pre-miRNA Information
pre-miRNA hsa-mir-6769b   
Genomic Coordinates chr1: 206474803 - 206474864
Description Homo sapiens miR-6769b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6769b-3p
Sequence 42| CCCUCUCUGUCCCACCCAUAG |62
Evidence Experimental
Experiments Meta-analysis
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26671848 9 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs555627187 3 dbSNP
rs782102173 4 dbSNP
rs201952639 7 dbSNP
rs782001154 9 dbSNP
rs1488064450 15 dbSNP
rs782111367 16 dbSNP
rs370859899 18 dbSNP
rs1305197911 19 dbSNP
Putative Targets

Gene Information
Gene Symbol ZNF391   
Synonyms dJ153G14.3
Description zinc finger protein 391
Transcript NM_001076781   
Expression
Putative miRNA Targets on ZNF391
3'UTR of ZNF391
(miRNA target sites are highlighted)
>ZNF391|NM_001076781|3'UTR
   1 TATCTGAGCTTTTATTAATGTTAGCATAAGAACACATATACCTAACCTCCCACCACTGAAATATATATATTTCAAGTATA
  81 TATATACTTGTTCTAATTTTCTTTTATTAGATACCTATACCCGTTTTAAGCTTTCATTCGTTCTTTCCATCCATCTATCC
 161 TTCTTTCGTCTCCCCTCCCTTCTTCCCTCCTTCCCTCCTTCCTACTTTTTCTCCCTCTCCCTGTTCTTTCTTTCTCTTTT
 241 CTCAAATAAGTTCACAATAAAACAAAGGGATGACTCAAAAAACATAACATATGAAATCTAATATTCTGAAGGGCTCCAAC
 321 TTTAGAGTATAAAGCTATCTGACACCTTGTAGTTTCTCTGCTAATCTATTCCTTCAAGCGTGGGTCCCCGAACCACCAGG
 401 TTCTCCTCTGTTTTCTAACCACATCAGCCCCTGCACATGAAGAGAAAATCCTGTGTGTGTGTCTTCATACTTGCTGGCTC
 481 TAGTACCAGAAGAGAGGGATCTGGCTTCAGAGCAGGACTGAAAACTTCTCACCAGTCTGGGGATAATAGTGTTGAGGCAA
 561 ATTCATTCTCTTGACTTGCAAAAACAGATTTTTCTCATCTTCCTCCTTCTCTCACCTTTTTTGCAGTAGCATTTTTCCTC
 641 AAAGTACAACTCATTTTTTTACTAACGCCTAACTAATCCTAGTGTTATTTTATCATATTTTTACCAAGAATGTTCTAAAA
 721 ATCTTGGAGACGTTCCTCCATGATCTTGGGAAAAAAAGTTGCCAAATGCTGTGCTGTTTTTTTTGTTTGTTTTTAATTTT
 801 CTTTCATTTACAGATTTCATGAAACTTATATTCTGTGGCTTTGACCCTCACCAATCTTGGAAGATTGATCTCTCAAGGAC
 881 AAACCCAGTGCCTATTTCTCAGTCCTTTTTCTACTTGACATTTGCAGAATTGGCACTTTTTGCCACTGTTATGCCTTAAA
 961 TCTTGAGCTTCTTTCAGGATCCATGATTCTGTGCTGATCTACACTTTTCCTACCTCTCAGCATTTCTTTGATTGTCAATG
1041 ATCAGCTCTGTGATTTGGGGCAAGGGTTAGGCCAGAATTATCTCATTTTATCAAGTTATAAAACTTGAGGTAGTGCAACT
1121 AGATTATACACTTCTTGAAGACAGAAATCTTGGTTTGTTTGTTGTTTTATTTTTGAGAGAAGGTCTTGCTGTGTTGCCCA
1201 GGCTGGAGTGCAATGGCACAATCATAGCTCACTGTAGCCTTGAACTTCTGGGCTCCTGCCACAGCCTCCTGAGTAGCTAG
1281 GGCTGCAAGTGTGTACCACCACACCCACAATTTTAAAGTTTTTTTGTGGAGACAGGATCTCACTATATTGGCAAGGCTGG
1361 CCTCCATCTCCTGAACTCAAACAATTCTCCCACCTCGGCTTCCGAAAACACTGACATTACAGGTGTGAGCCACCACACCT
1441 GCCAGAAATCTTGTTTTTGATTGATATAAAACATCACAAAGTACTGAGTAGACACTAAATGCTCTGTAATTATTGCTCAC
1521 TGATTCCTCTTTATCTGTAATCAATCAACTTGACTTTATTTGATATGGATTAATAATTGATTTCTTTCTCTCTTTCTACT
1601 GCTGCTTCCAAGTTCTTGGTACCTTGTGCCTAGATTACTAAATTGATCACTGTTGACTCACTACCATTATCTAGCTCCTT
1681 ACTAAACTACTACTTTGTTAAAAAAAAATAGTCGTTTCCCAGTGACCTCTGCCCCAAATGTAAACTTCTTTAACCTAAAG
1761 GTCTTTCATAGTTTGATCTACTTACTTACTTCCTTTCTCTTCTCAAAGATAATACATGCGGGCAGGCCTGTTTTGTCCCT
1841 ACTATACCCTCTTCTCACACTTTTCTTCTTTTCAAACTGTTCCTTGGCACTTCTACATGTCCTACTTTCTTCGTTGTATT
1921 CCAGAAACCCTATCCACCCTTTTTTAAAGGCCATGCTCATATCCTGGCTCTGTGACACTTTCAGTCCCCTGCCTTCTTAG
2001 AAATCCTTTGTAGTGATGGTTTGCATTATTCTCCTGTATTAGACACCTTCTTTACTGTTTTCTGGTTCTTTCACAAGTAC
2081 TTTTTTACATAAGCTGTTTTGAAGTTGTAAATCATCCTAAATCTTTTATAAGCCTCATATAATACATAGTACAATGCCAG
2161 CCTGGACTCTAGTTTTAATCTAAATACATAGGGTTTAATTTAGCAGCATAATCTTTTTAGTCTTTTGAATGATGAGGTAA
2241 CCTCATAGGTATTTTGGCCCATTTTGTTTTTCCTTGAATTACATATATAACTGACTATTTAGACTGACTCCTTTAGATCT
2321 CCTGGGATGCTGACCTCTTGGCTTTCCAATTCATGAGACTATTGTAAAGAATAAGTGAGTTCATTCATGTAAAGTAGTAA
