pre-miRNA Information
pre-miRNA hsa-mir-6509   
Genomic Coordinates chr7: 135206994 - 135207078
Description Homo sapiens miR-6509 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6509-3p
Sequence 52| UUCCACUGCCACUACCUAAUUU |73
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs778601614 1 dbSNP
rs754554776 3 dbSNP
rs767798995 3 dbSNP
rs145322812 4 dbSNP
rs773941257 5 dbSNP
rs768273593 9 dbSNP
rs984565062 12 dbSNP
rs748872915 13 dbSNP
rs774861125 14 dbSNP
rs13241975 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MSX2   
Synonyms CRS2, FPP, HOX8, MSH, PFM, PFM1
Description msh homeobox 2
Transcript NM_002449   
Expression
Putative miRNA Targets on MSX2
3'UTR of MSX2
(miRNA target sites are highlighted)
>MSX2|NM_002449|3'UTR
   1 GGAAGACCAGATCAATAGACTCCATGATGGATGCTTGTTTCAAAGGGTTTCCTCTCCCTCTCCACGAAGGCAGTACCAGC
  81 CAGTACTCCTGCTCTGCTAACCCTGCGTGCACCACCCTAAGCGGCTAGGCTGACAGGGCCACACGACATAGCTGAAATTT
 161 GTTCTGTAGGCGGAGGCACCAAGCCCTGTTTTCTTGGTGTAATCTTCCAGATGCCCCCTTTTCCTTTCACAAAGATTGGC
 241 TCTGATGGTTTTTATGTATAAATATATATATATAATAAAATATAATACATTTTTATACAGCAGACGTAAAAATTCAAATT
 321 ATTTTAAAAGGCAAAATTTATATACATATGTGCTTTTTTTCTATATCTCACCTTCCCAAAAGACACTGTGTAAGTCCATT
 401 TGTTGTATTTTCTTAAAGAGGGAGACAAATTATTTGCAAAATGTGCTAAAGTCAATGATTTTTACGGGATTATTGACTTC
 481 TGCTTATGGAAAACAAAGAAACAGACACAATGCACACAGAAAATATTAGATATGGAGAGATTATTCAAAGTGAAGGGGAC
 561 ACATCATATTTCTGCATTTTACTTGCATTAAAAGAAACCTCTTTATATACTACAGTTGTTCCTATCTCTCCCCCGCCCCC
 641 CACCGCCCCACCACACACATATTTTTAAAGTTTTTCCTTTTTTAAGAATATTTTTGTAAGACCAATACCTGGGATGAGAA
 721 GAATCCTGAGACTGCCTGGAGGTGAGGTAGAAAATTAGAAATACTTCCTAATTCTTCTCAAGGCTGTTGGTAACTTTATT
 801 TCAGATAATTGGAGAGTAAAATGTTAAAACCTGTTGAGAGGAATTGATGGTTTCTGAGAAATACTAGGTACATTCATCCT
 881 CACAGATTGCAAAGGTGATTTGGGTGGGGGTTTAGTAATTTTCTGCTTAAAAAATGAGTATCTTGTAACCATTACCTATA
 961 TGCTAAATATTCTTGAACAATTAGTAGATCCAGAAAGAAAAAAAAATATGCTTTCTCTGTGTGTGTACCTGTTGTATGTC
1041 CTAAACTTATTAGAAAATTTTATATACTTTTTTACATGTTGGGGGGCAGAAGGTAAAGCCATGTTTTGACTTGGTGAAAA
1121 TGGGATTGTCAAACAGCCCATTAAGTTCCCTGGTATTTCACCTTCCTGTCCATCTGTCCCCTCCCTCCGGTATACCTTTA
1201 TCCCTTTGAAAGGGTGCTTGTACAATTTGATATATTTTATTGAAGAGTTATCTCTTATTCTGAATTAAATTAAGCATTTG
1281 TTTTATTGCAGTAAAGTTTGTCCAAACTCACAATTAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuuaaUCCAUCA----CCGUCAccuu 5'
               ||| |||    | ||||    
Target 5' cacgaAGGCAGTACCAGCCAGTactc 3'
63 - 88 95.00 -6.61
2
miRNA  3' uuUAA----UCCAUCACCGUCACCUu 5'
            |||    ||||: |   :||||: 
Target 5' agATTGCAAAGGTGATTTGGGTGGGg 3'
884 - 909 94.00 -13.00
3
miRNA  3' uuUAAUCCA-UCA-CCGUCACCuu 5'
            ||| | |  || |||:| ||  
Target 5' aaATTTGTTCTGTAGGCGGAGGca 3'
155 - 178 92.00 -9.82
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
352839 47 ClinVar
352840 103 ClinVar
