pre-miRNA Information
pre-miRNA hsa-mir-629   
Genomic Coordinates chr15: 70079372 - 70079468
Synonyms MIRN629, hsa-mir-629, MIR629
Description Homo sapiens miR-629 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-629-3p
Sequence 61| GUUCUCCCAACGUAAGCCCAGC |82
Evidence Experimental
Experiments SAGE
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26582616 16 COSMIC
COSN26958009 18 COSMIC
COSN8407437 22 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1242457085 1 dbSNP
rs1344122972 2 dbSNP
rs557636399 8 dbSNP
rs1233555233 9 dbSNP
rs377379255 10 dbSNP
rs756998503 11 dbSNP
rs753617436 12 dbSNP
rs1455005717 13 dbSNP
rs1363921181 14 dbSNP
rs373092208 19 dbSNP
rs755974356 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
BKD83G miR-629 Safety Biomarker (SAF) Clinical/Experimental Data Expression Decrease Blood TaqMan OpenArray panels
Gene Information
Gene Symbol GANAB   
Synonyms G2AN, GIIA, GLUII, PKD3
Description glucosidase II alpha subunit
Transcript NM_198334   
Other Transcripts NM_198335   
Expression
Putative miRNA Targets on GANAB
3'UTR of GANAB
(miRNA target sites are highlighted)
>GANAB|NM_198334|3'UTR
   1 CCCAAGGGATGTTCTGGGTTAGGGGGAGGGAAGGGGAGCATTAGTGCTGAGAGATATTCTTTCTTCTGCCTTGGAGTTCG
  81 GCCCTCCCCAGACTTCACTTATGCTAGTCTAAGACCCAGATTCTGCCAACATTTGGGCAGGATGAGAGGGCTGACCCTGG
 161 GCTCCAAATTCCTCTTGTGATCTCCTCACCTCTCCCACTCCATTGATACCAACTCTTTCCCTTCATTCCCCCAACATCCT
 241 GTTGCTCTAACTGGAGCACATTCACTTACGAACACCAGGAAACCACAGGGCCCTTGTCGCCCCTTCTCTTTCCCTTATTT
 321 AGGAGCCCTGAACTCCCCCAGAGTCTATCCATTCATGCCTCTTGTATGTTGATGCCACTTCTTGGAAGAAGATGAGGGCA
 401 ATGAGTTAGGGCTCCTTTTCCCCTTCCCTCCCACCAGATTGCTCTCCCACCTTTCATTTCTTCCTCCAGGCTTTACTCCC
 481 CTTTTTATGCCCCACCGATACACTGGGACCACCCCTTACCCCGGACAGGATGAATGGATCAAAGGAGTGAGGTTGCTAAA
 561 GAACATCCTTTTCCCTCTCATTCTACCCTTTTCCTCTCCCCGATTCCTTGTAGAGCTGCTGCAATTCTTAGAGGGGCAGT
 641 TCTACCTCCTCTGTCCCTCGGCAGAAAGACGTTTCCACACCTCTTAGGGGATGCGCATTAAACTTCTTTTGCCCCCTTCT
 721 TGTCCCCTTTGAGGGGCACTTAAGATGGAGAAATCAGTTGTGGTTTCAGTGAATCATGGTCACCTGTATTTATTGCTAGG
 801 AGAAGCCTGAGGGTGGGGGGAGATGATCATGTGTGCTCGGGGTTGGCTGGAAGCCCTGGGTGGGGGGTTGGGGGAGGACT
 881 AATGGGGAGTCGGGGAATATTTGTGGGTATTTTTTTTACTTCCTCTTGGTTCCCAGCTGTGACACGTTTTGATCAAAGGA
 961 GAAACAATAAAGGGATAAACCATAAATAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgACCCGAAUGCAA--CCCUCUUg 5'
            ||||   : |||  |||||:| 
Target 5' ggTGGG---GGGTTGGGGGAGGAc 3'
859 - 879 135.00 -20.20
2
miRNA  3' cgaCCC--GAAUGC-AACCCUCUUg 5'
             |||  |||| | |  |||||| 
Target 5' gagGGGCACTTAAGAT--GGAGAAa 3'
731 - 753 128.00 -13.30
3
miRNA  3' cgACCCGAAU-GCAACCCUCUUg 5'
            ||  :||| :| | |||||| 
Target 5' ccTGTATTTATTGCTAGGAGAAg 3'
783 - 805 128.00 -9.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31558181 59 COSMIC
COSN30111219 69 COSMIC
COSN30111218 70 COSMIC
COSN30157191 89 COSMIC
COSN28862239 168 COSMIC
COSN25243852 269 COSMIC
COSN31553443 441 COSMIC
COSN30542812 463 COSMIC
COSN31592823 496 COSMIC
COSN21454057 549 COSMIC
COSN31597470 571 COSMIC
COSN5916174 695 COSMIC
COSN21395378 917 COSMIC
COSN18930450 925 COSMIC
COSN24490324 950 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1375986610 1 dbSNP
rs1330546453 2 dbSNP
rs1044641546 6 dbSNP
rs200956498 11 dbSNP
rs747948615 14 dbSNP
rs1404054243 16 dbSNP
rs765191082 22 dbSNP
rs752771425 23 dbSNP
rs765193755 27 dbSNP
rs1339896709 33 dbSNP
rs1175779135 34 dbSNP
rs759447048 36 dbSNP
rs1239302601 37 dbSNP
rs553565070 42 dbSNP
rs1181128954 44 dbSNP
rs753825555 46 dbSNP
rs1253696019 47 dbSNP
rs1208855944 48 dbSNP
