pre-miRNA Information
pre-miRNA hsa-mir-660   
Genomic Coordinates chrX: 50013241 - 50013337
Synonyms MIRN660, hsa-mir-660, MIR660
Description Homo sapiens miR-660 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-660-3p
Sequence 52| ACCUCCUGUGUGCAUGGAUUA |72
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1221699333 1 dbSNP
rs781893004 6 dbSNP
rs180785970 8 dbSNP
rs1272406504 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol OSTM1   
Synonyms GIPN, GL, HSPC019, OPTB5
Description osteopetrosis associated transmembrane protein 1
Transcript NM_014028   
Expression
Putative miRNA Targets on OSTM1
3'UTR of OSTM1
(miRNA target sites are highlighted)
>OSTM1|NM_014028|3'UTR
   1 GACCTACAAAATGGAGAATTGACATATCACGTGAATGAATGGTGGAAGACACAACTTGGTTTCAGAAAGAAGATAAACTG
  81 TGATTTGACAAGTCAAGCTCTTAAGAAATACAAGGACTTCAGATCCATTTTTAAATAAGAATTTTCGATTTTTCTTTCCT
 161 TTTCCACTTCTTTCTAACAGATTTGGATATTTTTAATTTCCAGGCATAGCAATGTTATCTATTTTAATGTGTATTTGTCA
 241 CAATAACAGAACATGCAAGAACAATCATTATTTTATTTTATAGGCATTTGATTACTATTCTAGACTTCTGGTATCTTCTT
 321 ACTAACATAAATATCTCAAGTAGAAAAGTTTTTGAAAACTAACATTTAAAAATTAATCAGTTACAGTAAAGACTTTGAAA
 401 AAGAAATGTACTTGTTAGGAAGTAGCTTAATTACCCCCCATTGCAGTATTATTGTTATATATATAGTTAATATGTTGTAC
 481 ATCACAATAATATATAATTCAGTCTCTAGTTTCCCTAGAGTCATTTTTGAAACCACTGATTGCAAACCTCCCTGACAATT
 561 TTTAAAAGTAGTAAGCCACATTACATTTATCTTTGTAAAAAGATTTATGGTAACTGGTTTCTTACTTGACTTTTATAAAT
 641 AGTATTTTACATCTTATTTTTGCCTTTATTTCATAAGTAATTTAAAAATCACTGGATTGCTTTATTATATTCAGGGCAAT
 721 ATGGATTATTTTTATACCAAGGATTTGCATCGTGAATTACATTAAGTTATTTGGCAATTTATAATTTATTACTACTTTAA
 801 ATCAAATGTAGCATTATCACACTGTATTTAAATTGTCATTTTTTAAAGGAATATTTTCTTCTTAAGATATATAGAGGATT
 881 TTGGAGAAGAGAGACAGGAGGGGTAAAACCAGCTTAAGGTTCAGCGAGCAGAAAGGGACCTGAGAGGATGCTCACTGTAA
 961 GACTGTTGGACAGTGGTGTGTATTGAGGGGATGAATCGGAACGATAGTCTCATGCAGAAAATAGTGAGATTAAGATCATC
1041 CTTATTGTTTCTAAATTATTTCAATCAGATGAAAGTGATACGATTGAAATGAAATCACATAGTTCGTGCTCAGAAATTCT
1121 ATTTTGGTATGTTTGTATTAGCCTTTAGAAAAAACACTCCGTTTCAGAATTGTTCACAGTTTTATTTCTTAGGTTTTTAG
1201 AGTTCAGGATTTCATTTATTAATTTCTTCTTGCTTTTTTGGTGGAAATAGGCTTTGTTGTAAACATTAAGAATATAAAAT
1281 CTCCTCTATATAGAAACAAGAATTTTGTTAAAAAGAGAATTTGAATCCCTTCCTATACTATAAAATGCTCTATAGGGAGA
1361 CAAAGTGTTTCTTTTTTCTTTTATGTTTACTGTTTATGTGGAGTGAAATATAAGGCTCTTGGATGTATAACATACTCAAA
1441 AGCTGTTACACTTTCTCTGATCTGCTGTGATCCACTGAAAATGTGCTGGGGTTTGTTCTGCTGTCACTGTTTATGCTGCT
1521 GGAACTTAGCACTGTCTTGATTTGAAGCATATGATTGAGAGCCATTTGAAGCAATCTTCATTAATGCAGATAAAACAAGT
1601 TTACATGTGCAGAGTTAGAAAATGACATGTTCAATTCTGTAAGTGGTGACTTTTTGAGCACCTTTCAGTATTATGTATTT
1681 GTAAAAACCATTGTTTTTGGATATAAAGCTAATAAGCACTTTAAAAAGGAAAAGGCAGCCTTTACTATTTTTTCTGGTTG
1761 AGTCATTGCTCTTTAGACCTAGCATCAGCAATAGATTTCAAAGATAAGTATTAAGCGCTACCCTAAAGTGTGTAAGTTTT
1841 TCATTTTGTCATATTGAAAAATGATTTGCATAGTACTGAATGTTGACACACAGCTTATATGTATTTACAAGAATATCTTT
1921 AAGTGTTTTTTTGACACATTAAAATAAAGGAAATAAGGAAATTGTAAGCTTTATTTGGATTTTTAAATACATTTTTAAAA
2001 TTTCAGATGTAATTTAACATCACATTTGTTTTTCAGGTATTGAGTTTAGATGCCTACTTTTATGAGTACCATCAGCTGGA
2081 CACAGTGTCTCATACCTGTATTTGCAGCACTTTGGGAGGCTGAAGCAGATCGCTGGAGCTTATGAGTTCGAGACCAGCCT
2161 GGACAACATAGTGAAACACTGTCTCTGCAAAAAATACAAAAATTAGCTGGGTATGGTGGTAAGTGCCTGTAGTCCTAGCT
2241 ACTTGGGAGGCTGAGATGGGAGGATGTCTTGAGCCCGGGAGGTGGAGGTTGCAATGAGCCAAGATTGTACCACTGCATTC
2321 CAACCTGGGCGACAGAGCCAGACCTTGTCTCAAAAAAAAAAAAAAAAAAAGAAAAAAGAAAGTACTGTCTGTCTTAAATT
2401 TTGCTGCAAATAAAAATGTACTTTGGATTATTTATTGTTGAACTTGAGAGATAGAAATAACATCAGATATATTTTTTCTT
2481 TTTTTTTTATAATTAATTTTTTTTTTTTTTTTTTTTGTAGAGACAGTGTCTCACTATGTTGCCCAAGCTGGTCTTGAACT
2561 CCTGAGTTCAAGAGATCCTCCTGCCTTAGCCTCCCAAAGTGCTGGGATTACAAGCATAAGCACCACACCTGGCTGAACAT
2641 CAGATATTTTAAAGTGTAGCCCAGAGTCTAGTTGGTAAATGTTACTTATATTGGGACTAGTATTTTCTAATGTTTCTGGG
2721 ATATGCTCCCTATAAAATGAAATGTTTTCCTGGAACAATGCTAATTAGGATTGCATTCCTGGCCAAAGACATGACATCAA
2801 ATAAGTAATAGACATCACCAGCAATGAATTTTGAAAAGCAAAAAATACTATTAACCTATATAACCATTTAAAATTTAAAA
2881 AATTATGTTCCAAGTACCTCTATTTTCTGAGCTAGAAGAAACCTTAGAGGCCATCTGATGATAGATTCCCAGAGCTGGAT
2961 GGATCCCTAGGGACTACCTAATCTGACTTTCTGTCCACTGCATGGATTCTTCTAAAAAGTATGTCACTTATTTCCCTACC
3041 TTATTAAGACTAAATAAGTGGAACATCATAGAGCTCTTTATTTATAACAGTCATTCTTTGATAGTCAACTCTTAAATGGA
3121 GACTTGAGATGCTTAAATATTGTACTACTGTGCTTATCTTGTAAAGATTTCATAAAATGATAGTATTGGTTATTTTAAAA
3201 AGGCTTTGGCTTATGCTGAATTATACATGTAGCACCAAAATGTTACAACTCTACTAAATTTCCTTGTTCTAAACTATTAT
3281 ATTAGCTATAATAAATATTAGTCATACATGTAACATGTTTAATGACAAATAACTTTCTTTATCTCCTTGGAATTAAAGAG
3361 GGCTTTTAAAAGATAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auuagguacgUGUGUCCUCCa 5'
                    | |||||||| 
Target 5' tggagaagagAGACAGGAGGg 3'
882 - 902 147.00 -13.70
2
miRNA  3' auUA-GGUACGUGUGUCCUCCa 5'
            || :| || :| |:||||| 
Target 5' ggATGTCTTGAGCCCGGGAGGt 3'
2262 - 2283 139.00 -15.90
3
miRNA  3' auUAGGUACG-UGUGUCCUCCa 5'
            :|||  || || ::||||| 
Target 5' taGTCCTAGCTACTTGGGAGGc 3'
2230 - 2251 127.00 -16.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
354981 147 ClinVar
354980 168 ClinVar
354979 177 ClinVar
354978 212 ClinVar
906784 262 ClinVar
354977 291 ClinVar
354976 331 ClinVar
354975 355 ClinVar
354974 432 ClinVar
906783 751 ClinVar
354973 778 ClinVar
905179 835 ClinVar
905178 872 ClinVar
354972 873 ClinVar
354971 953 ClinVar
905177 1007 ClinVar
354970 1023 ClinVar
354969 1038 ClinVar
904385 1045 ClinVar
354968 1082 ClinVar
904384 1085 ClinVar
354967 1161 ClinVar
904383 1166 ClinVar
354966 1205 ClinVar
354965 1334 ClinVar
354964 1352 ClinVar
354963 1367 ClinVar
354962 1399 ClinVar
354961 1407 ClinVar
354960 1427 ClinVar
354959 1442 ClinVar
354958 1455 ClinVar
354957 1469 ClinVar
354956 1574 ClinVar
354955 1634 ClinVar
906696 1844 ClinVar
354954 1883 ClinVar