904118 107 ClinVar
904119 127 ClinVar
352841 145 ClinVar
904120 158 ClinVar
352842 173 ClinVar
904896 184 ClinVar
352843 258 ClinVar
352844 290 ClinVar
352845 307 ClinVar
352846 350 ClinVar
352847 364 ClinVar
906498 367 ClinVar
352848 417 ClinVar
907504 466 ClinVar
907505 467 ClinVar
352849 511 ClinVar
904177 513 ClinVar
904178 517 ClinVar
352850 527 ClinVar
352851 531 ClinVar
352852 602 ClinVar
904958 602 ClinVar
904959 636 ClinVar
906549 645 ClinVar
352853 648 ClinVar
352854 659 ClinVar
352855 724 ClinVar
352856 864 ClinVar
907565 879 ClinVar
352857 947 ClinVar
352858 998 ClinVar
352859 1008 ClinVar
904232 1051 ClinVar
904233 1065 ClinVar
352860 1081 ClinVar
352861 1097 ClinVar
352862 1126 ClinVar
352863 1147 ClinVar
905025 1162 ClinVar
352864 1177 ClinVar
906608 1179 ClinVar
906609 1190 ClinVar
907629 1207 ClinVar
907630 1234 ClinVar
352865 1250 ClinVar
352866 1313 ClinVar
COSN30534595 19 COSMIC
COSN5852335 29 COSMIC
COSN31541891 35 COSMIC
COSN30477836 46 COSMIC
COSN29896961 49 COSMIC
COSN30530456 69 COSMIC
COSN31498172 89 COSMIC
COSN30517151 144 COSMIC
COSN30110261 166 COSMIC
COSN9421142 530 COSMIC
COSN9421143 619 COSMIC
COSN28609684 697 COSMIC
COSN19212590 698 COSMIC
COSN30539427 935 COSMIC
COSN20102238 1007 COSMIC
COSN30040230 1007 COSMIC
COSN31583102 1057 COSMIC
COSN30544884 1063 COSMIC
COSN31539037 1074 COSMIC
COSN20102244 1087 COSMIC
COSN31603615 1233 COSMIC
COSN31488585 1255 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs780486877 1 dbSNP
rs368747209 6 dbSNP
rs1382360014 7 dbSNP
rs1404388920 8 dbSNP
rs768358565 9 dbSNP
rs775996170 14 dbSNP
rs372223571 16 dbSNP
rs1434190485 17 dbSNP
rs769830511 24 dbSNP
rs1349850612 31 dbSNP
rs773320207 33 dbSNP
rs3087540 35 dbSNP
rs763019404 44 dbSNP
rs1344566899 46 dbSNP
rs375964205 47 dbSNP
rs532365387 61 dbSNP
rs1417003338 63 dbSNP
rs550795412 66 dbSNP
rs1182325178 67 dbSNP
rs1479844572 73 dbSNP
rs369125868 76 dbSNP
rs1460469912 77 dbSNP
rs1160945523 78 dbSNP
rs925365300 84 dbSNP
rs1399332191 86 dbSNP
rs1392459339 87 dbSNP
rs1488729743 89 dbSNP
rs936783798 89 dbSNP
rs1055211653 93 dbSNP
rs1331552366 97 dbSNP
rs886060426 103 dbSNP
rs747163618 107 dbSNP
rs949566351 111 dbSNP
rs541008828 123 dbSNP
rs1294153243 124 dbSNP
rs775306704 125 dbSNP
rs1242791605 127 dbSNP
rs557598517 136 dbSNP
rs530005338 145 dbSNP
rs548607704 146 dbSNP
rs1028060554 149 dbSNP
rs17063878 158 dbSNP
rs777389065 163 dbSNP
rs3087539 167 dbSNP
rs1189719892 171 dbSNP
rs879720488 172 dbSNP
rs577291689 173 dbSNP
rs1257900558 180 dbSNP
rs1420803652 182 dbSNP
rs1326403638 183 dbSNP
rs771167296 184 dbSNP
rs3087537 187 dbSNP
rs1437844854 198 dbSNP
rs977994183 199 dbSNP
rs925313485 208 dbSNP
rs1451554182 214 dbSNP
rs1167869880 216 dbSNP