rs1312344708 50 dbSNP
rs952041936 51 dbSNP
rs920885991 53 dbSNP
rs778797237 55 dbSNP
rs1203132672 56 dbSNP
rs1255391460 57 dbSNP
rs796525964 58 dbSNP
rs1191757140 62 dbSNP
rs1442499951 63 dbSNP
rs754829169 66 dbSNP
rs141471770 70 dbSNP
rs1169224427 71 dbSNP
rs1422660220 76 dbSNP
rs976850831 79 dbSNP
rs189567845 80 dbSNP
rs146543067 81 dbSNP
rs1432789706 86 dbSNP
rs1355366282 87 dbSNP
rs1317572183 98 dbSNP
rs1326735950 104 dbSNP
rs986046189 108 dbSNP
rs1031341434 113 dbSNP
rs536835261 114 dbSNP
rs968925124 115 dbSNP
rs1223171372 118 dbSNP
rs559615967 129 dbSNP
rs1328333905 131 dbSNP
rs1021882378 132 dbSNP
rs904179937 137 dbSNP
rs547099748 139 dbSNP
rs374003721 147 dbSNP
rs573683091 171 dbSNP
rs1284191546 172 dbSNP
rs779598404 180 dbSNP
rs1447901911 181 dbSNP
rs1010526508 187 dbSNP
rs891453680 188 dbSNP
rs1479889062 189 dbSNP
rs1050135407 191 dbSNP
rs1199769899 194 dbSNP
rs996757143 196 dbSNP
rs185154133 202 dbSNP
rs1402811966 205 dbSNP
rs1385605416 209 dbSNP
rs1321301335 219 dbSNP
rs1402421979 219 dbSNP
rs564470422 220 dbSNP
rs557002169 221 dbSNP
rs1284183222 226 dbSNP
rs907961710 227 dbSNP
rs749943092 228 dbSNP
rs1044201524 231 dbSNP
rs117685098 232 dbSNP
rs768066030 241 dbSNP
rs980787363 243 dbSNP
rs757819322 245 dbSNP
rs575855623 247 dbSNP
rs180937079 263 dbSNP
rs917472962 268 dbSNP
rs542383941 269 dbSNP
rs1180432079 271 dbSNP
rs1363916225 273 dbSNP
rs1238467909 287 dbSNP
rs551774837 292 dbSNP
rs929255748 298 dbSNP
rs1161659006 301 dbSNP
rs1199598831 302 dbSNP
rs992957435 316 dbSNP
rs1425077166 328 dbSNP
rs1334650684 329 dbSNP
rs1303947809 338 dbSNP
rs1271771205 339 dbSNP
rs1461084963 345 dbSNP
rs1393175940 347 dbSNP
rs1389939670 349 dbSNP
rs573076836 356 dbSNP
rs1336501857 357 dbSNP
rs944107950 364 dbSNP
rs1237676030 365 dbSNP
rs1352804024 366 dbSNP
rs1309853791 369 dbSNP
rs1031415130 371 dbSNP
rs911304334 374 dbSNP
rs1376909563 375 dbSNP
rs1302293629 376 dbSNP
rs752073689 378 dbSNP
rs1361053250 380 dbSNP
rs1157268808 381 dbSNP
rs1419475305 385 dbSNP
rs553182716 386 dbSNP
rs1381360169 391 dbSNP
rs1160848009 395 dbSNP
rs574453455 396 dbSNP
rs1256075682 397 dbSNP
rs968865554 401 dbSNP
rs764374413 405 dbSNP
rs1238843956 407 dbSNP
rs6916 411 dbSNP
rs1487828381 413 dbSNP
rs1286402079 419 dbSNP
rs1242085953 420 dbSNP
rs968811908 420 dbSNP
rs1319781688 422 dbSNP
rs1311934055 429 dbSNP
rs1228949450 430 dbSNP
rs1384571844 433 dbSNP
rs1381517097 434 dbSNP
rs1444969254 436 dbSNP
rs1296545195 441 dbSNP
rs914771881 444 dbSNP
rs1028006567 448 dbSNP
rs763336696 450 dbSNP
rs1361447570 456 dbSNP
rs1300366215 457 dbSNP
rs766091367 464 dbSNP
rs111294759 465 dbSNP
rs776585548 465 dbSNP
rs901098228 466 dbSNP
rs760490276 476 dbSNP
rs1423861791 477 dbSNP
rs772801273 478 dbSNP
rs370839982 480 dbSNP
rs1477266781 484 dbSNP
rs1335256857 485 dbSNP
rs771117093 487 dbSNP
rs1218441262 490 dbSNP
rs1487416259 492 dbSNP
rs1264789649 493 dbSNP
rs1222264656 494 dbSNP
rs1382665349 495 dbSNP
rs528749214 496 dbSNP
rs1276343261 497 dbSNP
rs1218099074 500 dbSNP
rs1226171119 501 dbSNP
rs1306178269 501 dbSNP
rs1251537933 505 dbSNP
rs111241392 509 dbSNP
rs1201258231 512 dbSNP
rs576575660 516 dbSNP
rs969792175 519 dbSNP
rs770321873 520 dbSNP
rs746302915 522 dbSNP
rs1427706635 523 dbSNP
rs556867025 523 dbSNP
rs1390521495 524 dbSNP
rs1047579516 526 dbSNP
rs1294612846 533 dbSNP
rs1174322379 537 dbSNP
rs993352744 548 dbSNP
rs901771165 558 dbSNP
rs1044417980 561 dbSNP
rs1360232662 566 dbSNP
rs1382045631 568 dbSNP
rs1041016691 570 dbSNP
rs944039780 574 dbSNP