354953 1933 ClinVar
354952 2035 ClinVar
354951 2053 ClinVar
354950 2138 ClinVar
354949 2145 ClinVar
906695 2195 ClinVar
905119 2276 ClinVar
906694 2276 ClinVar
354948 2277 ClinVar
354947 2283 ClinVar
354946 2301 ClinVar
354945 2317 ClinVar
354944 2329 ClinVar
354943 2344 ClinVar
354942 2352 ClinVar
905118 2362 ClinVar
354941 2364 ClinVar
904320 2366 ClinVar
354939 2371 ClinVar
354940 2371 ClinVar
904319 2487 ClinVar
354938 2489 ClinVar
354937 2517 ClinVar
354936 2518 ClinVar
354935 2519 ClinVar
354934 2547 ClinVar
904318 2707 ClinVar
354933 2755 ClinVar
904317 2769 ClinVar
354932 2773 ClinVar
907649 2799 ClinVar
354931 2858 ClinVar
354930 2887 ClinVar
354929 2990 ClinVar
907648 3060 ClinVar
907647 3186 ClinVar
354928 3192 ClinVar
906625 3256 ClinVar
906624 3280 ClinVar
354927 3319 ClinVar
354926 3329 ClinVar
COSN30534620 65 COSMIC
COSN30529998 96 COSMIC
COSN31521900 104 COSMIC
COSN30156900 110 COSMIC
COSN31573661 146 COSMIC
COSN31498611 180 COSMIC
COSN31524827 199 COSMIC
COSN32065008 218 COSMIC
COSN21341826 308 COSMIC
COSN14739731 331 COSMIC
COSN20075741 364 COSMIC
COSN31566618 438 COSMIC
COSN16131342 621 COSMIC
COSN26555087 653 COSMIC
COSN19525721 715 COSMIC
COSN22152100 926 COSMIC
COSN31962673 1010 COSMIC
COSN7781433 1021 COSMIC
COSN14701926 1038 COSMIC
COSN32062639 1111 COSMIC
COSN29989106 1402 COSMIC
COSN14976933 1407 COSMIC
COSN17539847 1470 COSMIC
COSN26930209 1585 COSMIC
COSN17844166 1600 COSMIC
COSN26763040 1700 COSMIC
COSN7781432 1773 COSMIC
COSN25807481 1802 COSMIC
COSN26075092 1861 COSMIC
COSN14689446 1883 COSMIC
COSN14991450 2301 COSMIC
COSN23977113 2351 COSMIC
COSN9289845 2366 COSMIC
COSN1322662 2452 COSMIC
COSN25352937 2493 COSMIC
COSN16456780 3297 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs761425710 1 dbSNP
rs776401339 3 dbSNP
rs1395914699 4 dbSNP
rs912682897 6 dbSNP
rs1314759285 8 dbSNP
rs768044493 19 dbSNP
rs760165490 24 dbSNP
rs774875378 26 dbSNP
rs988418891 30 dbSNP
rs185982479 31 dbSNP
rs780743548 31 dbSNP
rs1454100109 32 dbSNP
rs772654966 36 dbSNP
rs1171018565 46 dbSNP
rs1473717138 49 dbSNP
rs1174699480 50 dbSNP
rs1429065911 52 dbSNP
rs1465662070 53 dbSNP
rs552981793 75 dbSNP
rs542239478 79 dbSNP
rs574030337 88 dbSNP
rs1034355304 100 dbSNP
rs1032593743 115 dbSNP
rs1002020874 117 dbSNP
rs151246163 122 dbSNP
rs746912487 139 dbSNP
rs557199552 146 dbSNP
rs117394334 147 dbSNP
rs930015780 150 dbSNP
rs1221330808 154 dbSNP
rs1023741624 156 dbSNP
rs1282351015 158 dbSNP
rs897039542 166 dbSNP
rs1040995803 167 dbSNP
rs571193624 168 dbSNP
rs886060971 177 dbSNP
rs1192271025 179 dbSNP
rs1195270211 201 dbSNP
rs557839296 204 dbSNP
rs535160176 209 dbSNP
rs17069239 212 dbSNP
rs1480960938 218 dbSNP
rs1257001791 221 dbSNP
rs549386671 224 dbSNP
rs1346447918 226 dbSNP
rs1004715505 229 dbSNP
rs1167944204 241 dbSNP
rs925081255 246 dbSNP
rs1402639988 251 dbSNP
rs978139366 271 dbSNP
rs879808420 273 dbSNP
rs529254968 279 dbSNP
rs551825795 282 dbSNP
rs1325760033 284 dbSNP
rs886060970 291 dbSNP
rs1344428817 295 dbSNP
rs1048952937 300 dbSNP
rs1220428243 304 dbSNP
rs931661604 312 dbSNP
rs1490587444 313 dbSNP
rs993045807 314 dbSNP
rs142276258 324 dbSNP
rs1373635935 326 dbSNP
rs9320250 331 dbSNP
rs1436483191 332 dbSNP
rs944419911 333 dbSNP
rs912974204 337 dbSNP
rs988755367 343 dbSNP
rs888509203 349 dbSNP
rs1474337583 350 dbSNP
rs935496073 351 dbSNP
rs61491262 355 dbSNP
rs979653766 364 dbSNP
rs1459166236 372 dbSNP
rs15856 373 dbSNP
rs1286850493 383 dbSNP
rs1361018987 386 dbSNP
rs1382656919 398 dbSNP
rs897166877 399 dbSNP
rs1380578611 407 dbSNP
rs182640569 408 dbSNP
rs1314523611 412 dbSNP
rs1322506723 414 dbSNP
rs1254708298 415 dbSNP
rs369418567 432 dbSNP
rs1259259883 435 dbSNP
rs1486267057 452 dbSNP
rs1485752400 453 dbSNP
rs1209809648 457 dbSNP
rs570243710 459 dbSNP
rs1023604413 461 dbSNP
rs992150030 463 dbSNP
rs1385337168 466 dbSNP
rs889737016 470 dbSNP
rs1050008614 472 dbSNP
rs868182265 473 dbSNP
rs1454118839 493 dbSNP
rs1380749013 502 dbSNP
rs1403791821 503 dbSNP
rs1014989988 508 dbSNP
rs1005151740 515 dbSNP
rs1341835633 518 dbSNP
rs1336121631 524 dbSNP
rs1379993340 541 dbSNP
rs1230177665 545 dbSNP
rs781077304 547 dbSNP
rs1232851635 557 dbSNP
rs559047353 569 dbSNP
rs544863612 576 dbSNP
rs1229357376 582 dbSNP
rs1295175436 585 dbSNP
rs756308199 588 dbSNP
rs1270470953 589 dbSNP
rs1460332586 593 dbSNP
rs996010320 597 dbSNP
rs900185004 607 dbSNP
rs1040051719 610 dbSNP
rs542711668 621 dbSNP
rs1359659201 640 dbSNP
rs1008561111 643 dbSNP
rs1281872952 648 dbSNP
rs528221477 649 dbSNP
rs891564076 657 dbSNP
rs1175043368 660 dbSNP
rs1328033098 681 dbSNP
rs1419358641 686 dbSNP
rs944999911 695 dbSNP
rs1052862072 704 dbSNP
rs1447949564 705 dbSNP
rs1469172555 706 dbSNP
rs991822331 717 dbSNP
rs1360879107 721 dbSNP
rs935513096 734 dbSNP
rs1296562897 742 dbSNP
rs960269529 747 dbSNP
rs925420631 751 dbSNP
rs1044007162 752 dbSNP
rs1321860396 755 dbSNP
rs1223341482 761 dbSNP
rs952923142 766 dbSNP
rs1027451367 770 dbSNP
rs756978751 778 dbSNP
rs1363075401 786 dbSNP
rs916829269 801 dbSNP
rs1483157530 807 dbSNP
rs1183909551 811 dbSNP
rs559169975 813 dbSNP
rs1189440331 817 dbSNP
rs1173009241 820 dbSNP
rs1427138403 821 dbSNP
rs960724464 824 dbSNP
rs528945967 835 dbSNP
rs1354040746 839 dbSNP
rs889682955 845 dbSNP
rs538850926 864 dbSNP
rs1049678133 866 dbSNP
rs983532006 870 dbSNP
rs1440085355 871 dbSNP
rs748365107 872 dbSNP
rs886060969 873 dbSNP
rs371784892 874 dbSNP
rs1027410849 889 dbSNP
rs1336868391 894 dbSNP
rs1271603308 896 dbSNP
rs1001071739 900 dbSNP
rs1206748186 912 dbSNP
rs1213506386 922 dbSNP
rs1490095232 923 dbSNP
rs550398139 925 dbSNP
rs1296931621 926 dbSNP
