pre-miRNA Information
pre-miRNA hsa-mir-4433a   
Genomic Coordinates chr2: 64340759 - 64340839
Description Homo sapiens miR-4433a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4433a-3p
Sequence 51| ACAGGAGUGGGGGUGGGACAU |71
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs751480515 9 dbSNP
rs557760377 15 dbSNP
rs1479580865 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GRAP2   
Synonyms GADS, GRAP-2, GRB2L, GRBLG, GRID, GRPL, GrbX, Grf40, Mona, P38
Description GRB2-related adaptor protein 2
Transcript NM_004810   
Expression
Putative miRNA Targets on GRAP2
3'UTR of GRAP2
(miRNA target sites are highlighted)
>GRAP2|NM_004810|3'UTR
   1 ACTCTTCAGGGGACAGAAGCTTTTTGTCTGGAGCTGCCCACAAGAAAGAGGGCAAGGAAAAAAGGCTGGACTCCATGACT
  81 ATATATACATACATCTATCTACATCTGCCTGTGTACACACACAACTTTTTATACTAGTAATTTATTGGCAATTGGGCTGG
 161 TAATTAGTTGATGCAAAAGGGAACTCAGGTGGAGAATAATATTGACACTTGCTTTTCTGCCCCCCTCAGGGGTGTGTGGA
 241 AGGCAGTGGGGGAGTTGGGAGGGGGGCAGGGAAATGAAATGGAGTTTTGTCCTGGCCTTCAGCTGTCACTGCTTCCTCCT
 321 TGTCTTGGGAATTTTCACGGAGAACAGCTAAGCAGAGACCACACCTCGGCACTGGACACAGAACAACAGGGTGGGGTTGA
 401 ACTTGGTGGGGCACGTTCTAGCTGACCTGCAAGCCCCGCTCACCTGGAGGGCTTGCAGAGCAGCTCTCCTCCTGTTCTCC
 481 AAGGGGTGGGCACTGTTGCATTAGGAATTAAGGTGCAGCCCAGTGCTGCGGGCAGCCAAGCGAGTCTGAGCGGGGATGTG
 561 AAGGCAGGACGGGGTTGGAGAGACCCTGCCTGTGCAAGGCTGGCCTCCTAGTCAACACCTAGCTGAGACATTCATCTCTG
 641 TTCAAATTAATATTCCTTGGGTCTTTCAAATGAATGTTTCAATGTGAGGAGCGAAGTACTGGGAAATCGAGGGATTTTCC
 721 ACAATCCCCAAGCAGCTTACTCAGTGGAACCTCTGTTTCCCCAGCTATGAAGGAAATAGCATCCTACATTCCGTAAAGTG
 801 CTTGAAGAAGCTCTAGCTGAGAATGCTGAATTTTACAGTCATTGTTTTATGGTTACAAGGGTATGTCTTCAGGGCTCTGT
 881 TCATTTTCCCTCTTGATTTTCTCTTTTGAAGATGCCTTGCCCAGTGGCATGGAAAGAAGCCCACTTGATGATAGGAGCCT
 961 GACTATGAATTGATTGACTAAACATGACCCCAGGTGGAAGCTGGCTTTGACACCAGCTTCCTGTTCAGTCTGACCACTGC
1041 TGTCCTCCTGCTGCCCAAGAGTTGCACCTGGAGCAAGGAACCCCACCATGGCTGTCGCTCTCCATCCCATCACGCTAGAA
1121 TCATGTGTCCAAGGGCTCACTCTGGAGGTGCACAGCACAGGTCAGCCTGGCCAGGGGCGAAGGAGACAGTAGAGAGGAAG
1201 CTCAGGGCCTTAGGGGAGGCCGGGTGCAAACCCGTTCTGCACCAAGTGCACTCGGAGTTTGTGGGTATGGGTGTGTACCC
1281 CTGCAGGTGTGCACATGTGTGCTTGCACGCACATATTTGTGCACTCCTGTGTGTATACATGTGTGCTTGTGTATGCATAT
1361 GTGTGCATTCCTGCATGTGTGGACATGTGCGTGCATGCATCTGTGTGTCTGTGTGTGTGCTGAGACAGGAAAGGGGGTGA
1441 AAGTGTTGGTGAGGGAGCCTGGAAGTTTTCTCTTCCCCAACCTCTCTTGCTCTAAGGAGGGATGGGGTTGGGGGCAGCCG
1521 TTATTGAAGGTGATCGGAGAAGAAAGATTTTCTGACTCAGAAGTGACTGCCAGTGTAGCACAAGCAGTGTCCCTTGTGAC
1601 TGTGATTCTACAGTTCTCTGATCCTCATGTTTCCTTTAGAGGAAAGAGGAAAAAAGGAACTCTGTGGTGGGTATTGGGAG
1681 GGAAAAGAAAATAGCCTGGTGGAGGCAGGAGGGAGTCGAGTGTGAGTAAGGAGCACCTGCAGCTTTTGGAAGTGAAAGCA
1761 GAGAGAGGGAAAGGTAGCTAAGACATCCAGGAGGATCAAGGGGCAGCGTGAGAGGCACAGGGGGAGGAAAGGGAGAGGGT
1841 GAGTGGGGCCAGGGAAGAGAACGGTGTGGAGTTGGTGGGCAGATGGTGCAGGAGGAGGGCTGGGCAGTGGGGAGAGGAAG
1921 AATCAGAGCAGAGAAACCGCTGCTGCGGAAGGCAGGGAGCAAAGAAGCATAAGGAAAAGAACAGGAGAAAGAACAAAGGC
2001 AGAGAAGACCTCCTCAGCTATTTTGGTGCTAGGTAATGTGAAATGCTGCAGTAAATAAAAGCCATAAGTAATGTTTGATT
2081 TTACAGTATTTACAAACCATATGCTTTAAACAGCCCACAAACTCCATCCAGTTGTCTGATGATGTGGGAGGACCAGCTCT
2161 AGTTAGACGGAGGTATGTGATTCGATTCTGGTGGAGACTTTGTGCCTTGAAAGGCTTCTCAGGAAAGCAGTAATAAAACA
2241 AAGTGTCCTTGTTTGGCC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uacaggguggggGUGAGGACa 5'
                      |||||||| 
Target 5' cacatatttgtgCACTCCTGt 3'
1310 - 1330 145.00 -14.80
2
miRNA  3' uaCAGGGUGGG--GGUGAGGACa 5'
            ||:| ::|:  ||||| ||| 
Target 5' ctGTTCAGTCTGACCACTGCTGt 3'
1021 - 1043 129.00 -18.90
3
miRNA  3' uacaggguggggGUGAGGACa 5'
                      ||:||||| 
Target 5' tgcatatgtgtgCATTCCTGc 3'
1354 - 1374 129.00 -11.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30705877 48 COSMIC
COSN30148511 49 COSMIC
COSN30537801 49 COSMIC
COSN30118284 54 COSMIC
COSN31508460 69 COSMIC
COSN31512353 70 COSMIC
COSN31512285 74 COSMIC
COSN19269178 694 COSMIC
COSN16453004 1103 COSMIC
COSN8010716 1134 COSMIC
COSN27636202 1274 COSMIC
COSN21140833 1723 COSMIC
COSN1262130 1760 COSMIC
COSN1262131 1822 COSMIC
COSN2495209 2124 COSMIC
COSN22411618 2600 COSMIC
COSN29938124 2632 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1053131682 4 dbSNP
rs768847639 8 dbSNP
