pre-miRNA Information
pre-miRNA hsa-mir-660   
Genomic Coordinates chrX: 50013241 - 50013337
Synonyms MIRN660, hsa-mir-660, MIR660
Description Homo sapiens miR-660 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-660-3p
Sequence 52| ACCUCCUGUGUGCAUGGAUUA |72
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1221699333 1 dbSNP
rs781893004 6 dbSNP
rs180785970 8 dbSNP
rs1272406504 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CAPN6   
Synonyms CANPX, CAPNX, CalpM, DJ914P14.1
Description calpain 6
Transcript NM_014289   
Expression
Putative miRNA Targets on CAPN6
3'UTR of CAPN6
(miRNA target sites are highlighted)
>CAPN6|NM_014289|3'UTR
   1 ATCTGCAATCCCAGAGAATCCTGACAAAGCGTGCCACCCTTTTATTTTCCGTCAGGTGCCAGGTCTTAGTTAAGATTCAC
  81 AATCTTTAGAAAGAATGAGATTCACAATAATTAACTCTTCCTCTCTTCTGATAAATTCCCCATACCTCCCAATCCAAGTA
 161 GCATCTGTAGCTACATAACCTATATACCTCCAGCAGCTGGACATGGGGAGGCGACAGTCCTATCTAGACATCATACACAT
 241 TTGCCAAGAAAGGATCTCTGGGGCTTCCGGGGGTGAGATTCAAGCAGGACAATAACAAGAGGCTGGACACCCTACAGATG
 321 TCTTTGATGTTTTCAGTTGTTTGATATATCTCCCCTGTAGGGCATGTTGAGGAAGGAGGAGGGCTGATCAAGGCCAAGCT
 401 GGTCTAGCCTGACATCCTAGCTCCTGACTGAACACTATAGACTTCCCAGCAGCATTTCACCCAGCAGCCAGAGCCGGCTT
 481 TAAGTCCCCAACCCTTACAGACACCACTGCCACCACCACCAACCACGACCACCACCACCACCACCACTCACCACCATCAT
 561 CACCTCCGGAAAGTGTAGTCCTGCCCTAACCCAAGTCACCCCCGACAGTAAATTTTACCTTCATGTTGAGAAAGCTTCCT
 641 GGTGCTTAATCAAGAGCTGGAGTTCAATGAGTCCTAGACAGTGAGAGGGGCCTGAGCTTCAGCTCAATGGAAGCCTGCTG
 721 TGTGCCACAAGACGGAAAAGTGGAAGAAGCTGCAGTGGGAGACAAAGCCTCGGTCCCCCACCCATCCACACACACCTACA
 801 CTCACACACGCGCACATGGGCGCGCACGAACTACCATTCAGGCAGTCAGTGGGCAAGAGGAAAGATAAGTAAGTACCATA
 881 CACACCTAAAAGATGAGAGAATTCATCCAGACATATTACAGCCAGTTTGGGGCCCCTGACTGCAATGTGAAACCTCTCGC
 961 TGCTGCTAGGTTTACAAACAAGCCCATTGTCCTGTGCCTCCTAATATCATTTGTACTGAAGACCCCATCTGGGGACTTGA
1041 GACTTTGGTCCCAGCCCAGACTCCTCAGACTTTTCTCTCAGTTGGGATGCTTCACTCGCTGGGGGTGTTTGTTTGCCCTC
1121 TCATTTTTCAGTACTTCTACAGAATTTTCTCTAGAGTCAGTCATTATGAAATGTACTTCCCTCCATCTTAACCTATCAAC
1201 TTTCTGCCCCTCCTTCAAGGCCCAGTATAAATGCCACCTCCTCCATGAAGCCTTCCCTAATTCCACCCCAAACCCCCACC
1281 TTCAACAATATTTCAACGCTTCTGCAATGATGAAAAAGAAACATAGTTGTAGTACTTAGCCTACCTAGACCAGCAAGCAT
1361 TCATTTTTAGCTCGCTCATTTTTTACCATGTTTTCCAGTCTGTTTAACTTCTGCAGTGCCTTCACTACACTGCCTTACAT
1441 AAACCAAATCACAATAAAGTTCATATTCAGTACATTGAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auUAGGUACG---UG----UGUCCUCCa 5'
            ||:|| ||   ||    ||| |||| 
Target 5' agATTCAAGCAGGACAATAACAAGAGGc 3'
276 - 303 125.00 -11.30
2
miRNA  3' auUAGGUACGU--GU-----GUCCUCCa 5'
            ||:|| |||  ||     || |||| 
Target 5' ccATTCAGGCAGTCAGTGGGCAAGAGGa 3'
834 - 861 125.00 -12.60
3
miRNA  3' auuagGUACG--UGUGUCCUCCa 5'
               ||||:  | : |||||| 
Target 5' tagggCATGTTGAGGAAGGAGGa 3'
358 - 380 122.00 -14.30
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs751042151 6 dbSNP
rs763646342 12 dbSNP
rs1335148821 18 dbSNP
rs1340487154 19 dbSNP
rs762939222 20 dbSNP
rs765226420 21 dbSNP
rs1413083054 25 dbSNP
rs779944838 30 dbSNP
rs756062996 31 dbSNP
rs1351121394 33 dbSNP
rs1230798763 34 dbSNP
rs1392648913 39 dbSNP
rs376205120 50 dbSNP
rs774548980 51 dbSNP
rs1333887154 52 dbSNP
rs943917558 56 dbSNP
rs970567068 64 dbSNP
rs1440328679 75 dbSNP
rs912518566 84 dbSNP
rs1186690829 86 dbSNP
rs1024864899 88 dbSNP
rs1473257127 89 dbSNP
rs1246731530 90 dbSNP
rs1322502036 96 dbSNP
rs982738925 99 dbSNP
rs1012089002 117 dbSNP
rs895154714 120 dbSNP
rs1174094524 122 dbSNP
rs1399712905 134 dbSNP
rs1295161404 137 dbSNP
rs1432949357 139 dbSNP
rs951413263 141 dbSNP
rs1027464417 142 dbSNP
rs1032345859 146 dbSNP
rs1000867001 149 dbSNP
rs1351220116 163 dbSNP
rs764021932 178 dbSNP
rs1440729235 183 dbSNP
rs1305559819 185 dbSNP
rs1335678514 187 dbSNP
rs1234515092 191 dbSNP
rs902628512 193 dbSNP
rs1346090699 198 dbSNP
