pre-miRNA Information
pre-miRNA hsa-mir-660   
Genomic Coordinates chrX: 50013241 - 50013337
Synonyms MIRN660, hsa-mir-660, MIR660
Description Homo sapiens miR-660 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-660-3p
Sequence 52| ACCUCCUGUGUGCAUGGAUUA |72
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1221699333 1 dbSNP
rs781893004 6 dbSNP
rs180785970 8 dbSNP
rs1272406504 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PXDN   
Synonyms ASGD7, COPOA, D2S448, D2S448E, MG50, PRG2, PXN, VPO
Description peroxidasin
Transcript NM_012293   
Expression
Putative miRNA Targets on PXDN
3'UTR of PXDN
(miRNA target sites are highlighted)
>PXDN|NM_012293|3'UTR
   1 GCTCCTGGGAGGCTCCTCAGAGTTTGTCTGCTGTGCCATCGTGAGATCGGGTGGCCGATGGCAGGGAGCTGCGGACTGCA
  81 GACCAGGAAACACCCAGAACTCGTGACATTTCATGACAACGTCCAGCTGGTGCTGTTACAGAAGGCAGTGCAGGAGGCTT
 161 CCAACCAGAGCATCTGCGGAGAAGGAGGCACAGCAGGTGCCTGAAGGGAAGCAGGCAGGAGTCCTAGCTTCACGTTAGAC
 241 TTCTCAGGTTTTTATTTAATTCTTTTAAAATGAAAAATTGGTGCTACTATTAAATTGCACAGTTGAATCATTTAGGCGCC
 321 TAAATTGATTTTGCCTCCCAACACCATTTCTTTTTAAATAAAGCAGGATACCTCTATATGTCAGCCTTGCCTTGTTCAGA
 401 TGCCAGGAGCCGGCAGACCTGTCACCCGCAGGTGGGGTGAGTCTTGGAGCTGCCAGAGGGGCTCACCGAAATCGGGGTTC
 481 CATCACAAGCTATGTTTAAAAAGAAAATTGGTGTTTGGCAAACGGAACAGAACCTTTGATGAGAGCGTTCACAGGGACAC
 561 TGTCTGGGGGTGCAGTGCAAGCCCCCGGCCTCTTCCCTGGGAACCTCTGAACTCCTCCTTCCTCTGGGCTCTCTGTAACA
 641 TTTCACCACACGTCAGCATCTAATCCCAAGACAAACATTCCCGCTGCTCGAAGCAGCTGTATAGCCTGTGACTCTCCGTG
 721 TGTCAGCTCCTTCCACACCTGATTAGAACATTCATAAGCCACATTTAGAAACAGGTTTGCTTTCAGCTGTCACTTGCACA
 801 CATACTGCCTAGTTGTGAACCAAATGTGAAAAAACCTCCTTCATCCCATTGTGTATCTGATACCTGCCGAGGGCCAAGGG
 881 TGTGTGTTGACAACGCCGCTCCCAGCCGGCCCTGGTTGCGTCCACGTCCTGAACAAGAGCCGCTTCCGGATGGCTCTTCC
 961 CAAGGGAGGAGGAGCTCAAGTGTCGGGAACTGTCTAACTTCAGGTTGTGTGAGTGCGTTAAAAAAAAAAAAAAAAAAGAA
1041 TCCCTATACCTCATTTGTATTTTTAAAATGCGTGATGTTTTATGAAATTGTGTCCATTTTTTAGGTATTAGATATGGCAG
1121 AAAAACCATTTCCACTATGCAAAGTTCTTTTAGACGTCAGTGAAAATCAACTCTCATACCTCATGGTCTCTCTTTAATTG
1201 ACCAAAACCTTCCATTTTTCTCTAAATACAAAGCGATCTGTGTTCTGAGCAACCTTTCCCCGAACACACAGCTTCAGTGC
1281 AGCACGCTGACCTGAGTATCCACCATGTGCCAGGCACAGTGCTGGGCACACGAGGCACCAAGGTCCGGGCCACCTGCCCG
1361 CAGCAAGGCCCAGCTGAGGTGGTGGAGGGAGCCCCTGAGGTCAGGGGCCGTTTCGGTTCAGGGTGGCAGGTGTCCAGCAC
1441 TGGGGTATGGCGTCGAGGCTTCCATGGGGTGGGGGAGGCCAGCTTCCTTCTGACAGGATGGGCGCATACAGTGCCTGGTG
1521 TGATTTGTGCACAACCCGTGTTCCAGGTGCACATCCTCCCAAGGAGACACCCAGACCCTTCCAGCACGGGCCGGCCAAGT
1601 TGCTGCGGCGGAGGCAGCATTTCAGCTGTGAGGAAGGTCATTGGATTCATGTGTTTTATCTGTAAAAATGGTTGTCTTAA
1681 CTTCTTAACCTCATATTGGTAAGTGATTGATAAAAATTGGTTGGTGTTTCATGACATGTGGACTTCTTTTGAAATAGCAA
1761 GTCAAATGTAGTGACCAAATTGTGGAAGAGATTTCTGTCAAATAGGAAATGTGTAAGTTCGTCTAAAAGCTGATGGTTAT
1841 GTAAGTTGCTCAGGCACTCAGATGACAGCAGATTCTGGGTTCTGGGAGTGTTCTGTGCCTCTTACATGCCCTGGAGGCCT
1921 CATGGTCTCAGTGCTGAGGCGGCACACCTGTAGCACACCTGCGTAATGTGCGGTCTGGGCCAGTCACAAGGAATTGTGTT
2001 GTCTAAGCCAAAGGGGGAAGCTGACTGTGATTTACCAAAAAAAATTCTGTAATTCAAACCAAAATGTCTGCGGAATCACC
2081 AGTTTGATACTCTCTGTAATCAGAACAGTGGGCAGTGCCTGGGTGAACGTGTCTAGCAGCCACTGTGCGGGATCGCTGTA
2161 ACAGGAGTGGAATGTACATATTTATTTACTTTTCTAACTGCTCCAACAGCCAAATGCCTTTTTTATGACCATTGTATTCA
2241 GTTCATTACCAAAGAAATGTTTGCACTTTGTAATGATGCCTTTCAGTTCAAATAAATGGGTCACATTTTCAAATGGAAAA
2321 AAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auuaggUACGU-GUGUCCUCCa 5'
                | ||| ::||||||| 
Target 5' tacagaAGGCAGTGCAGGAGGc 3'
137 - 158 151.00 -14.80
2
miRNA  3' auUAGGUACGUGUGUCCUCca 5'
            |||  ||:| |||||||  
Target 5' ggATCGCTGTA-ACAGGAGtg 3'
2150 - 2169 142.00 -14.60
3
miRNA  3' auuaggUACGUGUGUCCUCca 5'
                | ||| :||||||  
Target 5' gaagggAAGCAGGCAGGAGtc 3'
203 - 223 135.00 -14.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
260217 1 ClinVar
1191060 158 ClinVar
1181985 328 ClinVar
COSN31499650 11 COSMIC
COSN30614733 29 COSMIC
COSN30636763 31 COSMIC
COSN30174311 40 COSMIC
COSN16160492 65 COSMIC
COSN30399702 67 COSMIC
COSN1803126 72 COSMIC
COSN31602147 97 COSMIC
COSN30166062 112 COSMIC
COSN6151639 127 COSMIC
COSN17223495 177 COSMIC
COSN7113313 178 COSMIC
COSN30166493 296 COSMIC
COSN26569691 328 COSMIC
COSN31533433 345 COSMIC
COSN31527774 385 COSMIC
COSN31523389 409 COSMIC
COSN23508307 428 COSMIC
COSN31515072 443 COSMIC
COSN15810490 467 COSMIC
COSN5487784 508 COSMIC
COSN14499423 587 COSMIC
COSN15924545 645 COSMIC
COSN14900053 819 COSMIC
COSN15194303 861 COSMIC
COSN7113272 908 COSMIC
COSN20096250 1019 COSMIC
COSN23954621 1019 COSMIC
COSN27285053 1019 COSMIC
COSN19036520 1105 COSMIC
COSN31550161 1107 COSMIC
COSN31520341 1147 COSMIC
COSN31592368 1199 COSMIC
COSN6151592 1203 COSMIC
COSN30539917 1234 COSMIC
COSN31565816 1259 COSMIC
COSN20090484 1356 COSMIC
COSN4798547 1360 COSMIC
COSN14513914 1410 COSMIC
