miRTarBase - #MIRT732537


—
pre-miRNA Information
pre-miRNA mmu-mir-125a   
Genomic Coordinates chr17: 17830812 - 17830879
Description Mus musculus miR-125a stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies .
RNA Secondary Structure

Mature miRNA Information
Mature miRNA mmu-miR-125a-5p
Sequence 6| UCCCUGAGACCCUUUAACCUGUGA |29
Evidence Experimental
Experiments Cloned
Putative Targets

Gene Information
Gene Symbol Tnfrsf1b   
Synonyms CD120b, TNF-R-II, TNF-R2, TNF-R75, TNF-alphaR2, TNFBR, TNFR80, TNFRII, TNFalpha-R2, Tnfr-1, Tnfr2, p75
Description tumor necrosis factor receptor superfamily, member 1b
Transcript NM_011610   
Expression
Putative miRNA Targets on Tnfrsf1b
3'UTR of Tnfrsf1b
(miRNA target sites are highlighted)		 
>Tnfrsf1b|NM_011610|3'UTR
   1 CCCCTGACAGGGGTAACACCCTGCAAAGGGACCCCCGAGACCCTGAACCCATGGAACTTCATGACTTTTGCTGGATCCAT
  81 TTCCCTTAGTGGCTTCCAGAGCCCCAGTTGCAGGTCAAGTGAGGGCTGAGACAGCTAGAGTGGTCAAAAACTGCCATGGT
 161 GTTTTATGGGGGCAGTCCCAGGAAGTTGTTGCTCTTCCATGACCCCTCTGGATCTCCTGGGCTCTTGCCTGATTCTTGCT
 241 TCTGAGAGGCCCCAGTATTTTTTCCTTCTAAGGAGCTAACATCCTCTTCCATGAATAGCACAGCTCTTCAGCCTGAATGC
 321 TGACACTGCAGGGCGGTTCCAGCAAGTAGGAGCAAGTGGTGGCCTGGTAGGGCACAGAGGCCCTTCAGGTTAGTGCTAAA
 401 CTCTTAGGAAGTACCCTCTCCAAGCCCACCGAAATTCTTTTGATGCAAGAATCAGAGGCCCCATCAGGCAGAGTTGCTCT
 481 GTTATAGGATGGTAGGGCTGTAACTCAGTGGTCCAGTGTGCTTTTAGCATGCCCTGGGTTTGATCCTCAGCAACACATGC
 561 AAAACGTAAGTAGACAGCAGACAGCAGACAGCACAGCCAGCCCCCTGTGTGGTTTGCAGCCTCTGCCTTTGACTTTTACT
 641 CTGGTGGGCACACAGAGGGCTGGAGCTCCTCCTCCTGACCTTCTAATGAGCCCTTCCAAGGCCACGCCTTCCTTCAGGGA
 721 ATCTCAGGGACTGTAGAGTTCCCAGGCCCCTGCAGCCACCTGTCTCTTCCTACCTCAGCCTGGAGCACTCCCTCTAACTC
 801 CCCAACGGCTTGGTACTGTACTTGCTGTGACCCCAAGTGCATGTCCGGGTTAGGCACTGTGAGTTGGAACAGCTGATGAC
 881 ATCGGTTGAAAGGCCCACCCGGAAACAGCTGAAGCCAGCTCTTTTGCCAAAGGATTCATGCCGGTTTTCTAATCAACCTG
 961 CTCCCCTAGCATGCCTGGAAGGAAAGGGTTCAGGAGACTCCTCAAGAAGCAAGTTCAGTCTCAGGTGCTTGGATGCCATG
1041 CTCACCGATTCCACTGGATATGAACTTGGCAGAGGAGCCTAGTTGTTGCCATGGAGACTTAAAGAGCTCAGCACTCTGGA
1121 ATCAAGATACTGGACACTTGGGGCCGACTTGTTAAGGCTCTGCAGCATCAGACTGTAGAGGGGAAGGAACACGTCTGCCC
1201 CCTGGTGGCCCGTCCTGGGATGACCTCGGGCCTCCTAGGCAACAAAAGAATGAATTGGAAAGGACTGTTCCTGGGTGTGG
1281 CCTCAGCTCCTGTGCTTGTGTGGATCCCTAAAGGGTGTGCTAAGGAGCAATTGCACTGTGTGCTGGACAGAATTCCTGCT
1361 TATAAATGCTTTTTGTTGTTGTTTTGTACACTGAGCCCTGGCTGAGCCACCCCACCCCACCTCCCATCCCACCTTTACAG
1441 CCACTCTTGCAGAGAACCTGGCTGTCTCCCACTTGTAGCCTGTGGATGCTGAGGAAACACCCAGCCAAGTAGACTCCAGG
1521 CTTGCCCCTATCTCCTGCTCTGAGTCTGGCCTCCTCATTGTGTTGTGGGAAGGAGACGGGTTCTGTCATCTCGGAAGCCC
1601 ACACCGTGGATGTGAACAATGGCTGTACTAGCTTAGACCAGCTTAGGGCTCTGCAATCAGAGGAGGGGGAGCAGGGAACA
1681 ATTTGAGTGCTGACCTATAACACATTCCTAAAGGATGGGCAGTCCAGAATCTCCCTCCTTCAGTGTGTGTGTGTGTGTGT