rs948687116 577 dbSNP
rs1221348982 580 dbSNP
rs1815835 586 dbSNP
rs917536739 587 dbSNP
rs993031160 588 dbSNP
rs1815836 589 dbSNP
rs934858110 591 dbSNP
rs1195482560 593 dbSNP
rs114214376 594 dbSNP
rs1049827273 599 dbSNP
rs765423503 601 dbSNP
rs1485393159 602 dbSNP
rs1186864465 606 dbSNP
rs568309359 624 dbSNP
rs759626724 626 dbSNP
rs914719383 631 dbSNP
rs1428610035 634 dbSNP
rs1355984441 642 dbSNP
rs554545557 645 dbSNP
rs1480808798 655 dbSNP
rs1178822613 656 dbSNP
rs1310197430 659 dbSNP
rs1453741618 660 dbSNP
rs1289786046 670 dbSNP
rs1028456794 671 dbSNP
rs1402707723 675 dbSNP
rs1815837 676 dbSNP
rs1282259372 679 dbSNP
rs1345550066 680 dbSNP
rs1233811814 686 dbSNP
rs956280571 687 dbSNP
rs534952134 688 dbSNP
rs981754541 690 dbSNP
rs1216487884 691 dbSNP
rs866211002 694 dbSNP
rs565872739 695 dbSNP
rs1436997854 697 dbSNP
rs552447341 699 dbSNP
rs1220446907 703 dbSNP
rs533419790 704 dbSNP
rs1316134770 711 dbSNP
rs1192973725 724 dbSNP
rs1405939903 736 dbSNP
rs1419001292 738 dbSNP
rs1160547615 741 dbSNP
rs1420935875 742 dbSNP
rs570969276 757 dbSNP
rs1815838 769 dbSNP
rs1365785750 782 dbSNP
rs774465046 801 dbSNP
rs1438219026 802 dbSNP
rs1295941724 803 dbSNP
rs550920016 806 dbSNP
rs951818058 813 dbSNP
rs1452186020 815 dbSNP
rs1026076723 816 dbSNP
rs993300182 817 dbSNP
rs1224143684 823 dbSNP
rs1231237090 824 dbSNP
rs1480357491 828 dbSNP
rs1178217570 829 dbSNP
rs1283620597 838 dbSNP
rs901721411 839 dbSNP
rs1443378626 840 dbSNP
rs1478564400 843 dbSNP
rs1222601865 846 dbSNP
rs1005647313 848 dbSNP
rs530834600 852 dbSNP
rs1007504357 854 dbSNP
rs1167890417 855 dbSNP
rs1353343417 857 dbSNP
rs1442337004 859 dbSNP
rs562139070 860 dbSNP
rs887217529 861 dbSNP
rs768525281 862 dbSNP
rs1230183477 867 dbSNP
rs1210338177 868 dbSNP
rs1310648881 869 dbSNP
rs1306954410 871 dbSNP
rs1199323731 872 dbSNP
rs889765354 874 dbSNP
rs1183571552 875 dbSNP
rs1460365290 875 dbSNP
rs1219521531 883 dbSNP
rs1049774303 889 dbSNP
rs542139484 891 dbSNP
rs1418376552 892 dbSNP
rs914665637 897 dbSNP
rs1172156095 900 dbSNP
rs1403350004 901 dbSNP
rs1053237833 910 dbSNP
rs202127265 918 dbSNP
rs934820105 918 dbSNP
rs190565425 943 dbSNP
rs559515045 945 dbSNP
rs545990059 967 dbSNP
rs754361813 971 dbSNP
rs1026841015 976 dbSNP
rs576487799 977 dbSNP
rs1203513439 980 dbSNP
rs951765499 982 dbSNP
rs1360467169 987 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cgacccgaaugcaacCCUCUUg 5'
                         |||||| 
Target 5' --------------uGGAGAAa 3'
1 - 8
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000346178.4 | 3UTR | UGGAGAAAUCAGUUGUGGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.606 8.5e-4 -0.665 2.0e-4 24 Click to see details
GSE14794 Lymphoblastoid cells 0.274 4.5e-3 0.265 5.8e-3 90 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.46 2.1e-2 -0.501 1.2e-2 20 Click to see details
GSE19350 CNS germ cell tumors 0.583 2.3e-2 0.608 1.8e-2 12 Click to see details
GSE27834 Pluripotent stem cells -0.435 4.6e-2 -0.347 9.4e-2 16 Click to see details
GSE42095 Differentiated embryonic stem cells 0.338 5.7e-2 0.375 3.9e-2 23 Click to see details
GSE21032 Prostate cancer 0.171 6.1e-2 0.146 9.4e-2 83 Click to see details
GSE38226 Liver fibrosis -0.326 7.5e-2 -0.309 8.6e-2 21 Click to see details
GSE21849 B cell lymphoma -0.221 1.2e-1 0.364 2.6e-2 29 Click to see details
GSE32688 Pancreatic cancer -0.192 1.5e-1 -0.351 2.4e-2 32 Click to see details