rs1474361424 939 dbSNP
rs1185862773 942 dbSNP
rs1389570757 946 dbSNP
rs1042651778 947 dbSNP
rs1170609405 950 dbSNP
rs886060968 953 dbSNP
rs1018800360 956 dbSNP
rs1324577730 966 dbSNP
rs1351992290 968 dbSNP
rs1372615744 969 dbSNP
rs1277887619 974 dbSNP
rs1056040810 975 dbSNP
rs760069736 977 dbSNP
rs1229927099 986 dbSNP
rs1331750987 987 dbSNP
rs937698436 991 dbSNP
rs1358222084 995 dbSNP
rs1210093576 997 dbSNP
rs927521800 998 dbSNP
rs1009010049 1002 dbSNP
rs368663751 1003 dbSNP
rs891434231 1004 dbSNP
rs1053299538 1007 dbSNP
rs886060967 1023 dbSNP
rs1190539112 1032 dbSNP
rs904263669 1034 dbSNP
rs1064346 1038 dbSNP
rs1472554899 1040 dbSNP
rs1164067777 1041 dbSNP
rs948182939 1042 dbSNP
rs1175025828 1045 dbSNP
rs920103241 1047 dbSNP
rs1389987510 1049 dbSNP
rs1437927561 1050 dbSNP
rs1334070140 1054 dbSNP
rs1381407910 1058 dbSNP
rs573274541 1071 dbSNP
rs1244992156 1075 dbSNP
rs1285576568 1081 dbSNP
rs148730821 1082 dbSNP
rs961435170 1084 dbSNP
rs543280303 1085 dbSNP
rs1193390451 1089 dbSNP
rs145259466 1098 dbSNP
rs1241294845 1102 dbSNP
rs577413432 1106 dbSNP
rs907830667 1109 dbSNP
rs1275446830 1129 dbSNP
rs1188422419 1130 dbSNP
rs1214513616 1137 dbSNP
rs954033801 1142 dbSNP
rs577908204 1154 dbSNP
rs192232328 1155 dbSNP
rs1000785037 1158 dbSNP
rs1174922686 1159 dbSNP
rs920677135 1160 dbSNP
rs17069228 1161 dbSNP
rs557667717 1166 dbSNP
rs1333575010 1170 dbSNP
rs767937896 1179 dbSNP
rs867928731 1179 dbSNP
rs566197276 1198 dbSNP
rs145514255 1205 dbSNP
rs987384439 1208 dbSNP
rs955902671 1214 dbSNP
rs1221524777 1240 dbSNP
rs1031303504 1248 dbSNP
rs1345678029 1254 dbSNP
rs1056156496 1261 dbSNP
rs1368424849 1265 dbSNP
rs937645914 1274 dbSNP
rs926312576 1291 dbSNP
rs1181734490 1292 dbSNP
rs1252915525 1298 dbSNP
rs1473768713 1299 dbSNP
rs1197796570 1301 dbSNP
rs1327702922 1307 dbSNP
rs572109702 1317 dbSNP
rs1344283570 1332 dbSNP
rs9374008 1334 dbSNP
rs1428644875 1340 dbSNP
rs1308250279 1347 dbSNP
rs1402001973 1349 dbSNP
rs9372179 1352 dbSNP
rs972872350 1359 dbSNP
rs550900778 1360 dbSNP
rs1453150489 1361 dbSNP
rs1255233957 1364 dbSNP
rs73504439 1367 dbSNP
rs1257764044 1374 dbSNP
rs1057119821 1378 dbSNP
rs1240646607 1384 dbSNP
rs1218022780 1386 dbSNP
rs1484182297 1388 dbSNP
rs939584757 1391 dbSNP
rs886682312 1396 dbSNP
rs886060966 1399 dbSNP
rs12567 1407 dbSNP
rs1279706012 1426 dbSNP
rs116796449 1427 dbSNP
rs1201667321 1432 dbSNP
rs140320992 1442 dbSNP
rs1021311058 1444 dbSNP
rs920709621 1451 dbSNP
rs528241865 1455 dbSNP
rs974770728 1457 dbSNP
rs879856212 1459 dbSNP
rs1009328205 1461 dbSNP
rs886060965 1469 dbSNP
rs943226650 1471 dbSNP
rs1292687867 1472 dbSNP
rs559422492 1482 dbSNP
rs911692373 1484 dbSNP
rs1286702795 1486 dbSNP
rs79670426 1486 dbSNP
rs1388384647 1495 dbSNP
rs1432466367 1501 dbSNP
rs987804481 1503 dbSNP
rs1227720471 1506 dbSNP
rs1298452063 1507 dbSNP
rs773889431 1512 dbSNP
rs1219653180 1516 dbSNP
rs548757380 1518 dbSNP
rs1265170999 1519 dbSNP
rs1001907747 1522 dbSNP
rs1397468737 1528 dbSNP
rs1212079116 1530 dbSNP
rs1260225459 1535 dbSNP
rs980273809 1537 dbSNP
rs1048704772 1549 dbSNP
rs1031986401 1551 dbSNP
rs898717843 1553 dbSNP
rs1368740646 1558 dbSNP
rs1459243970 1561 dbSNP
rs1286941721 1564 dbSNP
rs1177237491 1573 dbSNP
rs41287528 1574 dbSNP
rs940129266 1576 dbSNP
rs968343183 1587 dbSNP
rs986998152 1602 dbSNP
rs1022737762 1605 dbSNP
rs1226741134 1606 dbSNP
rs140067068 1607 dbSNP
rs895311649 1614 dbSNP
rs1035228877 1620 dbSNP
rs1488755690 1623 dbSNP
rs1004117503 1628 dbSNP
rs886060964 1634 dbSNP
rs1256832102 1638 dbSNP
rs1208880986 1639 dbSNP
rs1484649008 1656 dbSNP
rs1048435391 1664 dbSNP
rs543011652 1673 dbSNP
rs1282463377 1674 dbSNP
rs377396602 1679 dbSNP
rs930659574 1684 dbSNP
rs1293216376 1700 dbSNP
rs1256385474 1714 dbSNP
rs1425239779 1716 dbSNP
rs1156618076 1736 dbSNP
rs1410958916 1743 dbSNP
rs1457648569 1747 dbSNP
rs899149369 1757 dbSNP
rs1039100008 1761 dbSNP
rs1403900571 1762 dbSNP
rs1215914408 1765 dbSNP
rs796709266 1773 dbSNP
rs1302380701 1782 dbSNP
rs943424921 1807 dbSNP
rs749243476 1816 dbSNP
rs979434928 1817 dbSNP
rs911958834 1822 dbSNP
rs1377783436 1829 dbSNP
rs886453188 1830 dbSNP
rs1051625396 1835 dbSNP
rs577945568 1838 dbSNP
rs1270573422 1844 dbSNP
rs934474235 1851 dbSNP
rs1461920774 1855 dbSNP
rs1310998408 1857 dbSNP
rs1208789587 1862 dbSNP
rs1353076456 1863 dbSNP
rs1020837421 1865 dbSNP
rs1179585549 1868 dbSNP
rs1250687923 1870 dbSNP
rs1472792287 1872 dbSNP
rs924562677 1876 dbSNP
rs1184123785 1877 dbSNP
rs7662 1883 dbSNP
rs541627700 1884 dbSNP
rs572519504 1904 dbSNP
rs1175405714 1929 dbSNP
rs1417496726 1933 dbSNP
rs74900179 1933 dbSNP
rs886060963 1933 dbSNP
rs377109852 1934 dbSNP
rs1476196868 1938 dbSNP
rs960650396 1939 dbSNP
rs1290652581 1947 dbSNP
rs1256963404 1953 dbSNP
rs1366048771 1958 dbSNP
rs915545614 1972 dbSNP
rs1219163407 1973 dbSNP
rs1182337564 1979 dbSNP
rs1313424928 1984 dbSNP
rs991144931 1989 dbSNP
rs959855718 1992 dbSNP
rs1035829803 1994 dbSNP
rs904917753 1998 dbSNP
rs1206964975 1999 dbSNP
rs1244791339 2005 dbSNP
rs1191718772 2006 dbSNP
rs1027829280 2007 dbSNP
rs1166838856 2012 dbSNP
rs1370162351 2013 dbSNP
rs1318154581 2016 dbSNP
rs1272215393 2017 dbSNP
rs1003743807 2025 dbSNP
rs1430670480 2028 dbSNP
rs1356740914 2033 dbSNP
rs548119179 2035 dbSNP
rs994478263 2037 dbSNP
rs17069215 2053 dbSNP
rs1275955868 2057 dbSNP
rs576598290 2058 dbSNP
rs1300229018 2061 dbSNP
rs1370409916 2062 dbSNP
rs556640183 2068 dbSNP
rs1466524398 2071 dbSNP
rs1394227180 2075 dbSNP
rs995013101 2083 dbSNP
rs1225512669 2085 dbSNP
rs1296252187 2086 dbSNP
rs578057828 2089 dbSNP
rs1230173535 2092 dbSNP
rs3198289 2094 dbSNP
rs1287402427 2114 dbSNP
