pre-miRNA Information
pre-miRNA hsa-mir-1343   
Genomic Coordinates chr11: 34941837 - 34941920
Description Homo sapiens miR-1343 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1343-3p
Sequence 52| CUCCUGGGGCCCGCACUCUCGC |73
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30640426 13 COSMIC
COSN32131883 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1030024806 10 dbSNP
rs568333985 11 dbSNP
rs1335261302 13 dbSNP
rs1228966720 17 dbSNP
rs950497159 20 dbSNP
rs748356067 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RNPEPL1   
Synonyms -
Description arginyl aminopeptidase like 1
Transcript NM_018226   
Expression
Putative miRNA Targets on RNPEPL1
3'UTR of RNPEPL1
(miRNA target sites are highlighted)
>RNPEPL1|NM_018226|3'UTR
   1 CCCTGTTGGCGGGCTGACCCTCGACCTCCCAGACACCACAATTGTGCCTTCTGTGGGCCAGGCCTGCCATGACTGCGTCT
  81 CGGCTCTGGCCATGAGCTCTGCCCAGGCCCACAAGCCCCTCCCCTGGGCTCTCCCAGGCAGGGAGAATGGGGAGAGGGAC
 161 CTCCTTGTGTCTGGCAGAGACCTGTGGACCTGGCCTCCCCACTCCCAGCTCTCTTGCACTGCAGGCCCTGGGGCCAGCCC
 241 GCACACACCATGCCTCCTGTCTCAACACTGACAGCTGTGCCTAGCCCCGGATGCCAGCACCTGCCAGGTGCCGCCCCGGG
 321 GCAAGGGCCCCAGCAGCCCTATGGTGACCGCCACACTGTGCCTTAATGTCTGCCGGGGGCCCAGGCTGTGCTGTCCCTGC
 401 AGCACGCCTCCTTGCAGGGATCTGAGCCACCCTCCCCGCACAGCCCTGCACCCCGCCCCTGGGGTTGGCAGCCTCAGTTG
 481 GCCCCTGGCAGAGGAACAAGGACACAGACATTCCCTCAGTGTGGGGGGCAGGGGACACAGGGAGAGGATGGTTGTCCCTG
 561 GGGAGGGCCCTCTGGCCCCAGGCAACCTTAGCCCCTCAGAACAGGGAGTCCCAGGACCCAGGGAGAGTGTGGGGACAGGA
 641 CAGCCTGTCTCTTGTAGCTTCCTGGGGTGGGAGGCACAGGGGCAAAGCAATACCCCAGGGAAAGTGGGAGGTGGTGCTGG
 721 TGCTCTCTCCAGGCCCACCATGCTGGGAGAGGCGGCCAGAGCCTGGGGCCTCCAGCCTGGGACTGCTGTGATGGGGTATC
 801 ACGGTGATGGTCCCATTAAACTTCCACTCTGCAAACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgcUC-UCACGCCCGGGGUCCUc 5'
             || |  | | |:||||||| 
Target 5' ctcAGAACAGGGAGTCCCAGGAc 3'
595 - 617 151.00 -18.20
2
miRNA  3' cgCUCUCAC----GCCCGGGGUCCuc 5'
            |:||| |    | |||||||||  
Target 5' tgGGGAGGGCCCTCTGGCCCCAGGca 3'
559 - 584 146.00 -26.00
3
miRNA  3' cgcucucACG--CCCGGGGUCCuc 5'
                 |||  ||| ||||||  
Target 5' taatgtcTGCCGGGGGCCCAGGct 3'
364 - 387 137.00 -19.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19770743 6 COSMIC
COSN28862569 12 COSMIC
COSN32053201 17 COSMIC
COSN26992512 24 COSMIC
COSN30567564 82 COSMIC
COSN15666652 100 COSMIC
COSN31956161 146 COSMIC
COSN32058194 314 COSMIC
COSN6681951 462 COSMIC
COSN20098013 540 COSMIC
COSN16945778 835 COSMIC
COSN1236458 958 COSMIC
COSN6176425 2683 COSMIC
COSN20156028 2992 COSMIC
COSN9997585 3285 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs781756989 3 dbSNP
rs1460130295 4 dbSNP
rs3749161 6 dbSNP
rs753388723 8 dbSNP
rs1249958050 11 dbSNP
rs770293862 12 dbSNP
rs936656347 13 dbSNP
rs780373169 14 dbSNP
rs1432094278 15 dbSNP
rs975382797 21 dbSNP
rs921955666 23 dbSNP
rs1055023751 24 dbSNP
rs757092739 34 dbSNP
rs1391602046 35 dbSNP
rs749552136 39 dbSNP
rs769040143 42 dbSNP
rs1211115772 45 dbSNP
rs1281453562 49 dbSNP
rs774269064 52 dbSNP
rs187377234 77 dbSNP
rs548803492 78 dbSNP
rs1240096297 82 dbSNP
rs896977487 83 dbSNP
rs577400521 86 dbSNP
rs34767217 97 dbSNP
rs1202498090 105 dbSNP
rs1000811184 117 dbSNP
rs1232739787 121 dbSNP
rs1402853530 121 dbSNP
rs894824954 130 dbSNP
rs1280730572 131 dbSNP
rs1239325260 136 dbSNP
rs1334764370 137 dbSNP
rs1013221049 140 dbSNP
rs1027136414 142 dbSNP
rs1321932298 149 dbSNP
rs1375804538 164 dbSNP
rs1024646095 165 dbSNP
rs950483115 174 dbSNP
rs1005026111 176 dbSNP
rs1016457008 180 dbSNP
rs1469842874 195 dbSNP
rs535110860 196 dbSNP
rs888142200 197 dbSNP
rs1006986822 198 dbSNP
rs1304446950 199 dbSNP
rs1017927228 210 dbSNP
rs1486244240 215 dbSNP
rs1257244894 216 dbSNP
rs964966559 220 dbSNP
rs1348153594 221 dbSNP
rs1209374899 224 dbSNP
rs553240462 228 dbSNP
rs922152359 229 dbSNP
rs1285786882 231 dbSNP
rs976293477 233 dbSNP
rs1030545633 241 dbSNP
rs954711872 242 dbSNP
rs1277450483 244 dbSNP
rs1234743836 245 dbSNP
rs967275245 255 dbSNP
rs987471997 257 dbSNP
rs1292384293 268 dbSNP
rs1412860475 269 dbSNP
rs1346850843 271 dbSNP
rs913227102 278 dbSNP
rs978230883 279 dbSNP
rs1400240777 287 dbSNP
rs946178384 288 dbSNP
rs1352367624 289 dbSNP
rs1475627102 290 dbSNP
rs1417599917 294 dbSNP
rs925342942 295 dbSNP
rs768270630 298 dbSNP
rs990787317 299 dbSNP
rs574598857 300 dbSNP
rs1452120637 301 dbSNP
rs373180432 304 dbSNP
rs936472103 309 dbSNP
rs1055051159 310 dbSNP
rs1215188968 313 dbSNP