rs3087538 222 dbSNP
rs1369189067 227 dbSNP
rs958044978 228 dbSNP
rs991339965 233 dbSNP
rs1436978945 243 dbSNP
rs1166664877 248 dbSNP
rs1451189609 249 dbSNP
rs1182743736 254 dbSNP
rs1248412452 254 dbSNP
rs1460193343 257 dbSNP
rs187794452 258 dbSNP
rs1249634809 262 dbSNP
rs1338856341 262 dbSNP
rs1400980996 262 dbSNP
rs1375117804 267 dbSNP
rs563103519 269 dbSNP
rs1394476402 271 dbSNP
rs949600831 273 dbSNP
rs1046514950 275 dbSNP
rs908042396 276 dbSNP
rs1335814082 277 dbSNP
rs1338377803 277 dbSNP
rs1327123106 282 dbSNP
rs1226699149 289 dbSNP
rs886060427 290 dbSNP
rs940987565 297 dbSNP
rs1431620343 298 dbSNP
rs143672195 306 dbSNP
rs886060428 307 dbSNP
rs995156835 311 dbSNP
rs538476597 320 dbSNP
rs1049963220 321 dbSNP
rs1280742350 333 dbSNP
rs1437396811 333 dbSNP
rs1207367744 349 dbSNP
rs114567531 350 dbSNP
rs1291651011 351 dbSNP
rs1198391702 352 dbSNP
rs1008069703 353 dbSNP
rs1019491079 354 dbSNP
rs1285092658 354 dbSNP
rs1334798894 354 dbSNP
rs1285975045 361 dbSNP
rs376258231 364 dbSNP
rs1371126812 366 dbSNP
rs193163747 367 dbSNP
rs775783810 368 dbSNP
rs1403482848 372 dbSNP
rs1388920439 383 dbSNP
rs1032246357 387 dbSNP
rs1163621176 399 dbSNP
rs958292310 400 dbSNP
rs1410007640 402 dbSNP
rs990812307 403 dbSNP
rs1472977973 408 dbSNP
rs1220019725 415 dbSNP
rs1375247308 415 dbSNP
rs1453763642 415 dbSNP
rs10038500 417 dbSNP
rs1290862045 418 dbSNP
rs1204901170 427 dbSNP
rs970820151 432 dbSNP
rs1385872018 433 dbSNP
rs1229803731 444 dbSNP
rs1350590140 452 dbSNP
rs1282020744 454 dbSNP
rs1434303687 463 dbSNP
rs554165494 466 dbSNP
rs148083483 467 dbSNP
rs1362994428 471 dbSNP
rs1399867264 495 dbSNP
rs531338994 495 dbSNP
rs1236377594 499 dbSNP
rs1457912285 500 dbSNP
rs1428689553 501 dbSNP
rs1189541724 503 dbSNP
rs1304002693 505 dbSNP
rs540115605 509 dbSNP
rs1192966824 510 dbSNP
rs2381939 511 dbSNP
rs1270355712 516 dbSNP
rs532200136 527 dbSNP
rs886060429 531 dbSNP
rs1329427445 534 dbSNP
rs1277376258 540 dbSNP
rs528504366 543 dbSNP
rs1049368437 544 dbSNP
rs1347090225 548 dbSNP
rs1275399583 552 dbSNP
rs1429880935 558 dbSNP
rs1362784992 559 dbSNP
rs889439674 562 dbSNP
rs1008018922 563 dbSNP
rs143924110 564 dbSNP
rs1469383600 567 dbSNP
rs185029831 587 dbSNP
rs1174103424 588 dbSNP
rs902376595 592 dbSNP
rs189138878 599 dbSNP
rs886060430 602 dbSNP
rs753566277 610 dbSNP
rs1250369643 621 dbSNP
rs1394938178 621 dbSNP
rs1189599839 623 dbSNP
rs1431818038 628 dbSNP
rs1207540090 629 dbSNP
rs765805297 629 dbSNP
rs1443665520 630 dbSNP
rs1161719771 633 dbSNP
rs548570932 635 dbSNP
rs1023675969 636 dbSNP
rs192627117 636 dbSNP
rs1157097031 643 dbSNP
rs1299620842 644 dbSNP
rs970685736 645 dbSNP
rs766110807 646 dbSNP
rs1441676365 647 dbSNP
rs751312423 648 dbSNP
rs1366747715 651 dbSNP
rs1428452775 654 dbSNP