rs1193684972 2120 dbSNP
rs1222121538 2126 dbSNP
rs1036067030 2130 dbSNP
rs899181959 2131 dbSNP
rs1039047292 2132 dbSNP
rs115370044 2138 dbSNP
rs1450260826 2139 dbSNP
rs932833109 2142 dbSNP
rs147517615 2145 dbSNP
rs1180260380 2150 dbSNP
rs775442360 2154 dbSNP
rs1052250123 2155 dbSNP
rs934516287 2157 dbSNP
rs571535498 2161 dbSNP
rs1411979054 2165 dbSNP
rs1405105108 2172 dbSNP
rs1044208525 2179 dbSNP
rs9400181 2185 dbSNP
rs1397259293 2186 dbSNP
rs772382421 2188 dbSNP
rs913903177 2194 dbSNP
rs924418376 2195 dbSNP
rs1436723228 2204 dbSNP
rs1282066055 2206 dbSNP
rs1043009752 2207 dbSNP
rs117342375 2211 dbSNP
rs960599216 2216 dbSNP
rs927904288 2223 dbSNP
rs1291792133 2229 dbSNP
rs113229784 2240 dbSNP
rs1358050677 2259 dbSNP
rs947315936 2266 dbSNP
rs546976371 2276 dbSNP
rs778098156 2277 dbSNP
rs1195467956 2281 dbSNP
rs959966666 2282 dbSNP
rs112283202 2283 dbSNP
rs1312028121 2287 dbSNP
rs1448178703 2289 dbSNP
rs1370670172 2291 dbSNP
rs1159061471 2294 dbSNP
rs1324326313 2295 dbSNP
rs1383386811 2299 dbSNP
rs9386700 2301 dbSNP
rs961853360 2307 dbSNP
rs527256747 2317 dbSNP
rs1026410193 2323 dbSNP
rs112792700 2329 dbSNP
rs1227631440 2330 dbSNP
rs1365616677 2331 dbSNP
rs1160315706 2332 dbSNP
rs891363149 2335 dbSNP
rs113263335 2344 dbSNP
rs145959907 2349 dbSNP
rs1275841442 2351 dbSNP
rs1491263012 2352 dbSNP
rs886060962 2352 dbSNP
rs1491180633 2353 dbSNP
rs199690064 2353 dbSNP
rs1484571245 2361 dbSNP
rs201149316 2362 dbSNP
rs1241452555 2363 dbSNP
rs60621815 2364 dbSNP
rs567737242 2365 dbSNP
rs796502550 2365 dbSNP
rs564822548 2366 dbSNP
rs900002513 2366 dbSNP
rs1314324807 2367 dbSNP
rs541313612 2367 dbSNP
rs1331889090 2368 dbSNP
rs1408967093 2370 dbSNP
rs1230979664 2371 dbSNP
rs1273087812 2371 dbSNP
rs1288772032 2371 dbSNP
rs200507397 2371 dbSNP
rs58798743 2371 dbSNP
rs749617895 2371 dbSNP
rs764343945 2371 dbSNP
rs766019538 2371 dbSNP
rs865891537 2371 dbSNP
rs878868667 2371 dbSNP
rs878991430 2372 dbSNP
rs994950845 2372 dbSNP
rs1377621990 2373 dbSNP
rs1478051800 2373 dbSNP
rs963619886 2375 dbSNP
rs1175026327 2376 dbSNP
rs1387883451 2377 dbSNP
rs1376660747 2378 dbSNP
rs1384918304 2378 dbSNP
rs1398377589 2378 dbSNP
rs1428737310 2378 dbSNP
rs1322811698 2379 dbSNP
rs1380746596 2381 dbSNP
rs1387174487 2382 dbSNP
rs755506792 2387 dbSNP
rs1420208878 2391 dbSNP
rs1017807107 2395 dbSNP
rs1227951745 2401 dbSNP
rs1007568405 2406 dbSNP
rs1171517759 2418 dbSNP
rs1478855611 2426 dbSNP
rs1208471098 2427 dbSNP
rs890414701 2430 dbSNP
rs914017653 2437 dbSNP
rs1052362134 2439 dbSNP
rs568709476 2452 dbSNP
rs1191977663 2454 dbSNP
rs1168820766 2456 dbSNP
rs1051876548 2457 dbSNP
rs999317575 2462 dbSNP
rs1216760074 2471 dbSNP
rs572608557 2473 dbSNP
rs1391308093 2477 dbSNP
rs1443055927 2478 dbSNP
rs924289945 2478 dbSNP
rs1363133971 2482 dbSNP
rs1434540966 2482 dbSNP
rs981097901 2487 dbSNP
rs903257147 2488 dbSNP
rs1265257494 2489 dbSNP
rs562181829 2489 dbSNP
rs879213270 2489 dbSNP
rs920414377 2489 dbSNP
rs1278888974 2490 dbSNP
rs947201420 2492 dbSNP
rs1188689398 2494 dbSNP
rs1202717414 2496 dbSNP
rs1421713608 2499 dbSNP
rs1186534870 2500 dbSNP
rs961770479 2502 dbSNP
rs1462898904 2505 dbSNP
rs894431012 2508 dbSNP
rs1055685546 2510 dbSNP
rs1156840958 2516 dbSNP
rs1289546045 2517 dbSNP
rs1387905197 2517 dbSNP
rs1394512733 2517 dbSNP
rs1456754799 2517 dbSNP
rs562640840 2517 dbSNP
rs776420236 2517 dbSNP
rs978661347 2517 dbSNP
rs886060961 2518 dbSNP
rs1482033031 2519 dbSNP
rs886060960 2519 dbSNP
rs1180937681 2520 dbSNP
rs1270008183 2520 dbSNP
rs1257863258 2524 dbSNP
rs1476063569 2525 dbSNP
rs1179808142 2526 dbSNP
rs1411076496 2533 dbSNP
rs754306857 2540 dbSNP
rs1472895418 2541 dbSNP
rs1159836039 2543 dbSNP
rs111332944 2547 dbSNP
rs1464655934 2556 dbSNP
rs938362320 2568 dbSNP
rs1278886176 2569 dbSNP
rs928263709 2577 dbSNP
rs1302477819 2580 dbSNP
rs982563993 2592 dbSNP
rs1348350077 2596 dbSNP
rs1414315447 2610 dbSNP
rs1014702202 2616 dbSNP
rs1046652 2618 dbSNP
rs929742447 2619 dbSNP
rs113959072 2621 dbSNP
rs1224834793 2626 dbSNP
rs1308446375 2627 dbSNP
rs1029877438 2632 dbSNP
rs139650196 2643 dbSNP
rs1416134747 2654 dbSNP
rs973578631 2655 dbSNP
rs963482786 2659 dbSNP
rs1250805618 2661 dbSNP
rs1480884452 2663 dbSNP
rs1178862862 2664 dbSNP
rs900117147 2666 dbSNP
rs1431477019 2670 dbSNP
rs1175508799 2672 dbSNP
rs1402583950 2679 dbSNP
rs1167160646 2690 dbSNP
rs1395870683 2693 dbSNP
rs1017816881 2694 dbSNP
rs1306493081 2711 dbSNP
rs538320940 2712 dbSNP
rs1370352150 2724 dbSNP
rs1460128676 2730 dbSNP
rs1443456703 2737 dbSNP
rs1300415347 2739 dbSNP
rs1366167473 2743 dbSNP
rs141162902 2744 dbSNP
rs1303542388 2745 dbSNP
rs79345723 2753 dbSNP
rs6921341 2755 dbSNP
rs998848985 2769 dbSNP
rs903307636 2770 dbSNP
rs1021710885 2771 dbSNP
rs886060959 2773 dbSNP
rs1488131465 2776 dbSNP
rs894273971 2778 dbSNP
rs1253713483 2794 dbSNP
rs747305519 2799 dbSNP
rs1166934876 2803 dbSNP
rs920544794 2805 dbSNP
rs558042933 2825 dbSNP
rs973623633 2844 dbSNP
rs1320262642 2855 dbSNP
rs534652017 2858 dbSNP
rs11545343 2867 dbSNP
rs1259010961 2877 dbSNP
rs1325925541 2882 dbSNP
rs41287526 2887 dbSNP
rs1432338506 2897 dbSNP
rs1296371935 2908 dbSNP
rs1047190895 2909 dbSNP
rs1380883778 2917 dbSNP
rs111504680 2923 dbSNP
rs919687669 2935 dbSNP
rs954484888 2940 dbSNP
rs1214263272 2943 dbSNP
rs1275040254 2944 dbSNP
rs973755616 2945 dbSNP
rs1186800628 2946 dbSNP
rs1029070050 2948 dbSNP
rs974464251 2966 dbSNP
rs942223844 2969 dbSNP
rs910692641 2974 dbSNP
rs1341038568 2976 dbSNP
rs986304416 2980 dbSNP
rs376154345 2990 dbSNP
rs1461302123 2993 dbSNP
rs535254595 3002 dbSNP
rs1402215284 3004 dbSNP
rs1170861296 3013 dbSNP
rs1326615212 3035 dbSNP