COSN23792584 1799 COSMIC
COSN31778273 1923 COSMIC
COSN14445497 1994 COSMIC
COSN8761625 2040 COSMIC
COSN6555183 2128 COSMIC
COSN31516145 2139 COSMIC
COSN31571510 2254 COSMIC
COSN31485772 2310 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs886038586 1 dbSNP
rs1160729355 2 dbSNP
rs1417342925 4 dbSNP
rs1172705377 9 dbSNP
rs1478058612 12 dbSNP
rs1429348034 17 dbSNP
rs1416886204 22 dbSNP
rs946301898 26 dbSNP
rs1484324390 28 dbSNP
rs781179832 31 dbSNP
rs1203966283 38 dbSNP
rs375570843 40 dbSNP
rs757428555 41 dbSNP
rs1219783733 44 dbSNP
rs1334615964 45 dbSNP
rs369453627 48 dbSNP
rs764442418 49 dbSNP
rs1028241766 56 dbSNP
rs992906450 61 dbSNP
rs1240028820 66 dbSNP
rs1490892111 68 dbSNP
rs1197072480 72 dbSNP
rs995528462 73 dbSNP
rs1447372073 76 dbSNP
rs866955337 86 dbSNP
rs1178883307 87 dbSNP
rs1405642170 92 dbSNP
rs1015534783 94 dbSNP
rs1418599199 100 dbSNP
rs753920892 102 dbSNP
rs907068506 103 dbSNP
rs1422351163 108 dbSNP
rs952553273 121 dbSNP
rs919771186 128 dbSNP
rs567001195 130 dbSNP
rs972654522 137 dbSNP
rs1371755433 139 dbSNP
rs961596144 140 dbSNP
rs1315792297 143 dbSNP
rs193128665 148 dbSNP
rs1381366100 156 dbSNP
rs116644216 158 dbSNP
rs562522275 163 dbSNP
rs1438207419 168 dbSNP
rs1029056323 175 dbSNP
rs1341533735 178 dbSNP
rs549687837 181 dbSNP
rs1300491966 184 dbSNP
rs1438983848 191 dbSNP
rs1183733021 194 dbSNP
rs188128877 217 dbSNP
rs1386556601 224 dbSNP
rs1365564809 233 dbSNP
rs377063890 234 dbSNP
rs1166048827 236 dbSNP
rs1410905912 251 dbSNP
rs996285817 254 dbSNP
rs1398799725 261 dbSNP
rs1446678607 262 dbSNP
rs1337545379 282 dbSNP
rs1385091797 285 dbSNP
rs935700541 289 dbSNP
rs1406635726 297 dbSNP
rs1242624723 310 dbSNP
rs183297961 312 dbSNP
rs1043635392 317 dbSNP
rs1216162815 318 dbSNP
rs1010449120 321 dbSNP
rs1166978603 324 dbSNP
rs1204229271 325 dbSNP
rs1054241 328 dbSNP
rs1459610661 339 dbSNP
rs190988948 354 dbSNP
rs912770603 371 dbSNP
rs986933319 376 dbSNP
rs954094454 378 dbSNP
rs376288645 379 dbSNP
rs1421927347 395 dbSNP
rs1465369919 400 dbSNP
rs1337976569 403 dbSNP
rs369858955 411 dbSNP
rs1394405163 412 dbSNP
rs1333569057 418 dbSNP
rs1339019413 425 dbSNP
rs1433154178 427 dbSNP
rs544759739 428 dbSNP
rs962770995 433 dbSNP
rs931068679 435 dbSNP
rs919720585 438 dbSNP
rs972987857 442 dbSNP
rs1054249 445 dbSNP
rs575224218 446 dbSNP
rs1190579384 454 dbSNP
rs912511246 457 dbSNP
rs971304678 460 dbSNP
rs1024109389 462 dbSNP
rs371706109 464 dbSNP
rs1385773289 467 dbSNP
rs894205151 468 dbSNP
rs1054236601 471 dbSNP
rs1000259753 473 dbSNP
rs749283655 474 dbSNP
rs1405371352 477 dbSNP
rs56343720 490 dbSNP
rs73910805 506 dbSNP
rs1329328626 512 dbSNP
rs1021760619 523 dbSNP
rs1261167934 527 dbSNP
rs1352234608 546 dbSNP
rs1213761692 547 dbSNP
rs1043031867 548 dbSNP
rs1284917880 554 dbSNP
rs1490405262 558 dbSNP
rs945593803 561 dbSNP
rs768527807 582 dbSNP
rs1439156250 586 dbSNP
rs912824225 587 dbSNP
rs1364834852 589 dbSNP
rs1051177211 591 dbSNP
rs1327681208 599 dbSNP
rs367727383 614 dbSNP
rs1003140720 615 dbSNP
rs1425518910 620 dbSNP
rs1304797478 625 dbSNP
rs932840325 626 dbSNP
rs1385953674 628 dbSNP
rs574343809 635 dbSNP
rs921334863 640 dbSNP
rs749252533 646 dbSNP
rs963029938 651 dbSNP
rs775443233 652 dbSNP
rs1359795976 655 dbSNP
rs1192862205 658 dbSNP
rs1263259278 670 dbSNP
rs1487724130 671 dbSNP
rs1479648825 672 dbSNP
rs781248055 677 dbSNP
rs757265194 682 dbSNP
rs983195367 683 dbSNP
rs1458234855 689 dbSNP
rs376887007 690 dbSNP
rs1445241825 696 dbSNP
rs1024243785 701 dbSNP
rs1366887315 706 dbSNP
rs1457244691 715 dbSNP
rs991305093 717 dbSNP
rs958559145 718 dbSNP
rs1221293147 726 dbSNP
rs570756159 733 dbSNP
rs566936720 736 dbSNP
rs13223 739 dbSNP
rs539521682 744 dbSNP
rs1008531900 745 dbSNP
rs1401792131 746 dbSNP
rs1334287136 758 dbSNP
rs1252236327 761 dbSNP
rs1468911963 763 dbSNP
rs4240 775 dbSNP
rs1238038530 776 dbSNP
rs1178045378 780 dbSNP
rs1417046969 798 dbSNP
rs974723045 801 dbSNP
rs1407224938 807 dbSNP
rs968765099 820 dbSNP
rs115053009 821 dbSNP
rs1374589637 832 dbSNP
rs932812641 835 dbSNP
rs988982501 835 dbSNP
rs1169907082 836 dbSNP
rs900037021 838 dbSNP
rs531508036 840 dbSNP
rs956376073 848 dbSNP
rs567595150 868 dbSNP
rs941418513 869 dbSNP
rs1054373 879 dbSNP
rs982756197 881 dbSNP
rs1297190536 884 dbSNP
rs1212742196 889 dbSNP
rs1320457622 892 dbSNP
rs995212172 893 dbSNP
rs371594409 894 dbSNP
rs1258014185 895 dbSNP
rs898227603 897 dbSNP
rs950052746 898 dbSNP
rs577873731 901 dbSNP
rs1482929934 902 dbSNP
rs1312351847 905 dbSNP
rs890928353 906 dbSNP
rs1265550283 907 dbSNP
rs1476738361 908 dbSNP
rs1192632804 909 dbSNP
rs1379491019 919 dbSNP
rs779443946 920 dbSNP
rs1451403750 924 dbSNP
rs958786428 925 dbSNP
rs1159197419 926 dbSNP
rs1337906836 928 dbSNP
rs1398582958 930 dbSNP