2401 AACAGTGCCTGACAAAAGTAAATGCTCAATAAATTCTAATTGTTATGATTCTAGTGATTC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gauACC--CACCCUG----UCUCUCCc 5'
             |||   | | ||    ||||||| 
Target 5' tgcTGGCTCTAGTACCAGAAGAGAGGg 3'
472 - 498 142.00 -19.70
2
miRNA  3' gauaccCACCCUGUCUCUCCc 5'
                ||||   ||| ||| 
Target 5' ttttttGTGG---AGACAGGa 3'
1320 - 1337 116.00 -13.10
3
miRNA  3' gauacccacccugUCUCUCCc 5'
                       ||||| | 
Target 5' tgttttatttttgAGAGAAGg 3'
1163 - 1183 108.00 -8.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19518290 78 COSMIC
COSN28902035 122 COSMIC
COSN7869117 322 COSMIC
COSN7869118 407 COSMIC
COSN24200320 542 COSMIC
COSN2158146 693 COSMIC
COSN29693734 785 COSMIC
COSN2158147 901 COSMIC
COSN29923900 934 COSMIC
COSN1330455 1186 COSMIC
COSN25166186 1295 COSMIC
COSN23173249 1385 COSMIC
COSN22301212 1442 COSMIC
COSN21073108 1515 COSMIC
COSN1330456 1628 COSMIC
COSN2158148 1670 COSMIC
COSN25735677 2078 COSMIC
COSN23563407 2443 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs919534843 11 dbSNP
rs776434483 15 dbSNP
rs950979492 21 dbSNP
rs1365050248 24 dbSNP
rs369902235 27 dbSNP
rs1224617156 32 dbSNP
rs1271367754 36 dbSNP
rs1339454702 37 dbSNP
rs765383408 47 dbSNP
rs993025583 51 dbSNP
rs1162198336 56 dbSNP
rs959744030 57 dbSNP
rs1374665679 65 dbSNP
rs917435752 66 dbSNP
rs992494895 68 dbSNP
rs948842154 76 dbSNP
rs1260794922 77 dbSNP
rs1191755095 78 dbSNP
rs1044503506 85 dbSNP
rs565725902 87 dbSNP
rs1198840997 91 dbSNP
rs981413347 107 dbSNP
rs936035823 115 dbSNP
rs1317654237 118 dbSNP
rs936842655 119 dbSNP
rs1197547257 121 dbSNP
rs1234952000 123 dbSNP
rs368129554 124 dbSNP
rs1478956898 136 dbSNP
rs1384498119 137 dbSNP
rs879194744 141 dbSNP
rs554992921 146 dbSNP
rs933383419 149 dbSNP
rs750798506 153 dbSNP
rs776940678 158 dbSNP
rs1422606759 160 dbSNP
rs1479122980 161 dbSNP
rs761748111 163 dbSNP
rs1051600745 168 dbSNP
rs765369912 169 dbSNP
rs1016605611 173 dbSNP
rs536187243 176 dbSNP
rs1457759316 179 dbSNP
rs1256543874 182 dbSNP
rs899049969 183 dbSNP
rs1401609218 190 dbSNP
rs1026102919 198 dbSNP
rs1403875864 202 dbSNP
rs1322954564 205 dbSNP
rs1378446917 215 dbSNP
rs1331800121 217 dbSNP
rs1309404956 220 dbSNP
rs1439180662 223 dbSNP
rs1276889901 224 dbSNP
rs766936215 224 dbSNP
rs750828031 227 dbSNP
rs1219648605 228 dbSNP
rs1017314877 229 dbSNP
rs992524535 244 dbSNP
rs1452850151 249 dbSNP
rs1382239928 251 dbSNP
rs557781541 258 dbSNP
rs1439177004 277 dbSNP
rs963151640 277 dbSNP
rs1236813755 285 dbSNP
rs969714212 292 dbSNP
rs1289938050 293 dbSNP
rs978417162 296 dbSNP
rs1452868529 301 dbSNP
rs1355494352 304 dbSNP
rs1286101218 305 dbSNP
rs994950076 308 dbSNP
rs925529344 314 dbSNP
rs1285828688 315 dbSNP
rs145596433 322 dbSNP
rs1339634258 324 dbSNP
rs1332016526 327 dbSNP
rs950407487 335 dbSNP
rs758968809 337 dbSNP
rs188759760 346 dbSNP
rs1195565222 351 dbSNP
rs575706969 361 dbSNP
rs557661025 369 dbSNP
rs1405924430 380 dbSNP
rs980261195 381 dbSNP
rs546392018 384 dbSNP
rs543169003 391 dbSNP
rs1391490687 398 dbSNP
rs781677893 406 dbSNP
rs1263379068 409 dbSNP
rs943374894 420 dbSNP
rs755425312 424 dbSNP
rs913243052 426 dbSNP
rs1360444986 429 dbSNP
rs1355642977 430 dbSNP
rs1401208464 439 dbSNP
rs559631452 444 dbSNP
rs76502563 445 dbSNP
rs79479646 446 dbSNP
rs1282362733 452 dbSNP
rs1280467977 458 dbSNP
rs1401556710 475 dbSNP
rs13207689 479 dbSNP
rs1399671703 481 dbSNP
rs748985461 485 dbSNP
rs181365629 486 dbSNP
rs1167075265 487 dbSNP