rs1432467751 3037 dbSNP
rs1282158111 3038 dbSNP
rs1030580701 3041 dbSNP
rs977859973 3044 dbSNP
rs563889052 3060 dbSNP
rs1031167362 3062 dbSNP
rs767206124 3067 dbSNP
rs761442078 3068 dbSNP
rs148211227 3074 dbSNP
rs1164540295 3075 dbSNP
rs1011643582 3080 dbSNP
rs540946708 3084 dbSNP
rs1447737702 3090 dbSNP
rs894326221 3095 dbSNP
rs189099079 3106 dbSNP
rs1034624335 3108 dbSNP
rs1180089553 3109 dbSNP
rs906654459 3111 dbSNP
rs572211381 3118 dbSNP
rs1239205865 3123 dbSNP
rs1420584553 3149 dbSNP
rs1471912984 3149 dbSNP
rs1157416299 3152 dbSNP
rs1304 3156 dbSNP
rs1002689333 3157 dbSNP
rs1385072350 3161 dbSNP
rs907151033 3164 dbSNP
rs1333029523 3166 dbSNP
rs1374515744 3170 dbSNP
rs1046944249 3173 dbSNP
rs532767983 3177 dbSNP
rs1415148421 3178 dbSNP
rs562003144 3186 dbSNP
rs185905869 3192 dbSNP
rs1356951241 3194 dbSNP
rs1280123386 3202 dbSNP
rs1351489321 3203 dbSNP
rs1038100349 3217 dbSNP
rs1278827565 3223 dbSNP
rs1444485079 3229 dbSNP
rs1211991437 3234 dbSNP
rs899051203 3238 dbSNP
rs1482329195 3247 dbSNP
rs1378782384 3251 dbSNP
rs1331814175 3253 dbSNP
rs528019563 3256 dbSNP
rs113100990 3259 dbSNP
rs768143992 3266 dbSNP
rs910957057 3271 dbSNP
rs1324948581 3285 dbSNP
rs907709502 3286 dbSNP
rs1434984824 3288 dbSNP
rs562382883 3297 dbSNP
rs1314419624 3307 dbSNP
rs933044981 3310 dbSNP
rs112919802 3319 dbSNP
rs1442111974 3323 dbSNP
rs1444401238 3327 dbSNP
rs112424495 3329 dbSNP
rs1347338047 3333 dbSNP
rs968421137 3337 dbSNP
rs1340480854 3341 dbSNP
rs1467310185 3341 dbSNP
rs756784557 3343 dbSNP
rs989687584 3346 dbSNP
rs1440081048 3351 dbSNP
rs1196081669 3356 dbSNP
rs753518337 3358 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' auuagguacgUGUGUCCUCca 5'
                    | |||||||  
Target 5' ---agaagagAGACAGGAG-- 3'
1 - 16
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000193322.3 | 3UTR | AGAAGAGAGACAGGAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
348 hsa-miR-660-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059151 TXNIP thioredoxin interacting protein 2 2
MIRT294324 ZNF264 zinc finger protein 264 2 2
MIRT306043 SKIL SKI like proto-oncogene 2 4
MIRT392841 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT444084 C12orf73 chromosome 12 open reading frame 73 2 2
MIRT458774 CES2 carboxylesterase 2 2 2
MIRT460273 SLC26A2 solute carrier family 26 member 2 2 2
MIRT462675 HMOX1 heme oxygenase 1 2 4
MIRT473711 MAPK1 mitogen-activated protein kinase 1 2 6
MIRT478539 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT483234 FAM13C family with sequence similarity 13 member C 2 4
MIRT486255 BCORL1 BCL6 corepressor like 1 2 2
MIRT501951 MAT2A methionine adenosyltransferase 2A 2 10
MIRT513043 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT513249 FBXO17 F-box protein 17 2 2
MIRT526940 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT528176 C6orf47 chromosome 6 open reading frame 47 2 2
MIRT531525 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT532746 CMTM6 CKLF like MARVEL transmembrane domain containing 6 2 2
MIRT534241 SLC23A1 solute carrier family 23 member 1 2 2
MIRT538198 DBN1 drebrin 1 2 2
MIRT539305 AMOTL1 angiomotin like 1 2 2
MIRT539567 CNKSR3 CNKSR family member 3 2 4
MIRT540043 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540232 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540251 RGS17 regulator of G protein signaling 17 2 2
MIRT540878 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT543484 RXRA retinoid X receptor alpha 2 2
MIRT551435 F2 coagulation factor II, thrombin 2 2
MIRT553925 STK11IP serine/threonine kinase 11 interacting protein 2 2
MIRT556312 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT556943 ING1 inhibitor of growth family member 1 2 2
MIRT569883 EFEMP2 EGF containing fibulin like extracellular matrix protein 2 2 2
MIRT571849 NRBF2 nuclear receptor binding factor 2 2 2
MIRT572420 VWA5A von Willebrand factor A domain containing 5A 2 2
MIRT572495 BTN2A2 butyrophilin subfamily 2 member A2 2 2
MIRT572564 AFF1 AF4/FMR2 family member 1 2 2
MIRT572883 CHST15 carbohydrate sulfotransferase 15 2 2
MIRT574988 Slc38a5 solute carrier family 38, member 5 2 4
MIRT575264 Timp3 tissue inhibitor of metalloproteinase 3 2 2
MIRT608476 RRP36 ribosomal RNA processing 36 2 4
MIRT608529 TMOD3 tropomodulin 3 2 2
MIRT608578 RNF149 ring finger protein 149 2 2
MIRT608615 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT608679 STPG1 sperm tail PG-rich repeat containing 1 2 2
MIRT608727 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2 2
MIRT609575 CATSPER4 cation channel sperm associated 4 2 2
MIRT609710 TMEM132C transmembrane protein 132C 2 2
MIRT609858 DAZAP2 DAZ associated protein 2 2 2
MIRT610262 LRRC47 leucine rich repeat containing 47 2 2
MIRT610349 AGTRAP angiotensin II receptor associated protein 2 2
MIRT610729 PEA15 phosphoprotein enriched in astrocytes 15 2 4
MIRT610803 KLK2 kallikrein related peptidase 2 2 2
MIRT610968 MAFK MAF bZIP transcription factor K 2 2
MIRT611117 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 2 2
MIRT611600 JAKMIP3 Janus kinase and microtubule interacting protein 3 2 4
MIRT612211 TMEM109 transmembrane protein 109 2 2
MIRT612248 MICALL1 MICAL like 1 2 2
MIRT613252 CAV1 caveolin 1 2 4
MIRT613323 ARID3A AT-rich interaction domain 3A 2 4
MIRT613514 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT613605 TP53 tumor protein p53 2 2
MIRT613632 ARHGAP35 Rho GTPase activating protein 35 2 2
MIRT613809 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT614835 PRKCA protein kinase C alpha 2 2
MIRT614985 GIPC1 GIPC PDZ domain containing family member 1 2 2