rs1277937852 934 dbSNP
rs1346769670 935 dbSNP
rs1032808852 941 dbSNP
rs979010972 942 dbSNP
rs1181869937 947 dbSNP
rs1288480154 949 dbSNP
rs560065349 950 dbSNP
rs932535335 972 dbSNP
rs1269322876 975 dbSNP
rs545145084 984 dbSNP
rs372397951 985 dbSNP
rs1020472380 988 dbSNP
rs1424313260 995 dbSNP
rs1008500622 998 dbSNP
rs1419182749 1000 dbSNP
rs1159898204 1010 dbSNP
rs1183775876 1016 dbSNP
rs1303311481 1017 dbSNP
rs1485099807 1017 dbSNP
rs1323310276 1019 dbSNP
rs34186121 1020 dbSNP
rs1367482387 1021 dbSNP
rs1224457287 1034 dbSNP
rs1217789091 1035 dbSNP
rs1216164004 1038 dbSNP
rs1292697406 1038 dbSNP
rs201972124 1038 dbSNP
rs371485291 1038 dbSNP
rs878986202 1038 dbSNP
rs370469953 1041 dbSNP
rs890153285 1042 dbSNP
rs1290177506 1049 dbSNP
rs1163855235 1052 dbSNP
rs1029865463 1053 dbSNP
rs1321742922 1057 dbSNP
rs974711681 1059 dbSNP
rs149600588 1071 dbSNP
rs6705631 1072 dbSNP
rs1038505390 1083 dbSNP
rs112304487 1089 dbSNP
rs1374780128 1090 dbSNP
rs1298655738 1092 dbSNP
rs566490259 1096 dbSNP
rs1363691897 1110 dbSNP
rs1316030854 1115 dbSNP
rs1162798835 1125 dbSNP
rs756208189 1127 dbSNP
rs1226445433 1132 dbSNP
rs950024960 1136 dbSNP
rs1288863468 1140 dbSNP
rs1307792456 1142 dbSNP
rs1200469399 1144 dbSNP
rs917297054 1155 dbSNP
rs991492847 1156 dbSNP
rs937241064 1168 dbSNP
rs1238890530 1173 dbSNP
rs1471596131 1175 dbSNP
rs573547814 1183 dbSNP
rs978596051 1185 dbSNP
rs1427019361 1193 dbSNP
rs1262735912 1194 dbSNP
rs1398690049 1200 dbSNP
rs1446187374 1203 dbSNP
rs1194895640 1210 dbSNP
rs970296233 1215 dbSNP
rs1446088712 1223 dbSNP
rs1489461520 1233 dbSNP
rs765753782 1234 dbSNP
rs1220195194 1253 dbSNP
rs912975106 1255 dbSNP
rs1317199753 1257 dbSNP
rs1209721158 1259 dbSNP
rs185397777 1261 dbSNP
rs995155973 1262 dbSNP
rs1266760572 1266 dbSNP
rs573745176 1267 dbSNP
rs552563209 1268 dbSNP
rs556060832 1277 dbSNP
rs1015276094 1281 dbSNP
rs1278417132 1284 dbSNP
rs1220263103 1285 dbSNP
rs755536430 1286 dbSNP
rs1173303060 1289 dbSNP
rs116128429 1291 dbSNP
rs1302474433 1295 dbSNP
rs573407897 1306 dbSNP
rs1341325995 1310 dbSNP
rs558036495 1324 dbSNP
rs1401664314 1329 dbSNP
rs774089723 1332 dbSNP
rs539557643 1334 dbSNP
rs1339833587 1336 dbSNP
rs754328742 1339 dbSNP
rs1392774908 1342 dbSNP
rs763842407 1346 dbSNP
rs996255430 1347 dbSNP
rs1460498780 1356 dbSNP
rs1199354243 1358 dbSNP
rs374226207 1359 dbSNP
rs568965887 1360 dbSNP
rs1261475393 1368 dbSNP
rs1423239173 1370 dbSNP
rs555321294 1376 dbSNP
rs371368039 1378 dbSNP
rs1379838194 1381 dbSNP
rs1477104269 1382 dbSNP
rs537585862 1389 dbSNP
rs914518518 1397 dbSNP
rs115413519 1399 dbSNP
rs1421745373 1400 dbSNP
rs570018055 1409 dbSNP
rs1047178118 1410 dbSNP
rs928746282 1414 dbSNP
rs139248985 1419 dbSNP
rs1329248528 1421 dbSNP
rs1456894068 1422 dbSNP
rs72763554 1423 dbSNP
rs1200067499 1443 dbSNP
rs539598307 1445 dbSNP
rs974295417 1446 dbSNP
rs146290599 1451 dbSNP
rs551560679 1452 dbSNP
rs1210775745 1453 dbSNP
rs1270153588 1454 dbSNP
rs1450377876 1455 dbSNP
rs566385003 1466 dbSNP
rs1389763560 1469 dbSNP
rs1399587076 1482 dbSNP
rs1003915601 1499 dbSNP
rs1043395597 1502 dbSNP
rs1029390784 1503 dbSNP
rs1404184384 1504 dbSNP
rs76461332 1508 dbSNP
rs1478548891 1527 dbSNP
rs899653131 1534 dbSNP
rs1180238537 1535 dbSNP
rs544308849 1538 dbSNP
rs987273056 1544 dbSNP
rs954430352 1553 dbSNP
rs1011206754 1572 dbSNP
rs921700875 1578 dbSNP
rs1246058935 1579 dbSNP
rs1267599565 1587 dbSNP
rs1053528442 1588 dbSNP
rs974415263 1590 dbSNP
rs1179955222 1592 dbSNP
rs182139635 1593 dbSNP
rs1176826327 1602 dbSNP
rs1237858153 1605 dbSNP
rs191167247 1606 dbSNP
rs540935357 1607 dbSNP
rs1366502831 1608 dbSNP
rs1457169496 1609 dbSNP
rs1346797592 1610 dbSNP
rs756956543 1613 dbSNP
rs777610651 1614 dbSNP
rs1025785673 1635 dbSNP
rs916041287 1636 dbSNP
rs1397420354 1648 dbSNP
rs1310060695 1649 dbSNP
rs866719578 1654 dbSNP
rs1339097288 1662 dbSNP
rs974274407 1667 dbSNP
rs186432341 1674 dbSNP
rs1449054565 1676 dbSNP
rs895880202 1679 dbSNP
rs1380921888 1682 dbSNP
rs1055913931 1684 dbSNP
rs1196895094 1690 dbSNP
rs908832696 1690 dbSNP
rs1001531041 1695 dbSNP
rs904560423 1696 dbSNP
rs1404718933 1700 dbSNP
rs1157356409 1712 dbSNP
rs1043063708 1723 dbSNP
rs1194088390 1724 dbSNP
rs1425759174 1730 dbSNP
rs1029303323 1731 dbSNP
rs1169787312 1736 dbSNP
rs1359248636 1737 dbSNP
rs1419682992 1738 dbSNP
rs996513504 1738 dbSNP
rs1381466073 1741 dbSNP
rs963774054 1743 dbSNP
rs1442215314 1746 dbSNP
rs945920423 1749 dbSNP
rs913163462 1754 dbSNP
rs1279222415 1758 dbSNP
rs1343011588 1761 dbSNP
rs1236554354 1763 dbSNP
rs557929882 1766 dbSNP
rs1295422652 1771 dbSNP
rs1312871776 1784 dbSNP
rs1187759181 1791 dbSNP
rs1212283205 1793 dbSNP
rs1254536113 1795 dbSNP
rs1485459789 1800 dbSNP
rs80007470 1801 dbSNP
rs575426839 1803 dbSNP