rs751170869 202 dbSNP
rs1209734342 208 dbSNP
rs1392936541 210 dbSNP
rs758530292 212 dbSNP
rs933505044 213 dbSNP
rs901984639 222 dbSNP
rs1433696773 223 dbSNP
rs1458765031 225 dbSNP
rs765610313 243 dbSNP
rs1039312841 248 dbSNP
rs1375744567 253 dbSNP
rs1453533710 255 dbSNP
rs1003046059 268 dbSNP
rs759832184 269 dbSNP
rs754343535 271 dbSNP
rs1169369891 281 dbSNP
rs6642884 285 dbSNP
rs879066284 289 dbSNP
rs1296523241 296 dbSNP
rs1395776835 299 dbSNP
rs1391557405 300 dbSNP
rs759959821 306 dbSNP
rs760720180 308 dbSNP
rs1233978323 311 dbSNP
rs984225035 315 dbSNP
rs1053881739 336 dbSNP
rs773313251 340 dbSNP
rs767459044 349 dbSNP
rs899589194 360 dbSNP
rs1039508360 364 dbSNP
rs1211368249 371 dbSNP
rs943907665 376 dbSNP
rs1265147961 385 dbSNP
rs912465978 386 dbSNP
rs1188957367 389 dbSNP
rs777197883 394 dbSNP
rs1250945957 409 dbSNP
rs970979582 416 dbSNP
rs766908794 419 dbSNP
rs1458435368 429 dbSNP
rs1295840890 434 dbSNP
rs1392888561 435 dbSNP
rs1024728645 437 dbSNP
rs1321636862 446 dbSNP
rs919908228 450 dbSNP
rs990612227 459 dbSNP
rs141502824 460 dbSNP
rs1294359451 461 dbSNP
rs1321840060 475 dbSNP
rs1298348455 477 dbSNP
rs958780629 478 dbSNP
rs959317545 480 dbSNP
rs1032207999 491 dbSNP
rs1034887869 496 dbSNP
rs1209211980 503 dbSNP
rs981600339 504 dbSNP
rs1329818374 505 dbSNP
rs971584642 507 dbSNP
rs774659243 510 dbSNP
rs749092144 512 dbSNP
rs1001297487 514 dbSNP
rs1010471051 519 dbSNP
rs1021472867 521 dbSNP
rs1416423365 526 dbSNP
rs957871642 527 dbSNP
rs775346182 528 dbSNP
rs1160491932 533 dbSNP
rs902013933 539 dbSNP
rs1039257075 540 dbSNP
rs1379431097 547 dbSNP
rs888056380 548 dbSNP
rs943507804 548 dbSNP
rs148359679 559 dbSNP
rs1228948938 564 dbSNP
rs745408434 567 dbSNP
rs1427352104 568 dbSNP
rs1260418260 574 dbSNP
rs1135705 578 dbSNP
rs1049298641 580 dbSNP
rs756669914 585 dbSNP
rs1039455188 586 dbSNP
rs985465638 598 dbSNP
rs746674516 603 dbSNP
rs11241 604 dbSNP
rs890935382 609 dbSNP
rs771431335 623 dbSNP
rs1046893165 624 dbSNP
rs1433541204 642 dbSNP
rs187360835 645 dbSNP
rs1202779808 660 dbSNP
rs1371074249 669 dbSNP
rs1484131564 672 dbSNP
rs917659441 673 dbSNP
rs1210216851 679 dbSNP
rs756678491 688 dbSNP
rs368294771 689 dbSNP
rs937374021 691 dbSNP
rs927349731 696 dbSNP
rs979346822 707 dbSNP
rs1485414852 710 dbSNP
rs967123397 721 dbSNP
rs1412087132 729 dbSNP
rs750848837 733 dbSNP
rs182305354 734 dbSNP
rs913376422 746 dbSNP
rs1177081312 752 dbSNP
rs761918655 756 dbSNP
rs1413385522 761 dbSNP
rs1426334566 763 dbSNP
rs966149349 767 dbSNP
rs774781931 768 dbSNP
rs200301027 771 dbSNP
rs989394685 772 dbSNP
rs1017686497 777 dbSNP
rs1363179307 783 dbSNP
rs369194508 788 dbSNP
rs376720831 794 dbSNP
rs957606465 798 dbSNP
rs887922100 804 dbSNP
rs1293991375 809 dbSNP
rs554797375 810 dbSNP
rs993729760 811 dbSNP
rs1033712127 812 dbSNP
rs747685368 813 dbSNP
rs1229325732 814 dbSNP
rs1275221249 818 dbSNP
rs762889531 822 dbSNP
rs866750254 823 dbSNP
rs775322872 824 dbSNP
rs773959828 827 dbSNP
rs937861998 828 dbSNP
rs890883101 830 dbSNP
rs1046839805 843 dbSNP
rs1416800080 844 dbSNP
rs966689589 849 dbSNP
rs1165456531 864 dbSNP
rs994447537 868 dbSNP
rs976108294 882 dbSNP
rs1436111982 884 dbSNP
rs1272101789 896 dbSNP
rs1337582909 899 dbSNP
rs1266812537 902 dbSNP
rs1230585813 905 dbSNP
rs966013632 913 dbSNP
rs1337581571 920 dbSNP
rs898405738 927 dbSNP
rs1038722083 929 dbSNP
rs937340727 930 dbSNP
rs1194918026 935 dbSNP
rs927258209 937 dbSNP
rs779828518 940 dbSNP
rs1181933158 945 dbSNP
rs1338340379 946 dbSNP
rs1007620050 958 dbSNP
rs1459819653 959 dbSNP
rs1164066108 962 dbSNP
rs41307389 966 dbSNP
rs1402206132 979 dbSNP
rs913324011 983 dbSNP
rs1027782610 985 dbSNP
rs988985673 986 dbSNP
rs898106457 1000 dbSNP
rs1284861049 1002 dbSNP
rs957799767 1013 dbSNP
rs185948400 1024 dbSNP