GSE26953 Aortic valvular endothelial cells -0.189 1.9e-1 -0.361 4.2e-2 24 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.164 2.2e-1 0.225 1.4e-1 25 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.291 2.2e-1 0.183 3.2e-1 9 Click to see details
GSE19783 ER+ ER+ breast cancer 0.155 2.6e-1 0.268 1.3e-1 20 Click to see details
GSE17306 Multiple myeloma -0.095 2.6e-1 -0.092 2.6e-1 49 Click to see details
GSE19536 Breast cancer 0.058 2.8e-1 0.101 1.6e-1 100 Click to see details
GSE28260 Renal cortex and medulla -0.164 3.0e-1 -0.143 3.2e-1 13 Click to see details
GSE17498 Multiple myeloma 0.086 3.0e-1 -0.053 3.7e-1 40 Click to see details
GSE21687 Ependynoma primary tumors -0.047 3.6e-1 -0.110 1.9e-1 64 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.036 4.3e-1 -0.015 4.7e-1 25 Click to see details
GSE19783 ER- ER- breast cancer -0.017 4.4e-1 0.010 4.7e-1 79 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
STAD 0.458 0.01 0.466 0.01 28 Click to see details
LIHC 0.285 0.02 0.254 0.04 48 Click to see details
PRAD 0.285 0.03 0.266 0.04 47 Click to see details
COAD 0.679 0.03 0.571 0.07 8 Click to see details
BRCA -0.181 0.06 -0.145 0.1 79 Click to see details
LUAD 0.56 0.06 0.367 0.17 9 Click to see details
THCA -0.139 0.15 -0.005 0.49 59 Click to see details
HNSC -0.165 0.15 -0.080 0.31 42 Click to see details
LUSC 0.163 0.16 0.073 0.33 38 Click to see details
KIRC 0.104 0.2 0.130 0.15 66 Click to see details
BLCA -0.219 0.23 -0.108 0.36 14 Click to see details
CHOL 0.197 0.31 0.467 0.1 9 Click to see details
PAAD -0.35 0.33 -0.600 0.2 4 Click to see details
KIRP -0.068 0.36 0.026 0.44 31 Click to see details
UCEC 0.094 0.36 0.100 0.35 17 Click to see details
ESCA 0.108 0.38 0.173 0.31 11 Click to see details
PCPG -0.305 0.4 -0.500 0.33 3 Click to see details
CESC 0.244 0.42 -0.500 0.33 3 Click to see details
KICH 0.016 0.47 0.002 0.5 25 Click to see details
KICH 0.016 0.47 0.002 0.5 25 Click to see details
KICH 0.016 0.47 0.002 0.5 25 Click to see details
191 hsa-miR-629-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT039582 DDX3X DEAD-box helicase 3, X-linked 1 1
MIRT039583 ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 1 1
MIRT069646 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough 2 2
MIRT069658 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT078218 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT082346 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT107793 SLC1A1 solute carrier family 1 member 1 2 2
MIRT161354 MBNL1 muscleblind like splicing regulator 1 2 2
MIRT228097 BNC2 basonuclin 2 2 2
MIRT312967 STC2 stanniocalcin 2 2 2
MIRT338797 STMN1 stathmin 1 2 2
MIRT454524 RABL2A RAB, member of RAS oncogene family like 2A 2 2
MIRT457233 RABL2B RAB, member of RAS oncogene family like 2B 2 2
MIRT461303 MRPS27 mitochondrial ribosomal protein S27 2 2
MIRT463194 ZNF148 zinc finger protein 148 2 4
MIRT477013 FAM217B family with sequence similarity 217 member B 2 2
MIRT484037 CMKLR1 chemerin chemokine-like receptor 1 2 6
MIRT489367 RAB11B RAB11B, member RAS oncogene family 2 2
MIRT493927 FAM127A retrotransposon Gag like 8C 2 4
MIRT494841 RPAP2 RNA polymerase II associated protein 2 2 2
MIRT494970 TMEM233 transmembrane protein 233 2 2
MIRT496633 SLC46A1 solute carrier family 46 member 1 2 2
MIRT498517 ZNF83 zinc finger protein 83 2 8
MIRT499461 ZNF669 zinc finger protein 669 2 8
MIRT500254 ZNF791 zinc finger protein 791 2 6
MIRT500271 ZNF781 zinc finger protein 781 2 8
MIRT500327 ZNF487P zinc finger protein 487 1 3
MIRT502556 EBAG9 estrogen receptor binding site associated, antigen, 9 2 2