rs1259328736 1820 dbSNP
rs749731137 1821 dbSNP
rs921672028 1824 dbSNP
rs1434443390 1828 dbSNP
rs1173321338 1829 dbSNP
rs1374537610 1836 dbSNP
rs1354377263 1849 dbSNP
rs1288053484 1851 dbSNP
rs557070543 1854 dbSNP
rs780706188 1855 dbSNP
rs1398488867 1860 dbSNP
rs1283827046 1866 dbSNP
rs908832596 1867 dbSNP
rs1288830183 1872 dbSNP
rs983149146 1876 dbSNP
rs1052394604 1878 dbSNP
rs113352216 1884 dbSNP
rs1025921175 1893 dbSNP
rs1347156377 1899 dbSNP
rs992978026 1901 dbSNP
rs1288364762 1908 dbSNP
rs72763553 1923 dbSNP
rs1045762635 1926 dbSNP
rs553060141 1933 dbSNP
rs534103888 1940 dbSNP
rs6709664 1941 dbSNP
rs1393964421 1942 dbSNP
rs1439714533 1947 dbSNP
rs1160111779 1948 dbSNP
rs1378056950 1951 dbSNP
rs1399362698 1952 dbSNP
rs1158817515 1962 dbSNP
rs1351041704 1963 dbSNP
rs904613785 1970 dbSNP
rs774122497 1971 dbSNP
rs1439224248 1972 dbSNP
rs1038940832 1984 dbSNP
rs1370366477 1985 dbSNP
rs1022015792 1989 dbSNP
rs1010211155 1996 dbSNP
rs891692606 2001 dbSNP
rs551699341 2014 dbSNP
rs933145631 2017 dbSNP
rs1412356781 2026 dbSNP
rs983025065 2027 dbSNP
rs1323223241 2030 dbSNP
rs1219299458 2034 dbSNP
rs1163491858 2036 dbSNP
rs181733116 2040 dbSNP
rs757394993 2042 dbSNP
rs1471354713 2045 dbSNP
rs922237444 2045 dbSNP
rs1182011970 2046 dbSNP
rs975082834 2070 dbSNP
rs1407382309 2071 dbSNP
rs1022069511 2072 dbSNP
rs963764237 2072 dbSNP
rs371181950 2073 dbSNP
rs1473614592 2078 dbSNP
rs1370956289 2079 dbSNP
rs377533152 2080 dbSNP
rs1441760470 2081 dbSNP
rs12139 2086 dbSNP
rs1284946409 2087 dbSNP
rs1381103319 2089 dbSNP
rs550715563 2090 dbSNP
rs116722754 2092 dbSNP
rs115439389 2094 dbSNP
rs386642325 2095 dbSNP
rs1255610230 2108 dbSNP
rs1436665809 2109 dbSNP
rs983499037 2121 dbSNP
rs928980129 2123 dbSNP
rs190276708 2128 dbSNP
rs866502386 2129 dbSNP
rs1012959871 2132 dbSNP
rs753517205 2137 dbSNP
rs1218431509 2146 dbSNP
rs145170005 2148 dbSNP
rs1034896215 2149 dbSNP
rs1335139946 2152 dbSNP
rs941454255 2154 dbSNP
rs980308281 2155 dbSNP
rs1412757558 2158 dbSNP
rs1292443373 2159 dbSNP
rs969183979 2163 dbSNP
rs1220407649 2164 dbSNP
rs1021732743 2170 dbSNP
rs1010177059 2186 dbSNP
rs1338212287 2193 dbSNP
rs1200496437 2194 dbSNP
rs564477336 2204 dbSNP
rs891829550 2208 dbSNP
rs1323694721 2214 dbSNP
rs1047685278 2215 dbSNP
rs78945130 2225 dbSNP
rs997350936 2229 dbSNP
rs529607925 2231 dbSNP
rs900426230 2240 dbSNP
rs575464040 2244 dbSNP
rs751756110 2254 dbSNP
rs922897407 2264 dbSNP
rs1421055573 2265 dbSNP
rs1488790918 2266 dbSNP
rs1196499537 2269 dbSNP
rs1039253368 2270 dbSNP
rs1475149488 2273 dbSNP
rs563514697 2284 dbSNP
rs1427600284 2286 dbSNP
rs975032110 2289 dbSNP
rs941894763 2290 dbSNP
rs540576085 2301 dbSNP
rs1312438376 2302 dbSNP
rs1360956191 2306 dbSNP
rs942400613 2314 dbSNP
rs1316177066 2317 dbSNP
rs542326748 2317 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' auuagguacgugugUCCUCCa 5'
                        |||||| 
Target 5' --------------AGGAGGa 3'
1 - 7
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000252804.4 | 3UTR | AGGAGGAGCUCAAGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
348 hsa-miR-660-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059151 TXNIP thioredoxin interacting protein 2 2
MIRT294324 ZNF264 zinc finger protein 264 2 2
MIRT306043 SKIL SKI like proto-oncogene 2 4
MIRT392841 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT444084 C12orf73 chromosome 12 open reading frame 73 2 2
MIRT458774 CES2 carboxylesterase 2 2 2
MIRT460273 SLC26A2 solute carrier family 26 member 2 2 2
MIRT462675 HMOX1 heme oxygenase 1 2 4
MIRT473711 MAPK1 mitogen-activated protein kinase 1 2 6
MIRT478539 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT483234 FAM13C family with sequence similarity 13 member C 2 4
MIRT486255 BCORL1 BCL6 corepressor like 1 2 2
MIRT501951 MAT2A methionine adenosyltransferase 2A 2 10
MIRT513043 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT513249 FBXO17 F-box protein 17 2 2
MIRT526940 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT528176 C6orf47 chromosome 6 open reading frame 47 2 2
MIRT531525 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT532746 CMTM6 CKLF like MARVEL transmembrane domain containing 6 2 2
MIRT534241 SLC23A1 solute carrier family 23 member 1 2 2
MIRT538198 DBN1 drebrin 1 2 2
MIRT539305 AMOTL1 angiomotin like 1 2 2
MIRT539567 CNKSR3 CNKSR family member 3 2 4
MIRT540043 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540232 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540251 RGS17 regulator of G protein signaling 17 2 2
MIRT540878 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT543484 RXRA retinoid X receptor alpha 2 2
MIRT551435 F2 coagulation factor II, thrombin 2 2