rs1014934128 656 dbSNP
rs10044147 659 dbSNP
rs1308868778 661 dbSNP
rs1412015982 663 dbSNP
rs973559425 684 dbSNP
rs184884082 689 dbSNP
rs1317181482 691 dbSNP
rs1227429947 694 dbSNP
rs1482060928 697 dbSNP
rs920850112 704 dbSNP
rs1336315846 705 dbSNP
rs1213714536 706 dbSNP
rs1246699386 710 dbSNP
rs932282943 713 dbSNP
rs1380148496 717 dbSNP
rs1287871155 718 dbSNP
rs1408050601 722 dbSNP
rs115604243 724 dbSNP
rs910912913 731 dbSNP
rs1424521977 732 dbSNP
rs1179362042 759 dbSNP
rs1348507110 759 dbSNP
rs943671386 768 dbSNP
rs188468287 782 dbSNP
rs180684930 805 dbSNP
rs935163472 812 dbSNP
rs1488077341 815 dbSNP
rs893627986 818 dbSNP
rs568830886 819 dbSNP
rs1223471108 825 dbSNP
rs1012190634 829 dbSNP
rs1267778848 834 dbSNP
rs1352423154 844 dbSNP
rs1023961787 848 dbSNP
rs1386772701 856 dbSNP
rs1420204989 860 dbSNP
rs886060431 864 dbSNP
rs1014966783 865 dbSNP
rs34342523 868 dbSNP
rs1388308668 869 dbSNP
rs535956934 876 dbSNP
rs554272174 879 dbSNP
rs572502901 880 dbSNP
rs973885796 881 dbSNP
rs1349292447 906 dbSNP
rs1432574018 910 dbSNP
rs1265150743 919 dbSNP
rs1192812475 923 dbSNP
rs1488698624 925 dbSNP
rs533584141 926 dbSNP
rs1247120593 928 dbSNP
rs1027859233 939 dbSNP
rs1331479617 946 dbSNP
rs886060432 947 dbSNP
rs953651230 960 dbSNP
rs1310998067 977 dbSNP
rs1304090129 981 dbSNP
rs1299769499 989 dbSNP
rs1373829549 990 dbSNP
rs1408925839 991 dbSNP
rs1286088215 994 dbSNP
rs986426928 997 dbSNP
rs1318872129 998 dbSNP
rs1398879830 998 dbSNP
rs397692104 998 dbSNP
rs1356963137 1000 dbSNP
rs912118050 1006 dbSNP
rs74292295 1008 dbSNP
rs1178159135 1009 dbSNP
rs1320492816 1010 dbSNP
rs1466458396 1018 dbSNP
rs1207270854 1020 dbSNP
rs1200048282 1043 dbSNP
rs1252363503 1050 dbSNP
rs184931219 1051 dbSNP
rs189444818 1065 dbSNP
rs1234606053 1071 dbSNP
rs1342065351 1076 dbSNP
rs1231035735 1081 dbSNP
rs145784193 1081 dbSNP
rs886060433 1081 dbSNP
rs1366333962 1083 dbSNP
rs935134780 1090 dbSNP
rs1395032854 1093 dbSNP
rs530984915 1097 dbSNP
rs572556594 1106 dbSNP
rs893669314 1109 dbSNP
rs947851952 1114 dbSNP
rs1411687633 1121 dbSNP
rs14459 1126 dbSNP
rs574716431 1127 dbSNP
rs1354982951 1132 dbSNP
rs1428940809 1134 dbSNP
rs1187119071 1136 dbSNP
rs2890848 1147 dbSNP
rs1376943163 1149 dbSNP
rs1258431661 1153 dbSNP
rs1003509816 1161 dbSNP
rs1036352249 1163 dbSNP
rs1273147016 1172 dbSNP
rs897825788 1175 dbSNP
rs2890849 1177 dbSNP
rs754477149 1178 dbSNP
rs182072112 1179 dbSNP
rs1215746291 1184 dbSNP
rs953583966 1185 dbSNP
rs1314312451 1188 dbSNP
rs1342055220 1189 dbSNP
rs146501739 1190 dbSNP
rs1282870355 1196 dbSNP
rs77229212 1207 dbSNP
rs1396946715 1214 dbSNP
rs373056463 1225 dbSNP
rs966250245 1226 dbSNP
rs977667563 1227 dbSNP
rs567135134 1231 dbSNP
rs756881447 1233 dbSNP
rs989259719 1234 dbSNP