rs1387780727 1027 dbSNP
rs779778971 1029 dbSNP
rs755951904 1032 dbSNP
rs1207246514 1039 dbSNP
rs1281787134 1051 dbSNP
rs975374544 1059 dbSNP
rs1412527020 1069 dbSNP
rs964944705 1071 dbSNP
rs1473914875 1081 dbSNP
rs1162441252 1084 dbSNP
rs1017860863 1097 dbSNP
rs986431614 1098 dbSNP
rs1412598779 1102 dbSNP
rs955121174 1104 dbSNP
rs1156593834 1107 dbSNP
rs1025382773 1109 dbSNP
rs1400357569 1116 dbSNP
rs994003046 1116 dbSNP
rs1313663484 1123 dbSNP
rs1377386496 1124 dbSNP
rs17882941 1124 dbSNP
rs1293278161 1125 dbSNP
rs770428901 1142 dbSNP
rs1336865492 1143 dbSNP
rs1241718758 1153 dbSNP
rs867309895 1163 dbSNP
rs746514760 1172 dbSNP
rs1200702871 1173 dbSNP
rs925022799 1208 dbSNP
rs138331193 1210 dbSNP
rs905789275 1215 dbSNP
rs1246703272 1219 dbSNP
rs758523241 1231 dbSNP
rs1439498614 1245 dbSNP
rs554392177 1256 dbSNP
rs1363035204 1258 dbSNP
rs913841646 1259 dbSNP
rs17879023 1266 dbSNP
rs1174540771 1273 dbSNP
rs891871299 1297 dbSNP
rs975971071 1298 dbSNP
rs41310701 1302 dbSNP
rs1362194779 1308 dbSNP
rs1312356061 1311 dbSNP
rs955319289 1314 dbSNP
rs1393667292 1318 dbSNP
rs944702190 1323 dbSNP
rs1335584142 1334 dbSNP
rs367596808 1345 dbSNP
rs910521439 1349 dbSNP
rs1305256214 1357 dbSNP
rs1345292916 1362 dbSNP
rs1226977903 1363 dbSNP
rs1353772413 1371 dbSNP
rs1285637637 1374 dbSNP
rs1251399338 1385 dbSNP
rs936116686 1388 dbSNP
rs986216774 1394 dbSNP
rs926084550 1395 dbSNP
rs780492818 1398 dbSNP
rs1452016412 1408 dbSNP
rs1195261477 1415 dbSNP
rs943583596 1418 dbSNP
rs17878734 1419 dbSNP
rs1250833774 1429 dbSNP
rs1028142665 1430 dbSNP
rs986423237 1439 dbSNP
rs1437109957 1440 dbSNP
rs955071745 1442 dbSNP
rs1373746103 1444 dbSNP
rs962499683 1474 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' auuagguacgugugUCCUCCa 5'
                        |||||| 
Target 5' ------------gaAGGAGGa 3'
1 - 9
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000324068.1 | 3UTR | GAAGGAGGAGGGCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
348 hsa-miR-660-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059151 TXNIP thioredoxin interacting protein 2 2
MIRT294324 ZNF264 zinc finger protein 264 2 2
MIRT306043 SKIL SKI like proto-oncogene 2 4
MIRT392841 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT444084 C12orf73 chromosome 12 open reading frame 73 2 2
MIRT458774 CES2 carboxylesterase 2 2 2
MIRT460273 SLC26A2 solute carrier family 26 member 2 2 2
MIRT462675 HMOX1 heme oxygenase 1 2 4
MIRT473711 MAPK1 mitogen-activated protein kinase 1 2 6
MIRT478539 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT483234 FAM13C family with sequence similarity 13 member C 2 4
MIRT486255 BCORL1 BCL6 corepressor like 1 2 2
MIRT501951 MAT2A methionine adenosyltransferase 2A 2 10
MIRT513043 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT513249 FBXO17 F-box protein 17 2 2
MIRT526940 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT528176 C6orf47 chromosome 6 open reading frame 47 2 2
MIRT531525 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT532746 CMTM6 CKLF like MARVEL transmembrane domain containing 6 2 2
MIRT534241 SLC23A1 solute carrier family 23 member 1 2 2
MIRT538198 DBN1 drebrin 1 2 2
MIRT539305 AMOTL1 angiomotin like 1 2 2
MIRT539567 CNKSR3 CNKSR family member 3 2 4
MIRT540043 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540232 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540251 RGS17 regulator of G protein signaling 17 2 2
MIRT540878 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT543484 RXRA retinoid X receptor alpha 2 2
MIRT551435 F2 coagulation factor II, thrombin 2 2
MIRT553925 STK11IP serine/threonine kinase 11 interacting protein 2 2
MIRT556312 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT556943 ING1 inhibitor of growth family member 1 2 2