MIRT553925 STK11IP serine/threonine kinase 11 interacting protein 2 2
MIRT556312 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT556943 ING1 inhibitor of growth family member 1 2 2
MIRT569883 EFEMP2 EGF containing fibulin like extracellular matrix protein 2 2 2
MIRT571849 NRBF2 nuclear receptor binding factor 2 2 2
MIRT572420 VWA5A von Willebrand factor A domain containing 5A 2 2
MIRT572495 BTN2A2 butyrophilin subfamily 2 member A2 2 2
MIRT572564 AFF1 AF4/FMR2 family member 1 2 2
MIRT572883 CHST15 carbohydrate sulfotransferase 15 2 2
MIRT574988 Slc38a5 solute carrier family 38, member 5 2 4
MIRT575264 Timp3 tissue inhibitor of metalloproteinase 3 2 2
MIRT608476 RRP36 ribosomal RNA processing 36 2 4
MIRT608529 TMOD3 tropomodulin 3 2 2
MIRT608578 RNF149 ring finger protein 149 2 2
MIRT608615 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT608679 STPG1 sperm tail PG-rich repeat containing 1 2 2
MIRT608727 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2 2
MIRT609575 CATSPER4 cation channel sperm associated 4 2 2
MIRT609710 TMEM132C transmembrane protein 132C 2 2
MIRT609858 DAZAP2 DAZ associated protein 2 2 2
MIRT610262 LRRC47 leucine rich repeat containing 47 2 2
MIRT610349 AGTRAP angiotensin II receptor associated protein 2 2
MIRT610729 PEA15 phosphoprotein enriched in astrocytes 15 2 4
MIRT610803 KLK2 kallikrein related peptidase 2 2 2
MIRT610968 MAFK MAF bZIP transcription factor K 2 2
MIRT611117 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 2 2
MIRT611600 JAKMIP3 Janus kinase and microtubule interacting protein 3 2 4
MIRT612211 TMEM109 transmembrane protein 109 2 2
MIRT612248 MICALL1 MICAL like 1 2 2
MIRT613252 CAV1 caveolin 1 2 4
MIRT613323 ARID3A AT-rich interaction domain 3A 2 4
MIRT613514 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT613605 TP53 tumor protein p53 2 2
MIRT613632 ARHGAP35 Rho GTPase activating protein 35 2 2
MIRT613809 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT614835 PRKCA protein kinase C alpha 2 2
MIRT614985 GIPC1 GIPC PDZ domain containing family member 1 2 2
MIRT615320 MLXIPL MLX interacting protein like 2 2
MIRT615504 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT615529 SPANXN5 SPANX family member N5 2 2
MIRT615610 SPANXN1 SPANX family member N1 2 2
MIRT615755 C6 complement C6 2 2
MIRT615952 SORD sorbitol dehydrogenase 2 2
MIRT616284 HMGB1 high mobility group box 1 2 2
MIRT616626 KCNJ11 potassium voltage-gated channel subfamily J member 11 2 4
MIRT616882 DGCR14 ess-2 splicing factor homolog 2 2
MIRT616994 COL19A1 collagen type XIX alpha 1 chain 2 2
MIRT617080 SPIB Spi-B transcription factor 2 2
MIRT617345 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617712 RUSC2 RUN and SH3 domain containing 2 2 2
MIRT618102 PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 2 2
MIRT618493 DENND5B DENN domain containing 5B 2 4
MIRT618756 SLC38A5 solute carrier family 38 member 5 2 5
MIRT619928 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT620028 NFAM1 NFAT activating protein with ITAM motif 1 2 2
MIRT620087 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 2
MIRT620209 VN1R1 vomeronasal 1 receptor 1 2 2
MIRT620557 C10orf10 chromosome 10 open reading frame 10 2 4
MIRT620770 CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) 2 2
MIRT620784 IL10RB interleukin 10 receptor subunit beta 2 2
MIRT620895 ANO7 anoctamin 7 2 2
MIRT621284 PIWIL1 piwi like RNA-mediated gene silencing 1 2 2
MIRT622594 PRRG4 proline rich and Gla domain 4 2 2
MIRT623273 MED28 mediator complex subunit 28 2 2
MIRT624247 VSIG2 V-set and immunoglobulin domain containing 2 2 2
MIRT624298 COMMD2 COMM domain containing 2 2 2
MIRT624526 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT624567 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT624692 AR androgen receptor 2 2
MIRT624767 AKR1D1 aldo-keto reductase family 1 member D1 2 2
MIRT624829 ACO1 aconitase 1 2 2
MIRT625159 ZCCHC8 zinc finger CCHC-type containing 8 2 4
MIRT625261 ZNF566 zinc finger protein 566 2 2
MIRT625388 ZNF716 zinc finger protein 716 2 2
MIRT625827 FBXO42 F-box protein 42 2 2
MIRT625837 NXPE2 neurexophilin and PC-esterase domain family member 2 2 2
MIRT626021 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626052 PDE4C phosphodiesterase 4C 2 2
MIRT626354 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT626778 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 2
MIRT627050 HOXA13 homeobox A13 2 2
MIRT627274 XIAP X-linked inhibitor of apoptosis 2 2
MIRT627310 WDR31 WD repeat domain 31 2 2
MIRT627916 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT630557 CCDC107 coiled-coil domain containing 107 2 2