rs777202273 9 dbSNP
rs762187661 13 dbSNP
rs760334119 14 dbSNP
rs770449809 16 dbSNP
rs773890309 19 dbSNP
rs759041140 39 dbSNP
rs1284328401 40 dbSNP
rs917283700 41 dbSNP
rs182893461 42 dbSNP
rs752286200 47 dbSNP
rs760521133 49 dbSNP
rs764977193 50 dbSNP
rs377755526 51 dbSNP
rs1416664384 52 dbSNP
rs34410036 56 dbSNP
rs986370358 64 dbSNP
rs537029404 67 dbSNP
rs1393544464 71 dbSNP
rs555105080 74 dbSNP
rs1393121441 76 dbSNP
rs1417006149 82 dbSNP
rs186855841 84 dbSNP
rs1163943426 86 dbSNP
rs906020051 92 dbSNP
rs1388560536 94 dbSNP
rs1190680706 98 dbSNP
rs1465507845 103 dbSNP
rs1219791785 121 dbSNP
rs1453874322 123 dbSNP
rs1291168246 130 dbSNP
rs192909780 132 dbSNP
rs552706125 133 dbSNP
rs1402341848 134 dbSNP
rs1042913204 150 dbSNP
rs577403031 152 dbSNP
rs1291614332 153 dbSNP
rs1326170620 156 dbSNP
rs41304433 160 dbSNP
rs1328037918 173 dbSNP
rs1055636031 178 dbSNP
rs1368862212 190 dbSNP
rs1170547602 193 dbSNP
rs184893139 199 dbSNP
rs993537826 207 dbSNP
rs751659617 211 dbSNP
rs1060824 218 dbSNP
rs146500247 220 dbSNP
rs1357987360 225 dbSNP
rs1014218468 226 dbSNP
rs1189872404 228 dbSNP
rs1479181742 228 dbSNP
rs1290380417 231 dbSNP
rs1488584465 233 dbSNP
rs1205157172 237 dbSNP
rs1482352328 238 dbSNP
rs1015312527 243 dbSNP
rs1205212324 249 dbSNP
rs1311279814 250 dbSNP
rs536660482 251 dbSNP
rs1220748646 258 dbSNP
rs543764311 259 dbSNP
rs561959406 263 dbSNP
rs529341747 267 dbSNP
rs547919941 268 dbSNP
rs1407986520 269 dbSNP
rs1442999493 271 dbSNP
rs1008634550 281 dbSNP
rs1372308993 293 dbSNP
rs147575510 296 dbSNP
rs1027854493 314 dbSNP
rs755308630 316 dbSNP
rs1358826865 319 dbSNP
rs1361178791 319 dbSNP
rs953516307 319 dbSNP
rs986417799 320 dbSNP
rs1422099643 322 dbSNP
rs1019208180 325 dbSNP
rs1471918591 332 dbSNP
rs1254540063 339 dbSNP
rs781507441 340 dbSNP
rs1384838010 341 dbSNP
rs1482609288 347 dbSNP
rs1032855489 348 dbSNP
rs1312400855 362 dbSNP
rs559928064 363 dbSNP
rs533562772 368 dbSNP
rs1288856681 370 dbSNP
rs1392050447 372 dbSNP
rs1378442791 375 dbSNP
rs989175625 376 dbSNP
rs917250926 378 dbSNP
rs1407070810 381 dbSNP
rs978906185 385 dbSNP
rs1313741001 387 dbSNP
rs1414852648 388 dbSNP
rs950126078 391 dbSNP
rs937178061 396 dbSNP
rs980166415 403 dbSNP
rs927380880 407 dbSNP
rs189395905 408 dbSNP
rs949945597 415 dbSNP
rs1330876930 416 dbSNP
rs748548250 432 dbSNP
rs1241656106 438 dbSNP
rs570348223 439 dbSNP
rs1036387152 440 dbSNP
rs1397817904 444 dbSNP
rs1383826717 447 dbSNP
rs1038557036 448 dbSNP
rs1258934466 449 dbSNP
rs1433351246 453 dbSNP
rs1485501850 455 dbSNP
rs60628820 456 dbSNP
rs61578612 457 dbSNP
rs1457890276 458 dbSNP
rs78790084 460 dbSNP
rs1183187146 467 dbSNP
rs770012315 472 dbSNP
rs1166335123 479 dbSNP
rs1444664208 480 dbSNP
rs571203870 489 dbSNP
rs1007741433 492 dbSNP
rs1017277483 518 dbSNP
rs1248466139 526 dbSNP
rs1208985137 527 dbSNP
rs1487481496 528 dbSNP
rs1267089335 529 dbSNP
rs1019095883 530 dbSNP
rs1363790416 531 dbSNP
rs900268147 538 dbSNP
rs1405273426 543 dbSNP
rs1466991760 547 dbSNP
rs1174690379 548 dbSNP
rs145298353 551 dbSNP
rs192383952 553 dbSNP
rs1367598352 558 dbSNP
rs538429007 559 dbSNP
rs956102241 569 dbSNP
rs988734941 571 dbSNP
rs1424751591 572 dbSNP
rs1369473750 574 dbSNP
rs367953876 575 dbSNP
rs1450986494 579 dbSNP
rs1373247087 581 dbSNP
rs1197930428 585 dbSNP
rs1431172787 595 dbSNP
rs535209883 602 dbSNP
rs1010216448 609 dbSNP
rs971400266 614 dbSNP
rs980112415 617 dbSNP
rs1335732629 623 dbSNP
rs927330070 644 dbSNP
rs1203076647 646 dbSNP
rs374748515 647 dbSNP
rs556751672 660 dbSNP
rs1344624474 693 dbSNP
rs974187515 694 dbSNP
rs1233004485 705 dbSNP
rs575467130 709 dbSNP
rs184812078 710 dbSNP
rs991299432 714 dbSNP
rs1448440093 715 dbSNP
rs1305672021 717 dbSNP
rs1051330269 720 dbSNP
rs891383876 723 dbSNP
rs1304216498 725 dbSNP
rs1396781002 729 dbSNP
rs949997824 741 dbSNP
rs754289888 747 dbSNP
rs1036678058 748 dbSNP
rs1257578642 752 dbSNP
rs1379207308 754 dbSNP
rs1321092635 756 dbSNP
rs919306825 757 dbSNP
rs944340089 761 dbSNP
rs755437241 764 dbSNP
rs889219553 765 dbSNP
rs367746002 774 dbSNP
rs1459253691 776 dbSNP
rs573942548 777 dbSNP
rs541483913 784 dbSNP