MIRT569883 EFEMP2 EGF containing fibulin like extracellular matrix protein 2 2 2
MIRT571849 NRBF2 nuclear receptor binding factor 2 2 2
MIRT572420 VWA5A von Willebrand factor A domain containing 5A 2 2
MIRT572495 BTN2A2 butyrophilin subfamily 2 member A2 2 2
MIRT572564 AFF1 AF4/FMR2 family member 1 2 2
MIRT572883 CHST15 carbohydrate sulfotransferase 15 2 2
MIRT574988 Slc38a5 solute carrier family 38, member 5 2 4
MIRT575264 Timp3 tissue inhibitor of metalloproteinase 3 2 2
MIRT608476 RRP36 ribosomal RNA processing 36 2 4
MIRT608529 TMOD3 tropomodulin 3 2 2
MIRT608578 RNF149 ring finger protein 149 2 2
MIRT608615 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT608679 STPG1 sperm tail PG-rich repeat containing 1 2 2
MIRT608727 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2 2
MIRT609575 CATSPER4 cation channel sperm associated 4 2 2
MIRT609710 TMEM132C transmembrane protein 132C 2 2
MIRT609858 DAZAP2 DAZ associated protein 2 2 2
MIRT610262 LRRC47 leucine rich repeat containing 47 2 2
MIRT610349 AGTRAP angiotensin II receptor associated protein 2 2
MIRT610729 PEA15 phosphoprotein enriched in astrocytes 15 2 4
MIRT610803 KLK2 kallikrein related peptidase 2 2 2
MIRT610968 MAFK MAF bZIP transcription factor K 2 2
MIRT611117 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 2 2
MIRT611600 JAKMIP3 Janus kinase and microtubule interacting protein 3 2 4
MIRT612211 TMEM109 transmembrane protein 109 2 2
MIRT612248 MICALL1 MICAL like 1 2 2
MIRT613252 CAV1 caveolin 1 2 4
MIRT613323 ARID3A AT-rich interaction domain 3A 2 4
MIRT613514 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT613605 TP53 tumor protein p53 2 2
MIRT613632 ARHGAP35 Rho GTPase activating protein 35 2 2
MIRT613809 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT614835 PRKCA protein kinase C alpha 2 2
MIRT614985 GIPC1 GIPC PDZ domain containing family member 1 2 2
MIRT615320 MLXIPL MLX interacting protein like 2 2
MIRT615504 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT615529 SPANXN5 SPANX family member N5 2 2
MIRT615610 SPANXN1 SPANX family member N1 2 2
MIRT615755 C6 complement C6 2 2
MIRT615952 SORD sorbitol dehydrogenase 2 2
MIRT616284 HMGB1 high mobility group box 1 2 2
MIRT616626 KCNJ11 potassium voltage-gated channel subfamily J member 11 2 4
MIRT616882 DGCR14 ess-2 splicing factor homolog 2 2
MIRT616994 COL19A1 collagen type XIX alpha 1 chain 2 2
MIRT617080 SPIB Spi-B transcription factor 2 2
MIRT617345 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617712 RUSC2 RUN and SH3 domain containing 2 2 2
MIRT618102 PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 2 2
MIRT618493 DENND5B DENN domain containing 5B 2 4
MIRT618756 SLC38A5 solute carrier family 38 member 5 2 5
MIRT619928 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT620028 NFAM1 NFAT activating protein with ITAM motif 1 2 2
MIRT620087 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 2
MIRT620209 VN1R1 vomeronasal 1 receptor 1 2 2
MIRT620557 C10orf10 chromosome 10 open reading frame 10 2 4
MIRT620770 CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) 2 2
MIRT620784 IL10RB interleukin 10 receptor subunit beta 2 2
MIRT620895 ANO7 anoctamin 7 2 2
MIRT621284 PIWIL1 piwi like RNA-mediated gene silencing 1 2 2
MIRT622594 PRRG4 proline rich and Gla domain 4 2 2
MIRT623273 MED28 mediator complex subunit 28 2 2
MIRT624247 VSIG2 V-set and immunoglobulin domain containing 2 2 2
MIRT624298 COMMD2 COMM domain containing 2 2 2
MIRT624526 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT624567 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT624692 AR androgen receptor 2 2
MIRT624767 AKR1D1 aldo-keto reductase family 1 member D1 2 2