MIRT630775 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT632083 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT633138 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT633711 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT634361 RNF157 ring finger protein 157 2 2
MIRT635739 IFNAR1 interferon alpha and beta receptor subunit 1 2 2
MIRT636963 APTX aprataxin 2 2
MIRT637373 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT637815 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT637911 FAM153B family with sequence similarity 153 member B 2 2
MIRT638474 PANK3 pantothenate kinase 3 2 2
MIRT638633 GSR glutathione-disulfide reductase 2 4
MIRT639493 TSPAN1 tetraspanin 1 2 2
MIRT639773 GPR45 G protein-coupled receptor 45 2 2
MIRT639781 RAX retina and anterior neural fold homeobox 2 2
MIRT639915 SLIT1 slit guidance ligand 1 2 2
MIRT640055 MCL1 MCL1, BCL2 family apoptosis regulator 2 4
MIRT640108 DUOX2 dual oxidase 2 2 2
MIRT640402 ZNF785 zinc finger protein 785 2 2
MIRT640555 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT640751 ZBTB26 zinc finger and BTB domain containing 26 2 2
MIRT640765 GLO1 glyoxalase I 2 2
MIRT640915 RAB13 RAB13, member RAS oncogene family 2 2
MIRT641521 CREBBP CREB binding protein 2 2
MIRT641533 SNW1 SNW domain containing 1 2 2
MIRT641692 SPCS1 signal peptidase complex subunit 1 2 2
MIRT641745 MACROD2 MACRO domain containing 2 2 2
MIRT641866 STOML1 stomatin like 1 2 2
MIRT641951 RNF115 ring finger protein 115 2 2
MIRT642205 SMAGP small cell adhesion glycoprotein 2 2
MIRT642420 CILP2 cartilage intermediate layer protein 2 2 2
MIRT643028 LETM2 leucine zipper and EF-hand containing transmembrane protein 2 2 2
MIRT643406 PAX1 paired box 1 2 2
MIRT643500 ZNF195 zinc finger protein 195 2 2
MIRT643754 LEFTY2 left-right determination factor 2 2 2
MIRT643898 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT644036 CENPM centromere protein M 2 2
MIRT644200 LAT2 linker for activation of T-cells family member 2 2 2
MIRT644228 ADD1 adducin 1 2 2
MIRT644690 GPR55 G protein-coupled receptor 55 2 2
MIRT645128 HES2 hes family bHLH transcription factor 2 2 2
MIRT645347 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT645897 ATP2B3 ATPase plasma membrane Ca2+ transporting 3 2 2
MIRT645905 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT646049 NPR1 natriuretic peptide receptor 1 2 2
MIRT646137 C1orf147 chromosome 1 open reading frame 147 2 2
MIRT646219 DUSP10 dual specificity phosphatase 10 2 2
MIRT646385 SLC22A6 solute carrier family 22 member 6 2 2
MIRT646739 FADS1 fatty acid desaturase 1 2 2
MIRT646877 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT647109 GNL3L G protein nucleolar 3 like 2 2
MIRT647523 PPIE peptidylprolyl isomerase E 2 2
MIRT647553 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT647755 NBPF3 NBPF member 3 2 2
MIRT648075 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT648225 TM4SF20 transmembrane 4 L six family member 20 2 2
MIRT648441 MYOZ3 myozenin 3 2 2
MIRT648823 ZNF689 zinc finger protein 689 2 2
MIRT649229 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT649237 FEM1A fem-1 homolog A 2 2
MIRT649249 TRIM65 tripartite motif containing 65 2 2
MIRT649459 WDR70 WD repeat domain 70 2 2
MIRT649637 RASA4 RAS p21 protein activator 4 2 2
MIRT650745 FKTN fukutin 2 2
MIRT651041 ZNF652 zinc finger protein 652 2 2
MIRT651754 VEGFA vascular endothelial growth factor A 2 2
MIRT651799 UST uronyl 2-sulfotransferase 2 2
MIRT652562 TLX1 T-cell leukemia homeobox 1 2 2
MIRT652776 TENM3 teneurin transmembrane protein 3 2 2
MIRT652939 SYNGR1 synaptogyrin 1 2 2
MIRT653006 STXBP5L syntaxin binding protein 5 like 2 2
MIRT653030 STX1B syntaxin 1B 2 2
MIRT653279 SNAP29 synaptosome associated protein 29 2 2
MIRT654057 S1PR1 sphingosine-1-phosphate receptor 1 2 2
MIRT654329 RBM33 RNA binding motif protein 33 2 2
MIRT654650 PTAFR platelet activating factor receptor 2 2
MIRT656577 LSM10 LSM10, U7 small nuclear RNA associated 2 2
MIRT656595 LSAMP limbic system-associated membrane protein 2 2
MIRT656646 LRIG1 leucine rich repeats and immunoglobulin like domains 1 2 2
MIRT656739 LMBR1L limb development membrane protein 1 like 2 2
MIRT656903 KIAA1958 KIAA1958 2 2
MIRT657392 HM13 histocompatibility minor 13 2 2
MIRT657528 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT657611 GRID1 glutamate ionotropic receptor delta type subunit 1 2 2
MIRT657668 GPR26 G protein-coupled receptor 26 2 2
MIRT657689 GPR155 G protein-coupled receptor 155 2 2
MIRT657818 GJD3 gap junction protein delta 3 2 2
MIRT658410 FAM208A family with sequence similarity 208 member A 2 2
MIRT658955 DNMT3A DNA methyltransferase 3 alpha 2 2