rs1175612356 787 dbSNP
rs1007626720 793 dbSNP
rs9611236 794 dbSNP
rs999895927 799 dbSNP
rs1335900923 804 dbSNP
rs1332910227 808 dbSNP
rs1393973136 813 dbSNP
rs1403870131 822 dbSNP
rs1176935821 825 dbSNP
rs533501595 826 dbSNP
rs1033205741 836 dbSNP
rs1021628008 837 dbSNP
rs868819929 841 dbSNP
rs1161201829 857 dbSNP
rs1470470173 862 dbSNP
rs749530364 862 dbSNP
rs77233714 864 dbSNP
rs556653844 871 dbSNP
rs1469647782 875 dbSNP
rs1440940816 876 dbSNP
rs1245143973 878 dbSNP
rs1204723549 884 dbSNP
rs1032615450 885 dbSNP
rs773914587 891 dbSNP
rs1400654230 893 dbSNP
rs563753623 899 dbSNP
rs1351995070 901 dbSNP
rs1463148786 908 dbSNP
rs1241941085 913 dbSNP
rs531191539 917 dbSNP
rs1341920306 927 dbSNP
rs1336919139 928 dbSNP
rs1434101561 930 dbSNP
rs1386272340 941 dbSNP
rs1295953120 950 dbSNP
rs1371936170 955 dbSNP
rs1412926052 956 dbSNP
rs1387307556 959 dbSNP
rs1162762207 963 dbSNP
rs549423288 966 dbSNP
rs1303387324 975 dbSNP
rs958470418 981 dbSNP
rs1343528326 985 dbSNP
rs1024196768 990 dbSNP
rs1464600373 992 dbSNP
rs1246621429 1002 dbSNP
rs1218344203 1012 dbSNP
rs370614311 1013 dbSNP
rs971311383 1018 dbSNP
rs745373209 1024 dbSNP
rs1360895139 1027 dbSNP
rs779127534 1028 dbSNP
rs1001497998 1031 dbSNP
rs1320284951 1038 dbSNP
rs1202611332 1043 dbSNP
rs1271757793 1051 dbSNP
rs1034349573 1076 dbSNP
rs962732138 1078 dbSNP
rs974134266 1084 dbSNP
rs971633042 1086 dbSNP
rs75696647 1088 dbSNP
rs919178101 1090 dbSNP
rs930550646 1092 dbSNP
rs1049548862 1097 dbSNP
rs1267462197 1098 dbSNP
rs951548592 1101 dbSNP
rs1246646821 1103 dbSNP
rs987380723 1109 dbSNP
rs577593575 1110 dbSNP
rs1291931881 1112 dbSNP
rs774940980 1114 dbSNP
rs540172555 1115 dbSNP
rs1274606093 1123 dbSNP
rs921591141 1123 dbSNP
rs1276404948 1124 dbSNP
rs1366727547 1126 dbSNP
rs760552236 1133 dbSNP
rs1406746293 1141 dbSNP
rs138011 1142 dbSNP
rs891552640 1143 dbSNP
rs904120285 1148 dbSNP
rs1429136267 1154 dbSNP
rs1010037845 1161 dbSNP
rs1172720996 1167 dbSNP
rs1410744136 1171 dbSNP
rs1363697288 1173 dbSNP
rs1189820438 1177 dbSNP
rs1045979357 1179 dbSNP
rs570973837 1180 dbSNP
rs1032665915 1184 dbSNP
rs907075126 1195 dbSNP
rs1180842063 1204 dbSNP
rs35940792 1213 dbSNP
rs1481746921 1217 dbSNP
rs1234111482 1218 dbSNP
rs1204849557 1222 dbSNP
rs1001439334 1223 dbSNP
rs368410924 1233 dbSNP
rs1225074260 1234 dbSNP
rs1363765202 1235 dbSNP
rs373170381 1247 dbSNP
rs1409297295 1248 dbSNP
rs1371369535 1250 dbSNP
rs1299955374 1254 dbSNP
rs995925986 1255 dbSNP
rs1358772085 1256 dbSNP
rs756851733 1257 dbSNP
rs545686059 1264 dbSNP
rs1471126545 1266 dbSNP
rs1430613472 1276 dbSNP
rs1159159920 1278 dbSNP
rs971138762 1284 dbSNP
rs972322477 1285 dbSNP
rs1177239586 1290 dbSNP
rs9607676 1303 dbSNP
rs1026124780 1309 dbSNP
rs1235334765 1310 dbSNP
rs1223943199 1311 dbSNP
rs776466675 1316 dbSNP
rs1267257491 1319 dbSNP
rs984694407 1324 dbSNP
rs1289612997 1327 dbSNP
rs910590330 1330 dbSNP
rs145144717 1332 dbSNP
rs139007738 1340 dbSNP
rs1454776341 1342 dbSNP
rs912720133 1348 dbSNP
rs964210991 1352 dbSNP
rs1320280756 1362 dbSNP
rs1452305632 1379 dbSNP
rs142274066 1380 dbSNP
rs1159221683 1385 dbSNP
rs1186266625 1386 dbSNP
rs145635816 1391 dbSNP
rs6001715 1392 dbSNP
rs935642731 1396 dbSNP
rs1444856400 1400 dbSNP
rs573119797 1401 dbSNP
rs1247239892 1417 dbSNP
rs1382780231 1421 dbSNP
rs1423966286 1422 dbSNP
rs1298680419 1423 dbSNP
rs1206554952 1424 dbSNP
rs1486826183 1426 dbSNP
rs1261190372 1427 dbSNP
rs1216594730 1430 dbSNP
rs1321265600 1433 dbSNP
rs936951694 1449 dbSNP
rs1248503983 1450 dbSNP
rs1383756128 1452 dbSNP
rs1297358269 1454 dbSNP
rs1054538151 1459 dbSNP
rs1387789837 1464 dbSNP
rs1289899932 1466 dbSNP
rs111987832 1471 dbSNP
rs1012547021 1473 dbSNP
rs541422540 1476 dbSNP
rs1164915790 1479 dbSNP
rs189490468 1481 dbSNP
rs1190789678 1488 dbSNP
rs1045519831 1498 dbSNP
rs993244896 1500 dbSNP
rs1026596182 1502 dbSNP
rs1190602158 1508 dbSNP
rs1487452079 1510 dbSNP
rs998935177 1510 dbSNP
rs1289734257 1513 dbSNP
rs1231377234 1514 dbSNP
rs1035719267 1515 dbSNP
rs143115126 1515 dbSNP
rs578125964 1518 dbSNP
rs138012 1521 dbSNP
rs1274115955 1523 dbSNP
rs1225707558 1525 dbSNP