MIRT624829 ACO1 aconitase 1 2 2
MIRT625159 ZCCHC8 zinc finger CCHC-type containing 8 2 4
MIRT625261 ZNF566 zinc finger protein 566 2 2
MIRT625388 ZNF716 zinc finger protein 716 2 2
MIRT625827 FBXO42 F-box protein 42 2 2
MIRT625837 NXPE2 neurexophilin and PC-esterase domain family member 2 2 2
MIRT626021 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626052 PDE4C phosphodiesterase 4C 2 2
MIRT626354 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT626778 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 2
MIRT627050 HOXA13 homeobox A13 2 2
MIRT627274 XIAP X-linked inhibitor of apoptosis 2 2
MIRT627310 WDR31 WD repeat domain 31 2 2
MIRT627916 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT630557 CCDC107 coiled-coil domain containing 107 2 2
MIRT630775 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT632083 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT633138 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT633711 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT634361 RNF157 ring finger protein 157 2 2
MIRT635739 IFNAR1 interferon alpha and beta receptor subunit 1 2 2
MIRT636963 APTX aprataxin 2 2
MIRT637373 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT637815 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT637911 FAM153B family with sequence similarity 153 member B 2 2
MIRT638474 PANK3 pantothenate kinase 3 2 2
MIRT638633 GSR glutathione-disulfide reductase 2 4
MIRT639493 TSPAN1 tetraspanin 1 2 2
MIRT639773 GPR45 G protein-coupled receptor 45 2 2
MIRT639781 RAX retina and anterior neural fold homeobox 2 2
MIRT639915 SLIT1 slit guidance ligand 1 2 2
MIRT640055 MCL1 MCL1, BCL2 family apoptosis regulator 2 4
MIRT640108 DUOX2 dual oxidase 2 2 2
MIRT640402 ZNF785 zinc finger protein 785 2 2
MIRT640555 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT640751 ZBTB26 zinc finger and BTB domain containing 26 2 2
MIRT640765 GLO1 glyoxalase I 2 2
MIRT640915 RAB13 RAB13, member RAS oncogene family 2 2
MIRT641521 CREBBP CREB binding protein 2 2
MIRT641533 SNW1 SNW domain containing 1 2 2
MIRT641692 SPCS1 signal peptidase complex subunit 1 2 2
MIRT641745 MACROD2 MACRO domain containing 2 2 2
MIRT641866 STOML1 stomatin like 1 2 2
MIRT641951 RNF115 ring finger protein 115 2 2
MIRT642205 SMAGP small cell adhesion glycoprotein 2 2
MIRT642420 CILP2 cartilage intermediate layer protein 2 2 2
MIRT643028 LETM2 leucine zipper and EF-hand containing transmembrane protein 2 2 2
MIRT643406 PAX1 paired box 1 2 2
MIRT643500 ZNF195 zinc finger protein 195 2 2
MIRT643754 LEFTY2 left-right determination factor 2 2 2
MIRT643898 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT644036 CENPM centromere protein M 2 2
MIRT644200 LAT2 linker for activation of T-cells family member 2 2 2
MIRT644228 ADD1 adducin 1 2 2
MIRT644690 GPR55 G protein-coupled receptor 55 2 2
MIRT645128 HES2 hes family bHLH transcription factor 2 2 2
MIRT645347 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT645897 ATP2B3 ATPase plasma membrane Ca2+ transporting 3 2 2
MIRT645905 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT646049 NPR1 natriuretic peptide receptor 1 2 2
MIRT646137 C1orf147 chromosome 1 open reading frame 147 2 2
MIRT646219 DUSP10 dual specificity phosphatase 10 2 2
MIRT646385 SLC22A6 solute carrier family 22 member 6 2 2
MIRT646739 FADS1 fatty acid desaturase 1 2 2
MIRT646877 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT647109 GNL3L G protein nucleolar 3 like 2 2
MIRT647523 PPIE peptidylprolyl isomerase E 2 2
MIRT647553 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT647755 NBPF3 NBPF member 3 2 2
MIRT648075 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT648225 TM4SF20 transmembrane 4 L six family member 20 2 2