MIRT615320 MLXIPL MLX interacting protein like 2 2
MIRT615504 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT615529 SPANXN5 SPANX family member N5 2 2
MIRT615610 SPANXN1 SPANX family member N1 2 2
MIRT615755 C6 complement C6 2 2
MIRT615952 SORD sorbitol dehydrogenase 2 2
MIRT616284 HMGB1 high mobility group box 1 2 2
MIRT616626 KCNJ11 potassium voltage-gated channel subfamily J member 11 2 4
MIRT616882 DGCR14 ess-2 splicing factor homolog 2 2
MIRT616994 COL19A1 collagen type XIX alpha 1 chain 2 2
MIRT617080 SPIB Spi-B transcription factor 2 2
MIRT617345 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617712 RUSC2 RUN and SH3 domain containing 2 2 2
MIRT618102 PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 2 2
MIRT618493 DENND5B DENN domain containing 5B 2 4
MIRT618756 SLC38A5 solute carrier family 38 member 5 2 5
MIRT619928 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT620028 NFAM1 NFAT activating protein with ITAM motif 1 2 2
MIRT620087 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 2
MIRT620209 VN1R1 vomeronasal 1 receptor 1 2 2
MIRT620557 C10orf10 chromosome 10 open reading frame 10 2 4
MIRT620770 CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) 2 2
MIRT620784 IL10RB interleukin 10 receptor subunit beta 2 2
MIRT620895 ANO7 anoctamin 7 2 2
MIRT621284 PIWIL1 piwi like RNA-mediated gene silencing 1 2 2
MIRT622594 PRRG4 proline rich and Gla domain 4 2 2
MIRT623273 MED28 mediator complex subunit 28 2 2
MIRT624247 VSIG2 V-set and immunoglobulin domain containing 2 2 2
MIRT624298 COMMD2 COMM domain containing 2 2 2
MIRT624526 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT624567 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT624692 AR androgen receptor 2 2
MIRT624767 AKR1D1 aldo-keto reductase family 1 member D1 2 2
MIRT624829 ACO1 aconitase 1 2 2
MIRT625159 ZCCHC8 zinc finger CCHC-type containing 8 2 4
MIRT625261 ZNF566 zinc finger protein 566 2 2
MIRT625388 ZNF716 zinc finger protein 716 2 2
MIRT625827 FBXO42 F-box protein 42 2 2
MIRT625837 NXPE2 neurexophilin and PC-esterase domain family member 2 2 2
MIRT626021 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626052 PDE4C phosphodiesterase 4C 2 2
MIRT626354 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT626778 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 2
MIRT627050 HOXA13 homeobox A13 2 2
MIRT627274 XIAP X-linked inhibitor of apoptosis 2 2
MIRT627310 WDR31 WD repeat domain 31 2 2
MIRT627916 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT630557 CCDC107 coiled-coil domain containing 107 2 2
MIRT630775 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT632083 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT633138 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT633711 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT634361 RNF157 ring finger protein 157 2 2
MIRT635739 IFNAR1 interferon alpha and beta receptor subunit 1 2 2
MIRT636963 APTX aprataxin 2 2
MIRT637373 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT637815 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT637911 FAM153B family with sequence similarity 153 member B 2 2
MIRT638474 PANK3 pantothenate kinase 3 2 2
MIRT638633 GSR glutathione-disulfide reductase 2 4
MIRT639493 TSPAN1 tetraspanin 1 2 2
MIRT639773 GPR45 G protein-coupled receptor 45 2 2
MIRT639781 RAX retina and anterior neural fold homeobox 2 2
MIRT639915 SLIT1 slit guidance ligand 1 2 2
MIRT640055 MCL1 MCL1, BCL2 family apoptosis regulator 2 4
MIRT640108 DUOX2 dual oxidase 2 2 2
MIRT640402 ZNF785 zinc finger protein 785 2 2
MIRT640555 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT640751 ZBTB26 zinc finger and BTB domain containing 26 2 2
MIRT640765 GLO1 glyoxalase I 2 2
MIRT640915 RAB13 RAB13, member RAS oncogene family 2 2
MIRT641521 CREBBP CREB binding protein 2 2
MIRT641533 SNW1 SNW domain containing 1 2 2
MIRT641692 SPCS1 signal peptidase complex subunit 1 2 2
MIRT641745 MACROD2 MACRO domain containing 2 2 2
MIRT641866 STOML1 stomatin like 1 2 2
MIRT641951 RNF115 ring finger protein 115 2 2
MIRT642205 SMAGP small cell adhesion glycoprotein 2 2
MIRT642420 CILP2 cartilage intermediate layer protein 2 2 2
MIRT643028 LETM2 leucine zipper and EF-hand containing transmembrane protein 2 2 2
MIRT643406 PAX1 paired box 1 2 2
MIRT643500 ZNF195 zinc finger protein 195 2 2
MIRT643754 LEFTY2 left-right determination factor 2 2 2
MIRT643898 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT644036 CENPM centromere protein M 2 2
MIRT644200 LAT2 linker for activation of T-cells family member 2 2 2
MIRT644228 ADD1 adducin 1 2 2
MIRT644690 GPR55 G protein-coupled receptor 55 2 2
MIRT645128 HES2 hes family bHLH transcription factor 2 2 2
MIRT645347 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT645897 ATP2B3 ATPase plasma membrane Ca2+ transporting 3 2 2
MIRT645905 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT646049 NPR1 natriuretic peptide receptor 1 2 2
MIRT646137 C1orf147 chromosome 1 open reading frame 147 2 2
MIRT646219 DUSP10 dual specificity phosphatase 10 2 2
MIRT646385 SLC22A6 solute carrier family 22 member 6 2 2
MIRT646739 FADS1 fatty acid desaturase 1 2 2
MIRT646877 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT647109 GNL3L G protein nucleolar 3 like 2 2
MIRT647523 PPIE peptidylprolyl isomerase E 2 2
MIRT647553 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT647755 NBPF3 NBPF member 3 2 2
MIRT648075 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT648225 TM4SF20 transmembrane 4 L six family member 20 2 2