rs895636671 493 dbSNP
rs1014019209 503 dbSNP
rs147717857 512 dbSNP
rs1478977477 517 dbSNP
rs745444675 519 dbSNP
rs1213837383 533 dbSNP
rs1192436647 543 dbSNP
rs530778658 543 dbSNP
rs1484724572 545 dbSNP
rs1038862659 550 dbSNP
rs549685674 552 dbSNP
rs1488566788 553 dbSNP
rs1287586953 565 dbSNP
rs1220428345 571 dbSNP
rs1318298266 575 dbSNP
rs1277383247 579 dbSNP
rs1218233313 586 dbSNP
rs1218763494 595 dbSNP
rs1253778898 604 dbSNP
rs1437208287 606 dbSNP
rs536894418 609 dbSNP
rs1324415636 614 dbSNP
rs1467676782 615 dbSNP
rs898940000 618 dbSNP
rs1170500468 626 dbSNP
rs1000308850 645 dbSNP
rs10946913 648 dbSNP
rs1477386431 649 dbSNP
rs1187044083 651 dbSNP
rs1200431005 653 dbSNP
rs1369283200 654 dbSNP
rs149171692 657 dbSNP
rs1156918132 661 dbSNP
rs10946914 667 dbSNP
rs377522015 670 dbSNP
rs117964992 674 dbSNP
rs1024600059 677 dbSNP
rs1366955573 680 dbSNP
rs1301399304 694 dbSNP
rs1449650564 695 dbSNP
rs1400457397 698 dbSNP
rs1401580456 698 dbSNP
rs970296279 699 dbSNP
rs1460745399 704 dbSNP
rs914131715 706 dbSNP
rs980290987 713 dbSNP
rs1413605365 715 dbSNP
rs1392707993 718 dbSNP
rs551428754 722 dbSNP
rs1439776106 723 dbSNP
rs957741282 729 dbSNP
rs1237429664 732 dbSNP
rs988926954 733 dbSNP
rs1334332589 741 dbSNP
rs1211054193 742 dbSNP
rs987601469 749 dbSNP
rs1278466518 751 dbSNP
rs571286806 752 dbSNP
rs1377776442 764 dbSNP
rs537001481 772 dbSNP
rs549713130 777 dbSNP
rs1303852074 778 dbSNP
rs1465230143 782 dbSNP
rs1353844553 786 dbSNP
rs943466305 790 dbSNP
rs149308532 795 dbSNP
rs1038143357 806 dbSNP
rs920595600 807 dbSNP
rs986755478 811 dbSNP
rs185251428 812 dbSNP
rs1156797996 820 dbSNP
rs6456778 821 dbSNP
rs1200827541 826 dbSNP
rs1047657648 830 dbSNP
rs1484577889 837 dbSNP
rs895709475 841 dbSNP
rs1462807487 847 dbSNP
rs768516006 850 dbSNP
rs1354469221 856 dbSNP
rs574269774 863 dbSNP
rs1237601590 866 dbSNP
rs1440425260 867 dbSNP
rs1039335617 869 dbSNP
rs1376438928 873 dbSNP
rs899017262 877 dbSNP
rs1237504620 883 dbSNP
rs116349397 893 dbSNP
rs905641916 895 dbSNP
rs1047481865 901 dbSNP
rs370907274 904 dbSNP
rs886184301 906 dbSNP
rs762098658 910 dbSNP
rs1033113849 914 dbSNP
rs1400266661 931 dbSNP
rs1359322490 936 dbSNP
rs1408818801 937 dbSNP
rs1368928811 945 dbSNP
rs1164026828 948 dbSNP
rs191177431 949 dbSNP
rs573292295 953 dbSNP
rs1425560095 955 dbSNP
rs545115762 960 dbSNP
rs1444079096 961 dbSNP
rs1013971266 962 dbSNP
rs1229579016 970 dbSNP
rs183843204 971 dbSNP
rs1376928851 972 dbSNP
rs1448371050 976 dbSNP
rs1299021398 977 dbSNP
rs1009875297 978 dbSNP
rs73738772 980 dbSNP
rs1203396827 984 dbSNP
rs1233942396 989 dbSNP
rs1257510703 990 dbSNP
rs1315872961 992 dbSNP
rs544156354 992 dbSNP
rs1489513550 994 dbSNP
rs1196928262 995 dbSNP
rs1257677603 996 dbSNP
rs1266495066 1000 dbSNP
rs375945607 1009 dbSNP
rs1001805881 1021 dbSNP
rs1280542756 1022 dbSNP
rs1179017604 1025 dbSNP
rs143281320 1027 dbSNP
rs1293018847 1028 dbSNP
rs1390870659 1030 dbSNP
rs1433095442 1030 dbSNP
rs987680890 1036 dbSNP
rs1200251294 1039 dbSNP
rs1402184610 1044 dbSNP
rs1171209636 1045 dbSNP
rs1477375767 1065 dbSNP
rs910714891 1067 dbSNP
rs148315993 1078 dbSNP
rs1464414432 1083 dbSNP
rs1169446896 1085 dbSNP
rs973495632 1107 dbSNP
rs1400582234 1108 dbSNP
rs1467567129 1125 dbSNP
rs1260388616 1126 dbSNP
rs1199604783 1150 dbSNP
rs1339168796 1153 dbSNP
rs989350599 1157 dbSNP
rs929336385 1158 dbSNP
rs1331158891 1159 dbSNP
rs983382258 1161 dbSNP
rs1438619351 1178 dbSNP
rs1291267948 1186 dbSNP
rs1331970172 1203 dbSNP