MIRT648441 MYOZ3 myozenin 3 2 2
MIRT648823 ZNF689 zinc finger protein 689 2 2
MIRT649229 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT649237 FEM1A fem-1 homolog A 2 2
MIRT649249 TRIM65 tripartite motif containing 65 2 2
MIRT649459 WDR70 WD repeat domain 70 2 2
MIRT649637 RASA4 RAS p21 protein activator 4 2 2
MIRT650745 FKTN fukutin 2 2
MIRT651041 ZNF652 zinc finger protein 652 2 2
MIRT651754 VEGFA vascular endothelial growth factor A 2 2
MIRT651799 UST uronyl 2-sulfotransferase 2 2
MIRT652562 TLX1 T-cell leukemia homeobox 1 2 2
MIRT652776 TENM3 teneurin transmembrane protein 3 2 2
MIRT652939 SYNGR1 synaptogyrin 1 2 2
MIRT653006 STXBP5L syntaxin binding protein 5 like 2 2
MIRT653030 STX1B syntaxin 1B 2 2
MIRT653279 SNAP29 synaptosome associated protein 29 2 2
MIRT654057 S1PR1 sphingosine-1-phosphate receptor 1 2 2
MIRT654329 RBM33 RNA binding motif protein 33 2 2
MIRT654650 PTAFR platelet activating factor receptor 2 2
MIRT656577 LSM10 LSM10, U7 small nuclear RNA associated 2 2
MIRT656595 LSAMP limbic system-associated membrane protein 2 2
MIRT656646 LRIG1 leucine rich repeats and immunoglobulin like domains 1 2 2
MIRT656739 LMBR1L limb development membrane protein 1 like 2 2
MIRT656903 KIAA1958 KIAA1958 2 2
MIRT657392 HM13 histocompatibility minor 13 2 2
MIRT657528 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT657611 GRID1 glutamate ionotropic receptor delta type subunit 1 2 2
MIRT657668 GPR26 G protein-coupled receptor 26 2 2
MIRT657689 GPR155 G protein-coupled receptor 155 2 2
MIRT657818 GJD3 gap junction protein delta 3 2 2
MIRT658410 FAM208A family with sequence similarity 208 member A 2 2
MIRT658955 DNMT3A DNA methyltransferase 3 alpha 2 2
MIRT659425 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT659499 CISD3 CDGSH iron sulfur domain 3 2 2
MIRT659994 C2CD2L C2CD2 like 2 2
MIRT660215 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660493 ARRDC3 arrestin domain containing 3 2 2
MIRT660761 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT660827 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT661576 EPHX2 epoxide hydrolase 2 2 2
MIRT661711 MTO1 mitochondrial tRNA translation optimization 1 2 4
MIRT661826 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT662123 APOL6 apolipoprotein L6 2 2
MIRT662254 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT662314 ADM2 adrenomedullin 2 2 2
MIRT662341 MYLK3 myosin light chain kinase 3 2 2
MIRT662453 SEMA5A semaphorin 5A 2 2
MIRT662746 LRRC3C leucine rich repeat containing 3C 2 2
MIRT662901 GJB1 gap junction protein beta 1 2 2
MIRT663018 KIAA1586 KIAA1586 2 2
MIRT663102 THEM4 thioesterase superfamily member 4 2 2
MIRT663574 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT664125 C4orf32 family with sequence similarity 241 member A 2 2
MIRT664560 SORBS2 sorbin and SH3 domain containing 2 2 2
MIRT665589 TUBD1 tubulin delta 1 2 2
MIRT666464 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT666527 RNF170 ring finger protein 170 2 2
MIRT666874 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 2 2
MIRT667055 PARVA parvin alpha 2 2
MIRT667282 NAV1 neuron navigator 1 2 2
MIRT667928 IGLON5 IgLON family member 5 2 2
MIRT667957 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 2 2
MIRT668336 FKBP5 FK506 binding protein 5 2 2
MIRT668718 DIP2C disco interacting protein 2 homolog C 2 2
MIRT669310 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669688 ABLIM1 actin binding LIM protein 1 2 2
MIRT671524 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT672112 TLCD2 TLC domain containing 2 2 4
MIRT672186 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT672702 ZNF677 zinc finger protein 677 2 2