rs949341020 314 dbSNP
rs1272349184 317 dbSNP
rs191831366 318 dbSNP
rs897014803 319 dbSNP
rs1324778359 322 dbSNP
rs1482136961 328 dbSNP
rs11688314 334 dbSNP
rs1462194692 335 dbSNP
rs1181517831 341 dbSNP
rs1163027283 342 dbSNP
rs1412039142 346 dbSNP
rs540647358 350 dbSNP
rs1186505078 351 dbSNP
rs771896340 359 dbSNP
rs886086619 368 dbSNP
rs1004654946 375 dbSNP
rs1016399486 376 dbSNP
rs1468658706 380 dbSNP
rs1168897127 383 dbSNP
rs963587409 384 dbSNP
rs184042003 393 dbSNP
rs746884331 406 dbSNP
rs954991108 407 dbSNP
rs1017956554 409 dbSNP
rs1305748483 417 dbSNP
rs900838198 418 dbSNP
rs1441802021 419 dbSNP
rs1413455725 436 dbSNP
rs3749162 438 dbSNP
rs543384541 439 dbSNP
rs1369217367 442 dbSNP
rs768424369 446 dbSNP
rs978677279 448 dbSNP
rs1032476044 449 dbSNP
rs139367978 455 dbSNP
rs1337197378 456 dbSNP
rs978880790 458 dbSNP
rs1189114439 460 dbSNP
rs8662 462 dbSNP
rs1233277777 475 dbSNP
rs916614106 487 dbSNP
rs937440579 488 dbSNP
rs990686737 491 dbSNP
rs970689172 499 dbSNP
rs949305398 504 dbSNP
rs1347318180 513 dbSNP
rs1046325877 517 dbSNP
rs1247857429 519 dbSNP
rs1272451883 520 dbSNP
rs1225687142 522 dbSNP
rs778021050 522 dbSNP
rs1204561628 523 dbSNP
rs982017224 524 dbSNP
rs1037457241 525 dbSNP
rs1434584717 528 dbSNP
rs1173298112 529 dbSNP
rs547572222 529 dbSNP
rs1420526581 535 dbSNP
rs3833579 539 dbSNP
rs751646773 539 dbSNP
rs1176238923 545 dbSNP
rs918516496 550 dbSNP
rs1211522113 558 dbSNP
rs559450515 563 dbSNP
rs1395484583 564 dbSNP
rs1237119361 570 dbSNP
rs1127191 573 dbSNP
rs929881765 576 dbSNP
rs1217977733 582 dbSNP
rs995872750 584 dbSNP
rs577420787 594 dbSNP
rs1029144470 597 dbSNP
rs1414752855 602 dbSNP
rs529829923 606 dbSNP
rs1048711818 609 dbSNP
rs1291122994 610 dbSNP
rs890604977 612 dbSNP
rs1345268006 615 dbSNP
rs1157997850 617 dbSNP
rs1009121034 624 dbSNP
rs909677088 625 dbSNP
rs942466473 628 dbSNP
rs1039466560 629 dbSNP
rs1020464664 630 dbSNP
rs1188164513 633 dbSNP
rs900870690 635 dbSNP
rs1260202648 645 dbSNP
rs1207066219 646 dbSNP
rs1337177785 648 dbSNP
rs1127196 652 dbSNP
rs967412085 653 dbSNP
rs979212154 660 dbSNP
rs35709509 664 dbSNP
rs1298462986 669 dbSNP
rs1388883892 673 dbSNP
rs959072378 674 dbSNP
rs1362057377 675 dbSNP
rs991553355 677 dbSNP
rs1455345007 681 dbSNP
rs1396157807 682 dbSNP
rs997834250 683 dbSNP
rs149607841 688 dbSNP
rs1041361788 691 dbSNP
rs1366490456 694 dbSNP
rs1429631335 696 dbSNP
rs569697235 697 dbSNP
rs537735662 701 dbSNP
rs999741766 705 dbSNP
rs1261168738 715 dbSNP
rs1186701982 717 dbSNP
rs1412254915 718 dbSNP
rs1253911384 720 dbSNP
rs1213296566 721 dbSNP
rs549577889 724 dbSNP
rs1383040090 726 dbSNP
rs1454394396 728 dbSNP
rs1228796319 729 dbSNP
rs144408516 730 dbSNP
rs1127202 738 dbSNP
rs1295073025 739 dbSNP
rs1012314629 741 dbSNP
rs1307384107 742 dbSNP
rs3211175 750 dbSNP
rs1364374460 752 dbSNP
rs982035469 754 dbSNP
rs907746801 755 dbSNP
rs1326244143 758 dbSNP
rs1385861044 765 dbSNP
rs1388322225 766 dbSNP
rs1252994056 767 dbSNP
rs773330303 771 dbSNP
rs970761298 789 dbSNP
rs1372487670 796 dbSNP
rs1462456277 796 dbSNP
rs1127207 797 dbSNP
rs1127208 802 dbSNP
rs918561882 803 dbSNP
rs1037805125 804 dbSNP
rs951379245 805 dbSNP
rs534861209 812 dbSNP
rs909743211 813 dbSNP
rs1234981307 815 dbSNP
rs898816119 816 dbSNP
rs766692031 817 dbSNP
rs931753258 826 dbSNP
rs766389154 827 dbSNP
rs1349489817 830 dbSNP
rs1303422655 835 dbSNP
rs1194602953 838 dbSNP
rs1008985135 843 dbSNP
rs1375253373 845 dbSNP
rs1316057693 846 dbSNP
rs1369712609 848 dbSNP
rs374438850 849 dbSNP
rs903468296 850 dbSNP
rs1172028417 854 dbSNP
rs1476783826 856 dbSNP
rs568184897 859 dbSNP
rs1033451783 860 dbSNP
rs958671705 861 dbSNP
rs188580722 862 dbSNP
rs1418923694 863 dbSNP
rs1470711915 864 dbSNP
rs1213656165 865 dbSNP
rs1318306863 868 dbSNP
rs1280451005 870 dbSNP
rs1387710910 871 dbSNP
rs922366259 876 dbSNP
rs1382570890 877 dbSNP
rs1281000423 878 dbSNP
rs1239300796 880 dbSNP
rs1349667075 889 dbSNP
rs1013021798 892 dbSNP
rs1355956549 894 dbSNP
rs370323214 894 dbSNP
rs1329256950 895 dbSNP
rs1041777454 899 dbSNP
rs1231190281 900 dbSNP
rs1412877704 903 dbSNP
rs1387223686 906 dbSNP
rs902844463 907 dbSNP
rs1324543707 910 dbSNP
rs556919321 911 dbSNP
rs755382928 912 dbSNP
rs962296901 917 dbSNP
rs894001050 919 dbSNP
rs1440255357 924 dbSNP
rs776776450 926 dbSNP
rs1012386718 935 dbSNP
rs575275430 936 dbSNP
rs1206065255 938 dbSNP
rs973323798 941 dbSNP
rs543697162 943 dbSNP
