264 2 2
MIRT306043 SKIL SKI like proto-oncogene 2 4
MIRT392841 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT444084 C12orf73 chromosome 12 open reading frame 73 2 2
MIRT458774 CES2 carboxylesterase 2 2 2
MIRT460273 SLC26A2 solute carrier family 26 member 2 2 2
MIRT462675 HMOX1 heme oxygenase 1 2 4
MIRT473711 MAPK1 mitogen-activated protein kinase 1 2 6
MIRT478539 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT483234 FAM13C family with sequence similarity 13 member C 2 4
MIRT486255 BCORL1 BCL6 corepressor like 1 2 2
MIRT501951 MAT2A methionine adenosyltransferase 2A 2 10
MIRT513043 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT513249 FBXO17 F-box protein 17 2 2
MIRT526940 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT528176 C6orf47 chromosome 6 open reading frame 47 2 2
MIRT531525 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT532746 CMTM6 CKLF like MARVEL transmembrane domain containing 6 2 2
MIRT534241 SLC23A1 solute carrier family 23 member 1 2 2
MIRT538198 DBN1 drebrin 1 2 2
MIRT539305 AMOTL1 angiomotin like 1 2 2
MIRT539567 CNKSR3 CNKSR family member 3 2 4
MIRT540043 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540232 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540251 RGS17 regulator of G protein signaling 17 2 2
MIRT540878 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT543484 RXRA retinoid X receptor alpha 2 2
MIRT551435 F2 coagulation factor II, thrombin 2 2
MIRT553925 STK11IP serine/threonine kinase 11 interacting protein 2 2
MIRT556312 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT556943 ING1 inhibitor of growth family member 1 2 2
MIRT569883 EFEMP2 EGF containing fibulin like extracellular matrix protein 2 2 2
MIRT571849 NRBF2 nuclear receptor binding factor 2 2 2
MIRT572420 VWA5A von Willebrand factor A domain containing 5A 2 2
MIRT572495 BTN2A2 butyrophilin subfamily 2 member A2 2 2
MIRT572564 AFF1 AF4/FMR2 family member 1 2 2
MIRT572883 CHST15 carbohydrate sulfotransferase 15 2 2
MIRT574988 Slc38a5 solute carrier family 38, member 5 2 4
MIRT575264 Timp3 tissue inhibitor of metalloproteinase 3 2 2
MIRT608476 RRP36 ribosomal RNA processing 36 2 4
MIRT608529 TMOD3 tropomodulin 3 2 2
MIRT608578 RNF149 ring finger protein 149 2 2
MIRT608615 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT608679 STPG1 sperm tail PG-rich repeat containing 1 2 2
MIRT608727 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2 2
MIRT609575 CATSPER4 cation channel sperm associated 4 2 2
MIRT609710 TMEM132C transmembrane protein 132C 2 2
MIRT609858 DAZAP2 DAZ associated protein 2 2 2
MIRT610262 LRRC47 leucine rich repeat containing 47 2 2
MIRT610349 AGTRAP angiotensin II receptor associated protein 2 2
MIRT610729 PEA15 phosphoprotein enriched in astrocytes 15 2 4
MIRT610803 KLK2 kallikrein related peptidase 2 2 2
MIRT610968 MAFK MAF bZIP transcription factor K 2 2
MIRT611117 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 2 2
MIRT611600 JAKMIP3 Janus kinase and microtubule interacting protein 3 2 4
MIRT612211 TMEM109 transmembrane protein 109 2 2
MIRT612248 MICALL1 MICAL like 1 2 2
MIRT613252 CAV1 caveolin 1 2 4
MIRT613323 ARID3A AT-rich interaction domain 3A 2 4
MIRT613514 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT613605 TP53 tumor protein p53 2 2
MIRT613632 ARHGAP35 Rho GTPase activating protein 35 2 2
MIRT613809 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT614835 PRKCA protein kinase C alpha 2 2
MIRT614985 GIPC1 GIPC PDZ domain containing family member 1 2 2
MIRT615320 MLXIPL MLX interacting protein like 2 2
MIRT615504 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT615529 SPANXN5 SPANX family member N5 2 2
MIRT615610 SPANXN1 SPANX family member N1 2 2
MIRT615755 C6 complement C6 2 2
MIRT615952 SORD sorbitol dehydrogenase 2 2
MIRT616284 HMGB1 high mobility group box 1 2 2
MIRT616626 KCNJ11 potassium voltage-gated channel subfamily J member 11 2 4
MIRT616882 DGCR14 ess-2 splicing factor homolog 2 2
MIRT616994 COL19A1 collagen type XIX alpha 1 chain 2 2