MIRT659425 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT659499 CISD3 CDGSH iron sulfur domain 3 2 2
MIRT659994 C2CD2L C2CD2 like 2 2
MIRT660215 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660493 ARRDC3 arrestin domain containing 3 2 2
MIRT660761 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT660827 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT661576 EPHX2 epoxide hydrolase 2 2 2
MIRT661711 MTO1 mitochondrial tRNA translation optimization 1 2 4
MIRT661826 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT662123 APOL6 apolipoprotein L6 2 2
MIRT662254 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT662314 ADM2 adrenomedullin 2 2 2
MIRT662341 MYLK3 myosin light chain kinase 3 2 2
MIRT662453 SEMA5A semaphorin 5A 2 2
MIRT662746 LRRC3C leucine rich repeat containing 3C 2 2
MIRT662901 GJB1 gap junction protein beta 1 2 2
MIRT663018 KIAA1586 KIAA1586 2 2
MIRT663102 THEM4 thioesterase superfamily member 4 2 2
MIRT663574 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT664125 C4orf32 family with sequence similarity 241 member A 2 2
MIRT664560 SORBS2 sorbin and SH3 domain containing 2 2 2
MIRT665589 TUBD1 tubulin delta 1 2 2
MIRT666464 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT666527 RNF170 ring finger protein 170 2 2
MIRT666874 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 2 2
MIRT667055 PARVA parvin alpha 2 2
MIRT667282 NAV1 neuron navigator 1 2 2
MIRT667928 IGLON5 IgLON family member 5 2 2
MIRT667957 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 2 2
MIRT668336 FKBP5 FK506 binding protein 5 2 2
MIRT668718 DIP2C disco interacting protein 2 homolog C 2 2
MIRT669310 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669688 ABLIM1 actin binding LIM protein 1 2 2
MIRT671524 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT672112 TLCD2 TLC domain containing 2 2 4
MIRT672186 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT672702 ZNF677 zinc finger protein 677 2 2
MIRT673473 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT673617 HPSE heparanase 2 2
MIRT673763 ZNF333 zinc finger protein 333 2 2
MIRT674817 FAM229B family with sequence similarity 229 member B 2 2
MIRT675304 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675404 SVOP SV2 related protein 2 2
MIRT676163 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676320 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT676347 PCCB propionyl-CoA carboxylase beta subunit 2 2
MIRT676526 RNF216 ring finger protein 216 2 2
MIRT676571 VSIG1 V-set and immunoglobulin domain containing 1 2 2
MIRT676588 RDH13 retinol dehydrogenase 13 2 2
MIRT676648 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676723 METTL14 methyltransferase like 14 2 2
MIRT676805 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT676813 SHROOM4 shroom family member 4 2 2
MIRT677204 MURC caveolae associated protein 4 2 2
MIRT677284 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677359 POC1A POC1 centriolar protein A 2 2
MIRT677516 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677530 OCIAD2 OCIA domain containing 2 2 2
MIRT677627 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT677669 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT678056 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT678132 METTL21A methyltransferase like 21A 2 2
MIRT678154 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678463 GLYAT glycine-N-acyltransferase 2 2
MIRT678614 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT678716 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT679161 ZDHHC15 zinc finger DHHC-type containing 15 2 2
MIRT679307 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679430 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT679499 ZNF106 zinc finger protein 106 2 2
MIRT679963 VTA1 vesicle trafficking 1 2 2
MIRT679983 E2F2 E2F transcription factor 2 2 2
MIRT680153 TOP3A DNA topoisomerase III alpha 2 2
MIRT680304 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT680330 LRRC58 leucine rich repeat containing 58 2 2
MIRT680401 OXA1L OXA1L, mitochondrial inner membrane protein 2 2
MIRT683911 PSMB9 proteasome subunit beta 9 2 2
MIRT684183 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684238 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT684284 CDK9 cyclin dependent kinase 9 2 2
MIRT685411 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686260 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT688250 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688327 FAM151B family with sequence similarity 151 member B 2 2
MIRT688747 CNDP1 carnosine dipeptidase 1 2 2
MIRT689040 ANGPTL3 angiopoietin like 3 2 2
MIRT692525 PARD3 par-3 family cell polarity regulator 2 2