rs1249645348 1236 dbSNP
rs1486899459 1240 dbSNP
rs543710932 1242 dbSNP
rs139249455 1250 dbSNP
rs143253235 1251 dbSNP
rs746242647 1252 dbSNP
rs1172220797 1253 dbSNP
rs1353867446 1256 dbSNP
rs767461937 1259 dbSNP
rs975877604 1260 dbSNP
rs1266873556 1263 dbSNP
rs568292848 1270 dbSNP
rs931870443 1276 dbSNP
rs1044844302 1290 dbSNP
rs1377677989 1297 dbSNP
rs1448763634 1298 dbSNP
rs927796339 1306 dbSNP
rs200120254 1308 dbSNP
rs886060434 1313 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000239243.6 | 3UTR | UGGAAACAAUACAGAACUGCUGUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-6509-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055374 PDCD4 programmed cell death 4 2 4
MIRT378341 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT444668 CDKL2 cyclin dependent kinase like 2 2 2
MIRT446953 CD248 CD248 molecule 2 2
MIRT460332 CAMK4 calcium/calmodulin dependent protein kinase IV 2 6
MIRT464078 VPS4A vacuolar protein sorting 4 homolog A 2 2
MIRT464586 UBN2 ubinuclein 2 2 2
MIRT468482 SESN3 sestrin 3 2 2
MIRT468962 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT475455 HSPA8 heat shock protein family A (Hsp70) member 8 2 2
MIRT482403 ADRB1 adrenoceptor beta 1 2 10
MIRT486992 ZFAND2B zinc finger AN1-type containing 2B 2 2
MIRT489397 TUBB2A tubulin beta 2A class IIa 2 2
MIRT526319 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526560 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT526732 ZNF138 zinc finger protein 138 2 8
MIRT531581 STXBP5L syntaxin binding protein 5 like 2 2
MIRT532011 NOX5 NADPH oxidase 5 2 2
MIRT533407 TXLNG taxilin gamma 2 2
MIRT533436 TRPC5 transient receptor potential cation channel subfamily C member 5 2 2
MIRT533866 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT539254 ANKRD50 ankyrin repeat domain 50 2 2
MIRT541451 C15orf48 chromosome 15 open reading frame 48 2 2
MIRT566794 MIER3 MIER family member 3 2 2
MIRT569294 SURF6 surfeit 6 2 2
MIRT571336 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT572802 PPP3CB protein phosphatase 3 catalytic subunit beta 2 2
MIRT572813 MYO1C myosin IC 2 2
MIRT574219 DMRT2 doublesex and mab-3 related transcription factor 2 2 2
MIRT607259 GRAMD1B GRAM domain containing 1B 2 4
MIRT609307 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT615459 REPS1 RALBP1 associated Eps domain containing 1 2 2
MIRT616861 RPLP1 ribosomal protein lateral stalk subunit P1 2 2
MIRT619415 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT619652 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT625325 TNFRSF13B TNF receptor superfamily member 13B 2 2
MIRT638980 ARFIP2 ADP ribosylation factor interacting protein 2 2 2
MIRT639458 ZNF429 zinc finger protein 429 2 2