MIRT503658 ZNF138 zinc finger protein 138 2 6
MIRT504010 ACSL6 acyl-CoA synthetase long chain family member 6 2 2
MIRT504592 ZNF440 zinc finger protein 440 2 4
MIRT504827 EREG epiregulin 2 2
MIRT513587 DCTN6 dynactin subunit 6 2 2
MIRT515145 ZNF732 zinc finger protein 732 2 8
MIRT519375 FKBP14 FK506 binding protein 14 2 2
MIRT519635 ZNF772 zinc finger protein 772 2 4
MIRT525273 C18orf32 chromosome 18 open reading frame 32 2 2
MIRT525446 GPATCH2L G-patch domain containing 2 like 2 2
MIRT526165 ANKRD65 ankyrin repeat domain 65 2 2
MIRT526580 CCDC43 coiled-coil domain containing 43 2 2
MIRT528010 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT528140 LRRC38 leucine rich repeat containing 38 2 2
MIRT528641 NEURL neuralized E3 ubiquitin protein ligase 1 1 1
MIRT529290 AGK acylglycerol kinase 2 2
MIRT532739 CMTM6 CKLF like MARVEL transmembrane domain containing 6 2 2
MIRT534299 SKIDA1 SKI/DACH domain containing 1 2 2
MIRT534335 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT537952 DSE dermatan sulfate epimerase 2 2
MIRT538789 C3orf52 chromosome 3 open reading frame 52 2 2
MIRT544379 ZNF266 zinc finger protein 266 2 2
MIRT544450 KRBOX4 KRAB box domain containing 4 2 2
MIRT545375 PM20D2 peptidase M20 domain containing 2 2 2
MIRT548154 FRAT2 FRAT2, WNT signaling pathway regulator 2 2
MIRT552477 ZNF202 zinc finger protein 202 2 2
MIRT557714 GABARAPL1 GABA type A receptor associated protein like 1 2 2
MIRT558897 CCDC58 coiled-coil domain containing 58 2 2
MIRT562727 ZNF468 zinc finger protein 468 2 2
MIRT563640 ZNF675 zinc finger protein 675 2 2
MIRT563672 ZNF254 zinc finger protein 254 2 2
MIRT563682 RPS26 ribosomal protein S26 2 2
MIRT563722 ZNF107 zinc finger protein 107 2 2
MIRT563947 ZNF431 zinc finger protein 431 2 4
MIRT565266 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT566218 PTMA prothymosin, alpha 2 4
MIRT568330 BACH1 BTB domain and CNC homolog 1 2 2
MIRT570862 ZNF525 zinc finger protein 525 2 2
MIRT570871 ZFP1 ZFP1 zinc finger protein 2 2
MIRT571513 ZNF625 zinc finger protein 625 2 2
MIRT572286 ZNF584 zinc finger protein 584 2 2
MIRT572896 RUNDC3B RUN domain containing 3B 2 2
MIRT573083 APLN apelin 2 2
MIRT611739 SERPING1 serpin family G member 1 2 4
MIRT612667 POU2F1 POU class 2 homeobox 1 2 4
MIRT612738 MYOCD myocardin 2 2
MIRT614005 PAOX polyamine oxidase 2 2
MIRT616522 URM1 ubiquitin related modifier 1 2 2
MIRT617811 EMX2 empty spiracles homeobox 2 2 2
MIRT618630 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT619753 MYO1F myosin IF 2 2
MIRT619971 ZSCAN22 zinc finger and SCAN domain containing 22 2 2
MIRT621350 GUCA1B guanylate cyclase activator 1B 2 2
MIRT621379 CLNK cytokine dependent hematopoietic cell linker 2 2
MIRT621510 ZNF638 zinc finger protein 638 2 2
MIRT621536 ZNF500 zinc finger protein 500 2 2
MIRT621616 UHRF1BP1L UHRF1 binding protein 1 like 2 2
MIRT621771 TMEM87B transmembrane protein 87B 2 2
MIRT623498 KCNQ3 potassium voltage-gated channel subfamily Q member 3 2 2
MIRT624079 DR1 down-regulator of transcription 1 2 2
MIRT627001 LINC00598 long intergenic non-protein coding RNA 598 2 4
MIRT628435 ANTXR2 anthrax toxin receptor 2 2 2
MIRT635439 SLC25A44 solute carrier family 25 member 44 2 2
MIRT637161 TMEM50A transmembrane protein 50A 2 2
MIRT638482 OTUB2 OTU deubiquitinase, ubiquitin aldehyde binding 2 2 4
MIRT639287 TFAP2A transcription factor AP-2 alpha 2 4
MIRT639395 NEURL1B neuralized E3 ubiquitin protein ligase 1B 2 2
MIRT641046 PTPRB protein tyrosine phosphatase, receptor type B 2 2