1761 GTGTGTGTGTGTGTGTGTGTGTGTCCATGTTTGCATGTATGTGTGTGCCAGTGTGTGGAGGCCAGAGGTTGGCTTTGGGT
1841 GTGTTTGATCACTCTCAGTTACTGAGGCAGGGCTCTCATCTGTACCCAGAGCTTGCACATTTTCTAGTCTAACTTGCTTC
1921 AGGGATCTCTGTCTGCCTATGGAGTGCTCAGGTTACAGGCAGGCTGCCATACCTGCCCGACATTTACATGAATACTAGAG
2001 ATCTGAATTCTGGTCCTCACACTTGTATACCTGCATTTTATCCACTAAGACATCTCTCCAAGGGCTCCCCCTTCCTATTT
2081 AATAAGTTAGTTTTGAACTGGCAAGATGGCTCAGTGGGTAAGGCAGTTTGCGGACAAACCTGATGACCTGAGTTGGATCC
2161 CTGACCATAAGGTAGAAGAGACCTGATTCCTGCAAGTTGTCCTCTGACCACCACCCCATACATGCTTCTGCATATGTGCA
2241 CACATCACATTCTTGCACACACACTCACATACCATAAATGTAATAAATTTTTTTAAATAAATTGATTTTATCTTTTAATC
2321 ATTATTTTTGCTTATCTGTTTGTTCATACATGGAGTTTTGCTGTATACCCAGTCTGGCTGCATCCTCCAGGCACCTTGAA
2401 CTTGGATATTCTCCTGCCTCAGTTTCGAGAGTGCTGAGTTATAGGCATGTGCAACCGTGTCAGGACCCTTGGCGTTACAT
2481 TATGTTTTCGAATCTTATTTTTCCATCTAAGACTGACAACCACCTTGCCAAAGGATGACCTTGACTTTTGTATCCTCTTG
2561 CCTCTACTTCCCAAGTATTGGGATGACAAGTCTGTCCATCCTATGATTTGTGTGGTGCTGGGGCTTGAACCCAGGGGCCT
2641 CGTGAATGCTAGGCAAACGCAATCAGCTGCCCAACCCCGAACTTCACTTTTCACCTGTGATTTCTTAACATGGTTCCTGA
2721 GCAGACAGCATGATCCTGTTGCCTTGAGGAGCTCTGCTCGTTGCTTTGACAATGCTCTATTTACTAAAGAATACTTATAG
2801 AGTTCAAGACTCCAAAGCAGCAGTTCCCAACCTGTGGGTATGACCTCTTGGGTATCCCATATCAGATATTTACATTAAAC
2881 TTATAACAGAAGCAAAATTACAGTTATGGGGTAGCAACAAAATAATTTTTTTTTGAGGCAGGGTTTATCTGTGTAGCTCA
2961 CTTTGTACAGACTAGGCTGGCCTTGAACTTAAAGATCTGCCTGCCTCTGCCTTCTGAATGCTGGGATTAAATGTGTGTGC
3041 CAACATGCCCAGTGCAGTGAAATAATTTTATTGTTGGGTCACCAAAACATGAGAAAGAGTATTAAAAGGTCATAGCGTTA
3121 GGAAGGTTGAGAACCACTGCCCCAAAAGATAGTAGAAATAGGTAATAGCATTTTAAAAAAAGATTAATTTCTTTTTCCGT
3201 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGGGTGCTGAATTCCCTAAATCTGGG
3281 ATTACAGACAATTGTGCCAAATGGGTATTGGGAACCAAAGTTGGGTTTTCTGAAAGAGCAGCAAGTGCCCTTAACTGCTG
3361 AGCCCTCTCTCTAGCTATAATAAACTTTTTTTTAAAAAAATTAAAAAAATTTAGCACTC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' aguguccAAUUUCC-CAGAGUCCCu 5'
                 || |:||  |||||||| 
Target 5' gccttccTTCAGGGAATCTCAGGGa 3'
 706 - 730 157.00 -20.60
2 
miRNA  3' agUGUCCAAUUUCCCAGAGUCCcu 5'
            :|| ||| |   ||||||||  
Target 5' aaGCAAGTTCA---GTCTCAGGtg 3'
 1007 - 1027 143.00 -13.90
3 
miRNA  3' agUG-UCCAAUUUCCCAGAGUCCCu 5'
            || || |||:|    ||:|||| 
Target 5' gtACTAGCTTAGACCAGCTTAGGGc 3'
 1625 - 1649 142.00 -14.10
CLIP-seq Support 1 for dataset GSM4656408
Method / RBP HITS-CLIP / AGO
Cell line / Condition mouse liver / P7
Location of target site NM_011610 | 3UTR | AGGGAAUCUCAGGGACUGUAGAGUUCCCAGGCCCCUGCAGCCACCUGUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE153876
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4656408
Method / RBP HITS-CLIP / AGO