MIRT673473 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT673617 HPSE heparanase 2 2
MIRT673763 ZNF333 zinc finger protein 333 2 2
MIRT674817 FAM229B family with sequence similarity 229 member B 2 2
MIRT675304 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675404 SVOP SV2 related protein 2 2
MIRT676163 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676320 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT676347 PCCB propionyl-CoA carboxylase beta subunit 2 2
MIRT676526 RNF216 ring finger protein 216 2 2
MIRT676571 VSIG1 V-set and immunoglobulin domain containing 1 2 2
MIRT676588 RDH13 retinol dehydrogenase 13 2 2
MIRT676648 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676723 METTL14 methyltransferase like 14 2 2
MIRT676805 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT676813 SHROOM4 shroom family member 4 2 2
MIRT677204 MURC caveolae associated protein 4 2 2
MIRT677284 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677359 POC1A POC1 centriolar protein A 2 2
MIRT677516 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677530 OCIAD2 OCIA domain containing 2 2 2
MIRT677627 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT677669 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT678056 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT678132 METTL21A methyltransferase like 21A 2 2
MIRT678154 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678463 GLYAT glycine-N-acyltransferase 2 2
MIRT678614 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT678716 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT679161 ZDHHC15 zinc finger DHHC-type containing 15 2 2
MIRT679307 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679430 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT679499 ZNF106 zinc finger protein 106 2 2
MIRT679963 VTA1 vesicle trafficking 1 2 2
MIRT679983 E2F2 E2F transcription factor 2 2 2
MIRT680153 TOP3A DNA topoisomerase III alpha 2 2
MIRT680304 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT680330 LRRC58 leucine rich repeat containing 58 2 2
MIRT680401 OXA1L OXA1L, mitochondrial inner membrane protein 2 2
MIRT683911 PSMB9 proteasome subunit beta 9 2 2
MIRT684183 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684238 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT684284 CDK9 cyclin dependent kinase 9 2 2
MIRT685411 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686260 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT688250 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688327 FAM151B family with sequence similarity 151 member B 2 2
MIRT688747 CNDP1 carnosine dipeptidase 1 2 2
MIRT689040 ANGPTL3 angiopoietin like 3 2 2
MIRT692525 PARD3 par-3 family cell polarity regulator 2 2
MIRT692984 LGSN lengsin, lens protein with glutamine synthetase domain 2 2
MIRT699866 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT699877 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT700840 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT701538 NCKAP1 NCK associated protein 1 2 2
MIRT703683 FAM189B family with sequence similarity 189 member B 2 2
MIRT708555 SPA17 sperm autoantigenic protein 17 2 2
MIRT708579 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT708721 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT708984 CABP4 calcium binding protein 4 2 2
MIRT709195 SAPCD2 suppressor APC domain containing 2 2 2
MIRT709679 PCDH17 protocadherin 17 2 2
MIRT709962 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT710173 MTRF1L mitochondrial translational release factor 1 like 2 2
MIRT710329 STK40 serine/threonine kinase 40 2 2
MIRT710532 TMEM201 transmembrane protein 201 2 2
MIRT710628 ASB7 ankyrin repeat and SOCS box containing 7 2 2