rs1366338515 1209 dbSNP
rs1387237533 1229 dbSNP
rs1020402091 1231 dbSNP
rs955453123 1236 dbSNP
rs1166338480 1239 dbSNP
rs6456779 1248 dbSNP
rs1226015481 1255 dbSNP
rs911235777 1256 dbSNP
rs942682300 1257 dbSNP
rs559483389 1259 dbSNP
rs1240522009 1274 dbSNP
rs528268410 1287 dbSNP
rs974690734 1290 dbSNP
rs766953451 1295 dbSNP
rs1338074308 1296 dbSNP
rs551576623 1297 dbSNP
rs1437580652 1307 dbSNP
rs930529567 1309 dbSNP
rs1201807832 1311 dbSNP
rs541014231 1314 dbSNP
rs1279167824 1319 dbSNP
rs9468118 1329 dbSNP
rs1355256920 1333 dbSNP
rs1054223352 1334 dbSNP
rs1206954814 1339 dbSNP
rs886214045 1346 dbSNP
rs140456536 1359 dbSNP
rs533822956 1384 dbSNP
rs905544162 1385 dbSNP
rs1376216162 1391 dbSNP
rs1001566301 1397 dbSNP
rs1029332371 1404 dbSNP
rs1054719573 1422 dbSNP
rs1193390985 1446 dbSNP
rs1470126468 1452 dbSNP
rs548909674 1461 dbSNP
rs1424862855 1476 dbSNP
rs893370879 1479 dbSNP
rs550594886 1480 dbSNP
rs1020391040 1485 dbSNP
rs187388487 1493 dbSNP
rs866920049 1494 dbSNP
rs1018215978 1502 dbSNP
rs1457979909 1517 dbSNP
rs964926282 1525 dbSNP
rs1018275676 1527 dbSNP
rs973951335 1527 dbSNP
rs371893088 1530 dbSNP
rs950799729 1538 dbSNP
rs559465522 1545 dbSNP
rs983449155 1546 dbSNP
rs1358538287 1547 dbSNP
rs1399387521 1548 dbSNP
rs376963652 1548 dbSNP
rs1362528235 1550 dbSNP
rs774143171 1555 dbSNP
rs964085565 1562 dbSNP
rs1400197413 1577 dbSNP
rs1406352468 1577 dbSNP
rs1278587944 1585 dbSNP
rs949994465 1587 dbSNP
rs748273172 1591 dbSNP
rs1216511098 1593 dbSNP
rs980059726 1601 dbSNP
rs750214929 1602 dbSNP
rs191411902 1605 dbSNP
rs920564556 1606 dbSNP
rs1294129149 1613 dbSNP
rs935855155 1619 dbSNP
rs535849787 1629 dbSNP
rs183742729 1633 dbSNP
rs1333863499 1640 dbSNP
rs1264297447 1644 dbSNP
rs983333967 1656 dbSNP
rs759924867 1660 dbSNP
rs1342536614 1662 dbSNP
rs553359064 1665 dbSNP
rs1054656090 1667 dbSNP
rs1487066701 1670 dbSNP
rs567074529 1676 dbSNP
rs1326071303 1678 dbSNP
rs945772832 1679 dbSNP
rs186910147 1682 dbSNP
rs1163305634 1694 dbSNP
rs201653829 1700 dbSNP
rs34885201 1700 dbSNP
rs949839895 1710 dbSNP
rs564580134 1711 dbSNP
rs558632897 1714 dbSNP
rs575713637 1715 dbSNP
rs575322134 1728 dbSNP
rs753073893 1736 dbSNP
rs1017869305 1741 dbSNP
rs1273929390 1743 dbSNP
rs1214246665 1755 dbSNP
rs900719372 1757 dbSNP
rs1442277164 1758 dbSNP
rs1370817382 1762 dbSNP
rs937056597 1764 dbSNP
rs995019448 1770 dbSNP
rs756924542 1771 dbSNP
rs1407922071 1775 dbSNP
rs1028229316 1778 dbSNP
rs1378716628 1779 dbSNP
rs1453281343 1780 dbSNP
rs1247065526 1781 dbSNP
rs3734575 1786 dbSNP
rs983481754 1791 dbSNP
rs1232135705 1794 dbSNP
rs1024319933 1797 dbSNP
rs749899863 1801 dbSNP
rs971381935 1814 dbSNP
rs1351637850 1816 dbSNP
rs554927343 1820 dbSNP
rs980473361 1821 dbSNP
rs1301825851 1827 dbSNP
rs1449718359 1838 dbSNP
rs757931444 1839 dbSNP
rs1239994157 1842 dbSNP
rs957512251 1843 dbSNP
rs573886013 1846 dbSNP
rs1360476551 1847 dbSNP
rs913058902 1848 dbSNP
rs1433520229 1858 dbSNP
rs1392768811 1860 dbSNP
rs1208453254 1867 dbSNP
rs891298076 1876 dbSNP
rs1419658665 1884 dbSNP
rs1008316479 1885 dbSNP
rs533354293 1888 dbSNP
rs753315189 1898 dbSNP
rs369504978 1905 dbSNP
rs995546587 1913 dbSNP
rs1278362969 1914 dbSNP
rs754474473 1920 dbSNP
rs1317980916 1923 dbSNP
rs1306932007 1940 dbSNP
rs942351867 1944 dbSNP
rs1381839876 1946 dbSNP
rs1039738675 1954 dbSNP
rs1413840038 1957 dbSNP
rs3734574 1968 dbSNP
rs150390035 1969 dbSNP
rs1156860828 1977 dbSNP
rs1049253393 1984 dbSNP