rs1266032411 946 dbSNP
rs1234958904 947 dbSNP
rs1355820793 953 dbSNP
rs1023729079 957 dbSNP
rs970795366 962 dbSNP
rs377337874 964 dbSNP
rs1445709897 966 dbSNP
rs562783643 971 dbSNP
rs951405711 972 dbSNP
rs767844142 973 dbSNP
rs1016845921 974 dbSNP
rs759525076 975 dbSNP
rs1429305714 977 dbSNP
rs963934903 978 dbSNP
rs1413516477 979 dbSNP
rs778883957 985 dbSNP
rs944453021 986 dbSNP
rs975259167 988 dbSNP
rs1042308308 989 dbSNP
rs922389049 990 dbSNP
rs866997631 1003 dbSNP
rs1000873743 1005 dbSNP
rs867567766 1016 dbSNP
rs140175355 1017 dbSNP
rs534234350 1020 dbSNP
rs753277033 1020 dbSNP
rs1410734076 1024 dbSNP
rs765375878 1030 dbSNP
rs1012884639 1032 dbSNP
rs1388531628 1035 dbSNP
rs143635846 1044 dbSNP
rs1285440692 1052 dbSNP
rs752798271 1071 dbSNP
rs1054505193 1082 dbSNP
rs1216076849 1085 dbSNP
rs1024310716 1090 dbSNP
rs1346296560 1098 dbSNP
rs894073329 1102 dbSNP
rs76101232 1105 dbSNP
rs1045214167 1106 dbSNP
rs1286743158 1107 dbSNP
rs1195121205 1111 dbSNP
rs529793238 1128 dbSNP
rs1316506042 1136 dbSNP
rs1240246752 1137 dbSNP
rs1015193263 1152 dbSNP
rs1219047146 1159 dbSNP
rs192782711 1170 dbSNP
rs1487797571 1174 dbSNP
rs758680392 1179 dbSNP
rs541981084 1185 dbSNP
rs1004070168 1192 dbSNP
rs973740490 1193 dbSNP
rs1490709790 1195 dbSNP
rs370789309 1198 dbSNP
rs945486742 1198 dbSNP
rs953051335 1202 dbSNP
rs985798647 1203 dbSNP
rs1419262262 1206 dbSNP
rs1368168513 1210 dbSNP
rs1025715805 1216 dbSNP
rs944484142 1219 dbSNP
rs1366442927 1231 dbSNP
rs1457207998 1232 dbSNP
rs376155918 1233 dbSNP
rs1252201286 1237 dbSNP
rs1204360376 1243 dbSNP
rs887133963 1249 dbSNP
rs1005570451 1250 dbSNP
rs1016917763 1251 dbSNP
rs963957301 1252 dbSNP
rs1406868171 1254 dbSNP
rs936151334 1255 dbSNP
rs1311644551 1256 dbSNP
rs975323346 1267 dbSNP
rs563266482 1271 dbSNP
rs530472977 1272 dbSNP
rs1374520411 1278 dbSNP
rs1372874442 1284 dbSNP
rs1392117825 1285 dbSNP
rs184312613 1289 dbSNP
rs1309403026 1290 dbSNP
rs948940324 1294 dbSNP
rs6744734 1301 dbSNP
rs190817744 1306 dbSNP
rs778541780 1307 dbSNP
rs1402015246 1312 dbSNP
rs1412484917 1317 dbSNP
rs1202454499 1318 dbSNP
rs897660240 1328 dbSNP
rs935720849 1329 dbSNP
rs576227538 1330 dbSNP
rs1482998334 1332 dbSNP
rs1027441825 1343 dbSNP
rs1218219025 1350 dbSNP
rs915538143 1357 dbSNP
rs1253640043 1376 dbSNP
rs953326158 1377 dbSNP
rs1226995236 1378 dbSNP
rs948346622 1379 dbSNP
rs1337403589 1385 dbSNP
rs1482003528 1385 dbSNP
rs1314138887 1386 dbSNP
rs1443828689 1389 dbSNP
rs117498581 1394 dbSNP
rs568348885 1400 dbSNP
rs985993254 1409 dbSNP
rs1432491977 1411 dbSNP
rs1018583593 1418 dbSNP
rs1157920223 1432 dbSNP
rs899880581 1433 dbSNP
rs538591848 1435 dbSNP
rs906741407 1443 dbSNP
rs557078870 1445 dbSNP
rs1165408743 1453 dbSNP
rs1423102956 1456 dbSNP
rs1387044973 1457 dbSNP
rs758116037 1458 dbSNP
rs143177046 1459 dbSNP
rs376028804 1459 dbSNP
rs779810924 1459 dbSNP
rs935748743 1459 dbSNP
rs990369122 1462 dbSNP
rs1168438962 1464 dbSNP
rs1244742178 1464 dbSNP
rs1320398361 1466 dbSNP
rs1298351395 1467 dbSNP
rs1354066382 1469 dbSNP
rs1006017506 1471 dbSNP
rs1365289724 1472 dbSNP
rs1300159710 1473 dbSNP
rs1377227024 1474 dbSNP
rs1016984262 1477 dbSNP
rs1452404081 1477 dbSNP
rs1319541316 1478 dbSNP
rs1432363836 1480 dbSNP
rs1316126944 1481 dbSNP
rs569337043 1484 dbSNP
rs1293856910 1485 dbSNP
rs1457364357 1488 dbSNP
rs1366696559 1491 dbSNP
rs1385626241 1497 dbSNP
rs539410864 1502 dbSNP
rs1048921651 1504 dbSNP
rs149650297 1504 dbSNP
rs558147459 1505 dbSNP
rs1389572201 1516 dbSNP
rs948971877 1519 dbSNP
rs1186916106 1525 dbSNP
rs1045989074 1530 dbSNP
rs577035397 1534 dbSNP
rs554117590 1535 dbSNP
rs374948813 1537 dbSNP
rs1037525721 1539 dbSNP
rs898618373 1541 dbSNP
rs955445107 1544 dbSNP
rs1332416574 1549 dbSNP
rs1301511741 1551 dbSNP
rs1386045577 1556 dbSNP
rs1205979212 1561 dbSNP
rs181923957 1564 dbSNP
rs995988256 1566 dbSNP
rs1460568705 1578 dbSNP
rs1370063107 1579 dbSNP
rs549235498 1580 dbSNP
rs888926659 1583 dbSNP
rs146787435 1587 dbSNP
rs574727981 1588 dbSNP
rs989857144 1596 dbSNP
rs1431860757 1601 dbSNP
rs776387663 1603 dbSNP
rs915611685 1606 dbSNP
rs1183538684 1617 dbSNP
rs541944192 1623 dbSNP
rs1273314091 1624 dbSNP
rs966104451 1627 dbSNP
rs1420101193 1632 dbSNP
rs981013657 1638 dbSNP
rs1256292300 1639 dbSNP
rs1429248879 1643 dbSNP
rs1232006177 1647 dbSNP
rs1329142374 1648 dbSNP
rs748058110 1648 dbSNP
rs563329290 1649 dbSNP
rs1349853002 1651 dbSNP