MIRT617080 SPIB Spi-B transcription factor 2 2
MIRT617345 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617712 RUSC2 RUN and SH3 domain containing 2 2 2
MIRT618102 PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 2 2
MIRT618493 DENND5B DENN domain containing 5B 2 4
MIRT618756 SLC38A5 solute carrier family 38 member 5 2 5
MIRT619928 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT620028 NFAM1 NFAT activating protein with ITAM motif 1 2 2
MIRT620087 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 2
MIRT620209 VN1R1 vomeronasal 1 receptor 1 2 2
MIRT620557 C10orf10 chromosome 10 open reading frame 10 2 4
MIRT620770 CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) 2 2
MIRT620784 IL10RB interleukin 10 receptor subunit beta 2 2
MIRT620895 ANO7 anoctamin 7 2 2
MIRT621284 PIWIL1 piwi like RNA-mediated gene silencing 1 2 2
MIRT622594 PRRG4 proline rich and Gla domain 4 2 2
MIRT623273 MED28 mediator complex subunit 28 2 2
MIRT624247 VSIG2 V-set and immunoglobulin domain containing 2 2 2
MIRT624298 COMMD2 COMM domain containing 2 2 2
MIRT624526 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT624567 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT624692 AR androgen receptor 2 2
MIRT624767 AKR1D1 aldo-keto reductase family 1 member D1 2 2
MIRT624829 ACO1 aconitase 1 2 2
MIRT625159 ZCCHC8 zinc finger CCHC-type containing 8 2 4
MIRT625261 ZNF566 zinc finger protein 566 2 2
MIRT625388 ZNF716 zinc finger protein 716 2 2
MIRT625827 FBXO42 F-box protein 42 2 2
MIRT625837 NXPE2 neurexophilin and PC-esterase domain family member 2 2 2
MIRT626021 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626052 PDE4C phosphodiesterase 4C 2 2
MIRT626354 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT626778 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 2
MIRT627050 HOXA13 homeobox A13 2 2
MIRT627274 XIAP X-linked inhibitor of apoptosis 2 2
MIRT627310 WDR31 WD repeat domain 31 2 2
MIRT627916 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT630557 CCDC107 coiled-coil domain containing 107 2 2
MIRT630775 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT632083 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT633138 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT633711 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT634361 RNF157 ring finger protein 157 2 2
MIRT635739 IFNAR1 interferon alpha and beta receptor subunit 1 2 2
MIRT636963 APTX aprataxin 2 2
MIRT637373 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT637815 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT637911 FAM153B family with sequence similarity 153 member B 2 2
MIRT638474 PANK3 pantothenate kinase 3 2 2
MIRT638633 GSR glutathione-disulfide reductase 2 4
MIRT639493 TSPAN1 tetraspanin 1 2 2
MIRT639773 GPR45 G protein-coupled receptor 45 2 2
MIRT639781 RAX retina and anterior neural fold homeobox 2 2
MIRT639915 SLIT1 slit guidance ligand 1 2 2
MIRT640055 MCL1 MCL1, BCL2 family apoptosis regulator 2 4
MIRT640108 DUOX2 dual oxidase 2 2 2
MIRT640402 ZNF785 zinc finger protein 785 2 2
MIRT640555 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT640751 ZBTB26 zinc finger and BTB domain containing 26 2 2
MIRT640765 GLO1 glyoxalase I 2 2
MIRT640915 RAB13 RAB13, member RAS oncogene family 2 2
MIRT641521 CREBBP CREB binding protein 2 2
MIRT641533 SNW1 SNW domain containing 1 2 2
MIRT641692 SPCS1 signal peptidase complex subunit 1 2 2
MIRT641745 MACROD2 MACRO domain containing 2 2 2
MIRT641866 STOML1 stomatin like 1 2 2
MIRT641951 RNF115 ring finger protein 115 2 2
MIRT642205 SMAGP small cell adhesion glycoprotein 2 2
MIRT642420 CILP2 cartilage intermediate layer protein 2 2 2
MIRT643028 LETM2 leucine zipper and EF-hand containing transmembrane protein 2 2 2
MIRT643406 PAX1 paired box 1 2 2
MIRT643500 ZNF195 zinc finger protein 195 2 2
MIRT643754 LEFTY2 left-right determination factor 2 2 2
MIRT643898 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT644036 CENPM centromere protein M 2 2
MIRT644200 LAT2 linker for activation of T-cells family member 2 2 2