Cell line / Condition mouse liver / P7
Location of target site NM_011610 | 3UTR | AGGGAAUCUCAGGGACUGUAGAGUUCCCAGGCCCCUGCAGCCACCUGUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE153876
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4656409
Method / RBP HITS-CLIP / AGO
Cell line / Condition mouse liver / Adult
Location of target site NM_011610 | 3UTR | AGGGAAUCUCAGGGACUGUAGAGUUCCCAGGCCCCUGCAGCCACCUGUCUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE153876
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4656409
Method / RBP HITS-CLIP / AGO
Cell line / Condition mouse liver / Adult
Location of target site NM_011610 | 3UTR | GCUUCAGGGAUCUCUGUCUGCCUAUGGAGUGCUCAGGUUACAGGCAGGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE153876
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4656410
Method / RBP HITS-CLIP / AGO
Cell line / Condition mouse liver / e185 rep2
Location of target site NM_011610 | 3UTR | AGGGAAUCUCAGGGACUGUAGAGUUCCCAGGCCCCUGCAGCCACCUGUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE153876
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4656410
Method / RBP HITS-CLIP / AGO
Cell line / Condition mouse liver / e185 rep2
Location of target site NM_011610 | 3UTR | AGGGAUCUCUGUCUGCCUAUGGAGUGCUCAGGUUACAGGCAGGCUGCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE153876
CLIP-seq Viewer Link
28 mmu-miR-125a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT001716 Lin28a lin-28 homolog A (C. elegans) 1 1
MIRT005597 Trim71 tripartite motif-containing 71 4 3
MIRT006310 Cbx7 chromobox 7 2 1
MIRT006967 4632428N05Rik V-set immunoregulatory receptor 2 1
MIRT054177 Ptpn18 protein tyrosine phosphatase, non-receptor type 18 2 1
MIRT054178 Ptpn7 protein tyrosine phosphatase, non-receptor type 7 2 1
MIRT054179 Ppp1ca protein phosphatase 1, catalytic subunit, alpha isoform 2 1
MIRT054180 Ppp2ca protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform 2 1
MIRT054570 Traf6 TNF receptor-associated factor 6 3 1
MIRT580227 Tspan12 tetraspanin 12 2 2
MIRT582368 Mtf1 metal response element binding transcription factor 1 2 2
MIRT582450 Mgat4a mannoside acetylglucosaminyltransferase 4, isoenzyme A 2 2
MIRT584884 Antxr2 anthrax toxin receptor 2 2 2
MIRT587193 Foxk1 forkhead box K1 2 2
MIRT588848 Snrnp40 small nuclear ribonucleoprotein 40 (U5) 2 2
MIRT591275 Lars2 leucyl-tRNA synthetase, mitochondrial 2 4
MIRT592914 Madd MAP-kinase activating death domain 2 2
MIRT594893 Il1rn interleukin 1 receptor antagonist 2 4
MIRT596427 Hif1an hypoxia-inducible factor 1, alpha subunit inhibitor 3 3
MIRT599142 Dqx1 DEAQ RNA-dependent ATPase 2 2