rs868622426 1664 dbSNP
rs939572437 1676 dbSNP
rs1047237189 1677 dbSNP
rs530642775 1679 dbSNP
rs2975748 1681 dbSNP
rs116588203 1685 dbSNP
rs916098494 1686 dbSNP
rs1160296791 1688 dbSNP
rs72999942 1690 dbSNP
rs1250298027 1693 dbSNP
rs981698457 1696 dbSNP
rs928864215 1704 dbSNP
rs940263879 1705 dbSNP
rs899855252 1712 dbSNP
rs996867652 1715 dbSNP
rs1199555595 1724 dbSNP
rs1342377389 1728 dbSNP
rs1037068010 1739 dbSNP
rs1433346815 1742 dbSNP
rs919904028 1743 dbSNP
rs1051063511 1748 dbSNP
rs1270172158 1749 dbSNP
rs763078053 1754 dbSNP
rs546927583 1755 dbSNP
rs1161591408 1760 dbSNP
rs891053004 1761 dbSNP
rs1333540494 1763 dbSNP
rs931434790 1764 dbSNP
rs1298473140 1766 dbSNP
rs1160140877 1771 dbSNP
rs1457104279 1775 dbSNP
rs999139074 1776 dbSNP
rs1322418124 1784 dbSNP
rs2975749 1785 dbSNP
rs957425192 1786 dbSNP
rs888957751 1789 dbSNP
rs1011310822 1790 dbSNP
rs1368562003 1792 dbSNP
rs1022652237 1793 dbSNP
rs774635917 1799 dbSNP
rs969758287 1804 dbSNP
rs1264608044 1812 dbSNP
rs1440169821 1825 dbSNP
rs981087259 1828 dbSNP
rs1208954154 1832 dbSNP
rs1265933902 1835 dbSNP
rs1464285721 1835 dbSNP
rs1214778193 1844 dbSNP
rs35268011 1851 dbSNP
rs1242658537 1853 dbSNP
rs529398686 1856 dbSNP
rs545267887 1856 dbSNP
rs1283500649 1867 dbSNP
rs576138882 1868 dbSNP
rs1367435524 1870 dbSNP
rs960993654 1872 dbSNP
rs1427219702 1874 dbSNP
rs999167108 1879 dbSNP
rs1386948875 1880 dbSNP
rs1480143667 1881 dbSNP
rs983429127 1883 dbSNP
rs778514841 1897 dbSNP
rs867939275 1906 dbSNP
rs908736438 1907 dbSNP
rs1161976007 1908 dbSNP
rs767945500 1915 dbSNP
rs1038521864 1933 dbSNP
rs537565784 1946 dbSNP
rs1031357373 1947 dbSNP
rs1188812726 1951 dbSNP
rs921362096 1953 dbSNP
rs1448456995 1955 dbSNP
rs957236287 1959 dbSNP
rs1318022161 1960 dbSNP
rs1223551838 1963 dbSNP
rs1346308600 1972 dbSNP
rs1433428281 1973 dbSNP
rs1301822553 1983 dbSNP
rs753159217 1988 dbSNP
rs1344424441 1992 dbSNP
rs1051098610 1996 dbSNP
rs1298373741 2002 dbSNP
rs761229615 2003 dbSNP
rs1363351484 2012 dbSNP
rs747704475 2014 dbSNP
rs115144879 2020 dbSNP
rs1349655113 2028 dbSNP
rs1053432591 2029 dbSNP
rs1284613550 2033 dbSNP
rs139472387 2034 dbSNP
rs1011383844 2039 dbSNP
rs1219359248 2042 dbSNP
rs1022725972 2043 dbSNP
rs961679960 2048 dbSNP
rs905630989 2049 dbSNP
rs551464856 2051 dbSNP
rs1002540929 2052 dbSNP
rs749935516 2055 dbSNP
rs950419193 2056 dbSNP
rs983077278 2069 dbSNP
rs1197194874 2070 dbSNP
rs1016276643 2072 dbSNP
rs757935016 2073 dbSNP
rs1275238186 2074 dbSNP
rs962926218 2077 dbSNP
rs931280323 2089 dbSNP
rs566892811 2094 dbSNP
rs1305835027 2096 dbSNP
rs921392902 2100 dbSNP
rs771734396 2105 dbSNP
rs911347526 2116 dbSNP
rs534907315 2118 dbSNP
rs1273405938 2119 dbSNP
rs932761401 2128 dbSNP
rs987282307 2133 dbSNP
rs1040214988 2135 dbSNP
rs1307923375 2136 dbSNP
rs1408757531 2139 dbSNP
rs912593511 2140 dbSNP
rs1177806236 2146 dbSNP
rs1414616582 2158 dbSNP
rs934640831 2161 dbSNP
rs114091281 2163 dbSNP
rs777608909 2164 dbSNP
rs893069595 2166 dbSNP
rs79385744 2169 dbSNP
rs535606745 2177 dbSNP
rs1044214310 2184 dbSNP
rs1479707789 2190 dbSNP
rs557137756 2194 dbSNP
rs113891417 2195 dbSNP
rs1311772947 2198 dbSNP
rs1304391063 2199 dbSNP
rs1002604739 2200 dbSNP
rs1230664669 2211 dbSNP
rs1333627924 2223 dbSNP
rs1288333737 2231 dbSNP
rs1440948597 2234 dbSNP
rs1002608919 2240 dbSNP
rs866986584 2241 dbSNP
rs1035881468 2248 dbSNP
rs1304037239 2249 dbSNP
rs1448097891 2255 dbSNP
rs1279760067 2258 dbSNP
rs1352660794 2261 dbSNP
rs1035826677 2264 dbSNP
rs1412365848 2272 dbSNP
rs1158344304 2273 dbSNP
rs374025699 2275 dbSNP
rs1243463620 2280 dbSNP
rs779537013 2282 dbSNP
rs1004967354 2283 dbSNP
rs1210804550 2284 dbSNP
rs952964710 2284 dbSNP
rs985463255 2298 dbSNP
rs1223322543 2299 dbSNP
rs185908131 2301 dbSNP
rs116519053 2302 dbSNP
rs974319723 2308 dbSNP
rs1028529169 2317 dbSNP
rs367597768 2336 dbSNP
rs1312485062 2338 dbSNP
rs1233635953 2339 dbSNP
rs372823424 2340 dbSNP
rs1471388425 2342 dbSNP
rs754638631 2348 dbSNP
rs572841075 2349 dbSNP
rs1165387949 2350 dbSNP
rs142879164 2352 dbSNP
rs758834104 2358 dbSNP
rs558595937 2359 dbSNP
rs912658403 2360 dbSNP
rs934734436 2366 dbSNP
rs989228069 2367 dbSNP
rs1203797787 2368 dbSNP
rs781011834 2372 dbSNP
rs934452957 2373 dbSNP
rs562002554 2376 dbSNP
rs1053043398 2380 dbSNP
rs947347673 2382 dbSNP
rs1044275352 2383 dbSNP
rs1337141935 2388 dbSNP
rs1230193362 2394 dbSNP
rs1365542307 2398 dbSNP
rs1380378248 2401 dbSNP