MIRT711037 RNF187 ring finger protein 187 2 2
MIRT711227 RETSAT retinol saturase 2 2
MIRT711418 RAB3C RAB3C, member RAS oncogene family 2 2
MIRT711469 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT711636 PEBP1 phosphatidylethanolamine binding protein 1 2 2
MIRT711658 RAB21 RAB21, member RAS oncogene family 2 2
MIRT711704 GMPR guanosine monophosphate reductase 2 2
MIRT711924 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT712061 ZBTB34 zinc finger and BTB domain containing 34 2 2
MIRT712094 TMEM218 transmembrane protein 218 2 2
MIRT712541 CYB561D1 cytochrome b561 family member D1 2 2
MIRT714480 TBL2 transducin beta like 2 2 2
MIRT716323 SIGLEC10 sialic acid binding Ig like lectin 10 2 2
MIRT716750 C19orf24 chromosome 19 open reading frame 24 2 2
MIRT717014 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT717162 SHB SH2 domain containing adaptor protein B 2 2
MIRT717369 EDN2 endothelin 2 2 2
MIRT717481 PDE4DIP phosphodiesterase 4D interacting protein 2 2
MIRT718080 CLIC5 chloride intracellular channel 5 2 2
MIRT718545 PIGQ phosphatidylinositol glycan anchor biosynthesis class Q 2 2
MIRT718835 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT718864 LRSAM1 leucine rich repeat and sterile alpha motif containing 1 2 2
MIRT719149 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT719687 ALDH1L2 aldehyde dehydrogenase 1 family member L2 2 2
MIRT719780 ZNF236 zinc finger protein 236 2 2
MIRT719859 KLF2 Kruppel like factor 2 2 2
MIRT720496 TMEM178B transmembrane protein 178B 2 2
MIRT720804 NUDT5 nudix hydrolase 5 2 2
MIRT720944 PPP1R3E protein phosphatase 1 regulatory subunit 3E 2 2
MIRT721344 LIF LIF, interleukin 6 family cytokine 2 2
MIRT721805 GRM1 glutamate metabotropic receptor 1 2 2
MIRT721924 LINGO2 leucine rich repeat and Ig domain containing 2 2 2
MIRT722429 HRNR hornerin 2 2
MIRT723971 GPR146 G protein-coupled receptor 146 2 2
MIRT724225 ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 2 2
MIRT724272 HMGCLL1 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 2 2
MIRT724659 PXDN peroxidasin 2 2
MIRT725282 OSTM1 osteopetrosis associated transmembrane protein 1 2 2
MIRT725434 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT725604 CAPN6 calpain 6 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-660 4-hydroxynonenal NULL 5283344 Microarray human leukemic HL-60 cell 19022373 2009 up-regulated
miR-660 Vorinostat (SAHA) approved 5311 Microarray A549 human non-small cell lung cancer cells 19513533 2009 up-regulated
miR-660 Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-660 Vitamin D3 approved 5280795 Quantitative real-time PCR Plasma 22594500 2012 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-660 Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-mir-660 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-660 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-660 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-mir-660 Cisplatin 5460033 NSC119875 approved resistant cell line (KYSE)
hsa-mir-660 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-mir-660 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-660 Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)
hsa-miR-660-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-660-3p Sorafenib 216239 NSC747971 approved sensitive Low Hepatocellular Carcinoma cell line (HepG2)
hsa-miR-660-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-660-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-660-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-660-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-660-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

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