MIRT642576 PSTPIP1 proline-serine-threonine phosphatase interacting protein 1 2 2
MIRT644206 CBS cystathionine-beta-synthase 2 2
MIRT645321 GPR158 G protein-coupled receptor 158 2 2
MIRT645682 TBC1D13 TBC1 domain family member 13 2 2
MIRT646633 COA4 cytochrome c oxidase assembly factor 4 homolog 2 2
MIRT647269 AADACL3 arylacetamide deacetylase like 3 2 2
MIRT648384 ZNF22 zinc finger protein 22 2 2
MIRT648626 LEMD2 LEM domain containing 2 2 2
MIRT650077 MTL5 testis expressed metallothionein like protein 2 2
MIRT650138 ZNF426 zinc finger protein 426 2 2
MIRT650240 CD68 CD68 molecule 2 2
MIRT650836 SEMA4G semaphorin 4G 2 2
MIRT651100 ZNF48 zinc finger protein 48 2 2
MIRT651128 ZNF398 zinc finger protein 398 2 4
MIRT651638 WASF2 WAS protein family member 2 2 2
MIRT652315 TNPO3 transportin 3 2 2
MIRT652753 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT653200 SP9 Sp9 transcription factor 2 2
MIRT653388 SLIT1 slit guidance ligand 1 2 2
MIRT653714 SLC25A32 solute carrier family 25 member 32 2 2
MIRT654498 RABIF RAB interacting factor 2 2
MIRT654811 PPP3R1 protein phosphatase 3 regulatory subunit B, alpha 2 2
MIRT655161 PHF20L1 PHD finger protein 20 like 1 2 2
MIRT655426 PALM2-AKAP2 PALM2-AKAP2 readthrough 2 2
MIRT655538 PADI2 peptidyl arginine deiminase 2 2 4
MIRT656247 MEX3A mex-3 RNA binding family member A 2 2
MIRT656377 MCU mitochondrial calcium uniporter 2 2
MIRT656579 LSAMP limbic system-associated membrane protein 2 2
MIRT656871 KIF26B kinesin family member 26B 2 2
MIRT656972 KDM5B lysine demethylase 5B 2 2
MIRT657211 IGF1R insulin like growth factor 1 receptor 2 2
MIRT657822 GJD3 gap junction protein delta 3 2 2
MIRT658427 FAM175B abraxas 2, BRISC complex subunit 2 2
MIRT658462 FAM102B family with sequence similarity 102 member B 2 2
MIRT658638 ENAH ENAH, actin regulator 2 2
MIRT660047 C12orf5 TP53 induced glycolysis regulatory phosphatase 1 1
MIRT660418 ATXN1L ataxin 1 like 2 2
MIRT660625 ANKRD52 ankyrin repeat domain 52 2 2
MIRT660771 AKAP2 A-kinase anchoring protein 2 2 2
MIRT660978 ABHD2 abhydrolase domain containing 2 2 2
MIRT660999 ABHD10 abhydrolase domain containing 10 2 2
MIRT662146 IPO11 importin 11 2 2
MIRT662558 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT663289 TECPR2 tectonin beta-propeller repeat containing 2 2 2
MIRT663809 RNF128 ring finger protein 128, E3 ubiquitin protein ligase 2 2
MIRT663820 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT666963 PITPNM3 PITPNM family member 3 2 2
MIRT668239 FZD2 frizzled class receptor 2 2 2
MIRT669328 BSND barttin CLCNK type accessory beta subunit 2 2
MIRT679289 SSBP2 single stranded DNA binding protein 2 2 2
MIRT687506 NCKAP1 NCK associated protein 1 2 2
MIRT697018 EPDR1 ependymin related 1 2 2
MIRT698929 SPATA2 spermatogenesis associated 2 2 2
MIRT700850 PERP PERP, TP53 apoptosis effector 2 2
MIRT702425 KIAA1958 KIAA1958 2 2
MIRT703937 EPB41L1 erythrocyte membrane protein band 4.1 like 1 2 2
MIRT705374 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT708308 CDH8 cadherin 8 2 2
MIRT708644 LYRM7 LYR motif containing 7 2 2
MIRT708960 SLC12A3 solute carrier family 12 member 3 2 2
MIRT709460 KRTAP19-1 keratin associated protein 19-1 2 2
MIRT709944 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT710089 FAM229B family with sequence similarity 229 member B 2 2
MIRT711120 CYYR1 cysteine and tyrosine rich 1 2 2
MIRT711553 FAM20B FAM20B, glycosaminoglycan xylosylkinase 2 2
MIRT711575 ASPA aspartoacylase 2 2