rs1369446412 2402 dbSNP
rs1294055378 2406 dbSNP
rs905726847 2408 dbSNP
rs938530380 2411 dbSNP
rs1056936314 2416 dbSNP
rs893098061 2424 dbSNP
rs1383452201 2428 dbSNP
rs1248152472 2431 dbSNP
rs886194786 2433 dbSNP
rs1268336460 2438 dbSNP
rs1004596459 2441 dbSNP
rs115835704 2442 dbSNP
rs1435293192 2448 dbSNP
rs769706154 2449 dbSNP
rs1044111361 2450 dbSNP
rs1195280871 2451 dbSNP
rs151055462 2466 dbSNP
rs1277374251 2476 dbSNP
rs1206728026 2477 dbSNP
rs1342244567 2481 dbSNP
rs995787575 2482 dbSNP
rs1224714883 2485 dbSNP
rs1028561877 2486 dbSNP
rs954255093 2487 dbSNP
rs749297968 2489 dbSNP
rs770911214 2490 dbSNP
rs1027149079 2498 dbSNP
rs78712331 2502 dbSNP
rs1166376836 2505 dbSNP
rs988910664 2510 dbSNP
rs771073913 2516 dbSNP
rs1167943278 2519 dbSNP
rs1398189284 2520 dbSNP
rs1183512833 2521 dbSNP
rs1483102948 2525 dbSNP
rs1249126758 2527 dbSNP
rs1467848202 2530 dbSNP
rs111659926 2538 dbSNP
rs1256200828 2542 dbSNP
rs1406625207 2548 dbSNP
rs980047288 2549 dbSNP
rs976868692 2550 dbSNP
rs927224301 2551 dbSNP
rs367901384 2563 dbSNP
rs1290153716 2565 dbSNP
rs1228862944 2570 dbSNP
rs1335282883 2571 dbSNP
rs1057366507 2572 dbSNP
rs115271992 2577 dbSNP
rs1270781101 2578 dbSNP
rs1320288211 2586 dbSNP
rs940468649 2587 dbSNP
rs1336312831 2606 dbSNP
rs1468618984 2607 dbSNP
rs1221978109 2608 dbSNP
rs1160556893 2610 dbSNP
rs1470036220 2615 dbSNP
rs566751079 2620 dbSNP
rs1362731086 2626 dbSNP
rs1179110774 2630 dbSNP
rs1037442152 2634 dbSNP
rs989084439 2636 dbSNP
rs1256491649 2637 dbSNP
rs1202579086 2640 dbSNP
rs1262746258 2642 dbSNP
rs1269745099 2646 dbSNP
rs914394301 2650 dbSNP
rs1462079091 2651 dbSNP
rs1202526354 2657 dbSNP
rs111509617 2663 dbSNP
rs1044308404 2664 dbSNP
rs1450633030 2666 dbSNP
rs995861105 2668 dbSNP
rs1050060519 2669 dbSNP
rs890043293 2670 dbSNP
rs1321581194 2673 dbSNP
rs1008441662 2674 dbSNP
rs1056797946 2675 dbSNP
rs1446892518 2677 dbSNP
rs1020243174 2692 dbSNP
rs1165503987 2693 dbSNP
rs956226663 2693 dbSNP
rs1385242454 2700 dbSNP
rs1010758084 2703 dbSNP
rs1021681097 2706 dbSNP
rs896933339 2707 dbSNP
rs993921184 2710 dbSNP
rs1446213234 2711 dbSNP
rs541069452 2713 dbSNP
rs1211501445 2715 dbSNP
rs1479165759 2719 dbSNP
rs968743777 2721 dbSNP
rs1027134185 2723 dbSNP
rs1244081487 2733 dbSNP
rs150346106 2736 dbSNP
rs927257026 2741 dbSNP
rs1470846253 2745 dbSNP
rs568330889 2751 dbSNP
rs1430546777 2758 dbSNP
rs960268531 2767 dbSNP
rs181268232 2768 dbSNP
rs888593369 2772 dbSNP
rs1365686674 2773 dbSNP
rs1162432176 2776 dbSNP
rs907730360 2780 dbSNP
rs1384165948 2790 dbSNP
rs1422185948 2796 dbSNP
rs940516934 2797 dbSNP
rs1007108355 2798 dbSNP
rs116682558 2808 dbSNP
rs965349844 2809 dbSNP
rs920357536 2811 dbSNP
rs1200948485 2814 dbSNP
rs1490478377 2818 dbSNP
rs1268067072 2826 dbSNP
rs1220403758 2830 dbSNP
rs1209607839 2832 dbSNP
rs1344402831 2833 dbSNP
rs185586223 2834 dbSNP
rs1214136566 2835 dbSNP
rs1337892460 2835 dbSNP
rs147652150 2836 dbSNP
rs761174617 2838 dbSNP
rs1437606218 2840 dbSNP
rs890127860 2841 dbSNP
rs764634363 2843 dbSNP
rs1282941028 2844 dbSNP
rs544304140 2850 dbSNP
rs559320364 2857 dbSNP
rs1371801411 2860 dbSNP
rs1324481280 2862 dbSNP
rs1170710515 2866 dbSNP
rs1408967530 2867 dbSNP
rs572611938 2871 dbSNP
rs1417153042 2877 dbSNP
rs1174156327 2882 dbSNP
rs1235932555 2884 dbSNP
rs1259268977 2885 dbSNP
rs1428595342 2891 dbSNP
rs957034655 2894 dbSNP
rs1484079764 2896 dbSNP
rs989560994 2905 dbSNP
rs1204118384 2907 dbSNP
rs1265931044 2912 dbSNP
rs1280958592 2916 dbSNP
rs1224576661 2920 dbSNP
rs142271436 2926 dbSNP
rs1010371640 2928 dbSNP
rs1021712444 2933 dbSNP
rs1269191026 2934 dbSNP
rs191127117 2936 dbSNP
rs980018118 2937 dbSNP
rs1434473481 2938 dbSNP
rs1440809712 2940 dbSNP
rs561367880 2941 dbSNP
rs904617042 2944 dbSNP
rs1001570608 2946 dbSNP
rs1335776880 2947 dbSNP
rs1470178558 2951 dbSNP
rs1428270139 2957 dbSNP
rs1034797745 2960 dbSNP
rs960054513 2963 dbSNP
rs1473503554 2965 dbSNP
rs376929785 2974 dbSNP
rs938605142 2992 dbSNP
rs1468660198 2994 dbSNP
rs1057232168 3007 dbSNP
rs1363073336 3008 dbSNP
rs1204479127 3011 dbSNP
rs1461152745 3024 dbSNP
rs542145184 3030 dbSNP
rs962241402 3037 dbSNP
rs1363617471 3044 dbSNP
rs1048106221 3053 dbSNP
rs1306878554 3061 dbSNP
rs765893476 3063 dbSNP
rs1422850079 3070 dbSNP
rs973241808 3077 dbSNP
rs573973590 3083 dbSNP
rs931760223 3085 dbSNP
rs1388800643 3094 dbSNP
rs544924332 3102 dbSNP
rs985871371 3105 dbSNP
rs1285609015 3109 dbSNP