rs1313052674 1536 dbSNP
rs563867686 1537 dbSNP
rs1344138975 1539 dbSNP
rs181478623 1556 dbSNP
rs745323961 1558 dbSNP
rs1240941787 1559 dbSNP
rs898421208 1564 dbSNP
rs1017535673 1573 dbSNP
rs148097685 1574 dbSNP
rs995479323 1578 dbSNP
rs561405331 1585 dbSNP
rs1165858673 1588 dbSNP
rs1288837320 1600 dbSNP
rs1445765647 1601 dbSNP
rs1373480809 1603 dbSNP
rs1026061229 1604 dbSNP
rs1215589570 1605 dbSNP
rs1201698105 1614 dbSNP
rs751702277 1616 dbSNP
rs1483374336 1619 dbSNP
rs976098728 1623 dbSNP
rs1341713612 1624 dbSNP
rs1252302974 1629 dbSNP
rs923277633 1635 dbSNP
rs1322062062 1637 dbSNP
rs1185007530 1649 dbSNP
rs1008717322 1651 dbSNP
rs1240748059 1654 dbSNP
rs1349399479 1658 dbSNP
rs945480158 1666 dbSNP
rs1019681798 1668 dbSNP
rs978192508 1671 dbSNP
rs755040984 1672 dbSNP
rs1467982062 1678 dbSNP
rs1410146125 1679 dbSNP
rs975567891 1681 dbSNP
rs528774439 1682 dbSNP
rs1158110975 1699 dbSNP
rs1177146707 1703 dbSNP
rs1472218244 1714 dbSNP
rs1307770284 1719 dbSNP
rs1179718137 1722 dbSNP
rs1359486779 1725 dbSNP
rs1032522244 1727 dbSNP
rs958535563 1730 dbSNP
rs1251454663 1734 dbSNP
rs573098071 1737 dbSNP
rs1460209772 1752 dbSNP
rs988451586 1764 dbSNP
rs916846290 1765 dbSNP
rs1447703354 1778 dbSNP
rs115372955 1783 dbSNP
rs1277298164 1785 dbSNP
rs1240498130 1795 dbSNP
rs1349174232 1802 dbSNP
rs1333010395 1808 dbSNP
rs1045397907 1809 dbSNP
rs1408104627 1811 dbSNP
rs1279817520 1815 dbSNP
rs1337127162 1817 dbSNP
rs945755156 1822 dbSNP
rs981164390 1823 dbSNP
rs1156919627 1833 dbSNP
rs1471167722 1839 dbSNP
rs1364605666 1844 dbSNP
rs570912711 1847 dbSNP
rs1183292709 1852 dbSNP
rs1442983132 1854 dbSNP
rs186049338 1860 dbSNP
rs767881637 1863 dbSNP
rs1460589549 1864 dbSNP
rs928381696 1866 dbSNP
rs550393976 1867 dbSNP
rs1282694268 1872 dbSNP
rs937123090 1874 dbSNP
rs1055635665 1884 dbSNP
rs1313715177 1890 dbSNP
rs1047471821 1894 dbSNP
rs1384508185 1895 dbSNP
rs1315513341 1897 dbSNP
rs1234048574 1898 dbSNP
rs1324633386 1899 dbSNP
rs887485584 1900 dbSNP
rs898369030 1906 dbSNP
rs1401215884 1911 dbSNP
rs1385821821 1926 dbSNP
rs1468567293 1929 dbSNP
rs1423008521 1938 dbSNP
rs568980708 1939 dbSNP
rs536037852 1940 dbSNP
rs1240712662 1943 dbSNP
rs752812220 1947 dbSNP
rs554784218 1948 dbSNP
rs1219575722 1953 dbSNP
rs1470859018 1956 dbSNP
rs1173988997 1958 dbSNP
rs1008248459 1960 dbSNP
rs1291978932 1961 dbSNP
rs1019630787 1975 dbSNP
rs1030779971 1983 dbSNP
rs189251304 1986 dbSNP
rs1334013258 1988 dbSNP
rs1330407182 1993 dbSNP
rs1302654227 1997 dbSNP
rs1403120032 2006 dbSNP
rs1442144858 2009 dbSNP
rs978456731 2010 dbSNP
rs1164517944 2013 dbSNP
rs1276011096 2016 dbSNP
rs749656331 2033 dbSNP
rs925397137 2038 dbSNP
rs958088049 2044 dbSNP
rs1476046892 2049 dbSNP
rs1262848269 2050 dbSNP
rs1268744037 2056 dbSNP
rs990968959 2064 dbSNP
rs1490678329 2065 dbSNP
rs1322408981 2066 dbSNP
rs1195982402 2072 dbSNP
rs1032470254 2078 dbSNP
rs1274892483 2085 dbSNP
rs1305368234 2085 dbSNP
rs916730317 2089 dbSNP
rs1322747792 2092 dbSNP
rs958265468 2094 dbSNP
rs1281223437 2099 dbSNP
rs1225259715 2100 dbSNP
rs534104293 2114 dbSNP
rs988786616 2123 dbSNP
rs1294164366 2129 dbSNP
rs1021223741 2139 dbSNP
rs967419084 2144 dbSNP
rs1435623771 2146 dbSNP
rs757815284 2154 dbSNP
rs1269607658 2159 dbSNP
rs779338078 2169 dbSNP
rs928329470 2170 dbSNP
rs937069011 2174 dbSNP
rs745391560 2178 dbSNP
rs1428255992 2184 dbSNP
rs562051904 2185 dbSNP
rs1047814343 2191 dbSNP
rs919740357 2192 dbSNP
rs1169819968 2202 dbSNP
rs1176082583 2203 dbSNP
rs181193443 2214 dbSNP
rs1409494365 2221 dbSNP
rs544301916 2229 dbSNP
rs900327811 2231 dbSNP
rs1460757591 2232 dbSNP
rs1261007328 2234 dbSNP
rs887045525 2249 dbSNP
rs775234375 2252 dbSNP
rs1030249990 2259 dbSNP
rs1403568226 2262 dbSNP
rs1371473466 2264 dbSNP
rs966992764 2265 dbSNP
rs1283080195 2267 dbSNP
rs562091251 2268 dbSNP
rs1230045197 2272 dbSNP
rs117854879 2280 dbSNP
rs1471259626 2283 dbSNP
rs1337041116 2285 dbSNP
rs1194795676 2287 dbSNP
rs1360199392 2293 dbSNP
rs958140407 2294 dbSNP
rs1291790933 2295 dbSNP
rs1409525484 2299 dbSNP
rs557151311 2306 dbSNP
rs1490820568 2309 dbSNP
rs1041027565 2310 dbSNP
rs899883930 2311 dbSNP