MIRT644228 ADD1 adducin 1 2 2
MIRT644690 GPR55 G protein-coupled receptor 55 2 2
MIRT645128 HES2 hes family bHLH transcription factor 2 2 2
MIRT645347 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT645897 ATP2B3 ATPase plasma membrane Ca2+ transporting 3 2 2
MIRT645905 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT646049 NPR1 natriuretic peptide receptor 1 2 2
MIRT646137 C1orf147 chromosome 1 open reading frame 147 2 2
MIRT646219 DUSP10 dual specificity phosphatase 10 2 2
MIRT646385 SLC22A6 solute carrier family 22 member 6 2 2
MIRT646739 FADS1 fatty acid desaturase 1 2 2
MIRT646877 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT647109 GNL3L G protein nucleolar 3 like 2 2
MIRT647523 PPIE peptidylprolyl isomerase E 2 2
MIRT647553 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT647755 NBPF3 NBPF member 3 2 2
MIRT648075 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT648225 TM4SF20 transmembrane 4 L six family member 20 2 2
MIRT648441 MYOZ3 myozenin 3 2 2
MIRT648823 ZNF689 zinc finger protein 689 2 2
MIRT649229 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT649237 FEM1A fem-1 homolog A 2 2
MIRT649249 TRIM65 tripartite motif containing 65 2 2
MIRT649459 WDR70 WD repeat domain 70 2 2
MIRT649637 RASA4 RAS p21 protein activator 4 2 2
MIRT650745 FKTN fukutin 2 2
MIRT651041 ZNF652 zinc finger protein 652 2 2
MIRT651754 VEGFA vascular endothelial growth factor A 2 2
MIRT651799 UST uronyl 2-sulfotransferase 2 2
MIRT652562 TLX1 T-cell leukemia homeobox 1 2 2
MIRT652776 TENM3 teneurin transmembrane protein 3 2 2
MIRT652939 SYNGR1 synaptogyrin 1 2 2
MIRT653006 STXBP5L syntaxin binding protein 5 like 2 2
MIRT653030 STX1B syntaxin 1B 2 2
MIRT653279 SNAP29 synaptosome associated protein 29 2 2
MIRT654057 S1PR1 sphingosine-1-phosphate receptor 1 2 2
MIRT654329 RBM33 RNA binding motif protein 33 2 2
MIRT654650 PTAFR platelet activating factor receptor 2 2
MIRT656577 LSM10 LSM10, U7 small nuclear RNA associated 2 2
MIRT656595 LSAMP limbic system-associated membrane protein 2 2
MIRT656646 LRIG1 leucine rich repeats and immunoglobulin like domains 1 2 2
MIRT656739 LMBR1L limb development membrane protein 1 like 2 2
MIRT656903 KIAA1958 KIAA1958 2 2
MIRT657392 HM13 histocompatibility minor 13 2 2
MIRT657528 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT657611 GRID1 glutamate ionotropic receptor delta type subunit 1 2 2
MIRT657668 GPR26 G protein-coupled receptor 26 2 2
MIRT657689 GPR155 G protein-coupled receptor 155 2 2
MIRT657818 GJD3 gap junction protein delta 3 2 2
MIRT658410 FAM208A family with sequence similarity 208 member A 2 2
MIRT658955 DNMT3A DNA methyltransferase 3 alpha 2 2
MIRT659425 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT659499 CISD3 CDGSH iron sulfur domain 3 2 2
MIRT659994 C2CD2L C2CD2 like 2 2
MIRT660215 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660493 ARRDC3 arrestin domain containing 3 2 2
MIRT660761 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT660827 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT661576 EPHX2 epoxide hydrolase 2 2 2
MIRT661711 MTO1 mitochondrial tRNA translation optimization 1 2 4
MIRT661826 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT662123 APOL6 apolipoprotein L6 2 2
MIRT662254 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT662314 ADM2 adrenomedullin 2 2 2
MIRT662341 MYLK3 myosin light chain kinase 3 2 2
MIRT662453 SEMA5A semaphorin 5A 2 2
MIRT662746 LRRC3C leucine rich repeat containing 3C 2 2
MIRT662901 GJB1 gap junction protein beta 1 2 2
MIRT663018 KIAA1586 KIAA1586 2 2
MIRT663102 THEM4 thioesterase superfamily member 4 2 2
MIRT663574 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT664125 C4orf32 family with sequence similarity 241 member A 2 2
MIRT664560 SORBS2 sorbin and SH3 domain containing 2 2 2
MIRT665589 TUBD1 tubulin delta 1 2 2
MIRT666464 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT666527 RNF170 ring finger protein 170 2 2
MIRT666874 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 2 2