rs562931927 3112 dbSNP
rs1405111430 3117 dbSNP
rs944372095 3124 dbSNP
rs533622177 3125 dbSNP
rs1345782650 3131 dbSNP
rs1158266488 3134 dbSNP
rs1399036280 3136 dbSNP
rs369262112 3140 dbSNP
rs4676422 3145 dbSNP
rs1043244066 3152 dbSNP
rs1357872338 3160 dbSNP
rs866679251 3161 dbSNP
rs1241508801 3163 dbSNP
rs1221097463 3164 dbSNP
rs1001601880 3165 dbSNP
rs1190955960 3166 dbSNP
rs956708303 3168 dbSNP
rs74004104 3172 dbSNP
rs747381969 3174 dbSNP
rs895864800 3176 dbSNP
rs1014270285 3177 dbSNP
rs1249345618 3183 dbSNP
rs1419506708 3215 dbSNP
rs146069755 3219 dbSNP
rs961959159 3226 dbSNP
rs116906941 3228 dbSNP
rs973315358 3238 dbSNP
rs138672840 3255 dbSNP
rs1362321851 3270 dbSNP
rs377408018 3273 dbSNP
rs1288218114 3278 dbSNP
rs1451495439 3283 dbSNP
rs1351713609 3286 dbSNP
rs979967601 3288 dbSNP
rs953179643 3292 dbSNP
rs1424066524 3295 dbSNP
rs1179296555 3296 dbSNP
rs1366342586 3299 dbSNP
rs927101437 3303 dbSNP
rs1459477023 3305 dbSNP
rs985903942 3310 dbSNP
rs911656417 3314 dbSNP
rs1185308573 3315 dbSNP
rs960255048 3316 dbSNP
rs944418172 3324 dbSNP
rs987825417 3328 dbSNP
rs1358087918 3331 dbSNP
rs913554976 3338 dbSNP
rs992737686 3341 dbSNP
rs35043844 3343 dbSNP
rs563990987 3347 dbSNP
rs752431347 3349 dbSNP
rs1311832182 3350 dbSNP
rs929622532 3365 dbSNP
rs1245966496 3367 dbSNP
rs1404476295 3375 dbSNP
rs1363731380 3376 dbSNP
rs1043274972 3381 dbSNP
rs1323041103 3383 dbSNP
rs926146358 3385 dbSNP
rs1372697477 3386 dbSNP
rs1168826729 3389 dbSNP
rs1434327197 3390 dbSNP
rs1201800369 3397 dbSNP
rs1435272543 3402 dbSNP
rs1250439744 3406 dbSNP
rs1199254011 3415 dbSNP
rs1490044319 3419 dbSNP
rs1174437102 3430 dbSNP
rs1480734220 3435 dbSNP
rs909673390 3436 dbSNP
rs183022015 3437 dbSNP
rs1480784674 3440 dbSNP
rs1056338817 3441 dbSNP
rs1240981398 3445 dbSNP
rs2953176 3446 dbSNP
rs1184175263 3447 dbSNP
rs1014716099 3455 dbSNP
rs1222751189 3473 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cgcucucaCGCCCGGGGUCCUc 5'
                  | | |:||||||| 
Target 5' ------caGGGAGUCCCAGGAc 3'
1 - 16
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000270357.4 | 3UTR | CAGGGAGUCCCAGGACCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
190 hsa-miR-1343-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT106691 TGFBR1 transforming growth factor beta receptor 1 2 2
MIRT139902 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT165720 PANK3 pantothenate kinase 3 2 2
MIRT248351 CBX5 chromobox 5 2 2
MIRT286658 ZNF207 zinc finger protein 207 2 6
MIRT382505 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT444443 PLCXD2 phosphatidylinositol specific phospholipase C X domain containing 2 2 2
MIRT446605 HIP1 huntingtin interacting protein 1 2 2
MIRT447106 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT465216 TRIP10 thyroid hormone receptor interactor 10 2 2
MIRT465244 TRIM44 tripartite motif containing 44 2 2
MIRT467950 SLC16A1 solute carrier family 16 member 1 2 2
MIRT473956 LRRC58 leucine rich repeat containing 58 2 2
MIRT478522 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT479275 CHD4 chromodomain helicase DNA binding protein 4 2 6
MIRT480078 CALR calreticulin 2 2
MIRT481221 ATXN7L3 ataxin 7 like 3 2 2
MIRT481967 AMOTL2 angiomotin like 2 2 2
MIRT483021 KHSRP KH-type splicing regulatory protein 2 4
MIRT485625 EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 2 2
MIRT487102 SCARF2 scavenger receptor class F member 2 2 2
MIRT492517 RAB15 RAB15, member RAS oncogene family 2 4
MIRT492543 PRX periaxin 2 6
MIRT504979 ZNF704 zinc finger protein 704 2 6
MIRT506171 PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 2 4
MIRT507280 FEM1B fem-1 homolog B 2 2
MIRT520171 WBP2 WW domain binding protein 2 2 4
MIRT521288 RRAGD Ras related GTP binding D 2 4
MIRT522080 NUP50 nucleoporin 50 2 4
MIRT525769 SOD2 superoxide dismutase 2 2 2
MIRT526403 TFAM transcription factor A, mitochondrial 2 2
MIRT528554 DNAAF3 dynein axonemal assembly factor 3 2 2
MIRT528709 S100A2 S100 calcium binding protein A2 2 2
MIRT531516 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT538023 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT539555 CNKSR3 CNKSR family member 3 2 4
MIRT540032 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540223 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540240 RGS17 regulator of G protein signaling 17 2 2