rs749191408 2316 dbSNP
rs970868951 2317 dbSNP
rs1461730957 2321 dbSNP
rs1371622071 2326 dbSNP
rs982649856 2336 dbSNP
rs376009422 2337 dbSNP
rs544681346 2338 dbSNP
rs1387123867 2339 dbSNP
rs1053828303 2342 dbSNP
rs1313400817 2343 dbSNP
rs983162244 2344 dbSNP
rs1303130954 2346 dbSNP
rs5750889 2356 dbSNP
rs776357185 2357 dbSNP
rs1423638920 2363 dbSNP
rs1382955050 2365 dbSNP
rs1316658581 2367 dbSNP
rs1185214582 2373 dbSNP
rs1444944966 2379 dbSNP
rs1009749854 2390 dbSNP
rs1184773930 2391 dbSNP
rs1021590736 2394 dbSNP
rs1226161588 2400 dbSNP
rs141870963 2401 dbSNP
rs1360918060 2402 dbSNP
rs1289774665 2408 dbSNP
rs1003834761 2412 dbSNP
rs1243111780 2424 dbSNP
rs1035345730 2425 dbSNP
rs933173409 2436 dbSNP
rs1291000079 2440 dbSNP
rs1351306609 2442 dbSNP
rs1298305787 2443 dbSNP
rs186489864 2457 dbSNP
rs991218303 2459 dbSNP
rs1446668910 2461 dbSNP
rs919706630 2464 dbSNP
rs1458088301 2465 dbSNP
rs902448017 2468 dbSNP
rs999833371 2470 dbSNP
rs761642378 2476 dbSNP
rs982646022 2495 dbSNP
rs908418248 2496 dbSNP
rs540532395 2514 dbSNP
rs1490225311 2516 dbSNP
rs943955409 2518 dbSNP
rs893802493 2522 dbSNP
rs1012326199 2526 dbSNP
rs1488911546 2532 dbSNP
rs1251135890 2537 dbSNP
rs1442896216 2539 dbSNP
rs374432333 2540 dbSNP
rs970752926 2549 dbSNP
rs562990072 2553 dbSNP
rs921252077 2554 dbSNP
rs531977501 2558 dbSNP
rs190896361 2562 dbSNP
rs1304412835 2571 dbSNP
rs150641114 2574 dbSNP
rs1395271648 2575 dbSNP
rs984770238 2578 dbSNP
rs908916667 2585 dbSNP
rs1010109754 2588 dbSNP
rs941677571 2592 dbSNP
rs1042557936 2593 dbSNP
rs1427335647 2605 dbSNP
rs1201036732 2606 dbSNP
rs1250014309 2607 dbSNP
rs1384654232 2610 dbSNP
rs1194443588 2611 dbSNP
rs1459423848 2619 dbSNP
rs1259095454 2633 dbSNP
rs974370634 2634 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uacaggguGGGGGUGAGGACa 5'
                  |::  ||||||| 
Target 5' agggugguCUUGAACUCCUGa 3'
2 - 22
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000344138.4 | 3UTR | CAGGGUGGUCUUGAACUCCUGACCUCAGGUGAUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
256 hsa-miR-4433a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088097 SEPT2 septin 2 2 2
MIRT143134 MGRN1 mahogunin ring finger 1 2 2
MIRT153912 NCOA3 nuclear receptor coactivator 3 2 2
MIRT154894 GNAS GNAS complex locus 2 4
MIRT200996 ZNF805 zinc finger protein 805 2 2
MIRT215729 C5ORF51 chromosome 5 open reading frame 51 2 10
MIRT235593 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT263250 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT317951 CDC5L cell division cycle 5 like 2 4
MIRT325572 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT354739 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT444552 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 4
MIRT446978 SUSD5 sushi domain containing 5 2 2
MIRT451036 ZNF610 zinc finger protein 610 2 2
MIRT451596 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT452025 NLRP6 NLR family pyrin domain containing 6 2 2
MIRT452594 CA6 carbonic anhydrase 6 2 2
MIRT452768 TCEA3 transcription elongation factor A3 2 4
MIRT452959 ZNF844 zinc finger protein 844 2 2
MIRT453191 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453382 RHD Rh blood group D antigen 2 2
MIRT453685 CEBPD CCAAT/enhancer binding protein delta 2 2
MIRT455272 DDX39B DExD-box helicase 39B 2 8
MIRT455346 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT456494 SERAC1 serine active site containing 1 2 2
MIRT456585 NID1 nidogen 1 2 2
MIRT456888 DDA1 DET1 and DDB1 associated 1 2 2
MIRT457123 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT457852 ZNF324B zinc finger protein 324B 2 2
MIRT457987 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT459278 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT459625 SLC25A33 solute carrier family 25 member 33 2 2
MIRT459715 SGK494 uncharacterized serine/threonine-protein kinase SgK494 2 2
MIRT460057 RPL22L1 ribosomal protein L22 like 1 2 2
MIRT460182 UNK unkempt family zinc finger 2 6
MIRT460288 PDE11A phosphodiesterase 11A 2 2
MIRT460841 EGF epidermal growth factor 2 4
MIRT460860 TBC1D19 TBC1 domain family member 19 2 2