MIRT692984 LGSN lengsin, lens protein with glutamine synthetase domain 2 2
MIRT699866 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT699877 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT700840 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT701538 NCKAP1 NCK associated protein 1 2 2
MIRT703683 FAM189B family with sequence similarity 189 member B 2 2
MIRT708555 SPA17 sperm autoantigenic protein 17 2 2
MIRT708579 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT708721 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT708984 CABP4 calcium binding protein 4 2 2
MIRT709195 SAPCD2 suppressor APC domain containing 2 2 2
MIRT709679 PCDH17 protocadherin 17 2 2
MIRT709962 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT710173 MTRF1L mitochondrial translational release factor 1 like 2 2
MIRT710329 STK40 serine/threonine kinase 40 2 2
MIRT710532 TMEM201 transmembrane protein 201 2 2
MIRT710628 ASB7 ankyrin repeat and SOCS box containing 7 2 2
MIRT711037 RNF187 ring finger protein 187 2 2
MIRT711227 RETSAT retinol saturase 2 2
MIRT711418 RAB3C RAB3C, member RAS oncogene family 2 2
MIRT711469 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT711636 PEBP1 phosphatidylethanolamine binding protein 1 2 2
MIRT711658 RAB21 RAB21, member RAS oncogene family 2 2
MIRT711704 GMPR guanosine monophosphate reductase 2 2
MIRT711924 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT712061 ZBTB34 zinc finger and BTB domain containing 34 2 2
MIRT712094 TMEM218 transmembrane protein 218 2 2
MIRT712541 CYB561D1 cytochrome b561 family member D1 2 2
MIRT714480 TBL2 transducin beta like 2 2 2
MIRT716323 SIGLEC10 sialic acid binding Ig like lectin 10 2 2
MIRT716750 C19orf24 chromosome 19 open reading frame 24 2 2
MIRT717014 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT717162 SHB SH2 domain containing adaptor protein B 2 2
MIRT717369 EDN2 endothelin 2 2 2
MIRT717481 PDE4DIP phosphodiesterase 4D interacting protein 2 2
MIRT718080 CLIC5 chloride intracellular channel 5 2 2
MIRT718545 PIGQ phosphatidylinositol glycan anchor biosynthesis class Q 2 2
MIRT718835 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT718864 LRSAM1 leucine rich repeat and sterile alpha motif containing 1 2 2
MIRT719149 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT719687 ALDH1L2 aldehyde dehydrogenase 1 family member L2 2 2
MIRT719780 ZNF236 zinc finger protein 236 2 2
MIRT719859 KLF2 Kruppel like factor 2 2 2
MIRT720496 TMEM178B transmembrane protein 178B 2 2
MIRT720804 NUDT5 nudix hydrolase 5 2 2
MIRT720944 PPP1R3E protein phosphatase 1 regulatory subunit 3E 2 2
MIRT721344 LIF LIF, interleukin 6 family cytokine 2 2
MIRT721805 GRM1 glutamate metabotropic receptor 1 2 2
MIRT721924 LINGO2 leucine rich repeat and Ig domain containing 2 2 2
MIRT722429 HRNR hornerin 2 2
MIRT723971 GPR146 G protein-coupled receptor 146 2 2
MIRT724225 ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 2 2
MIRT724272 HMGCLL1 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 2 2
MIRT724659 PXDN peroxidasin 2 2
MIRT725282 OSTM1 osteopetrosis associated transmembrane protein 1 2 2
MIRT725434 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT725604 CAPN6 calpain 6 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-660 4-hydroxynonenal NULL 5283344 Microarray human leukemic HL-60 cell 19022373 2009 up-regulated
miR-660 Vorinostat (SAHA) approved 5311 Microarray A549 human non-small cell lung cancer cells 19513533 2009 up-regulated
miR-660 Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-660 Vitamin D3 approved 5280795 Quantitative real-time PCR Plasma 22594500 2012 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-660 Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-mir-660 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-660 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-660 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-mir-660 Cisplatin 5460033 NSC119875 approved resistant cell line (KYSE)
hsa-mir-660 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-mir-660 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-660 Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)
hsa-miR-660-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-660-3p Sorafenib 216239 NSC747971 approved sensitive Low Hepatocellular Carcinoma cell line (HepG2)
hsa-miR-660-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-660-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-660-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-660-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-660-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

Error report submission