MIRT540864 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT540890 SRSF9 serine and arginine rich splicing factor 9 2 2
MIRT541327 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT541846 PLIN5 perilipin 5 2 2
MIRT546218 TNRC18P2 trinucleotide repeat containing 18 pseudogene 2 2 4
MIRT550019 BAG1 BCL2 associated athanogene 1 2 2
MIRT551430 F2 coagulation factor II, thrombin 2 2
MIRT558608 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT564309 CCNT1 cyclin T1 2 2
MIRT565287 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT571944 LARP1 La ribonucleoprotein domain family member 1 2 2
MIRT572138 DESI1 desumoylating isopeptidase 1 2 2
MIRT572262 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT573586 CERS1 ceramide synthase 1 2 2
MIRT574114 CDCP1 CUB domain containing protein 1 2 2
MIRT610657 SASH1 SAM and SH3 domain containing 1 2 2
MIRT611150 ZNF486 zinc finger protein 486 2 2
MIRT613491 ZNF488 zinc finger protein 488 2 2
MIRT613997 KPNA5 karyopherin subunit alpha 5 2 2
MIRT614805 RIOK3 RIO kinase 3 2 2
MIRT616094 HOXB5 homeobox B5 2 2
MIRT617334 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617376 FAM227A family with sequence similarity 227 member A 2 2
MIRT620884 ANO7 anoctamin 7 2 2
MIRT620917 LRRTM2 leucine rich repeat transmembrane neuronal 2 2 2
MIRT621216 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT622781 PGK1 phosphoglycerate kinase 1 2 2
MIRT624559 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT626014 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626359 DIS3L DIS3 like exosome 3'-5' exoribonuclease 2 2
MIRT627476 STRN striatin 2 2
MIRT629250 KDM2B lysine demethylase 2B 2 2
MIRT630531 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT630769 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT631296 CBS cystathionine-beta-synthase 2 2
MIRT633131 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT634875 SENP8 SUMO/sentrin peptidase family member, NEDD8 specific 2 2
MIRT635337 RBL1 RB transcriptional corepressor like 1 2 2
MIRT636947 APTX aprataxin 2 2
MIRT637799 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT638619 GSR glutathione-disulfide reductase 2 4
MIRT639803 AHCY adenosylhomocysteinase 2 2
MIRT640389 ZNF785 zinc finger protein 785 2 2
MIRT642194 SMAGP small cell adhesion glycoprotein 2 2
MIRT643014 LETM2 leucine zipper and EF-hand containing transmembrane protein 2 2 2
MIRT645119 HES2 hes family bHLH transcription factor 2 2 2
MIRT645637 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT646035 NPR1 natriuretic peptide receptor 1 2 2
MIRT646560 ALDH5A1 aldehyde dehydrogenase 5 family member A1 2 2
MIRT647782 ASB8 ankyrin repeat and SOCS box containing 8 2 2
MIRT647956 FBXO31 F-box protein 31 2 2
MIRT648085 FAM192A family with sequence similarity 192 member A 2 2
MIRT648666 ZNF626 zinc finger protein 626 2 2
MIRT649241 TRIM65 tripartite motif containing 65 2 2
MIRT649300 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT650509 UFM1 ubiquitin fold modifier 1 2 2
MIRT651385 ZBTB16 zinc finger and BTB domain containing 16 2 2
MIRT651808 USP49 ubiquitin specific peptidase 49 2 2
MIRT652468 TMEM181 transmembrane protein 181 2 2
MIRT652580 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT653026 STX1B syntaxin 1B 2 2
MIRT654759 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT655195 PHAX phosphorylated adaptor for RNA export 2 2
MIRT655530 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT655890 NEK9 NIMA related kinase 9 2 2
MIRT656562 LYRM7 LYR motif containing 7 2 2
MIRT657192 IKZF3 IKAROS family zinc finger 3 2 2
MIRT657807 GJD3 gap junction protein delta 3 2 2
MIRT658692 EMC3 ER membrane protein complex subunit 3 2 2
MIRT660201 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660982 ABHD2 abhydrolase domain containing 2 2 2
MIRT661254 FANCA Fanconi anemia complementation group A 2 2
MIRT661818 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT665575 TUBD1 tubulin delta 1 2 2
MIRT666455 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT666512 RNF170 ring finger protein 170 2 2
MIRT666968 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 2
MIRT667272 NAV1 neuron navigator 1 2 2
MIRT668150 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT668327 FKBP5 FK506 binding protein 5 2 2
MIRT669302 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT671678 ADK adenosine kinase 2 2