rs577217816 1986 dbSNP
rs1188909469 1988 dbSNP
rs1412756970 1993 dbSNP
rs540926431 1994 dbSNP
rs1475043239 1996 dbSNP
rs565020608 2016 dbSNP
rs1206918775 2019 dbSNP
rs1175076036 2020 dbSNP
rs1260608654 2027 dbSNP
rs1214328697 2028 dbSNP
rs981263025 2029 dbSNP
rs770035516 2037 dbSNP
rs1004976665 2063 dbSNP
rs1232294894 2069 dbSNP
rs1359576389 2088 dbSNP
rs927067203 2094 dbSNP
rs1453600994 2118 dbSNP
rs1353107302 2135 dbSNP
rs1297292791 2140 dbSNP
rs1338970024 2150 dbSNP
rs530603713 2151 dbSNP
rs1383653862 2157 dbSNP
rs1024349421 2158 dbSNP
rs562371931 2161 dbSNP
rs1280279425 2164 dbSNP
rs1054156446 2170 dbSNP
rs763078925 2191 dbSNP
rs1376146204 2192 dbSNP
rs866773423 2194 dbSNP
rs540677626 2197 dbSNP
rs1415892912 2201 dbSNP
rs1195640797 2205 dbSNP
rs550342681 2211 dbSNP
rs1429169014 2213 dbSNP
rs1261191152 2214 dbSNP
rs914235333 2219 dbSNP
rs1001580246 2225 dbSNP
rs1470271048 2230 dbSNP
rs567272108 2233 dbSNP
rs1205124372 2250 dbSNP
rs1333171983 2261 dbSNP
rs1034758417 2279 dbSNP
rs191600679 2283 dbSNP
rs990456681 2284 dbSNP
rs1456884355 2286 dbSNP
rs1178713178 2288 dbSNP
rs913131148 2290 dbSNP
rs1476988161 2295 dbSNP
rs1442472625 2297 dbSNP
rs1371571655 2303 dbSNP
rs1325169575 2304 dbSNP
rs1459640212 2312 dbSNP
rs142663436 2314 dbSNP
rs1169851241 2326 dbSNP
rs891370292 2336 dbSNP
rs1425547033 2339 dbSNP
rs547273610 2354 dbSNP
rs944249883 2363 dbSNP
rs1168329229 2365 dbSNP
rs1039831563 2389 dbSNP
rs899944168 2392 dbSNP
rs566780782 2397 dbSNP
rs1455650597 2406 dbSNP
rs1398369374 2414 dbSNP
rs996011331 2416 dbSNP
rs1027049352 2426 dbSNP
rs573639992 2430 dbSNP
rs775620210 2432 dbSNP
rs146008738 2439 dbSNP
rs887108040 2443 dbSNP
rs774934883 2446 dbSNP
rs1004181554 2454 dbSNP
rs1434896247 2456 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gauacccacccuguCUCUCCc 5'
                        |||||| 
Target 5' --------------GAGAGGg 3'
1 - 7
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000244576.4 | 3UTR | GAGAGGGAUCUGGCUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
209 hsa-miR-6769b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT181753 UHMK1 U2AF homology motif kinase 1 2 2
MIRT287119 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT395372 CDC42EP4 CDC42 effector protein 4 2 4
MIRT472533 NACC1 nucleus accumbens associated 1 2 4
MIRT472611 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT482405 ADRB1 adrenoceptor beta 1 2 10
MIRT492330 SETD1B SET domain containing 1B 2 2
MIRT499238 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT512274 ARHGDIA Rho GDP dissociation inhibitor alpha 2 6
MIRT534548 RUNX1 runt related transcription factor 1 2 2
MIRT535374 PEX5L peroxisomal biogenesis factor 5 like 2 2
MIRT535424 PDZD8 PDZ domain containing 8 2 2
MIRT539329 AHSA2 activator of HSP90 ATPase homolog 2 2 4
MIRT569350 EFHC1 EF-hand domain containing 1 2 2
MIRT576116 Klf6 Kruppel-like factor 6 2 2
MIRT607241 LINS lines homolog 1 2 4
MIRT607364 ASAH2 N-acylsphingosine amidohydrolase 2 2 4
MIRT609572 CATSPER4 cation channel sperm associated 4 2 2
MIRT610045 SERPINA3 serpin family A member 3 2 2
MIRT610284 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT610302 KLHL21 kelch like family member 21 2 2
MIRT610393 FOXE1 forkhead box E1 2 2
MIRT610432 ASAH2B N-acylsphingosine amidohydrolase 2B 2 2
MIRT610510 BARHL2 BarH like homeobox 2 2 2
MIRT611818 FCRL4 Fc receptor like 4 2 2
MIRT612755 MYOCD myocardin 2 2