MIRT667055 PARVA parvin alpha 2 2
MIRT667282 NAV1 neuron navigator 1 2 2
MIRT667928 IGLON5 IgLON family member 5 2 2
MIRT667957 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 2 2
MIRT668336 FKBP5 FK506 binding protein 5 2 2
MIRT668718 DIP2C disco interacting protein 2 homolog C 2 2
MIRT669310 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669688 ABLIM1 actin binding LIM protein 1 2 2
MIRT671524 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT672112 TLCD2 TLC domain containing 2 2 4
MIRT672186 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT672702 ZNF677 zinc finger protein 677 2 2
MIRT673473 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT673617 HPSE heparanase 2 2
MIRT673763 ZNF333 zinc finger protein 333 2 2
MIRT674817 FAM229B family with sequence similarity 229 member B 2 2
MIRT675304 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675404 SVOP SV2 related protein 2 2
MIRT676163 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676320 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT676347 PCCB propionyl-CoA carboxylase beta subunit 2 2
MIRT676526 RNF216 ring finger protein 216 2 2
MIRT676571 VSIG1 V-set and immunoglobulin domain containing 1 2 2
MIRT676588 RDH13 retinol dehydrogenase 13 2 2
MIRT676648 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676723 METTL14 methyltransferase like 14 2 2
MIRT676805 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT676813 SHROOM4 shroom family member 4 2 2
MIRT677204 MURC caveolae associated protein 4 2 2
MIRT677284 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677359 POC1A POC1 centriolar protein A 2 2
MIRT677516 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677530 OCIAD2 OCIA domain containing 2 2 2
MIRT677627 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT677669 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT678056 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT678132 METTL21A methyltransferase like 21A 2 2
MIRT678154 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678463 GLYAT glycine-N-acyltransferase 2 2
MIRT678614 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT678716 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT679161 ZDHHC15 zinc finger DHHC-type containing 15 2 2
MIRT679307 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679430 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT679499 ZNF106 zinc finger protein 106 2 2
MIRT679963 VTA1 vesicle trafficking 1 2 2
MIRT679983 E2F2 E2F transcription factor 2 2 2
MIRT680153 TOP3A DNA topoisomerase III alpha 2 2
MIRT680304 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT680330 LRRC58 leucine rich repeat containing 58 2 2
MIRT680401 OXA1L OXA1L, mitochondrial inner membrane protein 2 2
MIRT683911 PSMB9 proteasome subunit beta 9 2 2
MIRT684183 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684238 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT684284 CDK9 cyclin dependent kinase 9 2 2
MIRT685411 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686260 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT688250 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688327 FAM151B family with sequence similarity 151 member B 2 2
MIRT688747 CNDP1 carnosine dipeptidase 1 2 2
MIRT689040 ANGPTL3 angiopoietin like 3 2 2
MIRT692525 PARD3 par-3 family cell polarity regulator 2 2
MIRT692984 LGSN lengsin, lens protein with glutamine synthetase domain 2 2
MIRT699866 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT699877 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT700840 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT701538 NCKAP1 NCK associated protein 1 2 2
MIRT703683 FAM189B family with sequence similarity 189 member B 2 2
MIRT708555 SPA17 sperm autoantigenic protein 17 2 2
MIRT708579 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT708721 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT708984 CABP4 calcium binding protein 4 2 2
MIRT709195 SAPCD2 suppressor APC domain containing 2 2 2