MIRT673597 HPSE heparanase 2 2
MIRT673747 ZNF333 zinc finger protein 333 2 2
MIRT674805 FAM229B family with sequence similarity 229 member B 2 2
MIRT675134 ZNF347 zinc finger protein 347 2 2
MIRT675284 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675389 SVOP SV2 related protein 2 2
MIRT675786 MED28 mediator complex subunit 28 2 2
MIRT676149 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676557 VSIG1 V-set and immunoglobulin domain containing 1 2 2
MIRT676642 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676709 METTL14 methyltransferase like 14 2 2
MIRT676807 SHROOM4 shroom family member 4 2 2
MIRT677083 SMIM15 small integral membrane protein 15 2 2
MIRT677191 MURC caveolae associated protein 4 2 2
MIRT677271 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677343 POC1A POC1 centriolar protein A 2 2
MIRT677502 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677520 OCIAD2 OCIA domain containing 2 2 2
MIRT677617 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT677657 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT677721 SSR1 signal sequence receptor subunit 1 2 2
MIRT677797 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT678142 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678205 CSNK1E casein kinase 1 epsilon 2 2
MIRT678374 VTA1 vesicle trafficking 1 2 2
MIRT678706 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT679037 LACTB lactamase beta 2 2
MIRT679078 PURB purine rich element binding protein B 2 2
MIRT679134 SYK spleen associated tyrosine kinase 2 2
MIRT679293 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679739 CABP4 calcium binding protein 4 2 2
MIRT679944 AS3MT arsenite methyltransferase 2 2
MIRT679974 E2F2 E2F transcription factor 2 2 2
MIRT680386 OXA1L OXA1L, mitochondrial inner membrane protein 2 2
MIRT683626 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT683899 PSMB9 proteasome subunit beta 9 2 2
MIRT684170 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684228 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT685398 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686251 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT687511 NCKAP1 NCK associated protein 1 2 2
MIRT688241 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688312 FAM151B family with sequence similarity 151 member B 2 2
MIRT688730 CNDP1 carnosine dipeptidase 1 2 2
MIRT689029 ANGPTL3 angiopoietin like 3 2 2
MIRT692514 PARD3 par-3 family cell polarity regulator 2 2
MIRT693728 ACACA acetyl-CoA carboxylase alpha 2 2
MIRT698886 SPTBN2 spectrin beta, non-erythrocytic 2 2 2
MIRT702564 JARID2 jumonji and AT-rich interaction domain containing 2 2 2
MIRT709949 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT710157 MTRF1L mitochondrial translational release factor 1 like 2 2
MIRT710225 KCNK1 potassium two pore domain channel subfamily K member 1 2 2
MIRT711539 MSH3 mutS homolog 3 2 2
MIRT712444 KHNYN KH and NYN domain containing 2 2
MIRT712458 KCNC3 potassium voltage-gated channel subfamily C member 3 2 2
MIRT714696 MT1A metallothionein 1A 2 2
MIRT715306 POLR2E RNA polymerase II subunit E 2 2
MIRT716599 MPPED1 metallophosphoesterase domain containing 1 2 2
MIRT717602 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT718824 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT720407 SPRED3 sprouty related EVH1 domain containing 3 2 2
MIRT720503 PHKG2 phosphorylase kinase catalytic subunit gamma 2 2 2
MIRT722479 QSOX1 quiescin sulfhydryl oxidase 1 2 2
MIRT722519 PLXNA2 plexin A2 2 2
MIRT723308 PRKCH protein kinase C eta 2 2
MIRT724332 RNPEPL1 arginyl aminopeptidase like 1 2 2
MIRT732625 DUOX2 dual oxidase 2 1 0
MIRT733418 LINC02323 long intergenic non-protein coding RNA 2323 3 0
MIRT736453 TGFB1 transforming growth factor beta 1 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1343 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-1343 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-1343-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-1343-3p Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-1343-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1343-3p Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1343-3p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-1343-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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