MIRT613698 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT613917 POU3F1 POU class 3 homeobox 1 2 2
MIRT615153 URGCP-MRPS24 URGCP-MRPS24 readthrough 2 2
MIRT615201 CLUAP1 clusterin associated protein 1 2 2
MIRT615338 ABCC12 ATP binding cassette subfamily C member 12 2 2
MIRT616706 UBXN2A UBX domain protein 2A 2 2
MIRT617186 GOSR2 golgi SNAP receptor complex member 2 2 4
MIRT617526 SORCS2 sortilin related VPS10 domain containing receptor 2 2 2
MIRT617596 NUDT5 nudix hydrolase 5 2 4
MIRT617763 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT618613 SHOX short stature homeobox 2 2
MIRT619301 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619515 TXLNB taxilin beta 2 2
MIRT619925 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT619942 C8orf33 chromosome 8 open reading frame 33 2 2
MIRT620025 NFAM1 NFAT activating protein with ITAM motif 1 2 2
MIRT620554 C10orf10 chromosome 10 open reading frame 10 2 4
MIRT620752 CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) 2 2
MIRT621798 TMEM233 transmembrane protein 233 2 2
MIRT621843 TGFBR3 transforming growth factor beta receptor 3 2 2
MIRT622693 PLSCR1 phospholipid scramblase 1 2 2
MIRT622733 PITPNM3 PITPNM family member 3 2 2
MIRT623004 ONECUT3 one cut homeobox 3 2 2
MIRT623211 MTFR1L mitochondrial fission regulator 1 like 2 2
MIRT623771 GPR37L1 G protein-coupled receptor 37 like 1 2 2
MIRT624119 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT624150 DIAPH1 diaphanous related formin 1 2 2
MIRT624443 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT624855 ABI2 abl interactor 2 2 2
MIRT625311 SHISA6 shisa family member 6 2 2
MIRT625741 MTSS1 MTSS1, I-BAR domain containing 2 2
MIRT626292 ZNF85 zinc finger protein 85 2 2
MIRT627400 TMEM170A transmembrane protein 170A 2 2
MIRT627464 SYNRG synergin gamma 2 2
MIRT627913 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT636508 GDAP1L1 ganglioside induced differentiation associated protein 1 like 1 2 2
MIRT636910 KIAA0408 KIAA0408 2 2
MIRT637302 ACTN2 actinin alpha 2 2 2
MIRT638230 SOGA3 SOGA family member 3 2 2
MIRT639880 STC1 stanniocalcin 1 2 2
MIRT639999 PHF21B PHD finger protein 21B 2 2
MIRT640149 CEP104 centrosomal protein 104 2 2
MIRT640699 SKI SKI proto-oncogene 2 2
MIRT640911 RAB13 RAB13, member RAS oncogene family 2 2
MIRT641518 CREBBP CREB binding protein 2 2
MIRT641990 OXSR1 oxidative stress responsive 1 2 2
MIRT642635 EPPIN epididymal peptidase inhibitor 2 2
MIRT642744 TDRD6 tudor domain containing 6 2 2
MIRT642759 SDHAF2 succinate dehydrogenase complex assembly factor 2 2 2
MIRT642787 CHCHD3 coiled-coil-helix-coiled-coil-helix domain containing 3 2 2
MIRT643054 EPPIN-WFDC6 EPPIN-WFDC6 readthrough 2 2
MIRT643104 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT643316 TMEM151B transmembrane protein 151B 2 2
MIRT643715 ITK IL2 inducible T-cell kinase 2 2
MIRT644087 A4GALT alpha 1,4-galactosyltransferase (P blood group) 2 2
MIRT644112 SEL1L3 SEL1L family member 3 2 2
MIRT644377 ZNF286A zinc finger protein 286A 2 2
MIRT644408 FRMD6 FERM domain containing 6 2 2
MIRT644684 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT644744 CCDC174 coiled-coil domain containing 174 2 2
MIRT644876 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT645417 FAM110A family with sequence similarity 110 member A 2 2
MIRT645928 PLXNA3 plexin A3 2 2
MIRT646181 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT646554 TMCC2 transmembrane and coiled-coil domain family 2 2 2