MIRT712231 RCC2 regulator of chromosome condensation 2 2 2
MIRT712401 MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 2 2
MIRT713193 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT713316 TMEM44 transmembrane protein 44 2 2
MIRT713508 PAFAH2 platelet activating factor acetylhydrolase 2 2 2
MIRT713615 MED8 mediator complex subunit 8 2 2
MIRT713956 BCL2L13 BCL2 like 13 2 2
MIRT714347 CES2 carboxylesterase 2 2 2
MIRT714987 TSPAN11 tetraspanin 11 2 2
MIRT715165 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT715433 RGS6 regulator of G protein signaling 6 2 2
MIRT715465 NEGR1 neuronal growth regulator 1 2 2
MIRT715886 GNG2 G protein subunit gamma 2 2 2
MIRT716089 HARS histidyl-tRNA synthetase 2 2
MIRT717379 RBM41 RNA binding motif protein 41 2 2
MIRT717395 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT717964 PXMP4 peroxisomal membrane protein 4 2 2
MIRT719212 CAMK4 calcium/calmodulin dependent protein kinase IV 2 2
MIRT720580 FAM9C family with sequence similarity 9 member C 2 2
MIRT720712 RAPGEF6 Rap guanine nucleotide exchange factor 6 2 2
MIRT721069 TGFBI transforming growth factor beta induced 2 2
MIRT721326 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT721473 BTN3A2 butyrophilin subfamily 3 member A2 2 2
MIRT721734 SDK2 sidekick cell adhesion molecule 2 2 2
MIRT723545 ZDHHC22 zinc finger DHHC-type containing 22 2 2
MIRT723745 AIFM2 apoptosis inducing factor, mitochondria associated 2 2 2
MIRT723787 MUC17 mucin 17, cell surface associated 2 2
MIRT725499 GANAB glucosidase II alpha subunit 2 2
MIRT735726 FOXO3 forkhead box O3 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-629 Glucose NULL 5793 Microarray endothelial cells 24394957 2014 up-regulated
miR-629 Ascorbate approved 54670067 Microarray Metastatic melanoma cell lines 25202679 2014 up-regualted
miR-629 Vorinostat (SAHA) approved 5311 Microarray A549 human non-small cell lung cancer cells 19513533 2009 up-regulated
miR-629 Sorafenib approved 216239 Quantitative real-time PCR hepatocellular carcinoma 21530512 2011 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-629 Paroxetine 43815 approved sensitive High Normal lymphoblastoid cell line
hsa-mir-629 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-629 Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-629 Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-629 Daunorubicin 30323 NSC82151 approved resistant High Lymphoblastic Leukemia tissue
hsa-miR-629 Vincristine 5978 approved resistant High Lymphoblastic Leukemia tissue
hsa-miR-629 L-Asparaginase resistant High Lymphoblastic Leukemia tissue
hsa-miR-629 Prednisolone 5755 NSC9120 approved resistant High Lymphoblastic Leukemia tissue
hsa-miR-629 Paroxetine 43815 approved resistant High Normal lymphoblastoid cell line
hsa-miR-629 Sunitinib 5329102 NSC750690 approved sensitive High Renal Cell Cancer tissue
hsa-miR-629 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-629 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-629 Cisplatin 5460033 NSC119875 approved sensitive High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-629 1'-Acetoxychavicol acetate 119104 NSC711510 resistant Low Cervical Cancer cell line (Ca Ski, SiHa)
hsa-miR-629 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-629 Sunitinib 5329102 NSC750690 approved sensitive High Renal Cell Cancer tissue
hsa-mir-629 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-629 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-629 Androstenedione+Anastrozole sensitive cell line (MCF-7)