MIRT461519 EMC7 ER membrane protein complex subunit 7 2 2
MIRT461729 SLC27A1 solute carrier family 27 member 1 2 4
MIRT461821 SNAP23 synaptosome associated protein 23 2 2
MIRT462066 CCDC77 coiled-coil domain containing 77 2 4
MIRT462084 MSANTD2 Myb/SANT DNA binding domain containing 2 2 2
MIRT462508 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 10
MIRT464239 VCP valosin containing protein 2 2
MIRT465316 TRAF5 TNF receptor associated factor 5 2 2
MIRT466549 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467128 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 8
MIRT468091 SHCBP1 SHC binding and spindle associated 1 2 2
MIRT469630 RAD21 RAD21 cohesin complex component 2 6
MIRT471097 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472704 MYBL1 MYB proto-oncogene like 1 2 2
MIRT472830 MTMR10 myotubularin related protein 10 2 2
MIRT472872 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT472895 MTDH metadherin 2 2
MIRT473728 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT473859 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT474047 LONRF1 LON peptidase N-terminal domain and ring finger 1 2 2
MIRT474297 LAMC1 laminin subunit gamma 1 2 2
MIRT474658 KLF13 Kruppel like factor 13 2 2
MIRT475234 IKZF3 IKAROS family zinc finger 3 2 2
MIRT475500 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT475742 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT475793 HDGF heparin binding growth factor 2 2
MIRT477254 ERGIC2 ERGIC and golgi 2 2 2
MIRT478228 DDX52 DExD-box helicase 52 2 2
MIRT478393 DCTN5 dynactin subunit 5 2 2
MIRT478754 CS citrate synthase 2 2
MIRT478827 CRKL CRK like proto-oncogene, adaptor protein 2 4
MIRT480234 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT480597 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT484121 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT484689 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT486331 C11orf54 chromosome 11 open reading frame 54 2 4
MIRT488599 FAM3C family with sequence similarity 3 member C 2 8
MIRT488833 MRRF mitochondrial ribosome recycling factor 2 2
MIRT492523 RAB15 RAB15, member RAS oncogene family 2 4
MIRT493632 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT500026 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501075 SMAD7 SMAD family member 7 2 8
MIRT503094 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503336 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT505465 STMN1 stathmin 1 2 4
MIRT505726 SERTAD3 SERTA domain containing 3 2 4
MIRT509333 MS4A4A membrane spanning 4-domains A4A 2 2
MIRT509978 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 4
MIRT513068 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT513446 EMP1 epithelial membrane protein 1 2 6
MIRT513736 PSD3 pleckstrin and Sec7 domain containing 3 2 4
MIRT513996 CENPQ centromere protein Q 2 4
MIRT516538 MIXL1 Mix paired-like homeobox 2 2
MIRT517606 SAV1 salvador family WW domain containing protein 1 2 2
MIRT518064 CEP89 centrosomal protein 89 2 2
MIRT518119 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT518325 WDR92 WD repeat domain 92 2 2
MIRT519048 ABCB11 ATP binding cassette subfamily B member 11 2 2
MIRT520972 SPPL2A signal peptide peptidase like 2A 2 4
MIRT521359 RPL35A ribosomal protein L35a 2 2
MIRT523359 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT523801 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT524622 C7orf73 short transmembrane mitochondrial protein 1 2 2
MIRT525550 PHB2 prohibitin 2 2 4
MIRT529709 ZBTB49 zinc finger and BTB domain containing 49 2 2
MIRT531605 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT532387 UMPS uridine monophosphate synthetase 2 2
MIRT534468 SCD stearoyl-CoA desaturase 2 4
MIRT537546 ETNK1 ethanolamine kinase 1 2 2
MIRT541619 C11orf31 selenoprotein H 2 2
MIRT548380 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 4
MIRT549523 HDDC2 HD domain containing 2 2 2
MIRT549774 SOD2 superoxide dismutase 2 2 2
MIRT550578 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551498 CENPN centromere protein N 2 4