MIRT640550 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT641473 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT642720 ATXN3 ataxin 3 2 2
MIRT643048 SMN1 survival of motor neuron 1, telomeric 2 2
MIRT644921 SMN2 survival of motor neuron 2, centromeric 2 2
MIRT645875 ZNF275 zinc finger protein 275 2 2
MIRT649824 LIPG lipase G, endothelial type 2 2
MIRT649851 GYS2 glycogen synthase 2 2 2
MIRT649972 TRAFD1 TRAF-type zinc finger domain containing 1 2 2
MIRT650675 ZNF259 ZPR1 zinc finger 1 1
MIRT651319 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT652876 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT652881 SYVN1 synoviolin 1 2 2
MIRT654144 RPAP2 RNA polymerase II associated protein 2 2 2
MIRT657080 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT657181 INO80C INO80 complex subunit C 2 2
MIRT657830 GJD3 gap junction protein delta 3 2 2
MIRT657897 GDF7 growth differentiation factor 7 2 2
MIRT659631 CDKN2AIP CDKN2A interacting protein 2 2
MIRT663115 SPTA1 spectrin alpha, erythrocytic 1 2 2
MIRT664739 METTL16 methyltransferase like 16 2 2
MIRT667551 LRAT lecithin retinol acyltransferase 2 2
MIRT668552 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT682893 XIAP X-linked inhibitor of apoptosis 2 2
MIRT683092 PRRG4 proline rich and Gla domain 4 2 2
MIRT683102 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT697648 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT709158 ZNF419 zinc finger protein 419 2 2
MIRT713220 RCAN2 regulator of calcineurin 2 2 2
MIRT713277 LAIR1 leukocyte associated immunoglobulin like receptor 1 2 2
MIRT715008 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT715051 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT715696 PNMAL2 paraneoplastic Ma antigen family member 8B 2 2
MIRT717250 TMEM246 transmembrane protein 246 2 2
MIRT717322 PGK1 phosphoglycerate kinase 1 2 2
MIRT717587 MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like 2 2
MIRT718122 CHST4 carbohydrate sulfotransferase 4 2 2
MIRT718418 CALN1 calneuron 1 2 2
MIRT718750 ZNF490 zinc finger protein 490 2 2
MIRT720048 PPP1R3F protein phosphatase 1 regulatory subunit 3F 2 2
MIRT721497 THRB thyroid hormone receptor beta 2 2
MIRT722531 EPRS glutamyl-prolyl-tRNA synthetase 2 2
MIRT723279 KRTAP21-2 keratin associated protein 21-2 2 2
MIRT724813 MSX2 msh homeobox 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6509-3p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-6509-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6509-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6509-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6509-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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