MIRT647235 OR6A2 olfactory receptor family 6 subfamily A member 2 2 2
MIRT647263 PTGDR2 prostaglandin D2 receptor 2 2 2
MIRT647660 FOXL1 forkhead box L1 2 2
MIRT648284 TRAPPC2L trafficking protein particle complex 2 like 2 2
MIRT648493 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT648963 TMEM45B transmembrane protein 45B 2 2
MIRT649511 RAB17 RAB17, member RAS oncogene family 2 2
MIRT650446 CPXM2 carboxypeptidase X, M14 family member 2 2 2
MIRT650712 KRT32 keratin 32 2 2
MIRT651069 ZNF518B zinc finger protein 518B 2 4
MIRT651090 ZNF516 zinc finger protein 516 2 2
MIRT651193 ZNF281 zinc finger protein 281 2 2
MIRT651330 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT651445 XKR4 XK related 4 2 2
MIRT651517 WNT4 Wnt family member 4 2 4
MIRT651694 VPS13D vacuolar protein sorting 13 homolog D 2 2
MIRT652173 TRIM66 tripartite motif containing 66 2 2
MIRT652432 TMEM239 transmembrane protein 239 2 2
MIRT652656 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT652707 THBS2 thrombospondin 2 2 2
MIRT652812 TBL2 transducin beta like 2 2 2
MIRT653350 SMG7 SMG7, nonsense mediated mRNA decay factor 2 2
MIRT653471 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 2
MIRT653658 SLC27A4 solute carrier family 27 member 4 2 2
MIRT654691 PSMB5 proteasome subunit beta 5 2 2
MIRT654735 PRLR prolactin receptor 2 2
MIRT654931 POLR3D RNA polymerase III subunit D 2 2
MIRT655209 PHAX phosphorylated adaptor for RNA export 2 2
MIRT655346 PCP4L1 Purkinje cell protein 4 like 1 2 2
MIRT655404 PANK1 pantothenate kinase 1 2 2
MIRT655482 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT655964 NDNF neuron derived neurotrophic factor 2 2
MIRT656017 MYPN myopalladin 2 2
MIRT656491 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT657151 ITGA1 integrin subunit alpha 1 2 2
MIRT657411 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT657608 GRID1 glutamate ionotropic receptor delta type subunit 1 2 2
MIRT658181 FBXO9 F-box protein 9 2 2
MIRT658932 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT659028 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659092 DENR density regulated re-initiation and release factor 2 2
MIRT659204 CYBB cytochrome b-245 beta chain 2 2
MIRT659718 CCDC93 coiled-coil domain containing 93 2 2
MIRT660185 BNC2 basonuclin 2 2 2
MIRT660805 AIFM2 apoptosis inducing factor, mitochondria associated 2 2 2
MIRT660900 ADCY6 adenylate cyclase 6 2 2
MIRT660925 ADAM19 ADAM metallopeptidase domain 19 2 2
MIRT661741 DTHD1 death domain containing 1 2 2
MIRT661998 EFTUD2 elongation factor Tu GTP binding domain containing 2 2 2
MIRT662639 PKHD1L1 PKHD1 like 1 2 2
MIRT664338 RAB8A RAB8A, member RAS oncogene family 2 2
MIRT666743 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT667070 PANK3 pantothenate kinase 3 2 2
MIRT667925 IGLON5 IgLON family member 5 2 2
MIRT668488 ETV3 ETS variant 3 2 2
MIRT668610 EHD4 EH domain containing 4 2 2
MIRT669419 ATP9A ATPase phospholipid transporting 9A (putative) 2 2
MIRT669652 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT674005 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT680447 SLCO5A1 solute carrier organic anion transporter family member 5A1 2 2
MIRT684326 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT685625 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT689978 ZNF185 zinc finger protein 185 with LIM domain 2 2