MIRT648441 MYOZ3 myozenin 3 2 2
MIRT648823 ZNF689 zinc finger protein 689 2 2
MIRT649229 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT649237 FEM1A fem-1 homolog A 2 2
MIRT649249 TRIM65 tripartite motif containing 65 2 2
MIRT649459 WDR70 WD repeat domain 70 2 2
MIRT649637 RASA4 RAS p21 protein activator 4 2 2
MIRT650745 FKTN fukutin 2 2
MIRT651041 ZNF652 zinc finger protein 652 2 2
MIRT651754 VEGFA vascular endothelial growth factor A 2 2
MIRT651799 UST uronyl 2-sulfotransferase 2 2
MIRT652562 TLX1 T-cell leukemia homeobox 1 2 2
MIRT652776 TENM3 teneurin transmembrane protein 3 2 2
MIRT652939 SYNGR1 synaptogyrin 1 2 2
MIRT653006 STXBP5L syntaxin binding protein 5 like 2 2
MIRT653030 STX1B syntaxin 1B 2 2
MIRT653279 SNAP29 synaptosome associated protein 29 2 2
MIRT654057 S1PR1 sphingosine-1-phosphate receptor 1 2 2
MIRT654329 RBM33 RNA binding motif protein 33 2 2
MIRT654650 PTAFR platelet activating factor receptor 2 2
MIRT656577 LSM10 LSM10, U7 small nuclear RNA associated 2 2
MIRT656595 LSAMP limbic system-associated membrane protein 2 2
MIRT656646 LRIG1 leucine rich repeats and immunoglobulin like domains 1 2 2
MIRT656739 LMBR1L limb development membrane protein 1 like 2 2
MIRT656903 KIAA1958 KIAA1958 2 2
MIRT657392 HM13 histocompatibility minor 13 2 2
MIRT657528 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT657611 GRID1 glutamate ionotropic receptor delta type subunit 1 2 2
MIRT657668 GPR26 G protein-coupled receptor 26 2 2
MIRT657689 GPR155 G protein-coupled receptor 155 2 2
MIRT657818 GJD3 gap junction protein delta 3 2 2
MIRT658410 FAM208A family with sequence similarity 208 member A 2 2
MIRT658955 DNMT3A DNA methyltransferase 3 alpha 2 2
MIRT659425 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT659499 CISD3 CDGSH iron sulfur domain 3 2 2
MIRT659994 C2CD2L C2CD2 like 2 2
MIRT660215 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660493 ARRDC3 arrestin domain containing 3 2 2
MIRT660761 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT660827 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT661576 EPHX2 epoxide hydrolase 2 2 2
MIRT661711 MTO1 mitochondrial tRNA translation optimization 1 2 4
MIRT661826 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT662123 APOL6 apolipoprotein L6 2 2
MIRT662254 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT662314 ADM2 adrenomedullin 2 2 2
MIRT662341 MYLK3 myosin light chain kinase 3 2 2
MIRT662453 SEMA5A semaphorin 5A 2 2
MIRT662746 LRRC3C leucine rich repeat containing 3C 2 2
MIRT662901 GJB1 gap junction protein beta 1 2 2
MIRT663018 KIAA1586 KIAA1586 2 2
MIRT663102 THEM4 thioesterase superfamily member 4 2 2
MIRT663574 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT664125 C4orf32 family with sequence similarity 241 member A 2 2
MIRT664560 SORBS2 sorbin and SH3 domain containing 2 2 2
MIRT665589 TUBD1 tubulin delta 1 2 2
MIRT666464 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT666527 RNF170 ring finger protein 170 2 2
MIRT666874 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 2 2
MIRT667055 PARVA parvin alpha 2 2
MIRT667282 NAV1 neuron navigator 1 2 2
MIRT667928 IGLON5 IgLON family member 5 2 2
MIRT667957 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 2 2
MIRT668336 FKBP5 FK506 binding protein 5 2 2
MIRT668718 DIP2C disco interacting protein 2 homolog C 2 2
MIRT669310 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669688 ABLIM1 actin binding LIM protein 1 2 2
MIRT671524 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT672112 TLCD2 TLC domain containing 2 2 4
MIRT672186 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT672702 ZNF677 zinc finger protein 677 2 2
MIRT673473 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT673617 HPSE heparanase 2 2
MIRT673763 ZNF333 zinc finger protein 333 2 2
MIRT674817 FAM229B family with sequence similarity 229 member B 2 2
MIRT675304 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675404 SVOP SV2 related protein 2 2
MIRT676163 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676320 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT676347 PCCB propionyl-CoA carboxylase beta subunit 2 2
MIRT676526 RNF216 ring finger protein 216 2 2
MIRT676571 VSIG1 V-set and immunoglobulin domain containing 1 2 2
MIRT676588 RDH13 retinol dehydrogenase 13 2 2
MIRT676648 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676723 METTL14 methyltransferase like 14 2 2
MIRT676805 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT676813 SHROOM4 shroom family member 4 2 2
MIRT677204 MURC caveolae associated protein 4 2 2
MIRT677284 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677359 POC1A POC1 centriolar protein A 2 2
MIRT677516 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677530 OCIAD2 OCIA domain containing 2 2 2
MIRT677627 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT677669 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT678056 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT678132 METTL21A methyltransferase like 21A 2 2
MIRT678154 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678463 GLYAT glycine-N-acyltransferase 2 2
MIRT678614 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT678716 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT679161 ZDHHC15 zinc finger DHHC-type containing 15 2 2
MIRT679307 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679430 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT679499 ZNF106 zinc finger protein 106 2 2
MIRT679963 VTA1 vesicle trafficking 1 2 2
MIRT679983 E2F2 E2F transcription factor 2 2 2