MIRT552301 ITGA3 integrin subunit alpha 3 2 2
MIRT555400 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT556399 LUC7L LUC7 like 2 2
MIRT557047 HOXB3 homeobox B3 2 2
MIRT558072 ERO1L endoplasmic reticulum oxidoreductase 1 alpha 1 2
MIRT559659 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT561239 ZNF354B zinc finger protein 354B 2 2
MIRT566899 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT568786 FAM120B family with sequence similarity 120B 2 2
MIRT574014 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT574885 Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 2 2
MIRT575243 Serping1 serine (or cysteine) peptidase inhibitor, clade G, member 1 2 2
MIRT576194 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576309 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576484 Lhx4 LIM homeobox protein 4 2 3
MIRT576646 Mill2 MHC I like leukocyte 2 1 1
MIRT576708 Kras Kirsten rat sarcoma viral oncogene homolog 2 2
MIRT576855 Socs6 suppressor of cytokine signaling 6 2 2
MIRT576950 Aldoa aldolase A, fructose-bisphosphate 2 2
MIRT617133 ZNF556 zinc finger protein 556 2 4
MIRT617928 ZNF783 zinc finger family member 783 2 2
MIRT618981 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT621100 SIX3 SIX homeobox 3 2 2
MIRT624537 BROX BRO1 domain and CAAX motif containing 2 2
MIRT625663 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT627059 DCTN6 dynactin subunit 6 2 2
MIRT628319 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT630859 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT632295 TMEM65 transmembrane protein 65 2 2
MIRT634115 ZNF207 zinc finger protein 207 2 2
MIRT634736 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT635655 NDST3 N-deacetylase and N-sulfotransferase 3 2 2
MIRT635772 PDCL3 phosducin like 3 2 2
MIRT635911 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT636365 OGFRL1 opioid growth factor receptor like 1 2 4
MIRT637251 GLRX2 glutaredoxin 2 2 2
MIRT638705 FZD4 frizzled class receptor 4 2 2
MIRT639640 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 2 2
MIRT639676 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT642267 SMIM17 small integral membrane protein 17 2 2
MIRT642372 ZNF581 zinc finger protein 581 2 2
MIRT643545 SLC25A17 solute carrier family 25 member 17 2 2
MIRT647994 PDE12 phosphodiesterase 12 2 2
MIRT649094 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT650993 ZNF770 zinc finger protein 770 2 2
MIRT651956 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT652977 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT654389 RBM12B RNA binding motif protein 12B 2 2
MIRT655637 OLFML2A olfactomedin like 2A 2 2
MIRT655729 NRXN3 neurexin 3 2 2
MIRT658171 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT660937 ACOX1 acyl-CoA oxidase 1 2 2
MIRT662112 CERKL ceramide kinase like 2 2
MIRT662302 MPV17L MPV17 mitochondrial inner membrane protein like 2 2
MIRT662993 TMEM59 transmembrane protein 59 2 2
MIRT663071 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT663704 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663864 MUC20 mucin 20, cell surface associated 2 2
MIRT665185 HAUS5 HAUS augmin like complex subunit 5 2 4
MIRT665402 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT665688 TNPO3 transportin 3 2 2
MIRT665795 TMEM170A transmembrane protein 170A 2 2
MIRT665847 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT666999 PDPN podoplanin 2 2
MIRT667598 LIPC lipase C, hepatic type 2 2
MIRT668576 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT670960 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT671187 ZNF891 zinc finger protein 891 2 2
MIRT671739 ZNF451 zinc finger protein 451 2 2
MIRT672745 ZNF585B zinc finger protein 585B 2 4
MIRT673446 ZNF583 zinc finger protein 583 2 2
MIRT679843 GPR75 G protein-coupled receptor 75 2 2
MIRT680556 ZNF584 zinc finger protein 584 2 2
MIRT680661 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT681285 RFC2 replication factor C subunit 2 2 2
MIRT683264 ZNF329 zinc finger protein 329 2 2