MIRT599717 Aph1c aph1 homolog C, gamma secretase subunit 2 2
MIRT600832 Gm14137 predicted gene 14137 2 2
MIRT604902 Jmy junction-mediating and regulatory protein 2 2
MIRT605441 Stat1 signal transducer and activator of transcription 1 2 2
MIRT606092 Wdr25 WD repeat domain 25 2 2
MIRT732537 Tnfrsf1b tumor necrosis factor receptor superfamily, member 1b 4 0
MIRT734700 VDR vitamin D receptor 2 0
MIRT734824 Sox11 SRY (sex determining region Y)-box 11 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-125a Budesonide approved 5281004 Microarray neonatal mice liver 20145010 2010 down-regulated
miR-125a Phenethyl isothiocyanate(PEITC) NULL 16741 Microarray neonatal mice lung 20145010 2010 down-regulated
miR-125a Chaihu Shugan San NULL NULL Microarray hippocampus 23947143 2013 down-regualted
miR-125a Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 down-regulated
miR-125a Hydroxamic acid HDACi LAQ824 NULL NULL Microarray breast cancer cell line SKBr3 16452179 2006 up-regulated
miR-125a Enoxacin approved 3229 Quantitative real-time PCR HEK293 cells 18641635 2008 up-regulated
miR-125a 4-hydroxynonenal NULL 5283344 Microarray human leukemic HL-60 cell 19022373 2009 up-regulated
miR-125a Valproate approved 3121 Quantitative real-time PCR CD4+, CD25- T cells 20427269 2010 down-regulated
miR-125a Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-125a Enoxacin approved 3229 Northern blot HCT-116 and RKO colon cancer cell lines 21368194 2011 up-regulated
miR-125a Enoxacin approved 3229 Quantitative real-time PCR HCT-116 and RKO colon cancer cell lines 21368194 2011 up-regulated
miR-125a 5-aza-2'-deoxycytidine (5-Aza-CdR) approved 451668 Microarray breast cancer MDA-MB231 22076154 2011 down-regulated
miR-125a-5p Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 up-regulated
miR-125a-5p Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse liver 19270793 2009 down-regulated
miR-125a-5p Curcumin NULL 969516 Microarray HONE1 cells 24896104 2014 down-regulated
miR-125a-5p 5-Fluorouracil approved 3385 Microarray MCF-7 breast cancer cells 21506117 2011 down-regulated
miR-125a-5p Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-125a-5p Trastuzumab approved NULL Microarray SKBR3 cells. 22384020 2012 up-regulated
miR-125a-5p Glucocorticoid NULL NULL TaqMan low-density array Eosinophilic esophagitis 22815788 2012 up-regulated
miR-125a-5p Marine fungal metabolite 1386A NULL NULL Microarray MCF-7 breast cancer cells. 22159329 2012 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
mmu-miR-125a-5p Paclitaxel 36314 NSC125973 approved sensitive Low Colon Cancer tissue and cell line (HT-29)

Error report submission