hsa-mir-629 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-629 Cisplatin 5460033 NSC119875 approved resistant cell line (KYSE)
hsa-mir-629 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-629 Paclitaxel 36314 NSC125973 approved resistant cell line (HeyA8)
hsa-miR-629 Testosterone+Exemestane sensitive cell line (MCF-7)
hsa-miR-629 Testosterone+Tamoxifen sensitive cell line (MCF-7)
hsa-miR-629 Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-629 Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-629 Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-629 Paclitaxel 36314 NSC125973 approved resistant cell line (SKOV3)
hsa-miR-629 Pegylated interferon alpha+Ribavirin sensitive tissue (chronic hepatitis C)
hsa-miR-629 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-629 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-629 Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR3)
hsa-miR-629 Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)
hsa-miR-629 Cisplatin 5460033 NSC119875 approved sensitive cell line (H23)
hsa-miR-629 Cisplatin 5460033 NSC119875 approved resistant cell line (OVCAR3)
hsa-miR-629 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide/Methotrexate/Gemcitabine resistant cell line (Bats-72)
hsa-miR-629-3p Paroxetine 43815 approved resistant High Normal lymphoblastoid cell line
hsa-miR-629-3p Chemotherapy sensitive High Epithelial Ovarian Cancer tissue
hsa-miR-629-3p Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375)
hsa-miR-629-3p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (TAMR4)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved resistant High Gallbladder Cancer cell line (GBC-SD, NOZ)
hsa-miR-629-3p Ponatinib 24826799 NSC758487 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-629-3p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-629-3p Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-629-3p Oxaliplatin 6857599 NSC266046 approved sensitive Low Colorectal Cancer cell line (HCT-116)
hsa-miR-629-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-629-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-629-3p Rituximab sensitive High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved resistant Low Oral Cancer cell line (SAS, HSC-3, HSC-4)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-629-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-629-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (mitochondrial RNA)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-629-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-629-3p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-629-3p Leuprorelin/Goserelin + Bicalutamide sensitive tissue (prostate cancer)
hsa-miR-629-3p 4-Hydroxytamoxifen+Tamoxifen sensitive cell line (LY2)
hsa-miR-629-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-629-3p Pegylated interferon alpha+Ribavirin sensitive tissue (chronic hepatitis C)
hsa-miR-629-3p Tamoxifen 2733525 NSC180973 approved resistant cell line (TamR4)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-629-3p Gemcitabine 60750 NSC613327 approved resistant cell line (MDA-231)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-629-3p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved resistant cell line (H460)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (OVCAR3)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (H23)

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