MIRT680153 TOP3A DNA topoisomerase III alpha 2 2
MIRT680304 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT680330 LRRC58 leucine rich repeat containing 58 2 2
MIRT680401 OXA1L OXA1L, mitochondrial inner membrane protein 2 2
MIRT683911 PSMB9 proteasome subunit beta 9 2 2
MIRT684183 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684238 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT684284 CDK9 cyclin dependent kinase 9 2 2
MIRT685411 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686260 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT688250 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688327 FAM151B family with sequence similarity 151 member B 2 2
MIRT688747 CNDP1 carnosine dipeptidase 1 2 2
MIRT689040 ANGPTL3 angiopoietin like 3 2 2
MIRT692525 PARD3 par-3 family cell polarity regulator 2 2
MIRT692984 LGSN lengsin, lens protein with glutamine synthetase domain 2 2
MIRT699866 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT699877 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT700840 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT701538 NCKAP1 NCK associated protein 1 2 2
MIRT703683 FAM189B family with sequence similarity 189 member B 2 2
MIRT708555 SPA17 sperm autoantigenic protein 17 2 2
MIRT708579 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT708721 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT708984 CABP4 calcium binding protein 4 2 2
MIRT709195 SAPCD2 suppressor APC domain containing 2 2 2
MIRT709679 PCDH17 protocadherin 17 2 2
MIRT709962 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT710173 MTRF1L mitochondrial translational release factor 1 like 2 2
MIRT710329 STK40 serine/threonine kinase 40 2 2
MIRT710532 TMEM201 transmembrane protein 201 2 2
MIRT710628 ASB7 ankyrin repeat and SOCS box containing 7 2 2
MIRT711037 RNF187 ring finger protein 187 2 2
MIRT711227 RETSAT retinol saturase 2 2
MIRT711418 RAB3C RAB3C, member RAS oncogene family 2 2
MIRT711469 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT711636 PEBP1 phosphatidylethanolamine binding protein 1 2 2
MIRT711658 RAB21 RAB21, member RAS oncogene family 2 2
MIRT711704 GMPR guanosine monophosphate reductase 2 2
MIRT711924 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT712061 ZBTB34 zinc finger and BTB domain containing 34 2 2
MIRT712094 TMEM218 transmembrane protein 218 2 2
MIRT712541 CYB561D1 cytochrome b561 family member D1 2 2
MIRT714480 TBL2 transducin beta like 2 2 2
MIRT716323 SIGLEC10 sialic acid binding Ig like lectin 10 2 2
MIRT716750 C19orf24 chromosome 19 open reading frame 24 2 2
MIRT717014 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT717162 SHB SH2 domain containing adaptor protein B 2 2
MIRT717369 EDN2 endothelin 2 2 2
MIRT717481 PDE4DIP phosphodiesterase 4D interacting protein 2 2
MIRT718080 CLIC5 chloride intracellular channel 5 2 2
MIRT718545 PIGQ phosphatidylinositol glycan anchor biosynthesis class Q 2 2
MIRT718835 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT718864 LRSAM1 leucine rich repeat and sterile alpha motif containing 1 2 2
MIRT719149 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT719687 ALDH1L2 aldehyde dehydrogenase 1 family member L2 2 2
MIRT719780 ZNF236 zinc finger protein 236 2 2
MIRT719859 KLF2 Kruppel like factor 2 2 2
MIRT720496 TMEM178B transmembrane protein 178B 2 2
MIRT720804 NUDT5 nudix hydrolase 5 2 2
MIRT720944 PPP1R3E protein phosphatase 1 regulatory subunit 3E 2 2
MIRT721344 LIF LIF, interleukin 6 family cytokine 2 2
MIRT721805 GRM1 glutamate metabotropic receptor 1 2 2
MIRT721924 LINGO2 leucine rich repeat and Ig domain containing 2 2 2
MIRT722429 HRNR hornerin 2 2
MIRT723971 GPR146 G protein-coupled receptor 146 2 2
MIRT724225 ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 2 2
MIRT724272 HMGCLL1 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 2 2
MIRT724659 PXDN peroxidasin 2 2
MIRT725282 OSTM1 osteopetrosis associated transmembrane protein 1 2 2
MIRT725434 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT725604 CAPN6 calpain 6 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-660 4-hydroxynonenal NULL 5283344 Microarray human leukemic HL-60 cell 19022373 2009 up-regulated
miR-660 Vorinostat (SAHA) approved 5311 Microarray A549 human non-small cell lung cancer cells 19513533 2009 up-regulated
miR-660 Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-660 Vitamin D3 approved 5280795 Quantitative real-time PCR Plasma 22594500 2012 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-660 Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-mir-660 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-660 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-660 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-mir-660 Cisplatin 5460033 NSC119875 approved resistant cell line (KYSE)
hsa-mir-660 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-mir-660 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-660 Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)
hsa-miR-660-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-660-3p Sorafenib 216239 NSC747971 approved sensitive Low Hepatocellular Carcinoma cell line (HepG2)
hsa-miR-660-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-660-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-660-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-660-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-660-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

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