MIRT693962 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT698543 TFRC transferrin receptor 2 2
MIRT699982 RREB1 ras responsive element binding protein 1 2 2
MIRT702898 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT707383 VCAM1 vascular cell adhesion molecule 1 2 2
MIRT708312 CDH8 cadherin 8 2 2
MIRT708406 GRIN2A glutamate ionotropic receptor NMDA type subunit 2A 2 2
MIRT709299 LDLRAD4 low density lipoprotein receptor class A domain containing 4 2 2
MIRT710326 STK40 serine/threonine kinase 40 2 2
MIRT710729 C19orf68 zinc finger SWIM-type containing 9 2 2
MIRT710970 CMKLR1 chemerin chemokine-like receptor 1 2 2
MIRT711178 EMCN endomucin 2 2
MIRT711590 SETD1A SET domain containing 1A 2 2
MIRT711611 LHX5 LIM homeobox 5 2 2
MIRT711701 GMPR guanosine monophosphate reductase 2 2
MIRT711850 AMOTL2 angiomotin like 2 2 2
MIRT712358 NAT14 N-acetyltransferase 14 (putative) 2 2
MIRT712377 MTPN myotrophin 2 2
MIRT712469 KCNC3 potassium voltage-gated channel subfamily C member 3 2 2
MIRT712839 RHOA ras homolog family member A 2 2
MIRT713592 ANKMY1 ankyrin repeat and MYND domain containing 1 2 2
MIRT713982 ASIC4 acid sensing ion channel subunit family member 4 2 2
MIRT714534 ZBTB39 zinc finger and BTB domain containing 39 2 2
MIRT714570 GALNT10 polypeptide N-acetylgalactosaminyltransferase 10 2 2
MIRT714610 EXO5 exonuclease 5 2 2
MIRT714943 ZNF330 zinc finger protein 330 2 2
MIRT715132 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT716018 TMPRSS5 transmembrane protease, serine 5 2 2
MIRT716204 TYW3 tRNA-yW synthesizing protein 3 homolog 2 2
MIRT716674 PPP6R1 protein phosphatase 6 regulatory subunit 1 2 2
MIRT717366 EDN2 endothelin 2 2 2
MIRT718110 CRTC1 CREB regulated transcription coactivator 1 2 2
MIRT718502 GYS1 glycogen synthase 1 2 2
MIRT719146 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT719415 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT719986 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT720347 BACE2 beta-site APP-cleaving enzyme 2 2 2
MIRT720452 SLC16A5 solute carrier family 16 member 5 2 2
MIRT720493 TMEM178B transmembrane protein 178B 2 2
MIRT720666 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT721091 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT721334 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT721384 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721508 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT721827 POU6F1 POU class 6 homeobox 1 2 2
MIRT722136 TTLL11 tubulin tyrosine ligase like 11 2 2
MIRT723070 GGA1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 2 2
MIRT723115 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT723374 ZNF470 zinc finger protein 470 2 2
MIRT724446 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT724528 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT724643 PKDREJ polycystin family receptor for egg jelly 2 2
MIRT724711 CRAMP1L cramped chromatin regulator homolog 1 2 2
MIRT724750 ZNF391 zinc finger protein 391 2 2
MIRT724770 PSG4 pregnancy specific beta-1-glycoprotein 4 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6769b Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-6769b Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-miR-6769b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-6769b-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-6769b-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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