MIRT684519 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT685065 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685157 DTWD2 DTW domain containing 2 2 2
MIRT685168 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT685470 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT686001 NEK4 NIMA related kinase 4 2 2
MIRT687027 RNF24 ring finger protein 24 2 2
MIRT687543 MOB1B MOB kinase activator 1B 2 2
MIRT687592 MANEAL mannosidase endo-alpha like 2 2
MIRT687753 KIAA1328 KIAA1328 2 2
MIRT688050 GLUL glutamate-ammonia ligase 2 2
MIRT688374 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 2 2
MIRT688802 CBFA2T3 CBFA2/RUNX1 translocation partner 3 2 2
MIRT688957 ATXN3 ataxin 3 2 2
MIRT689281 C5AR2 complement component 5a receptor 2 2 2
MIRT689988 NNMT nicotinamide N-methyltransferase 2 2
MIRT689997 MMP17 matrix metallopeptidase 17 2 2
MIRT690014 LUZP2 leucine zipper protein 2 2 2
MIRT690161 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690379 ZSWIM7 zinc finger SWIM-type containing 7 2 2
MIRT690563 MICA MHC class I polypeptide-related sequence A 2 2
MIRT691891 EVC EvC ciliary complex subunit 1 2 2
MIRT693107 SCNM1 sodium channel modifier 1 2 2
MIRT693832 ZFP64 ZFP64 zinc finger protein 2 2
MIRT694105 ZNF446 zinc finger protein 446 2 2
MIRT694179 ZNF486 zinc finger protein 486 2 2
MIRT694475 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT694998 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT695031 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT695163 TCTN2 tectonic family member 2 2 2
MIRT695525 SLC25A34 solute carrier family 25 member 34 2 2
MIRT696067 ZNF264 zinc finger protein 264 2 2
MIRT696616 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT696661 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696705 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT697173 INMT indolethylamine N-methyltransferase 2 2
MIRT697303 ZNF652 zinc finger protein 652 2 2
MIRT697491 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT698657 TERF2 telomeric repeat binding factor 2 2 2
MIRT699042 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699185 SLX4IP SLX4 interacting protein 2 2
MIRT699598 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT700150 RNF115 ring finger protein 115 2 2
MIRT700720 PNO1 partner of NOB1 homolog 2 2
MIRT700870 PER2 period circadian clock 2 2 2
MIRT700912 PDXK pyridoxal kinase 2 2
MIRT701095 PAPOLG poly(A) polymerase gamma 2 2
MIRT701194 OTUD3 OTU deubiquitinase 3 2 2
MIRT702203 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT702272 LHX4 LIM homeobox 4 2 3
MIRT703125 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT703252 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT703262 GNL3L G protein nucleolar 3 like 2 2
MIRT703440 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704321 DCUN1D5 defective in cullin neddylation 1 domain containing 5 2 2
MIRT704393 CTSS cathepsin S 2 2
MIRT704483 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT704880 CCSER2 coiled-coil serine rich protein 2 2 2
MIRT704926 CCDC36 coiled-coil domain containing 36 2 2
MIRT705175 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT706561 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT707048 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT711497 PGD phosphogluconate dehydrogenase 2 2
MIRT716644 EPGN epithelial mitogen 2 2
MIRT720083 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT722288 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT725468 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4433a Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4433a Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-4433a Vincristine 5978 approved resistant cell line (W1)
hsa-mir-4433a Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4433a-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CIS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (mitochondrial RNA)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-4433a-3p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

Error report submission