MIRT709679 PCDH17 protocadherin 17 2 2
MIRT709962 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT710173 MTRF1L mitochondrial translational release factor 1 like 2 2
MIRT710329 STK40 serine/threonine kinase 40 2 2
MIRT710532 TMEM201 transmembrane protein 201 2 2
MIRT710628 ASB7 ankyrin repeat and SOCS box containing 7 2 2
MIRT711037 RNF187 ring finger protein 187 2 2
MIRT711227 RETSAT retinol saturase 2 2
MIRT711418 RAB3C RAB3C, member RAS oncogene family 2 2
MIRT711469 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT711636 PEBP1 phosphatidylethanolamine binding protein 1 2 2
MIRT711658 RAB21 RAB21, member RAS oncogene family 2 2
MIRT711704 GMPR guanosine monophosphate reductase 2 2
MIRT711924 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT712061 ZBTB34 zinc finger and BTB domain containing 34 2 2
MIRT712094 TMEM218 transmembrane protein 218 2 2
MIRT712541 CYB561D1 cytochrome b561 family member D1 2 2
MIRT714480 TBL2 transducin beta like 2 2 2
MIRT716323 SIGLEC10 sialic acid binding Ig like lectin 10 2 2
MIRT716750 C19orf24 chromosome 19 open reading frame 24 2 2
MIRT717014 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT717162 SHB SH2 domain containing adaptor protein B 2 2
MIRT717369 EDN2 endothelin 2 2 2
MIRT717481 PDE4DIP phosphodiesterase 4D interacting protein 2 2
MIRT718080 CLIC5 chloride intracellular channel 5 2 2
MIRT718545 PIGQ phosphatidylinositol glycan anchor biosynthesis class Q 2 2
MIRT718835 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT718864 LRSAM1 leucine rich repeat and sterile alpha motif containing 1 2 2
MIRT719149 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT719687 ALDH1L2 aldehyde dehydrogenase 1 family member L2 2 2
MIRT719780 ZNF236 zinc finger protein 236 2 2
MIRT719859 KLF2 Kruppel like factor 2 2 2
MIRT720496 TMEM178B transmembrane protein 178B 2 2
MIRT720804 NUDT5 nudix hydrolase 5 2 2
MIRT720944 PPP1R3E protein phosphatase 1 regulatory subunit 3E 2 2
MIRT721344 LIF LIF, interleukin 6 family cytokine 2 2
MIRT721805 GRM1 glutamate metabotropic receptor 1 2 2
MIRT721924 LINGO2 leucine rich repeat and Ig domain containing 2 2 2
MIRT722429 HRNR hornerin 2 2
MIRT723971 GPR146 G protein-coupled receptor 146 2 2
MIRT724225 ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 2 2
MIRT724272 HMGCLL1 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 2 2
MIRT724659 PXDN peroxidasin 2 2
MIRT725282 OSTM1 osteopetrosis associated transmembrane protein 1 2 2
MIRT725434 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT725604 CAPN6 calpain 6 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-660 4-hydroxynonenal NULL 5283344 Microarray human leukemic HL-60 cell 19022373 2009 up-regulated
miR-660 Vorinostat (SAHA) approved 5311 Microarray A549 human non-small cell lung cancer cells 19513533 2009 up-regulated
miR-660 Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-660 Vitamin D3 approved 5280795 Quantitative real-time PCR Plasma 22594500 2012 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-660 Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-mir-660 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-660 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-660 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-mir-660 Cisplatin 5460033 NSC119875 approved resistant cell line (KYSE)
hsa-mir-660 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-mir-660 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-660 Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)
hsa-miR-660-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-660-3p Sorafenib 216239 NSC747971 approved sensitive Low Hepatocellular Carcinoma cell line (HepG2)
hsa-miR-660-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-660-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-660-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-660-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-660-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

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